Multiple sequence alignment - TraesCS3D01G036000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G036000 chr3D 100.000 4451 0 0 1 4451 13102440 13106890 0.000000e+00 8220.0
1 TraesCS3D01G036000 chr3B 89.596 3066 181 64 550 3543 18773032 18776031 0.000000e+00 3768.0
2 TraesCS3D01G036000 chr3B 78.372 823 101 43 3548 4335 18776260 18777040 3.140000e-126 462.0
3 TraesCS3D01G036000 chr3B 93.007 143 7 1 1112 1251 743801613 743801755 5.840000e-49 206.0
4 TraesCS3D01G036000 chr3B 81.250 256 39 8 133 385 513534897 513535146 9.770000e-47 198.0
5 TraesCS3D01G036000 chr3B 91.892 74 5 1 4378 4451 18777443 18777515 7.880000e-18 102.0
6 TraesCS3D01G036000 chr3A 85.742 1571 133 55 488 2001 24209440 24207904 0.000000e+00 1576.0
7 TraesCS3D01G036000 chr3A 90.846 721 53 5 2307 3023 24207499 24206788 0.000000e+00 953.0
8 TraesCS3D01G036000 chr3A 94.990 519 23 3 3030 3546 24206752 24206235 0.000000e+00 811.0
9 TraesCS3D01G036000 chr3A 80.969 289 43 6 99 380 436270190 436269907 7.500000e-53 219.0
10 TraesCS3D01G036000 chr3A 77.600 250 42 10 825 1071 24211170 24210932 6.000000e-29 139.0
11 TraesCS3D01G036000 chr1D 87.712 236 22 5 156 384 375980681 375980916 7.340000e-68 268.0
12 TraesCS3D01G036000 chr1D 90.566 53 5 0 2574 2626 192570729 192570781 2.220000e-08 71.3
13 TraesCS3D01G036000 chr6A 87.931 232 21 2 156 380 103306163 103305932 2.640000e-67 267.0
14 TraesCS3D01G036000 chr7A 86.695 233 24 5 156 381 502237900 502238132 7.390000e-63 252.0
15 TraesCS3D01G036000 chr7A 94.406 143 5 2 1112 1251 19709139 19708997 2.700000e-52 217.0
16 TraesCS3D01G036000 chr7A 94.406 143 5 2 1112 1251 666583901 666584043 2.700000e-52 217.0
17 TraesCS3D01G036000 chr7A 93.007 143 7 2 1112 1251 705146306 705146448 5.840000e-49 206.0
18 TraesCS3D01G036000 chr7A 96.078 51 2 0 122 172 10877694 10877744 2.850000e-12 84.2
19 TraesCS3D01G036000 chr2D 87.556 225 19 5 158 381 441833697 441833913 7.390000e-63 252.0
20 TraesCS3D01G036000 chr2D 97.297 74 2 0 99 172 610169259 610169186 4.670000e-25 126.0
21 TraesCS3D01G036000 chr7B 88.325 197 16 4 158 347 412935803 412935999 3.460000e-56 230.0
22 TraesCS3D01G036000 chr5B 95.804 143 3 2 1112 1251 406044015 406043873 1.250000e-55 228.0
23 TraesCS3D01G036000 chr5B 84.483 232 28 3 156 380 152229304 152229534 5.790000e-54 222.0
24 TraesCS3D01G036000 chr5B 94.406 143 5 2 1112 1251 704089703 704089845 2.700000e-52 217.0
25 TraesCS3D01G036000 chr2A 95.804 143 3 2 1112 1251 566450802 566450660 1.250000e-55 228.0
26 TraesCS3D01G036000 chr6D 85.652 230 16 5 158 380 438297936 438297717 4.480000e-55 226.0
27 TraesCS3D01G036000 chr6B 81.215 181 32 2 203 381 57900309 57900129 1.290000e-30 145.0
28 TraesCS3D01G036000 chr7D 90.541 74 2 1 99 172 519193524 519193592 4.740000e-15 93.5
29 TraesCS3D01G036000 chr5A 90.541 74 2 1 99 172 59647416 59647484 4.740000e-15 93.5
30 TraesCS3D01G036000 chr2B 94.828 58 3 0 121 178 157297404 157297347 1.700000e-14 91.6
31 TraesCS3D01G036000 chr4A 89.189 74 3 1 99 172 469047380 469047448 2.210000e-13 87.9
32 TraesCS3D01G036000 chr1A 90.566 53 5 0 2574 2626 238679365 238679417 2.220000e-08 71.3
33 TraesCS3D01G036000 chr1A 89.362 47 5 0 2579 2625 238673062 238673108 4.810000e-05 60.2
34 TraesCS3D01G036000 chr1B 89.583 48 5 0 2579 2626 266110956 266111003 1.340000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G036000 chr3D 13102440 13106890 4450 False 8220.00 8220 100.0000 1 4451 1 chr3D.!!$F1 4450
1 TraesCS3D01G036000 chr3B 18773032 18777515 4483 False 1444.00 3768 86.6200 550 4451 3 chr3B.!!$F3 3901
2 TraesCS3D01G036000 chr3A 24206235 24211170 4935 True 869.75 1576 87.2945 488 3546 4 chr3A.!!$R2 3058


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.035176 GCTTGATTTGCAGGCCCAAA 59.965 50.000 9.27 9.27 43.24 3.28 F
1244 2538 0.035630 CAGCAACCTCCTCCTCCTTG 60.036 60.000 0.00 0.00 0.00 3.61 F
1254 2548 0.251634 CTCCTCCTTGTTGCTCTCCC 59.748 60.000 0.00 0.00 0.00 4.30 F
1281 2575 0.687354 ACGCTTCAATCCACTGACCT 59.313 50.000 0.00 0.00 0.00 3.85 F
1714 3057 1.144708 TGGTGCCTGGAATTTCAGTCA 59.855 47.619 12.86 2.83 33.14 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 2574 0.108615 ACGCCCTGAAGATCAACGAG 60.109 55.000 0.00 0.0 0.00 4.18 R
3019 4524 1.553704 TCAGCACATCAGAGCATGTCT 59.446 47.619 0.00 0.0 34.60 3.41 R
3024 4529 2.845363 TTCTTCAGCACATCAGAGCA 57.155 45.000 0.00 0.0 33.43 4.26 R
3025 4530 3.688185 TGAATTCTTCAGCACATCAGAGC 59.312 43.478 7.05 0.0 34.08 4.09 R
3552 5312 1.468914 GAAAACTGGACCGGATGCTTC 59.531 52.381 9.46 0.0 0.00 3.86 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.965379 TTGCTATTGGACTACCGTTGA 57.035 42.857 0.00 0.00 39.42 3.18
48 49 3.965379 TGCTATTGGACTACCGTTGAA 57.035 42.857 0.00 0.00 39.42 2.69
50 51 3.512329 TGCTATTGGACTACCGTTGAAGA 59.488 43.478 0.00 0.00 39.42 2.87
52 53 3.611766 ATTGGACTACCGTTGAAGAGG 57.388 47.619 0.00 0.00 39.42 3.69
53 54 1.263356 TGGACTACCGTTGAAGAGGG 58.737 55.000 0.00 0.00 39.42 4.30
55 56 1.622312 GGACTACCGTTGAAGAGGGTT 59.378 52.381 0.00 0.00 43.86 4.11
56 57 2.038164 GGACTACCGTTGAAGAGGGTTT 59.962 50.000 0.00 0.00 43.86 3.27
57 58 3.495629 GGACTACCGTTGAAGAGGGTTTT 60.496 47.826 0.00 0.00 43.86 2.43
58 59 4.132336 GACTACCGTTGAAGAGGGTTTTT 58.868 43.478 0.00 0.00 43.86 1.94
59 60 5.294734 ACTACCGTTGAAGAGGGTTTTTA 57.705 39.130 0.00 0.00 43.86 1.52
60 61 5.303165 ACTACCGTTGAAGAGGGTTTTTAG 58.697 41.667 0.00 0.00 43.86 1.85
61 62 4.426736 ACCGTTGAAGAGGGTTTTTAGA 57.573 40.909 0.00 0.00 43.86 2.10
62 63 4.132336 ACCGTTGAAGAGGGTTTTTAGAC 58.868 43.478 0.00 0.00 43.86 2.59
63 64 3.501062 CCGTTGAAGAGGGTTTTTAGACC 59.499 47.826 0.00 0.00 39.04 3.85
71 72 4.452825 GAGGGTTTTTAGACCTCCTATGC 58.547 47.826 0.00 0.00 43.93 3.14
74 75 4.325109 GGGTTTTTAGACCTCCTATGCCTT 60.325 45.833 0.00 0.00 39.71 4.35
75 76 5.104235 GGGTTTTTAGACCTCCTATGCCTTA 60.104 44.000 0.00 0.00 39.71 2.69
76 77 6.420638 GGTTTTTAGACCTCCTATGCCTTAA 58.579 40.000 0.00 0.00 36.73 1.85
77 78 6.888088 GGTTTTTAGACCTCCTATGCCTTAAA 59.112 38.462 0.00 0.00 36.73 1.52
78 79 7.395206 GGTTTTTAGACCTCCTATGCCTTAAAA 59.605 37.037 0.00 0.00 36.73 1.52
79 80 8.799367 GTTTTTAGACCTCCTATGCCTTAAAAA 58.201 33.333 0.00 0.00 0.00 1.94
82 83 3.617284 ACCTCCTATGCCTTAAAAACGG 58.383 45.455 0.00 0.00 0.00 4.44
83 84 3.009805 ACCTCCTATGCCTTAAAAACGGT 59.990 43.478 0.00 0.00 0.00 4.83
84 85 4.225717 ACCTCCTATGCCTTAAAAACGGTA 59.774 41.667 0.00 0.00 0.00 4.02
85 86 5.104235 ACCTCCTATGCCTTAAAAACGGTAT 60.104 40.000 0.00 0.00 0.00 2.73
86 87 5.238650 CCTCCTATGCCTTAAAAACGGTATG 59.761 44.000 0.00 0.00 0.00 2.39
87 88 5.747342 TCCTATGCCTTAAAAACGGTATGT 58.253 37.500 0.00 0.00 0.00 2.29
88 89 5.587043 TCCTATGCCTTAAAAACGGTATGTG 59.413 40.000 0.00 0.00 0.00 3.21
89 90 3.562567 TGCCTTAAAAACGGTATGTGC 57.437 42.857 0.00 0.00 0.00 4.57
90 91 2.229302 TGCCTTAAAAACGGTATGTGCC 59.771 45.455 0.00 0.00 0.00 5.01
91 92 2.416296 GCCTTAAAAACGGTATGTGCCC 60.416 50.000 0.00 0.00 0.00 5.36
92 93 3.086282 CCTTAAAAACGGTATGTGCCCT 58.914 45.455 0.00 0.00 0.00 5.19
94 95 4.701171 CCTTAAAAACGGTATGTGCCCTAA 59.299 41.667 0.00 0.00 0.00 2.69
95 96 5.358725 CCTTAAAAACGGTATGTGCCCTAAT 59.641 40.000 0.00 0.00 0.00 1.73
96 97 6.543100 CCTTAAAAACGGTATGTGCCCTAATA 59.457 38.462 0.00 0.00 0.00 0.98
99 100 9.624373 TTAAAAACGGTATGTGCCCTAATATTA 57.376 29.630 0.00 0.00 0.00 0.98
100 101 8.700439 AAAAACGGTATGTGCCCTAATATTAT 57.300 30.769 0.00 0.00 0.00 1.28
101 102 9.796180 AAAAACGGTATGTGCCCTAATATTATA 57.204 29.630 0.00 0.00 0.00 0.98
105 106 8.038944 ACGGTATGTGCCCTAATATTATACTTG 58.961 37.037 0.00 0.00 0.00 3.16
106 107 7.494625 CGGTATGTGCCCTAATATTATACTTGG 59.505 40.741 0.00 0.00 0.00 3.61
107 108 7.282450 GGTATGTGCCCTAATATTATACTTGGC 59.718 40.741 0.00 4.79 38.13 4.52
109 110 5.073827 TGTGCCCTAATATTATACTTGGCCA 59.926 40.000 0.00 0.00 36.82 5.36
111 112 7.037225 TGTGCCCTAATATTATACTTGGCCATA 60.037 37.037 6.09 0.00 36.82 2.74
113 114 8.217799 TGCCCTAATATTATACTTGGCCATATC 58.782 37.037 6.09 0.00 36.82 1.63
116 117 9.698309 CCTAATATTATACTTGGCCATATCTCG 57.302 37.037 6.09 0.00 0.00 4.04
117 118 9.698309 CTAATATTATACTTGGCCATATCTCGG 57.302 37.037 6.09 0.00 0.00 4.63
123 124 4.394712 GCCATATCTCGGGCCGGG 62.395 72.222 27.98 25.48 44.53 5.73
124 125 4.394712 CCATATCTCGGGCCGGGC 62.395 72.222 27.98 22.00 0.00 6.13
155 156 3.680786 GCCCGGTGCTGAAAACCC 61.681 66.667 0.00 0.00 36.87 4.11
156 157 2.203422 CCCGGTGCTGAAAACCCA 60.203 61.111 0.00 0.00 33.88 4.51
157 158 2.268076 CCCGGTGCTGAAAACCCAG 61.268 63.158 0.00 0.00 33.88 4.45
158 159 2.268076 CCGGTGCTGAAAACCCAGG 61.268 63.158 0.00 0.00 33.88 4.45
159 160 2.919494 CGGTGCTGAAAACCCAGGC 61.919 63.158 0.00 0.00 33.88 4.85
161 162 2.203625 TGCTGAAAACCCAGGCCC 60.204 61.111 0.00 0.00 34.82 5.80
162 163 3.373565 GCTGAAAACCCAGGCCCG 61.374 66.667 0.00 0.00 34.82 6.13
164 165 1.675641 CTGAAAACCCAGGCCCGAG 60.676 63.158 0.00 0.00 0.00 4.63
165 166 3.062466 GAAAACCCAGGCCCGAGC 61.062 66.667 0.00 0.00 38.76 5.03
179 180 4.785453 GAGCCCGGCCTGAACCTG 62.785 72.222 5.55 0.00 0.00 4.00
182 183 3.646715 CCCGGCCTGAACCTGGAA 61.647 66.667 0.00 0.00 36.21 3.53
183 184 2.434331 CCGGCCTGAACCTGGAAA 59.566 61.111 0.00 0.00 0.00 3.13
184 185 1.228429 CCGGCCTGAACCTGGAAAA 60.228 57.895 0.00 0.00 0.00 2.29
188 189 1.536073 GCCTGAACCTGGAAAAGCCC 61.536 60.000 0.00 0.00 34.97 5.19
189 190 1.244019 CCTGAACCTGGAAAAGCCCG 61.244 60.000 0.00 0.00 34.97 6.13
190 191 0.250727 CTGAACCTGGAAAAGCCCGA 60.251 55.000 0.00 0.00 34.97 5.14
191 192 0.536460 TGAACCTGGAAAAGCCCGAC 60.536 55.000 0.00 0.00 34.97 4.79
192 193 0.536460 GAACCTGGAAAAGCCCGACA 60.536 55.000 0.00 0.00 34.97 4.35
193 194 0.822121 AACCTGGAAAAGCCCGACAC 60.822 55.000 0.00 0.00 34.97 3.67
225 226 1.444836 CGACCACGGCTAAAAATCCA 58.555 50.000 0.00 0.00 35.72 3.41
227 228 2.422127 CGACCACGGCTAAAAATCCATT 59.578 45.455 0.00 0.00 35.72 3.16
228 229 3.119637 CGACCACGGCTAAAAATCCATTT 60.120 43.478 0.00 0.00 35.72 2.32
229 230 4.617298 CGACCACGGCTAAAAATCCATTTT 60.617 41.667 0.00 0.00 39.02 1.82
230 231 4.816392 ACCACGGCTAAAAATCCATTTTC 58.184 39.130 0.00 0.00 41.42 2.29
231 232 4.282195 ACCACGGCTAAAAATCCATTTTCA 59.718 37.500 0.00 0.00 41.42 2.69
233 234 5.226396 CACGGCTAAAAATCCATTTTCACA 58.774 37.500 0.00 0.00 41.42 3.58
237 238 4.631377 GCTAAAAATCCATTTTCACAGGCC 59.369 41.667 0.00 0.00 41.42 5.19
239 240 1.185315 AATCCATTTTCACAGGCCCG 58.815 50.000 0.00 0.00 0.00 6.13
240 241 0.331278 ATCCATTTTCACAGGCCCGA 59.669 50.000 0.00 0.00 0.00 5.14
241 242 0.322456 TCCATTTTCACAGGCCCGAG 60.322 55.000 0.00 0.00 0.00 4.63
242 243 1.508088 CATTTTCACAGGCCCGAGC 59.492 57.895 0.00 0.00 38.76 5.03
273 274 3.187058 CCCGTCGGGCTTGATTTG 58.813 61.111 19.48 0.00 35.35 2.32
275 276 2.331893 CCGTCGGGCTTGATTTGCA 61.332 57.895 2.34 0.00 0.00 4.08
276 277 1.135315 CGTCGGGCTTGATTTGCAG 59.865 57.895 0.00 0.00 0.00 4.41
277 278 1.508088 GTCGGGCTTGATTTGCAGG 59.492 57.895 0.00 0.00 0.00 4.85
281 282 3.379880 GCTTGATTTGCAGGCCCA 58.620 55.556 0.00 0.00 43.24 5.36
282 283 1.672898 GCTTGATTTGCAGGCCCAA 59.327 52.632 0.00 0.00 43.24 4.12
283 284 0.035176 GCTTGATTTGCAGGCCCAAA 59.965 50.000 9.27 9.27 43.24 3.28
284 285 1.799544 CTTGATTTGCAGGCCCAAAC 58.200 50.000 9.07 5.18 37.51 2.93
285 286 0.396060 TTGATTTGCAGGCCCAAACC 59.604 50.000 9.07 0.91 37.51 3.27
286 287 1.296392 GATTTGCAGGCCCAAACCC 59.704 57.895 9.07 2.19 37.51 4.11
287 288 2.505635 GATTTGCAGGCCCAAACCCG 62.506 60.000 9.07 0.00 37.51 5.28
310 311 0.813610 CGATGGCATGTTCGGGCTTA 60.814 55.000 3.81 0.00 0.00 3.09
311 312 0.947244 GATGGCATGTTCGGGCTTAG 59.053 55.000 3.81 0.00 0.00 2.18
325 326 2.694616 TTAGCCAGGCCCGGGATT 60.695 61.111 29.31 8.31 0.00 3.01
326 327 2.284515 CTTAGCCAGGCCCGGGATTT 62.285 60.000 29.31 5.09 0.00 2.17
330 331 2.828549 CAGGCCCGGGATTTTCGG 60.829 66.667 29.31 4.28 46.43 4.30
335 336 2.828549 CCGGGATTTTCGGGCTGG 60.829 66.667 0.00 0.00 43.45 4.85
336 337 2.828549 CGGGATTTTCGGGCTGGG 60.829 66.667 0.00 0.00 0.00 4.45
337 338 2.359011 GGGATTTTCGGGCTGGGT 59.641 61.111 0.00 0.00 0.00 4.51
338 339 1.753078 GGGATTTTCGGGCTGGGTC 60.753 63.158 0.00 0.00 0.00 4.46
340 341 2.045340 ATTTTCGGGCTGGGTCGG 60.045 61.111 0.00 0.00 0.00 4.79
380 381 4.468689 GCCCGTGGCCAGGTCTAC 62.469 72.222 23.21 6.59 44.06 2.59
381 382 3.782443 CCCGTGGCCAGGTCTACC 61.782 72.222 23.21 0.62 0.00 3.18
385 386 1.120530 CGTGGCCAGGTCTACCTATT 58.879 55.000 17.47 0.00 46.65 1.73
387 388 2.897969 CGTGGCCAGGTCTACCTATTAT 59.102 50.000 17.47 0.00 46.65 1.28
388 389 4.084287 CGTGGCCAGGTCTACCTATTATA 58.916 47.826 17.47 0.00 46.65 0.98
389 390 4.710375 CGTGGCCAGGTCTACCTATTATAT 59.290 45.833 17.47 0.00 46.65 0.86
390 391 5.394224 CGTGGCCAGGTCTACCTATTATATG 60.394 48.000 17.47 0.00 46.65 1.78
391 392 5.030147 TGGCCAGGTCTACCTATTATATGG 58.970 45.833 0.00 0.00 46.65 2.74
393 394 4.717280 GCCAGGTCTACCTATTATATGGCT 59.283 45.833 15.43 0.00 46.65 4.75
394 395 5.395768 GCCAGGTCTACCTATTATATGGCTG 60.396 48.000 15.43 0.00 46.65 4.85
395 396 5.395768 CCAGGTCTACCTATTATATGGCTGC 60.396 48.000 0.25 0.00 46.65 5.25
397 398 6.607600 CAGGTCTACCTATTATATGGCTGCTA 59.392 42.308 0.25 0.00 46.65 3.49
400 401 7.928706 GGTCTACCTATTATATGGCTGCTATTG 59.071 40.741 3.18 0.00 0.00 1.90
401 402 7.928706 GTCTACCTATTATATGGCTGCTATTGG 59.071 40.741 3.18 0.95 0.00 3.16
403 404 6.893583 ACCTATTATATGGCTGCTATTGGAG 58.106 40.000 3.18 0.00 34.56 3.86
404 405 6.673978 ACCTATTATATGGCTGCTATTGGAGA 59.326 38.462 3.18 0.00 33.10 3.71
405 406 7.349330 ACCTATTATATGGCTGCTATTGGAGAT 59.651 37.037 3.18 0.00 33.10 2.75
406 407 7.660617 CCTATTATATGGCTGCTATTGGAGATG 59.339 40.741 3.18 0.00 33.10 2.90
407 408 1.906990 ATGGCTGCTATTGGAGATGC 58.093 50.000 0.00 0.00 33.10 3.91
409 410 1.202734 TGGCTGCTATTGGAGATGCTC 60.203 52.381 0.00 0.00 33.10 4.26
410 411 1.072015 GGCTGCTATTGGAGATGCTCT 59.928 52.381 0.00 0.00 33.10 4.09
411 412 2.301296 GGCTGCTATTGGAGATGCTCTA 59.699 50.000 0.00 0.00 33.10 2.43
414 415 3.982475 TGCTATTGGAGATGCTCTAACG 58.018 45.455 0.00 0.00 34.03 3.18
415 416 3.243873 TGCTATTGGAGATGCTCTAACGG 60.244 47.826 0.00 0.00 34.03 4.44
416 417 2.918712 ATTGGAGATGCTCTAACGGG 57.081 50.000 0.00 0.00 34.03 5.28
417 418 0.178068 TTGGAGATGCTCTAACGGGC 59.822 55.000 0.00 0.00 0.00 6.13
418 419 1.300233 GGAGATGCTCTAACGGGCG 60.300 63.158 0.00 0.00 0.00 6.13
420 421 0.595310 GAGATGCTCTAACGGGCGAC 60.595 60.000 0.00 0.00 0.00 5.19
421 422 1.141019 GATGCTCTAACGGGCGACA 59.859 57.895 0.00 0.00 0.00 4.35
422 423 1.146358 GATGCTCTAACGGGCGACAC 61.146 60.000 0.00 0.00 0.00 3.67
424 425 2.092882 GCTCTAACGGGCGACACAC 61.093 63.158 0.00 0.00 0.00 3.82
425 426 1.585006 CTCTAACGGGCGACACACT 59.415 57.895 0.00 0.00 0.00 3.55
426 427 0.038526 CTCTAACGGGCGACACACTT 60.039 55.000 0.00 0.00 0.00 3.16
427 428 0.319211 TCTAACGGGCGACACACTTG 60.319 55.000 0.00 0.00 0.00 3.16
428 429 0.599204 CTAACGGGCGACACACTTGT 60.599 55.000 0.00 0.00 39.32 3.16
438 439 3.706055 CACACTTGTGCTACCCTGT 57.294 52.632 0.10 0.00 39.39 4.00
439 440 1.229428 CACACTTGTGCTACCCTGTG 58.771 55.000 0.10 0.00 39.39 3.66
440 441 0.837272 ACACTTGTGCTACCCTGTGT 59.163 50.000 0.10 0.00 34.38 3.72
443 444 1.202651 ACTTGTGCTACCCTGTGTGTC 60.203 52.381 0.00 0.00 0.00 3.67
445 446 0.105964 TGTGCTACCCTGTGTGTCAC 59.894 55.000 0.00 0.00 33.68 3.67
446 447 0.944311 GTGCTACCCTGTGTGTCACG 60.944 60.000 0.00 0.00 37.14 4.35
447 448 1.366366 GCTACCCTGTGTGTCACGT 59.634 57.895 0.00 0.00 37.14 4.49
448 449 0.666577 GCTACCCTGTGTGTCACGTC 60.667 60.000 0.00 0.00 37.14 4.34
450 451 2.410638 TACCCTGTGTGTCACGTCGC 62.411 60.000 0.00 0.00 37.14 5.19
451 452 2.027605 CCTGTGTGTCACGTCGCT 59.972 61.111 0.00 0.00 37.14 4.93
452 453 2.302952 CCTGTGTGTCACGTCGCTG 61.303 63.158 0.00 0.00 37.14 5.18
453 454 1.299089 CTGTGTGTCACGTCGCTGA 60.299 57.895 0.00 0.00 37.14 4.26
455 456 0.249280 TGTGTGTCACGTCGCTGATT 60.249 50.000 0.00 0.00 37.14 2.57
457 458 0.249280 TGTGTCACGTCGCTGATTGT 60.249 50.000 0.00 0.00 0.00 2.71
458 459 0.435008 GTGTCACGTCGCTGATTGTC 59.565 55.000 0.00 0.00 0.00 3.18
459 460 0.313987 TGTCACGTCGCTGATTGTCT 59.686 50.000 0.00 0.00 0.00 3.41
461 462 2.030628 TGTCACGTCGCTGATTGTCTTA 60.031 45.455 0.00 0.00 0.00 2.10
464 465 3.427528 TCACGTCGCTGATTGTCTTAAAC 59.572 43.478 0.00 0.00 0.00 2.01
465 466 2.735134 ACGTCGCTGATTGTCTTAAACC 59.265 45.455 0.00 0.00 0.00 3.27
466 467 2.993899 CGTCGCTGATTGTCTTAAACCT 59.006 45.455 0.00 0.00 0.00 3.50
467 468 3.181530 CGTCGCTGATTGTCTTAAACCTG 60.182 47.826 0.00 0.00 0.00 4.00
469 470 4.213482 GTCGCTGATTGTCTTAAACCTGTT 59.787 41.667 0.00 0.00 0.00 3.16
471 472 5.992829 TCGCTGATTGTCTTAAACCTGTTTA 59.007 36.000 0.00 0.00 34.23 2.01
474 475 6.548441 TGATTGTCTTAAACCTGTTTACCG 57.452 37.500 2.08 0.00 35.05 4.02
475 476 5.470777 TGATTGTCTTAAACCTGTTTACCGG 59.529 40.000 0.00 0.00 35.05 5.28
476 477 4.420522 TGTCTTAAACCTGTTTACCGGT 57.579 40.909 13.98 13.98 35.05 5.28
483 484 4.374843 AACCTGTTTACCGGTTTGTTTC 57.625 40.909 15.04 0.00 40.47 2.78
484 485 3.354467 ACCTGTTTACCGGTTTGTTTCA 58.646 40.909 15.04 3.45 0.00 2.69
486 487 4.037089 ACCTGTTTACCGGTTTGTTTCATC 59.963 41.667 15.04 0.00 0.00 2.92
487 488 4.036971 CCTGTTTACCGGTTTGTTTCATCA 59.963 41.667 15.04 0.00 0.00 3.07
488 489 5.450688 CCTGTTTACCGGTTTGTTTCATCAA 60.451 40.000 15.04 0.00 0.00 2.57
489 490 5.962433 TGTTTACCGGTTTGTTTCATCAAA 58.038 33.333 15.04 0.00 35.36 2.69
490 491 6.574350 TGTTTACCGGTTTGTTTCATCAAAT 58.426 32.000 15.04 0.00 39.09 2.32
491 492 6.477033 TGTTTACCGGTTTGTTTCATCAAATG 59.523 34.615 15.04 0.00 39.09 2.32
492 493 4.927978 ACCGGTTTGTTTCATCAAATGA 57.072 36.364 0.00 0.00 39.09 2.57
534 1782 6.127730 GCCCCTCAATTCGAAAAGAAAATAGA 60.128 38.462 0.00 0.00 42.91 1.98
535 1783 7.576856 GCCCCTCAATTCGAAAAGAAAATAGAA 60.577 37.037 0.00 0.00 42.91 2.10
536 1784 7.970614 CCCCTCAATTCGAAAAGAAAATAGAAG 59.029 37.037 0.00 0.00 42.91 2.85
537 1785 7.486232 CCCTCAATTCGAAAAGAAAATAGAAGC 59.514 37.037 0.00 0.00 42.91 3.86
538 1786 8.239998 CCTCAATTCGAAAAGAAAATAGAAGCT 58.760 33.333 0.00 0.00 42.91 3.74
539 1787 9.271738 CTCAATTCGAAAAGAAAATAGAAGCTC 57.728 33.333 0.00 0.00 42.91 4.09
540 1788 8.237267 TCAATTCGAAAAGAAAATAGAAGCTCC 58.763 33.333 0.00 0.00 42.91 4.70
541 1789 7.929941 ATTCGAAAAGAAAATAGAAGCTCCT 57.070 32.000 0.00 0.00 42.91 3.69
543 1791 5.875359 TCGAAAAGAAAATAGAAGCTCCTCC 59.125 40.000 0.00 0.00 0.00 4.30
544 1792 5.220491 CGAAAAGAAAATAGAAGCTCCTCCG 60.220 44.000 0.00 0.00 0.00 4.63
546 1794 5.622346 AAGAAAATAGAAGCTCCTCCGAT 57.378 39.130 0.00 0.00 0.00 4.18
547 1795 4.954875 AGAAAATAGAAGCTCCTCCGATG 58.045 43.478 0.00 0.00 0.00 3.84
548 1796 4.651503 AGAAAATAGAAGCTCCTCCGATGA 59.348 41.667 0.00 0.00 0.00 2.92
549 1797 5.129485 AGAAAATAGAAGCTCCTCCGATGAA 59.871 40.000 0.00 0.00 0.00 2.57
550 1798 4.599047 AATAGAAGCTCCTCCGATGAAG 57.401 45.455 0.00 0.00 0.00 3.02
700 1960 1.069500 CGGTTGACGTTGAATTCCACC 60.069 52.381 2.27 0.00 37.93 4.61
802 2089 2.495270 ACAGAGAGTGGTATGTGAGCAG 59.505 50.000 0.00 0.00 35.85 4.24
803 2090 2.757314 CAGAGAGTGGTATGTGAGCAGA 59.243 50.000 0.00 0.00 35.85 4.26
804 2091 3.023119 AGAGAGTGGTATGTGAGCAGAG 58.977 50.000 0.00 0.00 35.85 3.35
805 2092 1.480137 AGAGTGGTATGTGAGCAGAGC 59.520 52.381 0.00 0.00 35.85 4.09
806 2093 1.205655 GAGTGGTATGTGAGCAGAGCA 59.794 52.381 0.00 0.00 41.27 4.26
926 2214 4.135153 GAGCGAGCGAGCAGGGAA 62.135 66.667 9.01 0.00 40.15 3.97
927 2215 4.140599 AGCGAGCGAGCAGGGAAG 62.141 66.667 9.01 0.00 40.15 3.46
928 2216 4.443266 GCGAGCGAGCAGGGAAGT 62.443 66.667 0.00 0.00 37.05 3.01
943 2231 2.614229 GGGAAGTCTTTCTCTGCTGTCC 60.614 54.545 0.00 0.00 30.74 4.02
984 2274 3.181449 TGGTCTTTGGTTGTGCTAGCTAA 60.181 43.478 17.23 8.54 0.00 3.09
989 2279 1.616865 TGGTTGTGCTAGCTAACTCGT 59.383 47.619 24.50 0.00 0.00 4.18
1182 2476 1.446272 CTTCTCCGACGGCAACCTC 60.446 63.158 9.66 0.00 0.00 3.85
1226 2520 0.320421 GTCTACAAGGCAAGCGACCA 60.320 55.000 0.00 0.00 0.00 4.02
1227 2521 0.037326 TCTACAAGGCAAGCGACCAG 60.037 55.000 0.00 0.00 0.00 4.00
1238 2532 2.266055 CGACCAGCAACCTCCTCC 59.734 66.667 0.00 0.00 0.00 4.30
1241 2535 1.904990 GACCAGCAACCTCCTCCTCC 61.905 65.000 0.00 0.00 0.00 4.30
1242 2536 1.614824 CCAGCAACCTCCTCCTCCT 60.615 63.158 0.00 0.00 0.00 3.69
1243 2537 1.204113 CCAGCAACCTCCTCCTCCTT 61.204 60.000 0.00 0.00 0.00 3.36
1244 2538 0.035630 CAGCAACCTCCTCCTCCTTG 60.036 60.000 0.00 0.00 0.00 3.61
1246 2540 0.402121 GCAACCTCCTCCTCCTTGTT 59.598 55.000 0.00 0.00 0.00 2.83
1247 2541 1.884067 GCAACCTCCTCCTCCTTGTTG 60.884 57.143 0.00 0.00 36.92 3.33
1248 2542 0.402121 AACCTCCTCCTCCTTGTTGC 59.598 55.000 0.00 0.00 0.00 4.17
1249 2543 0.474660 ACCTCCTCCTCCTTGTTGCT 60.475 55.000 0.00 0.00 0.00 3.91
1251 2545 1.274712 CTCCTCCTCCTTGTTGCTCT 58.725 55.000 0.00 0.00 0.00 4.09
1254 2548 0.251634 CTCCTCCTTGTTGCTCTCCC 59.748 60.000 0.00 0.00 0.00 4.30
1255 2549 1.201429 TCCTCCTTGTTGCTCTCCCC 61.201 60.000 0.00 0.00 0.00 4.81
1272 2566 4.520846 CCGGCGCACGCTTCAATC 62.521 66.667 15.36 0.00 42.52 2.67
1274 2568 3.430862 GGCGCACGCTTCAATCCA 61.431 61.111 15.36 0.00 41.60 3.41
1275 2569 2.202349 GCGCACGCTTCAATCCAC 60.202 61.111 7.96 0.00 38.26 4.02
1277 2571 1.133253 CGCACGCTTCAATCCACTG 59.867 57.895 0.00 0.00 0.00 3.66
1278 2572 1.291184 CGCACGCTTCAATCCACTGA 61.291 55.000 0.00 0.00 0.00 3.41
1280 2574 0.798776 CACGCTTCAATCCACTGACC 59.201 55.000 0.00 0.00 0.00 4.02
1281 2575 0.687354 ACGCTTCAATCCACTGACCT 59.313 50.000 0.00 0.00 0.00 3.85
1282 2576 1.338200 ACGCTTCAATCCACTGACCTC 60.338 52.381 0.00 0.00 0.00 3.85
1283 2577 1.363744 GCTTCAATCCACTGACCTCG 58.636 55.000 0.00 0.00 0.00 4.63
1284 2578 1.338200 GCTTCAATCCACTGACCTCGT 60.338 52.381 0.00 0.00 0.00 4.18
1285 2579 2.872038 GCTTCAATCCACTGACCTCGTT 60.872 50.000 0.00 0.00 0.00 3.85
1286 2580 2.455674 TCAATCCACTGACCTCGTTG 57.544 50.000 0.00 0.00 0.00 4.10
1291 2585 2.248248 TCCACTGACCTCGTTGATCTT 58.752 47.619 0.00 0.00 0.00 2.40
1468 2780 2.354704 CCAAAAGATGCTCGTCTACCCA 60.355 50.000 0.00 0.00 0.00 4.51
1617 2960 3.465871 CAAAACTTGGGTGGGTTTCATG 58.534 45.455 0.00 0.00 35.02 3.07
1621 2964 2.042979 ACTTGGGTGGGTTTCATGCTAT 59.957 45.455 0.00 0.00 0.00 2.97
1625 2968 2.099098 GGGTGGGTTTCATGCTATTTCG 59.901 50.000 0.00 0.00 0.00 3.46
1627 2970 1.748493 TGGGTTTCATGCTATTTCGGC 59.252 47.619 0.00 0.00 0.00 5.54
1669 3012 8.084073 TCTGTGTCCAATCTGAAAATCAAAATC 58.916 33.333 0.00 0.00 0.00 2.17
1672 3015 6.862608 TGTCCAATCTGAAAATCAAAATCACG 59.137 34.615 0.00 0.00 0.00 4.35
1703 3046 2.489329 CAGTAAATTCAGTGGTGCCTGG 59.511 50.000 0.00 0.00 33.14 4.45
1714 3057 1.144708 TGGTGCCTGGAATTTCAGTCA 59.855 47.619 12.86 2.83 33.14 3.41
1718 3061 4.442753 GGTGCCTGGAATTTCAGTCAAAAA 60.443 41.667 12.86 0.00 33.14 1.94
1788 3131 6.347240 GCATTCAGTCTGTTACAAGTCTTGAG 60.347 42.308 19.53 6.16 0.00 3.02
1799 3142 4.384056 ACAAGTCTTGAGTTGATGTCAGG 58.616 43.478 19.53 0.00 0.00 3.86
1800 3143 4.141620 ACAAGTCTTGAGTTGATGTCAGGT 60.142 41.667 19.53 0.00 0.00 4.00
1801 3144 5.070446 ACAAGTCTTGAGTTGATGTCAGGTA 59.930 40.000 19.53 0.00 0.00 3.08
1802 3145 5.398603 AGTCTTGAGTTGATGTCAGGTAG 57.601 43.478 0.00 0.00 0.00 3.18
1803 3146 4.835615 AGTCTTGAGTTGATGTCAGGTAGT 59.164 41.667 0.00 0.00 0.00 2.73
1811 3154 8.105197 TGAGTTGATGTCAGGTAGTACTAGTAA 58.895 37.037 3.61 0.00 0.00 2.24
1839 3182 1.532868 GGCCTTTGCGTGCTCATATAG 59.467 52.381 0.00 0.00 38.85 1.31
1931 3274 3.569701 AGGTTCAAATGTCACATCCACAC 59.430 43.478 0.00 0.00 0.00 3.82
2049 3399 4.557301 GGTGCGATTTGATTTAAAACGGAG 59.443 41.667 5.89 0.00 43.25 4.63
2065 3415 2.028130 CGGAGTATGCCTCTTGAGTCT 58.972 52.381 0.00 0.00 40.30 3.24
2203 3690 1.797635 GCTTGTCTGAGTTCACTCTGC 59.202 52.381 8.41 5.30 43.25 4.26
2220 3718 6.376299 TCACTCTGCTCTGCAAAATCATAAAT 59.624 34.615 0.00 0.00 38.41 1.40
2269 3767 8.704668 TCAATTCCTGCAAAGTAGATCAGTATA 58.295 33.333 0.00 0.00 0.00 1.47
2372 3872 2.094390 AGCATGTGCCAGCAAATTACAG 60.094 45.455 0.57 0.00 43.38 2.74
2401 3901 4.946784 ACAATCGATTCCTGCAAACTAC 57.053 40.909 7.92 0.00 0.00 2.73
2402 3902 4.579869 ACAATCGATTCCTGCAAACTACT 58.420 39.130 7.92 0.00 0.00 2.57
2455 3955 2.417933 CTGTTATCTGAACCTGCACTGC 59.582 50.000 0.00 0.00 0.00 4.40
2461 3962 2.281692 AACCTGCACTGCATCGCA 60.282 55.556 3.64 9.56 38.13 5.10
2517 4018 2.036604 CTGGCCAAAACGGTACCAAATT 59.963 45.455 13.54 0.00 36.97 1.82
2616 4117 2.081212 CAACGTGCTCCTCGACGAC 61.081 63.158 0.00 0.00 38.94 4.34
2673 4174 1.870016 GCTCTTCCTCGAAGACGCG 60.870 63.158 3.53 3.53 42.78 6.01
2682 4183 2.500369 GAAGACGCGACGCACGTA 60.500 61.111 21.35 0.00 45.24 3.57
2727 4228 1.256812 AGTAAGCCCCAAACACATGC 58.743 50.000 0.00 0.00 0.00 4.06
2752 4253 6.868339 CACCACTTCCATTCAATAGGTTTTTC 59.132 38.462 0.00 0.00 0.00 2.29
2753 4254 6.782494 ACCACTTCCATTCAATAGGTTTTTCT 59.218 34.615 0.00 0.00 0.00 2.52
2754 4255 7.290014 ACCACTTCCATTCAATAGGTTTTTCTT 59.710 33.333 0.00 0.00 0.00 2.52
3014 4519 8.277713 CCTGCATTTTACTTTTTCAACATGAAG 58.722 33.333 0.00 0.00 37.70 3.02
3023 4528 7.050377 ACTTTTTCAACATGAAGAGAGAGACA 58.950 34.615 0.00 0.00 37.70 3.41
3024 4529 7.718753 ACTTTTTCAACATGAAGAGAGAGACAT 59.281 33.333 0.00 0.00 37.70 3.06
3025 4530 7.430992 TTTTCAACATGAAGAGAGAGACATG 57.569 36.000 0.00 0.00 43.56 3.21
3026 4531 4.502016 TCAACATGAAGAGAGAGACATGC 58.498 43.478 0.00 0.00 42.28 4.06
3027 4532 4.222366 TCAACATGAAGAGAGAGACATGCT 59.778 41.667 0.00 0.00 42.28 3.79
3028 4533 4.389890 ACATGAAGAGAGAGACATGCTC 57.610 45.455 0.00 8.56 42.28 4.26
3094 4630 3.672295 CTGTCAGAGGAAGGCCGGC 62.672 68.421 21.18 21.18 39.96 6.13
3393 4929 1.084370 CCTCGACGCTGGGAAACATC 61.084 60.000 0.00 0.00 0.00 3.06
3543 5079 3.203263 AGATCTAGTACAGGAGGCAGTGA 59.797 47.826 0.00 0.00 0.00 3.41
3546 5082 1.198713 AGTACAGGAGGCAGTGATGG 58.801 55.000 0.00 0.00 0.00 3.51
3552 5312 0.393537 GGAGGCAGTGATGGTTCCAG 60.394 60.000 0.00 0.00 0.00 3.86
3580 5340 2.224784 CCGGTCCAGTTTTCTTTTACCG 59.775 50.000 0.00 0.00 42.01 4.02
3586 5346 7.257003 GGTCCAGTTTTCTTTTACCGTTTTTA 58.743 34.615 0.00 0.00 0.00 1.52
3612 5372 6.239217 AGCTTTTCCATTTTCTCCTGTTTT 57.761 33.333 0.00 0.00 0.00 2.43
3613 5373 7.360113 AGCTTTTCCATTTTCTCCTGTTTTA 57.640 32.000 0.00 0.00 0.00 1.52
3643 5403 8.885494 TGTTCAGAAATTTCAGGGTTTATTTG 57.115 30.769 19.99 5.79 0.00 2.32
3644 5404 7.930865 TGTTCAGAAATTTCAGGGTTTATTTGG 59.069 33.333 19.99 0.00 0.00 3.28
3648 5408 9.506018 CAGAAATTTCAGGGTTTATTTGGAAAT 57.494 29.630 19.99 0.00 36.75 2.17
3649 5409 9.725019 AGAAATTTCAGGGTTTATTTGGAAATC 57.275 29.630 19.99 0.00 34.81 2.17
3658 5418 8.659527 AGGGTTTATTTGGAAATCAGAAAATGT 58.340 29.630 0.00 0.00 0.00 2.71
3718 5480 8.319143 AGAATGATTCTTTTTGCAAAATGGAG 57.681 30.769 27.78 21.11 36.36 3.86
3748 5510 3.726291 AAGTTTCAACATTGGTTCGGG 57.274 42.857 0.00 0.00 34.21 5.14
3749 5511 2.938838 AGTTTCAACATTGGTTCGGGA 58.061 42.857 0.00 0.00 34.21 5.14
3762 5524 6.610741 TTGGTTCGGGATTTTTGAAATTTG 57.389 33.333 0.00 0.00 0.00 2.32
3768 5530 4.514816 CGGGATTTTTGAAATTTGCTTGGT 59.485 37.500 0.00 0.00 0.00 3.67
3790 5552 9.844257 TTGGTAATTTCAAATTTGGTTCAGAAT 57.156 25.926 17.90 6.65 0.00 2.40
3964 5752 1.970640 ACATCTCACTACAGTGCCACA 59.029 47.619 4.43 0.00 45.25 4.17
3965 5753 2.568956 ACATCTCACTACAGTGCCACAT 59.431 45.455 4.43 0.00 45.25 3.21
3967 5755 1.081892 CTCACTACAGTGCCACATGC 58.918 55.000 4.43 0.00 45.25 4.06
3969 5757 0.606130 CACTACAGTGCCACATGCCA 60.606 55.000 0.00 0.00 39.39 4.92
3974 5762 1.559219 ACAGTGCCACATGCCACTATA 59.441 47.619 12.24 0.00 40.16 1.31
4030 5818 4.628333 CCTGTGCAAAATGCTTCCTATTTG 59.372 41.667 3.78 0.00 45.31 2.32
4031 5819 5.465532 TGTGCAAAATGCTTCCTATTTGA 57.534 34.783 3.78 0.00 45.31 2.69
4034 5822 4.022416 TGCAAAATGCTTCCTATTTGACGT 60.022 37.500 3.78 0.00 45.31 4.34
4035 5823 4.324402 GCAAAATGCTTCCTATTTGACGTG 59.676 41.667 0.00 0.00 40.96 4.49
4036 5824 5.460646 CAAAATGCTTCCTATTTGACGTGT 58.539 37.500 0.00 0.00 35.34 4.49
4037 5825 5.705609 AAATGCTTCCTATTTGACGTGTT 57.294 34.783 0.00 0.00 0.00 3.32
4038 5826 6.811253 AAATGCTTCCTATTTGACGTGTTA 57.189 33.333 0.00 0.00 0.00 2.41
4039 5827 7.391148 AAATGCTTCCTATTTGACGTGTTAT 57.609 32.000 0.00 0.00 0.00 1.89
4040 5828 8.500753 AAATGCTTCCTATTTGACGTGTTATA 57.499 30.769 0.00 0.00 0.00 0.98
4041 5829 8.677148 AATGCTTCCTATTTGACGTGTTATAT 57.323 30.769 0.00 0.00 0.00 0.86
4042 5830 7.709269 TGCTTCCTATTTGACGTGTTATATC 57.291 36.000 0.00 0.00 0.00 1.63
4043 5831 7.497595 TGCTTCCTATTTGACGTGTTATATCT 58.502 34.615 0.00 0.00 0.00 1.98
4044 5832 7.985184 TGCTTCCTATTTGACGTGTTATATCTT 59.015 33.333 0.00 0.00 0.00 2.40
4045 5833 8.827677 GCTTCCTATTTGACGTGTTATATCTTT 58.172 33.333 0.00 0.00 0.00 2.52
4047 5835 9.661563 TTCCTATTTGACGTGTTATATCTTTGT 57.338 29.630 0.00 0.00 0.00 2.83
4053 5841 7.688478 TGACGTGTTATATCTTTGTATTCCG 57.312 36.000 0.00 0.00 0.00 4.30
4054 5842 7.482474 TGACGTGTTATATCTTTGTATTCCGA 58.518 34.615 0.00 0.00 0.00 4.55
4055 5843 8.139350 TGACGTGTTATATCTTTGTATTCCGAT 58.861 33.333 0.00 0.00 0.00 4.18
4056 5844 8.294341 ACGTGTTATATCTTTGTATTCCGATG 57.706 34.615 0.00 0.00 0.00 3.84
4057 5845 8.139350 ACGTGTTATATCTTTGTATTCCGATGA 58.861 33.333 0.00 0.00 0.00 2.92
4058 5846 9.140286 CGTGTTATATCTTTGTATTCCGATGAT 57.860 33.333 0.00 0.00 0.00 2.45
4120 5923 9.935682 AAATTGATGCACTATACGTCAAATAAG 57.064 29.630 0.00 0.00 44.00 1.73
4121 5924 6.525121 TGATGCACTATACGTCAAATAAGC 57.475 37.500 0.00 0.00 30.26 3.09
4122 5925 6.045955 TGATGCACTATACGTCAAATAAGCA 58.954 36.000 0.00 0.00 30.26 3.91
4123 5926 6.536941 TGATGCACTATACGTCAAATAAGCAA 59.463 34.615 0.00 0.00 30.26 3.91
4131 5934 2.159448 CGTCAAATAAGCAATCCCGCAA 60.159 45.455 0.00 0.00 0.00 4.85
4139 5942 2.044946 AATCCCGCAAGTCCTGGC 60.045 61.111 0.00 0.00 0.00 4.85
4143 5946 2.046023 CCGCAAGTCCTGGCATGA 60.046 61.111 0.00 0.00 0.00 3.07
4153 5956 1.180456 CCTGGCATGACAAAGCACCA 61.180 55.000 1.11 0.00 0.00 4.17
4154 5957 0.038892 CTGGCATGACAAAGCACCAC 60.039 55.000 1.11 0.00 0.00 4.16
4155 5958 0.754587 TGGCATGACAAAGCACCACA 60.755 50.000 0.00 0.00 0.00 4.17
4157 5960 1.818060 GGCATGACAAAGCACCACATA 59.182 47.619 0.00 0.00 0.00 2.29
4158 5961 2.415893 GGCATGACAAAGCACCACATAC 60.416 50.000 0.00 0.00 0.00 2.39
4159 5962 2.228582 GCATGACAAAGCACCACATACA 59.771 45.455 0.00 0.00 0.00 2.29
4205 6008 0.541863 ACCTCGATTGGGTGGACATC 59.458 55.000 0.00 0.00 35.51 3.06
4207 6010 0.175760 CTCGATTGGGTGGACATCGT 59.824 55.000 0.00 0.00 36.31 3.73
4209 6012 0.726827 CGATTGGGTGGACATCGTTG 59.273 55.000 0.00 0.00 0.00 4.10
4213 6016 2.332654 GGGTGGACATCGTTGTGCC 61.333 63.158 14.52 10.69 43.03 5.01
4217 6020 2.690778 GGACATCGTTGTGCCCTGC 61.691 63.158 3.34 0.00 38.18 4.85
4219 6022 3.443045 CATCGTTGTGCCCTGCCC 61.443 66.667 0.00 0.00 0.00 5.36
4221 6024 3.286694 ATCGTTGTGCCCTGCCCAT 62.287 57.895 0.00 0.00 0.00 4.00
4222 6025 3.751246 CGTTGTGCCCTGCCCATG 61.751 66.667 0.00 0.00 0.00 3.66
4223 6026 3.384532 GTTGTGCCCTGCCCATGG 61.385 66.667 4.14 4.14 0.00 3.66
4224 6027 3.913445 TTGTGCCCTGCCCATGGT 61.913 61.111 11.73 0.00 0.00 3.55
4225 6028 3.465218 TTGTGCCCTGCCCATGGTT 62.465 57.895 11.73 0.00 0.00 3.67
4226 6029 3.384532 GTGCCCTGCCCATGGTTG 61.385 66.667 11.73 0.00 0.00 3.77
4227 6030 3.588511 TGCCCTGCCCATGGTTGA 61.589 61.111 11.73 0.00 0.00 3.18
4228 6031 2.757099 GCCCTGCCCATGGTTGAG 60.757 66.667 11.73 2.96 0.00 3.02
4229 6032 2.043652 CCCTGCCCATGGTTGAGG 60.044 66.667 11.73 12.01 0.00 3.86
4230 6033 2.765969 CCTGCCCATGGTTGAGGT 59.234 61.111 11.73 0.00 0.00 3.85
4231 6034 1.570857 CCCTGCCCATGGTTGAGGTA 61.571 60.000 11.73 0.00 0.00 3.08
4232 6035 0.331278 CCTGCCCATGGTTGAGGTAA 59.669 55.000 11.73 0.00 0.00 2.85
4233 6036 1.063717 CCTGCCCATGGTTGAGGTAAT 60.064 52.381 11.73 0.00 0.00 1.89
4234 6037 2.624029 CCTGCCCATGGTTGAGGTAATT 60.624 50.000 11.73 0.00 0.00 1.40
4235 6038 3.099141 CTGCCCATGGTTGAGGTAATTT 58.901 45.455 11.73 0.00 0.00 1.82
4236 6039 3.096092 TGCCCATGGTTGAGGTAATTTC 58.904 45.455 11.73 0.00 0.00 2.17
4237 6040 3.245586 TGCCCATGGTTGAGGTAATTTCT 60.246 43.478 11.73 0.00 0.00 2.52
4238 6041 4.017958 TGCCCATGGTTGAGGTAATTTCTA 60.018 41.667 11.73 0.00 0.00 2.10
4239 6042 4.580580 GCCCATGGTTGAGGTAATTTCTAG 59.419 45.833 11.73 0.00 0.00 2.43
4240 6043 4.580580 CCCATGGTTGAGGTAATTTCTAGC 59.419 45.833 11.73 0.00 0.00 3.42
4241 6044 4.273480 CCATGGTTGAGGTAATTTCTAGCG 59.727 45.833 2.57 0.00 0.00 4.26
4270 6073 6.226787 ACACATCTTATATGAGCTACAAGGC 58.773 40.000 0.00 0.00 0.00 4.35
4274 6077 2.938956 ATATGAGCTACAAGGCCCAC 57.061 50.000 0.00 0.00 0.00 4.61
4283 6086 2.514458 ACAAGGCCCACTCCAATTAG 57.486 50.000 0.00 0.00 0.00 1.73
4290 6093 3.056821 GGCCCACTCCAATTAGTCAAAAC 60.057 47.826 0.00 0.00 0.00 2.43
4304 6107 5.593679 AGTCAAAACTAATAGGCTAGCGA 57.406 39.130 9.00 0.00 32.59 4.93
4319 6122 4.686554 GGCTAGCGACATTCCATAGTTTAG 59.313 45.833 9.00 0.00 0.00 1.85
4362 6165 2.403252 CCCCCAGTAGTGTGTGATTC 57.597 55.000 0.00 0.00 0.00 2.52
4363 6166 1.065418 CCCCCAGTAGTGTGTGATTCC 60.065 57.143 0.00 0.00 0.00 3.01
4364 6167 1.909302 CCCCAGTAGTGTGTGATTCCT 59.091 52.381 0.00 0.00 0.00 3.36
4365 6168 3.104512 CCCCAGTAGTGTGTGATTCCTA 58.895 50.000 0.00 0.00 0.00 2.94
4366 6169 3.711704 CCCCAGTAGTGTGTGATTCCTAT 59.288 47.826 0.00 0.00 0.00 2.57
4367 6170 4.164221 CCCCAGTAGTGTGTGATTCCTATT 59.836 45.833 0.00 0.00 0.00 1.73
4368 6171 5.360591 CCCAGTAGTGTGTGATTCCTATTC 58.639 45.833 0.00 0.00 0.00 1.75
4369 6172 5.043903 CCAGTAGTGTGTGATTCCTATTCG 58.956 45.833 0.00 0.00 0.00 3.34
4370 6173 5.394224 CCAGTAGTGTGTGATTCCTATTCGT 60.394 44.000 0.00 0.00 0.00 3.85
4371 6174 5.744345 CAGTAGTGTGTGATTCCTATTCGTC 59.256 44.000 0.00 0.00 0.00 4.20
4372 6175 4.801330 AGTGTGTGATTCCTATTCGTCA 57.199 40.909 0.00 0.00 0.00 4.35
4373 6176 4.495422 AGTGTGTGATTCCTATTCGTCAC 58.505 43.478 0.00 0.00 40.93 3.67
4374 6177 3.617263 GTGTGTGATTCCTATTCGTCACC 59.383 47.826 0.00 0.00 40.07 4.02
4375 6178 3.259625 TGTGTGATTCCTATTCGTCACCA 59.740 43.478 0.00 0.00 40.07 4.17
4376 6179 4.250464 GTGTGATTCCTATTCGTCACCAA 58.750 43.478 0.00 0.00 40.07 3.67
4383 6546 3.056107 TCCTATTCGTCACCAACAAGGAG 60.056 47.826 0.00 0.00 41.22 3.69
4399 6562 7.114811 CCAACAAGGAGAAATTACAACAAATCG 59.885 37.037 0.00 0.00 41.22 3.34
4406 6569 7.381139 GGAGAAATTACAACAAATCGCAGAAAA 59.619 33.333 0.00 0.00 43.58 2.29
4433 6596 0.682852 ACTTTACCTGCGCCACTACA 59.317 50.000 4.18 0.00 0.00 2.74
4440 6603 1.291877 CTGCGCCACTACAACTGACC 61.292 60.000 4.18 0.00 0.00 4.02
4441 6604 1.301401 GCGCCACTACAACTGACCA 60.301 57.895 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.064558 TCAACGGTAGTCCAATAGCAAAAA 58.935 37.500 0.00 0.00 0.00 1.94
25 26 4.643463 TCAACGGTAGTCCAATAGCAAAA 58.357 39.130 0.00 0.00 0.00 2.44
26 27 4.274602 TCAACGGTAGTCCAATAGCAAA 57.725 40.909 0.00 0.00 0.00 3.68
28 29 3.512329 TCTTCAACGGTAGTCCAATAGCA 59.488 43.478 0.00 0.00 0.00 3.49
29 30 4.113354 CTCTTCAACGGTAGTCCAATAGC 58.887 47.826 0.00 0.00 0.00 2.97
30 31 4.441634 CCCTCTTCAACGGTAGTCCAATAG 60.442 50.000 0.00 0.00 0.00 1.73
31 32 3.449737 CCCTCTTCAACGGTAGTCCAATA 59.550 47.826 0.00 0.00 0.00 1.90
32 33 2.236395 CCCTCTTCAACGGTAGTCCAAT 59.764 50.000 0.00 0.00 0.00 3.16
33 34 1.621814 CCCTCTTCAACGGTAGTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
34 35 1.263356 CCCTCTTCAACGGTAGTCCA 58.737 55.000 0.00 0.00 0.00 4.02
36 37 3.397849 AAACCCTCTTCAACGGTAGTC 57.602 47.619 0.00 0.00 0.00 2.59
37 38 3.851458 AAAACCCTCTTCAACGGTAGT 57.149 42.857 0.00 0.00 0.00 2.73
38 39 5.407691 GTCTAAAAACCCTCTTCAACGGTAG 59.592 44.000 0.00 0.00 0.00 3.18
39 40 5.299949 GTCTAAAAACCCTCTTCAACGGTA 58.700 41.667 0.00 0.00 0.00 4.02
40 41 4.132336 GTCTAAAAACCCTCTTCAACGGT 58.868 43.478 0.00 0.00 0.00 4.83
45 46 4.240323 AGGAGGTCTAAAAACCCTCTTCA 58.760 43.478 5.03 0.00 43.54 3.02
47 48 5.339282 GCATAGGAGGTCTAAAAACCCTCTT 60.339 44.000 5.03 0.31 43.54 2.85
48 49 4.164413 GCATAGGAGGTCTAAAAACCCTCT 59.836 45.833 5.03 0.00 43.54 3.69
50 51 3.202373 GGCATAGGAGGTCTAAAAACCCT 59.798 47.826 0.00 0.00 40.42 4.34
52 53 4.505324 AGGCATAGGAGGTCTAAAAACC 57.495 45.455 0.00 0.00 39.80 3.27
53 54 7.933215 TTTAAGGCATAGGAGGTCTAAAAAC 57.067 36.000 0.00 0.00 0.00 2.43
54 55 8.799367 GTTTTTAAGGCATAGGAGGTCTAAAAA 58.201 33.333 0.00 0.00 0.00 1.94
55 56 7.120138 CGTTTTTAAGGCATAGGAGGTCTAAAA 59.880 37.037 0.00 0.00 0.00 1.52
56 57 6.596497 CGTTTTTAAGGCATAGGAGGTCTAAA 59.404 38.462 0.00 0.00 0.00 1.85
57 58 6.110707 CGTTTTTAAGGCATAGGAGGTCTAA 58.889 40.000 0.00 0.00 0.00 2.10
58 59 5.395990 CCGTTTTTAAGGCATAGGAGGTCTA 60.396 44.000 0.00 0.00 0.00 2.59
59 60 4.514401 CGTTTTTAAGGCATAGGAGGTCT 58.486 43.478 0.00 0.00 0.00 3.85
60 61 3.626217 CCGTTTTTAAGGCATAGGAGGTC 59.374 47.826 0.00 0.00 0.00 3.85
61 62 3.009805 ACCGTTTTTAAGGCATAGGAGGT 59.990 43.478 0.00 0.00 0.00 3.85
62 63 3.617284 ACCGTTTTTAAGGCATAGGAGG 58.383 45.455 0.00 0.00 0.00 4.30
63 64 5.820947 ACATACCGTTTTTAAGGCATAGGAG 59.179 40.000 0.00 0.00 0.00 3.69
66 67 5.270853 GCACATACCGTTTTTAAGGCATAG 58.729 41.667 0.00 0.00 0.00 2.23
67 68 4.096682 GGCACATACCGTTTTTAAGGCATA 59.903 41.667 0.00 0.00 0.00 3.14
68 69 3.119280 GGCACATACCGTTTTTAAGGCAT 60.119 43.478 0.00 0.00 0.00 4.40
71 72 3.086282 AGGGCACATACCGTTTTTAAGG 58.914 45.455 0.00 0.00 0.00 2.69
74 75 9.796180 ATAATATTAGGGCACATACCGTTTTTA 57.204 29.630 1.02 0.00 0.00 1.52
75 76 8.700439 ATAATATTAGGGCACATACCGTTTTT 57.300 30.769 1.02 0.00 0.00 1.94
76 77 9.223099 GTATAATATTAGGGCACATACCGTTTT 57.777 33.333 1.02 0.00 0.00 2.43
77 78 8.599792 AGTATAATATTAGGGCACATACCGTTT 58.400 33.333 1.02 0.00 0.00 3.60
78 79 8.142485 AGTATAATATTAGGGCACATACCGTT 57.858 34.615 1.02 0.00 0.00 4.44
79 80 7.729124 AGTATAATATTAGGGCACATACCGT 57.271 36.000 1.02 0.00 0.00 4.83
82 83 7.282450 GGCCAAGTATAATATTAGGGCACATAC 59.718 40.741 15.40 6.73 41.84 2.39
83 84 7.037225 TGGCCAAGTATAATATTAGGGCACATA 60.037 37.037 17.79 2.07 43.96 2.29
84 85 6.187682 GGCCAAGTATAATATTAGGGCACAT 58.812 40.000 15.40 0.00 41.84 3.21
85 86 5.073827 TGGCCAAGTATAATATTAGGGCACA 59.926 40.000 17.79 13.00 43.96 4.57
86 87 5.566469 TGGCCAAGTATAATATTAGGGCAC 58.434 41.667 17.79 11.39 43.96 5.01
87 88 5.851808 TGGCCAAGTATAATATTAGGGCA 57.148 39.130 17.79 17.79 46.16 5.36
88 89 8.440771 AGATATGGCCAAGTATAATATTAGGGC 58.559 37.037 10.96 14.09 40.27 5.19
90 91 9.698309 CGAGATATGGCCAAGTATAATATTAGG 57.302 37.037 10.96 0.00 0.00 2.69
91 92 9.698309 CCGAGATATGGCCAAGTATAATATTAG 57.302 37.037 10.96 0.00 0.00 1.73
92 93 8.647796 CCCGAGATATGGCCAAGTATAATATTA 58.352 37.037 10.96 0.00 0.00 0.98
94 95 6.464465 GCCCGAGATATGGCCAAGTATAATAT 60.464 42.308 10.96 0.00 41.97 1.28
95 96 5.163343 GCCCGAGATATGGCCAAGTATAATA 60.163 44.000 10.96 0.00 41.97 0.98
96 97 4.384208 GCCCGAGATATGGCCAAGTATAAT 60.384 45.833 10.96 0.00 41.97 1.28
99 100 1.279271 GCCCGAGATATGGCCAAGTAT 59.721 52.381 10.96 3.44 41.97 2.12
100 101 0.685097 GCCCGAGATATGGCCAAGTA 59.315 55.000 10.96 0.00 41.97 2.24
101 102 1.451936 GCCCGAGATATGGCCAAGT 59.548 57.895 10.96 0.00 41.97 3.16
107 108 4.394712 GCCCGGCCCGAGATATGG 62.395 72.222 3.71 0.00 0.00 2.74
139 140 2.203422 TGGGTTTTCAGCACCGGG 60.203 61.111 6.32 0.00 34.79 5.73
140 141 2.268076 CCTGGGTTTTCAGCACCGG 61.268 63.158 0.00 0.00 34.79 5.28
141 142 2.919494 GCCTGGGTTTTCAGCACCG 61.919 63.158 0.00 0.00 34.79 4.94
142 143 2.574018 GGCCTGGGTTTTCAGCACC 61.574 63.158 0.00 0.00 33.64 5.01
143 144 2.574018 GGGCCTGGGTTTTCAGCAC 61.574 63.158 0.84 0.00 33.64 4.40
146 147 1.675641 CTCGGGCCTGGGTTTTCAG 60.676 63.158 12.87 0.00 34.70 3.02
148 149 3.062466 GCTCGGGCCTGGGTTTTC 61.062 66.667 14.54 0.00 0.00 2.29
162 163 4.785453 CAGGTTCAGGCCGGGCTC 62.785 72.222 30.43 17.48 0.00 4.70
165 166 2.706952 TTTTCCAGGTTCAGGCCGGG 62.707 60.000 2.18 0.00 43.88 5.73
166 167 1.228429 TTTTCCAGGTTCAGGCCGG 60.228 57.895 0.00 0.00 0.00 6.13
167 168 1.866853 GCTTTTCCAGGTTCAGGCCG 61.867 60.000 0.00 0.00 0.00 6.13
168 169 1.536073 GGCTTTTCCAGGTTCAGGCC 61.536 60.000 0.00 0.00 34.01 5.19
172 173 0.536460 GTCGGGCTTTTCCAGGTTCA 60.536 55.000 0.00 0.00 36.21 3.18
173 174 0.536460 TGTCGGGCTTTTCCAGGTTC 60.536 55.000 0.00 0.00 36.21 3.62
174 175 0.822121 GTGTCGGGCTTTTCCAGGTT 60.822 55.000 0.00 0.00 36.21 3.50
176 177 2.325082 CGTGTCGGGCTTTTCCAGG 61.325 63.158 0.00 0.00 36.21 4.45
177 178 2.325082 CCGTGTCGGGCTTTTCCAG 61.325 63.158 0.00 0.00 44.15 3.86
178 179 2.281208 CCGTGTCGGGCTTTTCCA 60.281 61.111 0.00 0.00 44.15 3.53
205 206 7.567821 AAAATGGATTTTTAGCCGTGGTCGG 62.568 44.000 2.09 2.09 46.57 4.79
208 209 4.282195 TGAAAATGGATTTTTAGCCGTGGT 59.718 37.500 0.00 0.00 39.86 4.16
210 211 5.226396 TGTGAAAATGGATTTTTAGCCGTG 58.774 37.500 0.00 0.00 39.86 4.94
211 212 5.461032 TGTGAAAATGGATTTTTAGCCGT 57.539 34.783 0.00 0.00 39.86 5.68
213 214 4.631377 GCCTGTGAAAATGGATTTTTAGCC 59.369 41.667 0.00 0.00 39.86 3.93
215 216 5.178061 GGGCCTGTGAAAATGGATTTTTAG 58.822 41.667 0.84 0.26 39.86 1.85
216 217 4.322349 CGGGCCTGTGAAAATGGATTTTTA 60.322 41.667 2.29 0.00 39.86 1.52
217 218 3.556843 CGGGCCTGTGAAAATGGATTTTT 60.557 43.478 2.29 0.00 39.86 1.94
218 219 2.028203 CGGGCCTGTGAAAATGGATTTT 60.028 45.455 2.29 0.00 42.24 1.82
222 223 0.322456 CTCGGGCCTGTGAAAATGGA 60.322 55.000 12.43 0.00 0.00 3.41
223 224 1.937546 GCTCGGGCCTGTGAAAATGG 61.938 60.000 17.90 0.00 0.00 3.16
225 226 4.002797 GCTCGGGCCTGTGAAAAT 57.997 55.556 17.90 0.00 0.00 1.82
258 259 1.135315 CTGCAAATCAAGCCCGACG 59.865 57.895 0.00 0.00 0.00 5.12
261 262 2.182537 GCCTGCAAATCAAGCCCG 59.817 61.111 0.00 0.00 0.00 6.13
262 263 2.580815 GGCCTGCAAATCAAGCCC 59.419 61.111 0.00 0.00 44.74 5.19
264 265 0.035176 TTTGGGCCTGCAAATCAAGC 59.965 50.000 4.53 0.00 0.00 4.01
265 266 1.608801 GGTTTGGGCCTGCAAATCAAG 60.609 52.381 11.59 0.00 0.00 3.02
266 267 0.396060 GGTTTGGGCCTGCAAATCAA 59.604 50.000 11.59 0.00 0.00 2.57
269 270 2.582493 CGGGTTTGGGCCTGCAAAT 61.582 57.895 4.53 0.00 0.00 2.32
291 292 0.813610 TAAGCCCGAACATGCCATCG 60.814 55.000 8.66 8.66 38.74 3.84
293 294 1.103398 GCTAAGCCCGAACATGCCAT 61.103 55.000 0.00 0.00 0.00 4.40
294 295 1.748879 GCTAAGCCCGAACATGCCA 60.749 57.895 0.00 0.00 0.00 4.92
295 296 2.481471 GGCTAAGCCCGAACATGCC 61.481 63.158 0.00 0.00 44.06 4.40
310 311 3.662117 GAAAATCCCGGGCCTGGCT 62.662 63.158 26.87 11.85 0.00 4.75
311 312 3.147595 GAAAATCCCGGGCCTGGC 61.148 66.667 26.87 11.05 0.00 4.85
313 314 2.828549 CCGAAAATCCCGGGCCTG 60.829 66.667 18.49 3.88 43.05 4.85
318 319 2.828549 CCAGCCCGAAAATCCCGG 60.829 66.667 0.00 0.00 46.10 5.73
320 321 1.753078 GACCCAGCCCGAAAATCCC 60.753 63.158 0.00 0.00 0.00 3.85
321 322 2.112815 CGACCCAGCCCGAAAATCC 61.113 63.158 0.00 0.00 0.00 3.01
322 323 2.112815 CCGACCCAGCCCGAAAATC 61.113 63.158 0.00 0.00 0.00 2.17
323 324 2.045340 CCGACCCAGCCCGAAAAT 60.045 61.111 0.00 0.00 0.00 1.82
365 366 2.683933 AGGTAGACCTGGCCACGG 60.684 66.667 16.92 16.92 46.55 4.94
374 375 5.941555 AGCAGCCATATAATAGGTAGACC 57.058 43.478 0.00 0.00 0.00 3.85
375 376 7.928706 CCAATAGCAGCCATATAATAGGTAGAC 59.071 40.741 0.00 0.00 0.00 2.59
376 377 7.844269 TCCAATAGCAGCCATATAATAGGTAGA 59.156 37.037 0.00 0.00 0.00 2.59
377 378 8.023021 TCCAATAGCAGCCATATAATAGGTAG 57.977 38.462 0.00 0.00 0.00 3.18
378 379 7.844269 TCTCCAATAGCAGCCATATAATAGGTA 59.156 37.037 0.00 0.00 0.00 3.08
380 381 7.129457 TCTCCAATAGCAGCCATATAATAGG 57.871 40.000 0.00 0.00 0.00 2.57
381 382 7.172875 GCATCTCCAATAGCAGCCATATAATAG 59.827 40.741 0.00 0.00 0.00 1.73
382 383 6.994496 GCATCTCCAATAGCAGCCATATAATA 59.006 38.462 0.00 0.00 0.00 0.98
385 386 4.472470 AGCATCTCCAATAGCAGCCATATA 59.528 41.667 0.00 0.00 0.00 0.86
387 388 2.641321 AGCATCTCCAATAGCAGCCATA 59.359 45.455 0.00 0.00 0.00 2.74
388 389 1.424302 AGCATCTCCAATAGCAGCCAT 59.576 47.619 0.00 0.00 0.00 4.40
389 390 0.841961 AGCATCTCCAATAGCAGCCA 59.158 50.000 0.00 0.00 0.00 4.75
390 391 1.521580 GAGCATCTCCAATAGCAGCC 58.478 55.000 0.00 0.00 0.00 4.85
403 404 1.141019 TGTCGCCCGTTAGAGCATC 59.859 57.895 0.00 0.00 0.00 3.91
404 405 1.153628 GTGTCGCCCGTTAGAGCAT 60.154 57.895 0.00 0.00 0.00 3.79
405 406 2.260434 GTGTCGCCCGTTAGAGCA 59.740 61.111 0.00 0.00 0.00 4.26
406 407 2.092882 GTGTGTCGCCCGTTAGAGC 61.093 63.158 0.00 0.00 0.00 4.09
407 408 0.038526 AAGTGTGTCGCCCGTTAGAG 60.039 55.000 0.00 0.00 0.00 2.43
409 410 0.599204 ACAAGTGTGTCGCCCGTTAG 60.599 55.000 0.00 0.00 29.49 2.34
410 411 0.876777 CACAAGTGTGTCGCCCGTTA 60.877 55.000 3.17 0.00 40.96 3.18
411 412 2.177580 CACAAGTGTGTCGCCCGTT 61.178 57.895 3.17 0.00 40.96 4.44
418 419 5.858590 ACACAGGGTAGCACAAGTGTGTC 62.859 52.174 12.76 5.69 43.82 3.67
420 421 3.634502 CACACAGGGTAGCACAAGTGTG 61.635 54.545 17.55 17.55 46.97 3.82
421 422 0.837272 ACACAGGGTAGCACAAGTGT 59.163 50.000 1.79 0.00 35.58 3.55
422 423 1.229428 CACACAGGGTAGCACAAGTG 58.771 55.000 0.00 0.00 0.00 3.16
424 425 1.202639 TGACACACAGGGTAGCACAAG 60.203 52.381 0.00 0.00 0.00 3.16
425 426 0.833949 TGACACACAGGGTAGCACAA 59.166 50.000 0.00 0.00 0.00 3.33
426 427 0.105964 GTGACACACAGGGTAGCACA 59.894 55.000 0.00 0.00 34.59 4.57
427 428 0.944311 CGTGACACACAGGGTAGCAC 60.944 60.000 6.37 0.00 33.40 4.40
428 429 1.365999 CGTGACACACAGGGTAGCA 59.634 57.895 6.37 0.00 33.40 3.49
429 430 0.666577 GACGTGACACACAGGGTAGC 60.667 60.000 6.37 0.00 38.51 3.58
430 431 0.386858 CGACGTGACACACAGGGTAG 60.387 60.000 6.37 0.00 38.51 3.18
431 432 1.655885 CGACGTGACACACAGGGTA 59.344 57.895 6.37 0.00 38.51 3.69
432 433 2.415843 CGACGTGACACACAGGGT 59.584 61.111 6.37 0.00 38.51 4.34
433 434 3.036084 GCGACGTGACACACAGGG 61.036 66.667 6.37 0.00 38.51 4.45
434 435 2.027605 AGCGACGTGACACACAGG 59.972 61.111 6.37 0.00 39.84 4.00
435 436 0.664466 ATCAGCGACGTGACACACAG 60.664 55.000 6.37 0.00 33.40 3.66
436 437 0.249280 AATCAGCGACGTGACACACA 60.249 50.000 6.37 0.00 33.40 3.72
437 438 0.161658 CAATCAGCGACGTGACACAC 59.838 55.000 6.37 0.00 0.00 3.82
438 439 0.249280 ACAATCAGCGACGTGACACA 60.249 50.000 6.37 0.00 0.00 3.72
439 440 0.435008 GACAATCAGCGACGTGACAC 59.565 55.000 0.00 0.00 0.00 3.67
440 441 0.313987 AGACAATCAGCGACGTGACA 59.686 50.000 0.00 0.00 0.00 3.58
443 444 3.423123 GGTTTAAGACAATCAGCGACGTG 60.423 47.826 0.00 0.00 0.00 4.49
445 446 2.993899 AGGTTTAAGACAATCAGCGACG 59.006 45.455 0.00 0.00 0.00 5.12
446 447 3.746492 ACAGGTTTAAGACAATCAGCGAC 59.254 43.478 0.00 0.00 0.00 5.19
447 448 4.002906 ACAGGTTTAAGACAATCAGCGA 57.997 40.909 0.00 0.00 0.00 4.93
448 449 4.749245 AACAGGTTTAAGACAATCAGCG 57.251 40.909 0.00 0.00 0.00 5.18
450 451 6.348213 CCGGTAAACAGGTTTAAGACAATCAG 60.348 42.308 6.21 0.00 36.86 2.90
451 452 5.470777 CCGGTAAACAGGTTTAAGACAATCA 59.529 40.000 6.21 0.00 36.86 2.57
452 453 5.471116 ACCGGTAAACAGGTTTAAGACAATC 59.529 40.000 4.49 0.00 41.69 2.67
453 454 5.379187 ACCGGTAAACAGGTTTAAGACAAT 58.621 37.500 4.49 0.00 41.69 2.71
455 456 4.420522 ACCGGTAAACAGGTTTAAGACA 57.579 40.909 4.49 0.00 41.69 3.41
464 465 4.036971 TGATGAAACAAACCGGTAAACAGG 59.963 41.667 8.00 0.00 37.23 4.00
465 466 5.176407 TGATGAAACAAACCGGTAAACAG 57.824 39.130 8.00 0.00 0.00 3.16
466 467 5.578005 TTGATGAAACAAACCGGTAAACA 57.422 34.783 8.00 3.30 0.00 2.83
467 468 6.697892 TCATTTGATGAAACAAACCGGTAAAC 59.302 34.615 8.00 0.00 41.49 2.01
469 470 6.392625 TCATTTGATGAAACAAACCGGTAA 57.607 33.333 8.00 0.00 41.49 2.85
471 472 4.927978 TCATTTGATGAAACAAACCGGT 57.072 36.364 0.00 0.00 41.49 5.28
481 482 6.339730 CCCCGATTTCATTTCATTTGATGAA 58.660 36.000 0.00 0.00 46.77 2.57
482 483 5.681954 GCCCCGATTTCATTTCATTTGATGA 60.682 40.000 0.00 0.00 37.55 2.92
483 484 4.508861 GCCCCGATTTCATTTCATTTGATG 59.491 41.667 0.00 0.00 0.00 3.07
484 485 4.161942 TGCCCCGATTTCATTTCATTTGAT 59.838 37.500 0.00 0.00 0.00 2.57
486 487 3.618150 GTGCCCCGATTTCATTTCATTTG 59.382 43.478 0.00 0.00 0.00 2.32
487 488 3.675775 CGTGCCCCGATTTCATTTCATTT 60.676 43.478 0.00 0.00 39.56 2.32
488 489 2.159254 CGTGCCCCGATTTCATTTCATT 60.159 45.455 0.00 0.00 39.56 2.57
489 490 1.405105 CGTGCCCCGATTTCATTTCAT 59.595 47.619 0.00 0.00 39.56 2.57
490 491 0.808125 CGTGCCCCGATTTCATTTCA 59.192 50.000 0.00 0.00 39.56 2.69
491 492 0.525455 GCGTGCCCCGATTTCATTTC 60.525 55.000 0.00 0.00 39.56 2.17
492 493 1.510844 GCGTGCCCCGATTTCATTT 59.489 52.632 0.00 0.00 39.56 2.32
494 495 2.828549 GGCGTGCCCCGATTTCAT 60.829 61.111 0.00 0.00 39.56 2.57
534 1782 0.827368 GTCCTTCATCGGAGGAGCTT 59.173 55.000 0.00 0.00 32.70 3.74
535 1783 1.388065 CGTCCTTCATCGGAGGAGCT 61.388 60.000 0.00 0.00 40.50 4.09
536 1784 1.066587 CGTCCTTCATCGGAGGAGC 59.933 63.158 0.00 0.00 40.50 4.70
802 2089 1.774639 TTAGGAAACGTGACGTGCTC 58.225 50.000 12.85 11.63 39.99 4.26
803 2090 2.334838 GATTAGGAAACGTGACGTGCT 58.665 47.619 12.85 2.69 39.99 4.40
804 2091 1.392510 GGATTAGGAAACGTGACGTGC 59.607 52.381 12.85 7.07 39.99 5.34
805 2092 2.921754 GAGGATTAGGAAACGTGACGTG 59.078 50.000 12.85 0.00 39.99 4.49
806 2093 2.415090 CGAGGATTAGGAAACGTGACGT 60.415 50.000 4.10 4.10 43.97 4.34
917 2205 2.971307 CAGAGAAAGACTTCCCTGCTC 58.029 52.381 0.00 0.00 31.54 4.26
920 2208 2.038295 ACAGCAGAGAAAGACTTCCCTG 59.962 50.000 0.00 0.00 39.69 4.45
921 2209 2.301583 GACAGCAGAGAAAGACTTCCCT 59.698 50.000 0.00 0.00 31.28 4.20
924 2212 2.614229 GGGGACAGCAGAGAAAGACTTC 60.614 54.545 0.00 0.00 0.00 3.01
925 2213 1.349357 GGGGACAGCAGAGAAAGACTT 59.651 52.381 0.00 0.00 0.00 3.01
926 2214 0.980423 GGGGACAGCAGAGAAAGACT 59.020 55.000 0.00 0.00 0.00 3.24
927 2215 0.390472 CGGGGACAGCAGAGAAAGAC 60.390 60.000 0.00 0.00 0.00 3.01
928 2216 1.544825 CCGGGGACAGCAGAGAAAGA 61.545 60.000 0.00 0.00 0.00 2.52
954 2242 2.283173 CCAAAGACCAGGCACCCC 60.283 66.667 0.00 0.00 0.00 4.95
956 2244 0.755327 ACAACCAAAGACCAGGCACC 60.755 55.000 0.00 0.00 0.00 5.01
959 2247 1.109323 AGCACAACCAAAGACCAGGC 61.109 55.000 0.00 0.00 0.00 4.85
960 2248 2.154462 CTAGCACAACCAAAGACCAGG 58.846 52.381 0.00 0.00 0.00 4.45
984 2274 1.957877 GGCATCTAGGCTCTAACGAGT 59.042 52.381 0.00 0.00 39.53 4.18
989 2279 1.806461 CGGCGGCATCTAGGCTCTAA 61.806 60.000 10.53 0.00 41.46 2.10
1107 2401 3.916392 GAGCGTCCACTGGTCACCG 62.916 68.421 0.00 0.00 34.12 4.94
1110 2404 1.112916 TGAAGAGCGTCCACTGGTCA 61.113 55.000 0.00 0.00 36.34 4.02
1226 2520 0.474660 ACAAGGAGGAGGAGGTTGCT 60.475 55.000 0.00 0.00 0.00 3.91
1227 2521 0.402121 AACAAGGAGGAGGAGGTTGC 59.598 55.000 0.00 0.00 0.00 4.17
1229 2523 0.402121 GCAACAAGGAGGAGGAGGTT 59.598 55.000 0.00 0.00 0.00 3.50
1230 2524 0.474660 AGCAACAAGGAGGAGGAGGT 60.475 55.000 0.00 0.00 0.00 3.85
1231 2525 0.251634 GAGCAACAAGGAGGAGGAGG 59.748 60.000 0.00 0.00 0.00 4.30
1233 2527 1.270907 GAGAGCAACAAGGAGGAGGA 58.729 55.000 0.00 0.00 0.00 3.71
1234 2528 0.251634 GGAGAGCAACAAGGAGGAGG 59.748 60.000 0.00 0.00 0.00 4.30
1235 2529 0.251634 GGGAGAGCAACAAGGAGGAG 59.748 60.000 0.00 0.00 0.00 3.69
1238 2532 1.301293 GGGGGAGAGCAACAAGGAG 59.699 63.158 0.00 0.00 0.00 3.69
1241 2535 2.045926 CCGGGGGAGAGCAACAAG 60.046 66.667 0.00 0.00 0.00 3.16
1242 2536 4.344865 GCCGGGGGAGAGCAACAA 62.345 66.667 2.18 0.00 0.00 2.83
1255 2549 4.520846 GATTGAAGCGTGCGCCGG 62.521 66.667 17.73 0.00 43.17 6.13
1260 2554 0.166814 GTCAGTGGATTGAAGCGTGC 59.833 55.000 0.00 0.00 0.00 5.34
1261 2555 0.798776 GGTCAGTGGATTGAAGCGTG 59.201 55.000 0.00 0.00 0.00 5.34
1262 2556 0.687354 AGGTCAGTGGATTGAAGCGT 59.313 50.000 0.00 0.00 0.00 5.07
1263 2557 1.363744 GAGGTCAGTGGATTGAAGCG 58.636 55.000 0.00 0.00 0.00 4.68
1264 2558 1.338200 ACGAGGTCAGTGGATTGAAGC 60.338 52.381 0.00 0.00 0.00 3.86
1266 2560 2.367241 TCAACGAGGTCAGTGGATTGAA 59.633 45.455 0.00 0.00 0.00 2.69
1268 2562 2.455674 TCAACGAGGTCAGTGGATTG 57.544 50.000 0.00 0.00 0.00 2.67
1269 2563 2.834549 AGATCAACGAGGTCAGTGGATT 59.165 45.455 0.00 0.00 32.75 3.01
1270 2564 2.461695 AGATCAACGAGGTCAGTGGAT 58.538 47.619 0.00 0.00 35.13 3.41
1271 2565 1.924731 AGATCAACGAGGTCAGTGGA 58.075 50.000 0.00 0.00 0.00 4.02
1272 2566 2.029020 TGAAGATCAACGAGGTCAGTGG 60.029 50.000 0.00 0.00 0.00 4.00
1274 2568 2.232452 CCTGAAGATCAACGAGGTCAGT 59.768 50.000 0.00 0.00 32.41 3.41
1275 2569 2.417924 CCCTGAAGATCAACGAGGTCAG 60.418 54.545 0.00 0.00 33.77 3.51
1277 2571 1.740718 GCCCTGAAGATCAACGAGGTC 60.741 57.143 0.00 0.00 0.00 3.85
1278 2572 0.250513 GCCCTGAAGATCAACGAGGT 59.749 55.000 0.00 0.00 0.00 3.85
1280 2574 0.108615 ACGCCCTGAAGATCAACGAG 60.109 55.000 0.00 0.00 0.00 4.18
1281 2575 0.389817 CACGCCCTGAAGATCAACGA 60.390 55.000 0.00 0.00 0.00 3.85
1282 2576 0.389817 TCACGCCCTGAAGATCAACG 60.390 55.000 0.00 0.00 0.00 4.10
1283 2577 1.667724 CATCACGCCCTGAAGATCAAC 59.332 52.381 0.00 0.00 30.60 3.18
1284 2578 1.407299 CCATCACGCCCTGAAGATCAA 60.407 52.381 0.00 0.00 30.60 2.57
1285 2579 0.178767 CCATCACGCCCTGAAGATCA 59.821 55.000 0.00 0.00 30.60 2.92
1286 2580 0.465705 TCCATCACGCCCTGAAGATC 59.534 55.000 0.00 0.00 30.60 2.75
1291 2585 3.083349 CCCTCCATCACGCCCTGA 61.083 66.667 0.00 0.00 0.00 3.86
1450 2762 3.961408 AGTATGGGTAGACGAGCATCTTT 59.039 43.478 0.00 0.00 0.00 2.52
1468 2780 1.077716 GCTGCCGTTGGGGAAGTAT 60.078 57.895 0.00 0.00 44.43 2.12
1610 2953 4.355543 TTCAGCCGAAATAGCATGAAAC 57.644 40.909 0.00 0.00 30.10 2.78
1617 2960 4.419522 TGAAGTTTTCAGCCGAAATAGC 57.580 40.909 0.00 0.00 40.75 2.97
1669 3012 5.922546 TGAATTTACTGAAATCGTTCCGTG 58.077 37.500 0.00 0.00 34.01 4.94
1672 3015 6.072673 ACCACTGAATTTACTGAAATCGTTCC 60.073 38.462 0.00 0.00 34.01 3.62
1718 3061 7.490725 TGTTGACACGAAAATTCAATTGTCATT 59.509 29.630 16.59 2.81 39.14 2.57
1719 3062 6.977502 TGTTGACACGAAAATTCAATTGTCAT 59.022 30.769 16.59 0.00 39.14 3.06
1720 3063 6.325596 TGTTGACACGAAAATTCAATTGTCA 58.674 32.000 5.13 13.84 38.38 3.58
1732 3075 2.159448 CCAAACTGCTGTTGACACGAAA 60.159 45.455 9.95 0.00 36.39 3.46
1777 3120 4.141620 ACCTGACATCAACTCAAGACTTGT 60.142 41.667 14.75 0.00 0.00 3.16
1839 3182 4.199310 TGATAATACTTGGAACCAGCTGC 58.801 43.478 8.66 0.00 0.00 5.25
1931 3274 4.826274 TCCTAATCAAGAACTGGTCTGG 57.174 45.455 0.00 0.00 36.40 3.86
2049 3399 3.131223 TGCAGTAGACTCAAGAGGCATAC 59.869 47.826 5.61 5.30 39.50 2.39
2065 3415 5.412594 GTGTTTGAGATCCTTTCATGCAGTA 59.587 40.000 0.00 0.00 0.00 2.74
2220 3718 9.920133 TTGATTGTTATGCAGCTGTAATTTTTA 57.080 25.926 16.64 0.00 0.00 1.52
2269 3767 3.427503 CCAAAAGTTCTTTCGTGTGCTGT 60.428 43.478 0.00 0.00 0.00 4.40
2363 3862 9.840427 AATCGATTGTTAGGAAACTGTAATTTG 57.160 29.630 10.50 0.00 43.88 2.32
2372 3872 4.394920 TGCAGGAATCGATTGTTAGGAAAC 59.605 41.667 16.96 0.00 36.07 2.78
2401 3901 9.665719 TCTTCTATGCTCTGTATACTGATCTAG 57.334 37.037 12.29 12.35 0.00 2.43
2402 3902 9.665719 CTCTTCTATGCTCTGTATACTGATCTA 57.334 37.037 12.29 3.76 0.00 1.98
2455 3955 2.868583 CCCTGTCTGAAAGTATGCGATG 59.131 50.000 0.00 0.00 33.76 3.84
2461 3962 4.714308 CCTCTTCTCCCTGTCTGAAAGTAT 59.286 45.833 0.00 0.00 33.76 2.12
2616 4117 2.363683 GAGATCTTGGGGTTCAGCTTG 58.636 52.381 0.00 0.00 0.00 4.01
2682 4183 2.872038 GCCAGAGATCCTGAACGTGTTT 60.872 50.000 11.48 0.00 45.78 2.83
2727 4228 5.982890 AAACCTATTGAATGGAAGTGGTG 57.017 39.130 0.00 0.00 0.00 4.17
2784 4289 6.322712 GGGCCATATAACCACTACAAAAATCA 59.677 38.462 4.39 0.00 0.00 2.57
3019 4524 1.553704 TCAGCACATCAGAGCATGTCT 59.446 47.619 0.00 0.00 34.60 3.41
3023 4528 3.345508 TTCTTCAGCACATCAGAGCAT 57.654 42.857 0.00 0.00 33.43 3.79
3024 4529 2.845363 TTCTTCAGCACATCAGAGCA 57.155 45.000 0.00 0.00 33.43 4.26
3025 4530 3.688185 TGAATTCTTCAGCACATCAGAGC 59.312 43.478 7.05 0.00 34.08 4.09
3026 4531 5.874895 TTGAATTCTTCAGCACATCAGAG 57.125 39.130 7.05 0.00 41.38 3.35
3027 4532 6.829229 AATTGAATTCTTCAGCACATCAGA 57.171 33.333 7.05 0.00 41.38 3.27
3028 4533 8.188799 ACATAATTGAATTCTTCAGCACATCAG 58.811 33.333 7.05 0.00 41.38 2.90
3048 4584 8.408043 TCCATGTCTGAAAGTTTCAACATAAT 57.592 30.769 27.32 15.76 38.31 1.28
3049 4585 7.815840 TCCATGTCTGAAAGTTTCAACATAA 57.184 32.000 27.32 20.94 38.31 1.90
3054 4590 4.889409 AGCTTCCATGTCTGAAAGTTTCAA 59.111 37.500 18.55 5.42 39.58 2.69
3393 4929 2.609427 TCCTGGATTCATCTTCAGCG 57.391 50.000 0.00 0.00 0.00 5.18
3457 4993 7.148272 ACACCGTCTGATTTCTTACTAGAGTAC 60.148 40.741 0.00 0.00 0.00 2.73
3525 5061 2.363680 CCATCACTGCCTCCTGTACTAG 59.636 54.545 0.00 0.00 0.00 2.57
3543 5079 3.483954 CGGATGCTTCTGGAACCAT 57.516 52.632 0.38 0.00 0.00 3.55
3552 5312 1.468914 GAAAACTGGACCGGATGCTTC 59.531 52.381 9.46 0.00 0.00 3.86
3561 5321 4.906065 AACGGTAAAAGAAAACTGGACC 57.094 40.909 0.00 0.00 0.00 4.46
3580 5340 9.193133 GGAGAAAATGGAAAAGCTAGTAAAAAC 57.807 33.333 0.00 0.00 0.00 2.43
3586 5346 5.635120 ACAGGAGAAAATGGAAAAGCTAGT 58.365 37.500 0.00 0.00 0.00 2.57
3622 5382 8.900983 TTTCCAAATAAACCCTGAAATTTCTG 57.099 30.769 18.64 17.22 0.00 3.02
3633 5393 8.846943 ACATTTTCTGATTTCCAAATAAACCC 57.153 30.769 0.00 0.00 0.00 4.11
3692 5452 9.426837 CTCCATTTTGCAAAAAGAATCATTCTA 57.573 29.630 27.10 1.16 39.61 2.10
3693 5453 8.152246 TCTCCATTTTGCAAAAAGAATCATTCT 58.848 29.630 27.10 5.17 43.15 2.40
3694 5454 8.314143 TCTCCATTTTGCAAAAAGAATCATTC 57.686 30.769 27.10 0.00 0.00 2.67
3696 5456 7.935210 AGTTCTCCATTTTGCAAAAAGAATCAT 59.065 29.630 27.61 18.85 29.92 2.45
3698 5458 7.719778 AGTTCTCCATTTTGCAAAAAGAATC 57.280 32.000 27.61 22.31 29.92 2.52
3700 5460 7.920160 AAAGTTCTCCATTTTGCAAAAAGAA 57.080 28.000 27.10 25.23 0.00 2.52
3701 5461 7.605691 TCAAAAGTTCTCCATTTTGCAAAAAGA 59.394 29.630 27.10 23.24 43.09 2.52
3702 5462 7.750769 TCAAAAGTTCTCCATTTTGCAAAAAG 58.249 30.769 27.10 22.28 43.09 2.27
3741 5503 4.754618 AGCAAATTTCAAAAATCCCGAACC 59.245 37.500 0.00 0.00 0.00 3.62
3762 5524 7.440856 TCTGAACCAAATTTGAAATTACCAAGC 59.559 33.333 19.86 0.00 0.00 4.01
3924 5712 9.922305 GAGATGTAATATAGTGTGTTTTTGCTC 57.078 33.333 0.00 0.00 0.00 4.26
3925 5713 9.448438 TGAGATGTAATATAGTGTGTTTTTGCT 57.552 29.630 0.00 0.00 0.00 3.91
3926 5714 9.490663 GTGAGATGTAATATAGTGTGTTTTTGC 57.509 33.333 0.00 0.00 0.00 3.68
3988 5776 1.049402 GGCACCCCTAACTAGGCTAG 58.951 60.000 19.83 19.83 42.26 3.42
3990 5778 4.068257 GGCACCCCTAACTAGGCT 57.932 61.111 0.00 0.00 42.26 4.58
4030 5818 7.919313 TCGGAATACAAAGATATAACACGTC 57.081 36.000 0.00 0.00 0.00 4.34
4031 5819 8.139350 TCATCGGAATACAAAGATATAACACGT 58.861 33.333 0.00 0.00 0.00 4.49
4094 5897 9.935682 CTTATTTGACGTATAGTGCATCAATTT 57.064 29.630 0.00 0.00 0.00 1.82
4096 5899 7.226523 TGCTTATTTGACGTATAGTGCATCAAT 59.773 33.333 0.00 0.00 0.00 2.57
4101 5904 6.018262 GGATTGCTTATTTGACGTATAGTGCA 60.018 38.462 0.00 0.00 0.00 4.57
4105 5908 5.389516 GCGGGATTGCTTATTTGACGTATAG 60.390 44.000 0.00 0.00 0.00 1.31
4106 5909 4.449743 GCGGGATTGCTTATTTGACGTATA 59.550 41.667 0.00 0.00 0.00 1.47
4109 5912 1.400494 GCGGGATTGCTTATTTGACGT 59.600 47.619 0.00 0.00 0.00 4.34
4120 5923 2.409870 CCAGGACTTGCGGGATTGC 61.410 63.158 0.00 0.00 0.00 3.56
4121 5924 2.409870 GCCAGGACTTGCGGGATTG 61.410 63.158 0.00 0.00 0.00 2.67
4122 5925 2.044946 GCCAGGACTTGCGGGATT 60.045 61.111 0.00 0.00 0.00 3.01
4123 5926 2.683465 ATGCCAGGACTTGCGGGAT 61.683 57.895 0.00 0.00 0.00 3.85
4131 5934 0.111061 TGCTTTGTCATGCCAGGACT 59.889 50.000 11.14 0.00 36.26 3.85
4139 5942 3.366273 GGTGTATGTGGTGCTTTGTCATG 60.366 47.826 0.00 0.00 0.00 3.07
4143 5946 2.656947 AGGTGTATGTGGTGCTTTGT 57.343 45.000 0.00 0.00 0.00 2.83
4153 5956 3.389866 TGGCCCACTAATAGGTGTATGT 58.610 45.455 0.00 0.00 35.63 2.29
4154 5957 4.640771 ATGGCCCACTAATAGGTGTATG 57.359 45.455 0.00 0.00 35.63 2.39
4155 5958 5.663158 AAATGGCCCACTAATAGGTGTAT 57.337 39.130 0.00 0.00 35.63 2.29
4157 5960 4.278310 GAAAATGGCCCACTAATAGGTGT 58.722 43.478 0.00 0.00 35.63 4.16
4158 5961 3.636764 GGAAAATGGCCCACTAATAGGTG 59.363 47.826 0.00 0.00 37.00 4.00
4159 5962 3.687264 CGGAAAATGGCCCACTAATAGGT 60.687 47.826 0.00 0.00 0.00 3.08
4186 5989 0.541863 GATGTCCACCCAATCGAGGT 59.458 55.000 0.00 0.00 38.48 3.85
4190 5993 0.726827 CAACGATGTCCACCCAATCG 59.273 55.000 2.96 2.96 40.21 3.34
4209 6012 3.384532 CAACCATGGGCAGGGCAC 61.385 66.667 18.09 0.00 35.25 5.01
4213 6016 0.331278 TTACCTCAACCATGGGCAGG 59.669 55.000 18.09 18.97 0.00 4.85
4217 6020 4.580580 GCTAGAAATTACCTCAACCATGGG 59.419 45.833 18.09 0.00 0.00 4.00
4219 6022 4.876107 ACGCTAGAAATTACCTCAACCATG 59.124 41.667 0.00 0.00 0.00 3.66
4221 6024 4.546829 ACGCTAGAAATTACCTCAACCA 57.453 40.909 0.00 0.00 0.00 3.67
4222 6025 5.874895 AAACGCTAGAAATTACCTCAACC 57.125 39.130 0.00 0.00 0.00 3.77
4223 6026 7.743400 GTGTTAAACGCTAGAAATTACCTCAAC 59.257 37.037 0.00 0.00 0.00 3.18
4224 6027 7.441760 TGTGTTAAACGCTAGAAATTACCTCAA 59.558 33.333 0.00 0.00 0.00 3.02
4225 6028 6.930164 TGTGTTAAACGCTAGAAATTACCTCA 59.070 34.615 0.00 0.00 0.00 3.86
4226 6029 7.355332 TGTGTTAAACGCTAGAAATTACCTC 57.645 36.000 0.00 0.00 0.00 3.85
4227 6030 7.822822 AGATGTGTTAAACGCTAGAAATTACCT 59.177 33.333 0.00 0.00 0.00 3.08
4228 6031 7.971455 AGATGTGTTAAACGCTAGAAATTACC 58.029 34.615 0.00 0.00 0.00 2.85
4235 6038 9.678941 CTCATATAAGATGTGTTAAACGCTAGA 57.321 33.333 0.00 0.00 0.00 2.43
4236 6039 8.428536 GCTCATATAAGATGTGTTAAACGCTAG 58.571 37.037 0.00 0.00 0.00 3.42
4237 6040 8.141909 AGCTCATATAAGATGTGTTAAACGCTA 58.858 33.333 0.00 0.00 0.00 4.26
4238 6041 6.986817 AGCTCATATAAGATGTGTTAAACGCT 59.013 34.615 0.00 0.00 0.00 5.07
4239 6042 7.178712 AGCTCATATAAGATGTGTTAAACGC 57.821 36.000 0.00 0.00 0.00 4.84
4240 6043 9.244799 TGTAGCTCATATAAGATGTGTTAAACG 57.755 33.333 0.00 0.00 0.00 3.60
4270 6073 7.703058 ATTAGTTTTGACTAATTGGAGTGGG 57.297 36.000 6.09 0.00 39.18 4.61
4283 6086 5.107133 TGTCGCTAGCCTATTAGTTTTGAC 58.893 41.667 9.66 6.59 0.00 3.18
4290 6093 4.521130 TGGAATGTCGCTAGCCTATTAG 57.479 45.455 9.66 0.00 0.00 1.73
4295 6098 2.320781 ACTATGGAATGTCGCTAGCCT 58.679 47.619 9.66 0.00 0.00 4.58
4296 6099 2.821991 ACTATGGAATGTCGCTAGCC 57.178 50.000 9.66 0.00 0.00 3.93
4304 6107 6.549433 TTCCGGTACTAAACTATGGAATGT 57.451 37.500 0.00 0.00 32.58 2.71
4343 6146 1.065418 GGAATCACACACTACTGGGGG 60.065 57.143 0.00 0.00 0.00 5.40
4344 6147 1.909302 AGGAATCACACACTACTGGGG 59.091 52.381 0.00 0.00 0.00 4.96
4345 6148 5.359194 AATAGGAATCACACACTACTGGG 57.641 43.478 0.00 0.00 0.00 4.45
4346 6149 5.043903 CGAATAGGAATCACACACTACTGG 58.956 45.833 0.00 0.00 0.00 4.00
4347 6150 5.651530 ACGAATAGGAATCACACACTACTG 58.348 41.667 0.00 0.00 0.00 2.74
4348 6151 5.417894 TGACGAATAGGAATCACACACTACT 59.582 40.000 0.00 0.00 0.00 2.57
4349 6152 5.515626 GTGACGAATAGGAATCACACACTAC 59.484 44.000 0.00 0.00 40.95 2.73
4350 6153 5.393787 GGTGACGAATAGGAATCACACACTA 60.394 44.000 5.66 0.00 42.66 2.74
4351 6154 4.495422 GTGACGAATAGGAATCACACACT 58.505 43.478 0.00 0.00 40.95 3.55
4352 6155 3.617263 GGTGACGAATAGGAATCACACAC 59.383 47.826 5.66 0.00 42.66 3.82
4353 6156 3.259625 TGGTGACGAATAGGAATCACACA 59.740 43.478 5.66 0.00 42.66 3.72
4354 6157 3.857052 TGGTGACGAATAGGAATCACAC 58.143 45.455 5.66 0.00 42.66 3.82
4355 6158 4.250464 GTTGGTGACGAATAGGAATCACA 58.750 43.478 5.66 0.00 42.66 3.58
4356 6159 4.250464 TGTTGGTGACGAATAGGAATCAC 58.750 43.478 0.00 0.00 40.62 3.06
4357 6160 4.545208 TGTTGGTGACGAATAGGAATCA 57.455 40.909 0.00 0.00 0.00 2.57
4358 6161 4.332819 CCTTGTTGGTGACGAATAGGAATC 59.667 45.833 5.84 0.00 0.00 2.52
4359 6162 4.019681 TCCTTGTTGGTGACGAATAGGAAT 60.020 41.667 10.23 0.00 37.07 3.01
4360 6163 3.325425 TCCTTGTTGGTGACGAATAGGAA 59.675 43.478 10.23 0.00 37.07 3.36
4361 6164 2.901192 TCCTTGTTGGTGACGAATAGGA 59.099 45.455 9.09 9.09 37.07 2.94
4362 6165 3.056107 TCTCCTTGTTGGTGACGAATAGG 60.056 47.826 0.00 5.51 33.81 2.57
4363 6166 4.188247 TCTCCTTGTTGGTGACGAATAG 57.812 45.455 0.00 0.00 33.81 1.73
4364 6167 4.610605 TTCTCCTTGTTGGTGACGAATA 57.389 40.909 0.00 0.00 37.98 1.75
4365 6168 3.485463 TTCTCCTTGTTGGTGACGAAT 57.515 42.857 0.00 0.00 37.98 3.34
4366 6169 2.992124 TTCTCCTTGTTGGTGACGAA 57.008 45.000 0.00 0.00 37.98 3.85
4367 6170 2.992124 TTTCTCCTTGTTGGTGACGA 57.008 45.000 0.00 0.00 37.98 4.20
4368 6171 4.513692 TGTAATTTCTCCTTGTTGGTGACG 59.486 41.667 0.00 0.00 37.98 4.35
4369 6172 6.183360 TGTTGTAATTTCTCCTTGTTGGTGAC 60.183 38.462 0.00 0.00 37.98 3.67
4370 6173 5.888724 TGTTGTAATTTCTCCTTGTTGGTGA 59.111 36.000 0.00 0.00 36.63 4.02
4371 6174 6.142818 TGTTGTAATTTCTCCTTGTTGGTG 57.857 37.500 0.00 0.00 37.07 4.17
4372 6175 6.783708 TTGTTGTAATTTCTCCTTGTTGGT 57.216 33.333 0.00 0.00 37.07 3.67
4373 6176 7.114811 CGATTTGTTGTAATTTCTCCTTGTTGG 59.885 37.037 0.00 0.00 37.10 3.77
4374 6177 7.358352 GCGATTTGTTGTAATTTCTCCTTGTTG 60.358 37.037 0.00 0.00 0.00 3.33
4375 6178 6.640907 GCGATTTGTTGTAATTTCTCCTTGTT 59.359 34.615 0.00 0.00 0.00 2.83
4376 6179 6.149633 GCGATTTGTTGTAATTTCTCCTTGT 58.850 36.000 0.00 0.00 0.00 3.16
4383 6546 8.915654 AGATTTTCTGCGATTTGTTGTAATTTC 58.084 29.630 0.00 0.00 0.00 2.17
4399 6562 4.870991 AGGTAAAGTCGCTAGATTTTCTGC 59.129 41.667 0.00 0.00 37.47 4.26
4406 6569 1.536284 GCGCAGGTAAAGTCGCTAGAT 60.536 52.381 0.30 0.00 43.70 1.98



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.