Multiple sequence alignment - TraesCS3D01G036200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G036200 chr3D 100.000 3125 0 0 1 3125 13169833 13166709 0.000000e+00 5771
1 TraesCS3D01G036200 chr3D 78.221 326 62 8 1283 1605 525917673 525917354 1.900000e-47 200
2 TraesCS3D01G036200 chr3B 92.757 3203 105 53 1 3125 18848810 18845657 0.000000e+00 4512
3 TraesCS3D01G036200 chr3B 90.681 279 20 6 2849 3125 18845000 18844726 1.770000e-97 366
4 TraesCS3D01G036200 chr3A 91.998 2437 90 35 523 2923 24036833 24039200 0.000000e+00 3323
5 TraesCS3D01G036200 chr3A 94.831 561 9 7 1 553 24036283 24036831 0.000000e+00 857
6 TraesCS3D01G036200 chr1A 82.042 284 45 6 1283 1563 58946932 58947212 1.450000e-58 237
7 TraesCS3D01G036200 chr1D 80.986 284 48 6 1283 1563 60317518 60317798 1.460000e-53 220
8 TraesCS3D01G036200 chr1B 80.783 281 48 6 1286 1563 96488989 96488712 6.790000e-52 215
9 TraesCS3D01G036200 chr2D 85.096 208 29 2 1271 1477 48133243 48133449 8.780000e-51 211
10 TraesCS3D01G036200 chr2B 85.096 208 29 2 1271 1477 75847560 75847766 8.780000e-51 211
11 TraesCS3D01G036200 chr2A 84.615 208 30 2 1271 1477 51008495 51008289 4.090000e-49 206
12 TraesCS3D01G036200 chr4D 79.054 296 55 7 1272 1563 315597323 315597615 2.460000e-46 196
13 TraesCS3D01G036200 chr4B 78.716 296 56 7 1272 1563 393406270 393406562 1.140000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G036200 chr3D 13166709 13169833 3124 True 5771 5771 100.0000 1 3125 1 chr3D.!!$R1 3124
1 TraesCS3D01G036200 chr3B 18844726 18848810 4084 True 2439 4512 91.7190 1 3125 2 chr3B.!!$R1 3124
2 TraesCS3D01G036200 chr3A 24036283 24039200 2917 False 2090 3323 93.4145 1 2923 2 chr3A.!!$F1 2922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 888 0.321671 TCCCACTTCTCCTTGCTTCG 59.678 55.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2512 2643 0.248012 AACGACCACTCACACACACA 59.752 50.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.453928 GCCACATAACTCCAGCCCC 60.454 63.158 0.00 0.00 0.00 5.80
94 95 3.059935 CGGCACAAAAGGCAACAAAATAC 60.060 43.478 0.00 0.00 41.41 1.89
239 246 6.928202 TCTATCAGGAGAAGGATAAAGAGGT 58.072 40.000 0.00 0.00 0.00 3.85
517 530 1.992557 AGGCCACTATTTCTTCCCACA 59.007 47.619 5.01 0.00 0.00 4.17
610 655 3.703556 TCACCAGCTTTTGATTTCCAACA 59.296 39.130 0.00 0.00 33.85 3.33
650 698 1.352083 TCCTCCCAAGAACCAGACTG 58.648 55.000 0.00 0.00 0.00 3.51
651 699 0.322008 CCTCCCAAGAACCAGACTGC 60.322 60.000 0.00 0.00 0.00 4.40
652 700 0.397941 CTCCCAAGAACCAGACTGCA 59.602 55.000 0.00 0.00 0.00 4.41
653 701 0.397941 TCCCAAGAACCAGACTGCAG 59.602 55.000 13.48 13.48 0.00 4.41
682 730 1.003355 TTGAGCCTTTGGAGGAGCG 60.003 57.895 0.00 0.00 46.74 5.03
685 733 2.747855 GCCTTTGGAGGAGCGTGG 60.748 66.667 0.00 0.00 46.74 4.94
803 864 2.964464 GCCCTCTTCTCATCTCATCTCA 59.036 50.000 0.00 0.00 0.00 3.27
805 866 4.322198 GCCCTCTTCTCATCTCATCTCATC 60.322 50.000 0.00 0.00 0.00 2.92
806 867 5.081728 CCCTCTTCTCATCTCATCTCATCT 58.918 45.833 0.00 0.00 0.00 2.90
811 872 4.665451 TCTCATCTCATCTCATCTCTCCC 58.335 47.826 0.00 0.00 0.00 4.30
812 873 4.106019 TCTCATCTCATCTCATCTCTCCCA 59.894 45.833 0.00 0.00 0.00 4.37
813 874 4.151121 TCATCTCATCTCATCTCTCCCAC 58.849 47.826 0.00 0.00 0.00 4.61
814 875 3.969466 TCTCATCTCATCTCTCCCACT 57.031 47.619 0.00 0.00 0.00 4.00
815 876 4.262891 TCTCATCTCATCTCTCCCACTT 57.737 45.455 0.00 0.00 0.00 3.16
816 877 4.214310 TCTCATCTCATCTCTCCCACTTC 58.786 47.826 0.00 0.00 0.00 3.01
817 878 4.079269 TCTCATCTCATCTCTCCCACTTCT 60.079 45.833 0.00 0.00 0.00 2.85
818 879 4.214310 TCATCTCATCTCTCCCACTTCTC 58.786 47.826 0.00 0.00 0.00 2.87
819 880 3.025322 TCTCATCTCTCCCACTTCTCC 57.975 52.381 0.00 0.00 0.00 3.71
820 881 2.584965 TCTCATCTCTCCCACTTCTCCT 59.415 50.000 0.00 0.00 0.00 3.69
821 882 3.012274 TCTCATCTCTCCCACTTCTCCTT 59.988 47.826 0.00 0.00 0.00 3.36
822 883 3.102972 TCATCTCTCCCACTTCTCCTTG 58.897 50.000 0.00 0.00 0.00 3.61
823 884 1.270907 TCTCTCCCACTTCTCCTTGC 58.729 55.000 0.00 0.00 0.00 4.01
824 885 1.203237 TCTCTCCCACTTCTCCTTGCT 60.203 52.381 0.00 0.00 0.00 3.91
825 886 1.627834 CTCTCCCACTTCTCCTTGCTT 59.372 52.381 0.00 0.00 0.00 3.91
826 887 1.625818 TCTCCCACTTCTCCTTGCTTC 59.374 52.381 0.00 0.00 0.00 3.86
827 888 0.321671 TCCCACTTCTCCTTGCTTCG 59.678 55.000 0.00 0.00 0.00 3.79
861 922 2.891580 CCTACACACACAGTACACTCCT 59.108 50.000 0.00 0.00 0.00 3.69
947 1011 3.309582 GCTACCTAGCTGTGCCCA 58.690 61.111 0.00 0.00 45.62 5.36
969 1033 3.576118 ACAGAGGGGTTCATCGATCATAG 59.424 47.826 0.00 0.00 0.00 2.23
1074 1144 3.883549 GCCATGGAGGAGGAGGCC 61.884 72.222 18.40 0.00 41.22 5.19
1201 1271 0.178767 TGAGTTGATCTCCCGCCATG 59.821 55.000 0.00 0.00 42.12 3.66
1202 1272 1.153086 AGTTGATCTCCCGCCATGC 60.153 57.895 0.00 0.00 0.00 4.06
1203 1273 1.451927 GTTGATCTCCCGCCATGCA 60.452 57.895 0.00 0.00 0.00 3.96
1207 1277 0.954449 GATCTCCCGCCATGCATCTG 60.954 60.000 0.00 0.00 0.00 2.90
1208 1278 2.407440 ATCTCCCGCCATGCATCTGG 62.407 60.000 0.00 0.00 39.45 3.86
1250 1333 8.571336 GCCATGAATATTTTCTTACTGCTGTAT 58.429 33.333 4.12 0.00 32.78 2.29
1626 1709 4.349503 ATGGAGCAGCACGGCCAA 62.350 61.111 2.24 0.00 33.51 4.52
1959 2048 3.056250 TCGACTACCTCAACTACTCGAGT 60.056 47.826 23.66 23.66 41.56 4.18
1987 2079 1.744522 CCAACGCCATGAACATGATGA 59.255 47.619 15.21 0.00 41.20 2.92
1990 2082 1.951602 ACGCCATGAACATGATGATGG 59.048 47.619 15.70 15.70 41.20 3.51
2291 2404 4.910458 ATGGAGCTCATCATCATCATCA 57.090 40.909 17.19 0.00 0.00 3.07
2384 2501 0.966179 AGTGTAGTCGATGTGGTGCA 59.034 50.000 0.00 0.00 0.00 4.57
2385 2502 1.550524 AGTGTAGTCGATGTGGTGCAT 59.449 47.619 0.00 0.00 41.24 3.96
2425 2542 6.817765 GTGTAACCTTTTGGATCTGATCAA 57.182 37.500 18.64 5.24 44.07 2.57
2426 2543 7.396540 GTGTAACCTTTTGGATCTGATCAAT 57.603 36.000 18.64 0.00 44.07 2.57
2427 2544 7.253422 GTGTAACCTTTTGGATCTGATCAATG 58.747 38.462 18.64 7.94 44.07 2.82
2428 2545 7.121168 GTGTAACCTTTTGGATCTGATCAATGA 59.879 37.037 18.64 0.00 44.07 2.57
2429 2546 6.770746 AACCTTTTGGATCTGATCAATGAG 57.229 37.500 18.64 10.53 44.07 2.90
2430 2547 5.198965 ACCTTTTGGATCTGATCAATGAGG 58.801 41.667 18.64 18.98 44.07 3.86
2431 2548 5.198965 CCTTTTGGATCTGATCAATGAGGT 58.801 41.667 18.64 0.00 44.07 3.85
2432 2549 5.067413 CCTTTTGGATCTGATCAATGAGGTG 59.933 44.000 18.64 2.16 44.07 4.00
2433 2550 4.849813 TTGGATCTGATCAATGAGGTGT 57.150 40.909 18.64 0.00 0.00 4.16
2434 2551 5.955961 TTGGATCTGATCAATGAGGTGTA 57.044 39.130 18.64 0.00 0.00 2.90
2435 2552 5.955961 TGGATCTGATCAATGAGGTGTAA 57.044 39.130 18.64 0.00 0.00 2.41
2436 2553 5.674525 TGGATCTGATCAATGAGGTGTAAC 58.325 41.667 18.64 0.00 0.00 2.50
2509 2640 5.437289 TTCTCATGCTACTTGTTTGTTGG 57.563 39.130 0.00 0.00 0.00 3.77
2510 2641 4.460263 TCTCATGCTACTTGTTTGTTGGT 58.540 39.130 0.00 0.00 0.00 3.67
2511 2642 4.275689 TCTCATGCTACTTGTTTGTTGGTG 59.724 41.667 0.00 0.00 0.00 4.17
2512 2643 3.951037 TCATGCTACTTGTTTGTTGGTGT 59.049 39.130 0.00 0.00 0.00 4.16
2564 2695 1.604604 ATCGTTTGTGTTGGTGAGGG 58.395 50.000 0.00 0.00 0.00 4.30
2584 2715 1.003118 GGGTGGTGCACTTACATCTGA 59.997 52.381 17.98 0.00 34.40 3.27
2675 2806 6.151144 GCTTCTCAGGGCTTTTGAAACTATTA 59.849 38.462 0.00 0.00 0.00 0.98
2676 2807 7.309194 GCTTCTCAGGGCTTTTGAAACTATTAA 60.309 37.037 0.00 0.00 0.00 1.40
2677 2808 8.472007 TTCTCAGGGCTTTTGAAACTATTAAA 57.528 30.769 0.00 0.00 0.00 1.52
2715 2846 0.597637 ATGATCGATTGTCGTCGGGC 60.598 55.000 0.00 0.00 41.35 6.13
2855 2991 0.678366 TCACTCTCTCTCGAGGGCAC 60.678 60.000 13.56 0.00 41.71 5.01
2876 3012 2.228480 GGAACCCTAGCCACCCACA 61.228 63.158 0.00 0.00 0.00 4.17
2877 3013 1.002502 GAACCCTAGCCACCCACAC 60.003 63.158 0.00 0.00 0.00 3.82
2900 3036 2.026822 CCTATCATCCTATTGCCGCCTT 60.027 50.000 0.00 0.00 0.00 4.35
2903 3039 0.109342 CATCCTATTGCCGCCTTCCT 59.891 55.000 0.00 0.00 0.00 3.36
2971 4036 2.519013 GTTGAAGGAAGCAAGGTGGAT 58.481 47.619 0.00 0.00 0.00 3.41
2973 4038 0.813821 GAAGGAAGCAAGGTGGATGC 59.186 55.000 0.00 0.00 44.15 3.91
3053 4119 1.069765 GTCGGCGATGTCCATGGAT 59.930 57.895 19.62 1.68 0.00 3.41
3060 4126 2.141517 CGATGTCCATGGATGCTCTTC 58.858 52.381 19.62 11.24 0.00 2.87
3061 4127 2.484241 CGATGTCCATGGATGCTCTTCA 60.484 50.000 19.62 9.66 0.00 3.02
3088 4154 4.104086 AGACATCTTCACCCAAGTGGATA 58.896 43.478 0.00 0.00 44.64 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.076178 GTCTACTTGAAGCAAAGAATAAGCAAA 58.924 33.333 0.00 0.00 0.00 3.68
67 68 1.526464 GTTGCCTTTTGTGCCGATTTG 59.474 47.619 0.00 0.00 0.00 2.32
118 119 4.311816 TGCTTGCAGAAAAGAAAGGAAG 57.688 40.909 0.00 0.00 33.31 3.46
517 530 3.525199 AGAGAGAGAGAGAGAGAGGCTTT 59.475 47.826 0.00 0.00 0.00 3.51
610 655 4.327680 GAAGATAGAAGGGCAAGTGTGTT 58.672 43.478 0.00 0.00 0.00 3.32
650 698 1.871126 GCTCAAGGACTTTGGCCTGC 61.871 60.000 3.32 0.00 37.39 4.85
651 699 1.246737 GGCTCAAGGACTTTGGCCTG 61.247 60.000 17.11 0.00 43.78 4.85
652 700 1.075659 GGCTCAAGGACTTTGGCCT 59.924 57.895 17.11 0.00 43.78 5.19
653 701 0.540597 AAGGCTCAAGGACTTTGGCC 60.541 55.000 16.83 16.83 41.18 5.36
712 762 1.596603 TGTGGCAATCATATGGAGCG 58.403 50.000 2.13 0.00 0.00 5.03
803 864 1.836802 GCAAGGAGAAGTGGGAGAGAT 59.163 52.381 0.00 0.00 0.00 2.75
805 866 1.274712 AGCAAGGAGAAGTGGGAGAG 58.725 55.000 0.00 0.00 0.00 3.20
806 867 1.625818 GAAGCAAGGAGAAGTGGGAGA 59.374 52.381 0.00 0.00 0.00 3.71
811 872 3.126000 GGATTTCGAAGCAAGGAGAAGTG 59.874 47.826 0.00 0.00 0.00 3.16
812 873 3.008485 AGGATTTCGAAGCAAGGAGAAGT 59.992 43.478 0.00 0.00 0.00 3.01
813 874 3.604582 AGGATTTCGAAGCAAGGAGAAG 58.395 45.455 0.00 0.00 0.00 2.85
814 875 3.703001 AGGATTTCGAAGCAAGGAGAA 57.297 42.857 0.00 0.00 0.00 2.87
815 876 4.504858 GTTAGGATTTCGAAGCAAGGAGA 58.495 43.478 0.00 0.00 0.00 3.71
816 877 3.623510 GGTTAGGATTTCGAAGCAAGGAG 59.376 47.826 0.00 0.00 0.00 3.69
817 878 3.606687 GGTTAGGATTTCGAAGCAAGGA 58.393 45.455 0.00 0.00 0.00 3.36
818 879 2.683362 GGGTTAGGATTTCGAAGCAAGG 59.317 50.000 0.00 0.00 31.53 3.61
819 880 2.683362 GGGGTTAGGATTTCGAAGCAAG 59.317 50.000 0.00 0.00 31.53 4.01
820 881 2.619590 GGGGGTTAGGATTTCGAAGCAA 60.620 50.000 0.00 0.00 31.53 3.91
821 882 1.064979 GGGGGTTAGGATTTCGAAGCA 60.065 52.381 0.00 0.00 31.53 3.91
822 883 1.212195 AGGGGGTTAGGATTTCGAAGC 59.788 52.381 0.00 0.00 0.00 3.86
823 884 3.453353 TGTAGGGGGTTAGGATTTCGAAG 59.547 47.826 0.00 0.00 0.00 3.79
824 885 3.198417 GTGTAGGGGGTTAGGATTTCGAA 59.802 47.826 0.00 0.00 0.00 3.71
825 886 2.767960 GTGTAGGGGGTTAGGATTTCGA 59.232 50.000 0.00 0.00 0.00 3.71
826 887 2.502538 TGTGTAGGGGGTTAGGATTTCG 59.497 50.000 0.00 0.00 0.00 3.46
827 888 3.264964 TGTGTGTAGGGGGTTAGGATTTC 59.735 47.826 0.00 0.00 0.00 2.17
861 922 4.134379 ACTACTACTACTAGCGAGTGCA 57.866 45.455 10.02 0.00 46.23 4.57
947 1011 1.866015 TGATCGATGAACCCCTCTGT 58.134 50.000 0.54 0.00 0.00 3.41
969 1033 7.011295 GGTCACCTCGTAGCTACTATATATGAC 59.989 44.444 21.20 21.67 0.00 3.06
1074 1144 3.898509 CCTCTCCTCAGCTCGGCG 61.899 72.222 0.00 0.00 0.00 6.46
1202 1272 0.816421 TCGACATGCATGGCCAGATG 60.816 55.000 29.41 15.48 29.87 2.90
1203 1273 0.109913 ATCGACATGCATGGCCAGAT 59.890 50.000 29.41 21.78 29.87 2.90
1207 1277 2.941333 CGATCGACATGCATGGCC 59.059 61.111 29.41 19.13 29.87 5.36
1208 1278 2.250485 GCGATCGACATGCATGGC 59.750 61.111 29.41 26.62 0.00 4.40
1250 1333 7.950124 TCAACCCTGACATGACAGAGATATATA 59.050 37.037 24.01 2.08 39.94 0.86
1251 1334 6.784473 TCAACCCTGACATGACAGAGATATAT 59.216 38.462 24.01 3.09 39.94 0.86
1299 1382 1.448013 GTAGTTCAGCCACCGGAGC 60.448 63.158 9.46 11.37 0.00 4.70
1605 1688 2.513204 CCGTGCTGCTCCATCAGG 60.513 66.667 0.00 0.00 34.74 3.86
1626 1709 2.363147 GAGGAGGACAGGACGCCT 60.363 66.667 0.00 0.00 37.18 5.52
1762 1851 1.302511 GTTCGGAGAAGCAGGGCAA 60.303 57.895 0.00 0.00 45.90 4.52
1987 2079 2.457743 TAGTTGCCGCCGTTCACCAT 62.458 55.000 0.00 0.00 0.00 3.55
1990 2082 1.500512 TTGTAGTTGCCGCCGTTCAC 61.501 55.000 0.00 0.00 0.00 3.18
2291 2404 7.822822 GGTAACTTTGATCACTACTACATGGTT 59.177 37.037 0.00 0.00 0.00 3.67
2384 2501 6.432162 GGTTACACCTCATTGATCATGCATAT 59.568 38.462 0.00 0.00 34.73 1.78
2385 2502 5.764686 GGTTACACCTCATTGATCATGCATA 59.235 40.000 0.00 0.00 34.73 3.14
2414 2531 5.059833 GGTTACACCTCATTGATCAGATCC 58.940 45.833 8.00 0.00 34.73 3.36
2429 2546 7.392418 AGTTACTAGATCCAAAAGGTTACACC 58.608 38.462 0.00 0.00 38.99 4.16
2430 2547 9.363763 GTAGTTACTAGATCCAAAAGGTTACAC 57.636 37.037 0.00 0.00 0.00 2.90
2431 2548 8.246180 CGTAGTTACTAGATCCAAAAGGTTACA 58.754 37.037 0.00 0.00 0.00 2.41
2432 2549 8.246871 ACGTAGTTACTAGATCCAAAAGGTTAC 58.753 37.037 0.00 0.00 37.78 2.50
2433 2550 8.353423 ACGTAGTTACTAGATCCAAAAGGTTA 57.647 34.615 0.00 0.00 37.78 2.85
2434 2551 7.237209 ACGTAGTTACTAGATCCAAAAGGTT 57.763 36.000 0.00 0.00 37.78 3.50
2435 2552 6.847421 ACGTAGTTACTAGATCCAAAAGGT 57.153 37.500 0.00 0.00 37.78 3.50
2436 2553 6.909357 CGTACGTAGTTACTAGATCCAAAAGG 59.091 42.308 7.22 0.00 37.78 3.11
2437 2554 7.427606 CACGTACGTAGTTACTAGATCCAAAAG 59.572 40.741 22.34 0.00 37.78 2.27
2509 2640 1.006832 GACCACTCACACACACACAC 58.993 55.000 0.00 0.00 0.00 3.82
2510 2641 0.459411 CGACCACTCACACACACACA 60.459 55.000 0.00 0.00 0.00 3.72
2511 2642 0.459585 ACGACCACTCACACACACAC 60.460 55.000 0.00 0.00 0.00 3.82
2512 2643 0.248012 AACGACCACTCACACACACA 59.752 50.000 0.00 0.00 0.00 3.72
2564 2695 1.003118 TCAGATGTAAGTGCACCACCC 59.997 52.381 14.63 6.87 34.49 4.61
2675 2806 8.693120 ATCATCTCTTGTTATGATCATGCTTT 57.307 30.769 18.72 0.00 38.19 3.51
2855 2991 2.680370 GGGTGGCTAGGGTTCCAGG 61.680 68.421 0.00 0.00 32.15 4.45
2876 3012 1.909302 CGGCAATAGGATGATAGGGGT 59.091 52.381 0.00 0.00 0.00 4.95
2877 3013 1.407437 GCGGCAATAGGATGATAGGGG 60.407 57.143 0.00 0.00 0.00 4.79
2900 3036 0.532573 GCTCGACAACCATCTCAGGA 59.467 55.000 0.00 0.00 0.00 3.86
2903 3039 1.941209 GCTTGCTCGACAACCATCTCA 60.941 52.381 0.00 0.00 33.68 3.27
2973 4038 0.744414 ATTTGGCGATGACTGGACCG 60.744 55.000 0.00 0.00 0.00 4.79
2976 4041 0.617935 TGGATTTGGCGATGACTGGA 59.382 50.000 0.00 0.00 0.00 3.86
2982 4047 3.678289 TCCATATCTGGATTTGGCGATG 58.322 45.455 12.94 0.32 46.95 3.84
3035 4101 1.069765 ATCCATGGACATCGCCGAC 59.930 57.895 18.99 0.00 0.00 4.79
3045 4111 4.019051 TCTTTTCTGAAGAGCATCCATGGA 60.019 41.667 18.88 18.88 33.66 3.41
3053 4119 5.468072 GTGAAGATGTCTTTTCTGAAGAGCA 59.532 40.000 3.21 5.56 36.11 4.26
3060 4126 4.823989 ACTTGGGTGAAGATGTCTTTTCTG 59.176 41.667 0.00 0.00 36.11 3.02
3061 4127 4.823989 CACTTGGGTGAAGATGTCTTTTCT 59.176 41.667 0.00 0.00 45.61 2.52
3088 4154 3.769739 TCACTTGCTACACACAGGAAT 57.230 42.857 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.