Multiple sequence alignment - TraesCS3D01G034900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G034900 chr3D 100.000 5099 0 0 1 5099 12753784 12748686 0.000000e+00 9417.0
1 TraesCS3D01G034900 chr3D 86.072 2556 293 28 2245 4768 12553820 12551296 0.000000e+00 2689.0
2 TraesCS3D01G034900 chr3D 88.766 2163 195 29 2360 4484 12807981 12805829 0.000000e+00 2604.0
3 TraesCS3D01G034900 chr3D 86.476 2307 263 23 2167 4450 12802307 12800027 0.000000e+00 2486.0
4 TraesCS3D01G034900 chr3D 85.951 2356 282 29 2167 4496 12723761 12726093 0.000000e+00 2471.0
5 TraesCS3D01G034900 chr3D 86.020 2103 247 30 2240 4303 12505358 12503264 0.000000e+00 2211.0
6 TraesCS3D01G034900 chr3D 81.336 1961 324 32 2381 4311 12633863 12635811 0.000000e+00 1555.0
7 TraesCS3D01G034900 chr3D 88.971 1224 135 0 2360 3583 12703745 12704968 0.000000e+00 1513.0
8 TraesCS3D01G034900 chr3D 84.831 1536 196 18 835 2353 12803708 12802193 0.000000e+00 1511.0
9 TraesCS3D01G034900 chr3D 82.826 1642 214 35 743 2350 12809670 12808063 0.000000e+00 1408.0
10 TraesCS3D01G034900 chr3D 85.355 1352 168 15 964 2293 12722472 12723815 0.000000e+00 1373.0
11 TraesCS3D01G034900 chr3D 83.308 1306 199 13 975 2265 12506562 12505261 0.000000e+00 1186.0
12 TraesCS3D01G034900 chr3D 94.092 694 31 5 605 1296 12568419 12567734 0.000000e+00 1046.0
13 TraesCS3D01G034900 chr3D 85.067 971 132 7 1292 2251 12554998 12554030 0.000000e+00 977.0
14 TraesCS3D01G034900 chr3D 85.818 825 80 16 3582 4390 12710879 12711682 0.000000e+00 841.0
15 TraesCS3D01G034900 chr3D 85.880 602 35 25 49 609 12701807 12702399 3.400000e-166 595.0
16 TraesCS3D01G034900 chr3D 81.756 729 118 10 1633 2352 12702943 12703665 3.400000e-166 595.0
17 TraesCS3D01G034900 chr3D 86.894 557 40 20 48 581 12571627 12571081 1.220000e-165 593.0
18 TraesCS3D01G034900 chr3D 85.641 390 30 12 4359 4730 12598361 12597980 2.230000e-103 387.0
19 TraesCS3D01G034900 chr3D 85.673 349 29 9 274 609 12569109 12568769 1.050000e-91 348.0
20 TraesCS3D01G034900 chr3D 85.507 345 28 14 4757 5099 12502381 12502057 1.760000e-89 340.0
21 TraesCS3D01G034900 chr3D 91.146 192 6 4 605 791 12702751 12702936 3.050000e-62 250.0
22 TraesCS3D01G034900 chr3D 79.221 231 25 11 4176 4389 12503274 12503050 6.880000e-29 139.0
23 TraesCS3D01G034900 chr3D 100.000 75 0 0 5025 5099 12726276 12726350 6.880000e-29 139.0
24 TraesCS3D01G034900 chr3D 88.571 70 8 0 2245 2314 12633665 12633734 9.100000e-13 86.1
25 TraesCS3D01G034900 chr3A 87.397 2055 228 19 2360 4390 24597577 24599624 0.000000e+00 2331.0
26 TraesCS3D01G034900 chr3A 84.778 2030 276 25 2240 4242 24605856 24607879 0.000000e+00 2006.0
27 TraesCS3D01G034900 chr3A 83.243 1289 200 12 988 2265 24604670 24605953 0.000000e+00 1170.0
28 TraesCS3D01G034900 chr7A 82.470 1506 209 30 588 2077 10957145 10958611 0.000000e+00 1267.0
29 TraesCS3D01G034900 chr5D 79.710 1725 275 57 2806 4496 27310147 27311830 0.000000e+00 1177.0
30 TraesCS3D01G034900 chr5D 75.859 1280 264 34 969 2221 28480451 28481712 1.210000e-170 610.0
31 TraesCS3D01G034900 chr5A 78.576 1559 298 25 2417 3960 19106780 19108317 0.000000e+00 996.0
32 TraesCS3D01G034900 chr5A 75.956 1281 261 37 969 2221 19105467 19106728 2.610000e-172 616.0
33 TraesCS3D01G034900 chr5A 75.640 1133 224 37 1090 2197 18788995 18790100 2.720000e-142 516.0
34 TraesCS3D01G034900 chr1B 80.453 486 64 15 588 1063 2430237 2430701 4.890000e-90 342.0
35 TraesCS3D01G034900 chr1B 82.824 262 42 1 1068 1326 2433287 2433548 1.100000e-56 231.0
36 TraesCS3D01G034900 chrUn 77.695 269 47 10 991 1257 82036066 82035809 8.840000e-33 152.0
37 TraesCS3D01G034900 chr3B 93.617 47 3 0 176 222 18160329 18160283 2.550000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G034900 chr3D 12748686 12753784 5098 True 9417.000000 9417 100.000000 1 5099 1 chr3D.!!$R2 5098
1 TraesCS3D01G034900 chr3D 12800027 12809670 9643 True 2002.250000 2604 85.724750 743 4484 4 chr3D.!!$R6 3741
2 TraesCS3D01G034900 chr3D 12551296 12554998 3702 True 1833.000000 2689 85.569500 1292 4768 2 chr3D.!!$R4 3476
3 TraesCS3D01G034900 chr3D 12722472 12726350 3878 False 1327.666667 2471 90.435333 964 5099 3 chr3D.!!$F4 4135
4 TraesCS3D01G034900 chr3D 12502057 12506562 4505 True 969.000000 2211 83.514000 975 5099 4 chr3D.!!$R3 4124
5 TraesCS3D01G034900 chr3D 12710879 12711682 803 False 841.000000 841 85.818000 3582 4390 1 chr3D.!!$F1 808
6 TraesCS3D01G034900 chr3D 12633665 12635811 2146 False 820.550000 1555 84.953500 2245 4311 2 chr3D.!!$F2 2066
7 TraesCS3D01G034900 chr3D 12701807 12704968 3161 False 738.250000 1513 86.938250 49 3583 4 chr3D.!!$F3 3534
8 TraesCS3D01G034900 chr3D 12567734 12571627 3893 True 662.333333 1046 88.886333 48 1296 3 chr3D.!!$R5 1248
9 TraesCS3D01G034900 chr3A 24597577 24599624 2047 False 2331.000000 2331 87.397000 2360 4390 1 chr3A.!!$F1 2030
10 TraesCS3D01G034900 chr3A 24604670 24607879 3209 False 1588.000000 2006 84.010500 988 4242 2 chr3A.!!$F2 3254
11 TraesCS3D01G034900 chr7A 10957145 10958611 1466 False 1267.000000 1267 82.470000 588 2077 1 chr7A.!!$F1 1489
12 TraesCS3D01G034900 chr5D 27310147 27311830 1683 False 1177.000000 1177 79.710000 2806 4496 1 chr5D.!!$F1 1690
13 TraesCS3D01G034900 chr5D 28480451 28481712 1261 False 610.000000 610 75.859000 969 2221 1 chr5D.!!$F2 1252
14 TraesCS3D01G034900 chr5A 19105467 19108317 2850 False 806.000000 996 77.266000 969 3960 2 chr5A.!!$F2 2991
15 TraesCS3D01G034900 chr5A 18788995 18790100 1105 False 516.000000 516 75.640000 1090 2197 1 chr5A.!!$F1 1107
16 TraesCS3D01G034900 chr1B 2430237 2433548 3311 False 286.500000 342 81.638500 588 1326 2 chr1B.!!$F1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.324738 CCTAGCAGGTCAGGGAGTGA 60.325 60.000 0.00 0.00 0.00 3.41 F
1092 6402 0.322456 TACAACCCCAGCATCAGCAC 60.322 55.000 0.00 0.00 45.49 4.40 F
1300 6610 0.757935 TCCCGACCACTATGGCTACC 60.758 60.000 0.00 0.00 42.67 3.18 F
2203 7540 1.001378 GGCTTGTGAATTTGACACGCT 60.001 47.619 14.99 0.00 38.35 5.07 F
2243 7580 0.036010 AGCAATCACCTCACCGGAAG 60.036 55.000 9.46 4.83 36.31 3.46 F
3888 15429 0.316522 ACATCCATGGCGATCTCGAG 59.683 55.000 6.96 5.93 43.02 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 6732 0.482446 TGGAACCCAGCAAATGAGGT 59.518 50.0 0.0 0.0 34.90 3.85 R
2224 7561 0.036010 CTTCCGGTGAGGTGATTGCT 60.036 55.0 0.0 0.0 41.99 3.91 R
2225 7562 0.321653 ACTTCCGGTGAGGTGATTGC 60.322 55.0 0.0 0.0 41.99 3.56 R
3869 15404 0.316522 CTCGAGATCGCCATGGATGT 59.683 55.0 18.4 0.0 39.60 3.06 R
3939 15480 1.142688 AGAGCCCCACCACAAATCCT 61.143 55.0 0.0 0.0 0.00 3.24 R
4807 16880 0.029567 CGGATCGAGAGGAGGAAACG 59.970 60.0 0.0 0.0 0.00 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.906458 CAGCCTAGCAGGTCAGGG 59.094 66.667 4.45 0.00 37.80 4.45
18 19 1.687146 CAGCCTAGCAGGTCAGGGA 60.687 63.158 4.45 0.00 37.80 4.20
19 20 1.382420 AGCCTAGCAGGTCAGGGAG 60.382 63.158 4.45 0.00 37.80 4.30
20 21 1.687493 GCCTAGCAGGTCAGGGAGT 60.687 63.158 4.45 0.00 37.80 3.85
21 22 1.965754 GCCTAGCAGGTCAGGGAGTG 61.966 65.000 4.45 0.00 37.80 3.51
22 23 0.324738 CCTAGCAGGTCAGGGAGTGA 60.325 60.000 0.00 0.00 0.00 3.41
23 24 1.561643 CTAGCAGGTCAGGGAGTGAA 58.438 55.000 0.00 0.00 36.74 3.18
24 25 1.902508 CTAGCAGGTCAGGGAGTGAAA 59.097 52.381 0.00 0.00 36.74 2.69
25 26 1.366319 AGCAGGTCAGGGAGTGAAAT 58.634 50.000 0.00 0.00 36.74 2.17
26 27 1.280421 AGCAGGTCAGGGAGTGAAATC 59.720 52.381 0.00 0.00 36.74 2.17
27 28 1.280421 GCAGGTCAGGGAGTGAAATCT 59.720 52.381 0.00 0.00 36.74 2.40
28 29 2.938756 GCAGGTCAGGGAGTGAAATCTG 60.939 54.545 0.00 0.00 36.74 2.90
29 30 1.280421 AGGTCAGGGAGTGAAATCTGC 59.720 52.381 0.00 0.00 36.74 4.26
30 31 1.003580 GGTCAGGGAGTGAAATCTGCA 59.996 52.381 0.00 0.00 36.74 4.41
31 32 2.356535 GGTCAGGGAGTGAAATCTGCAT 60.357 50.000 0.00 0.00 36.74 3.96
32 33 3.350833 GTCAGGGAGTGAAATCTGCATT 58.649 45.455 0.00 0.00 36.74 3.56
33 34 3.376546 GTCAGGGAGTGAAATCTGCATTC 59.623 47.826 0.00 0.00 36.74 2.67
34 35 2.686915 CAGGGAGTGAAATCTGCATTCC 59.313 50.000 0.00 0.00 40.33 3.01
35 36 2.309755 AGGGAGTGAAATCTGCATTCCA 59.690 45.455 0.00 0.00 42.15 3.53
36 37 3.053095 AGGGAGTGAAATCTGCATTCCAT 60.053 43.478 0.00 0.00 42.15 3.41
37 38 4.166725 AGGGAGTGAAATCTGCATTCCATA 59.833 41.667 0.00 0.00 42.15 2.74
38 39 5.075493 GGGAGTGAAATCTGCATTCCATAT 58.925 41.667 0.00 0.00 42.15 1.78
39 40 6.044754 AGGGAGTGAAATCTGCATTCCATATA 59.955 38.462 0.00 0.00 42.15 0.86
40 41 6.373774 GGGAGTGAAATCTGCATTCCATATAG 59.626 42.308 0.00 0.00 42.15 1.31
41 42 6.939163 GGAGTGAAATCTGCATTCCATATAGT 59.061 38.462 0.00 0.00 40.64 2.12
42 43 8.097038 GGAGTGAAATCTGCATTCCATATAGTA 58.903 37.037 0.00 0.00 40.64 1.82
43 44 9.149225 GAGTGAAATCTGCATTCCATATAGTAG 57.851 37.037 0.00 0.00 0.00 2.57
44 45 8.874156 AGTGAAATCTGCATTCCATATAGTAGA 58.126 33.333 0.00 0.00 0.00 2.59
45 46 9.494271 GTGAAATCTGCATTCCATATAGTAGAA 57.506 33.333 0.00 0.00 0.00 2.10
96 97 6.456501 AGCCTTGTACTTACTGTAACTTGAG 58.543 40.000 0.00 0.00 32.25 3.02
143 170 6.957020 ACATATAAATAGGTAGCTCAGAGCCT 59.043 38.462 19.40 11.50 43.77 4.58
144 171 8.116669 ACATATAAATAGGTAGCTCAGAGCCTA 58.883 37.037 19.40 13.32 43.77 3.93
238 267 5.734720 CAGTAACTCCTTTCATTAGCCAGA 58.265 41.667 0.00 0.00 0.00 3.86
280 312 1.071385 CTTGTGACTTGGGAGTGCTCT 59.929 52.381 0.00 0.00 35.88 4.09
342 2645 7.661027 CCTTCCAAATTTCAGGCTTCAAAATAA 59.339 33.333 0.00 0.00 0.00 1.40
347 2650 7.544804 AATTTCAGGCTTCAAAATAAGGAGT 57.455 32.000 0.00 0.00 0.00 3.85
361 2664 1.220477 GGAGTGAGAGGCCTGCTTC 59.780 63.158 12.00 5.68 0.00 3.86
372 2675 1.690352 GGCCTGCTTCAATATGCCATT 59.310 47.619 0.00 0.00 38.73 3.16
386 2689 6.935741 ATATGCCATTAAGTAAGTTGCGAA 57.064 33.333 0.00 0.00 0.00 4.70
402 2705 0.729116 CGAAGCGCAATCCATGTTCT 59.271 50.000 11.47 0.00 0.00 3.01
403 2706 1.933181 CGAAGCGCAATCCATGTTCTA 59.067 47.619 11.47 0.00 0.00 2.10
404 2707 2.351418 CGAAGCGCAATCCATGTTCTAA 59.649 45.455 11.47 0.00 0.00 2.10
405 2708 3.685058 GAAGCGCAATCCATGTTCTAAC 58.315 45.455 11.47 0.00 0.00 2.34
406 2709 2.991250 AGCGCAATCCATGTTCTAACT 58.009 42.857 11.47 0.00 0.00 2.24
407 2710 3.347216 AGCGCAATCCATGTTCTAACTT 58.653 40.909 11.47 0.00 0.00 2.66
408 2711 3.375299 AGCGCAATCCATGTTCTAACTTC 59.625 43.478 11.47 0.00 0.00 3.01
411 2714 5.502544 GCGCAATCCATGTTCTAACTTCTAC 60.503 44.000 0.30 0.00 0.00 2.59
419 2722 5.464030 TGTTCTAACTTCTACCACTCACC 57.536 43.478 0.00 0.00 0.00 4.02
429 2732 0.751643 ACCACTCACCAACAGTTGCC 60.752 55.000 7.88 0.00 0.00 4.52
434 2737 2.233271 CTCACCAACAGTTGCCTGAAT 58.767 47.619 7.88 0.00 41.50 2.57
443 2746 3.057315 ACAGTTGCCTGAATGTTGCATAC 60.057 43.478 0.00 0.00 41.50 2.39
476 2779 0.756442 ACTGCTTTCCTTTGCCAGCA 60.756 50.000 0.00 0.00 39.98 4.41
496 2799 4.581824 AGCATTTCTTTCTTCTGCTTGTGA 59.418 37.500 0.00 0.00 40.08 3.58
512 2815 2.293170 TGTGATTTTGAGCACGGTTCA 58.707 42.857 0.00 0.00 37.83 3.18
525 2828 1.014352 CGGTTCAAAATCCGGCTAGG 58.986 55.000 0.00 0.00 42.61 3.02
526 2829 1.677820 CGGTTCAAAATCCGGCTAGGT 60.678 52.381 0.00 0.00 42.61 3.08
528 2831 3.203716 GGTTCAAAATCCGGCTAGGTAG 58.796 50.000 0.00 0.00 41.99 3.18
529 2832 3.370209 GGTTCAAAATCCGGCTAGGTAGT 60.370 47.826 0.00 0.00 41.99 2.73
573 2884 2.890311 TGTCATTTTGTGCTACTTGGGG 59.110 45.455 0.00 0.00 0.00 4.96
574 2885 1.892474 TCATTTTGTGCTACTTGGGGC 59.108 47.619 0.00 0.00 0.00 5.80
575 2886 1.617850 CATTTTGTGCTACTTGGGGCA 59.382 47.619 0.00 0.00 36.01 5.36
585 2900 0.402504 ACTTGGGGCACATTCCGTTA 59.597 50.000 0.00 0.00 0.00 3.18
614 3306 6.494842 TGCTCTTGTATGTTGTTTGAAGTTC 58.505 36.000 0.00 0.00 0.00 3.01
719 3417 2.734606 CACGCTTCAGATACAACCGAAA 59.265 45.455 0.00 0.00 0.00 3.46
722 3420 3.242413 CGCTTCAGATACAACCGAAATGG 60.242 47.826 0.00 0.00 46.41 3.16
1092 6402 0.322456 TACAACCCCAGCATCAGCAC 60.322 55.000 0.00 0.00 45.49 4.40
1100 6410 2.825387 GCATCAGCACGCCCATGA 60.825 61.111 0.00 0.00 41.58 3.07
1257 6567 1.022735 CTGGCCATGTCATCAAGCTC 58.977 55.000 5.51 0.00 0.00 4.09
1281 6591 1.078497 TCGCAATCCGAATGTGGCT 60.078 52.632 0.00 0.00 44.21 4.75
1300 6610 0.757935 TCCCGACCACTATGGCTACC 60.758 60.000 0.00 0.00 42.67 3.18
1422 6732 8.330247 TGTTTACTAGGGACAAATAGCCAAATA 58.670 33.333 0.00 0.00 0.00 1.40
1492 6802 2.369532 GGCATACCATTTACCGGTAGGA 59.630 50.000 21.81 12.73 42.13 2.94
1542 6852 3.073062 AGTTGCAGTATCTTGACCTTGGT 59.927 43.478 0.00 0.00 0.00 3.67
1543 6853 3.788227 TGCAGTATCTTGACCTTGGTT 57.212 42.857 0.00 0.00 0.00 3.67
1545 6855 5.435686 TGCAGTATCTTGACCTTGGTTAT 57.564 39.130 0.00 0.00 0.00 1.89
1546 6856 5.815581 TGCAGTATCTTGACCTTGGTTATT 58.184 37.500 0.00 0.00 0.00 1.40
1547 6857 5.647658 TGCAGTATCTTGACCTTGGTTATTG 59.352 40.000 0.00 0.00 0.00 1.90
1553 6884 2.790433 TGACCTTGGTTATTGTCCTGC 58.210 47.619 0.00 0.00 0.00 4.85
1625 6956 3.941629 TCCTTAGCATGAGGGGAGTAAT 58.058 45.455 0.00 0.00 34.93 1.89
1686 7017 9.566331 AATATGATTCCATCTCTGAGGGTTATA 57.434 33.333 4.59 0.00 34.82 0.98
1696 7027 9.527157 CATCTCTGAGGGTTATAGATCTTTCTA 57.473 37.037 0.00 0.00 38.79 2.10
1730 7061 6.587206 TGATTATGCAAACCAATCACTTCA 57.413 33.333 10.55 0.00 34.58 3.02
1735 7066 2.653890 CAAACCAATCACTTCAGCACG 58.346 47.619 0.00 0.00 0.00 5.34
1743 7074 5.106555 CCAATCACTTCAGCACGTTAATCTT 60.107 40.000 0.00 0.00 0.00 2.40
1769 7100 5.904362 AAACTTGAGAAGCTTGACTTGTT 57.096 34.783 2.10 0.63 39.29 2.83
1773 7104 5.591877 ACTTGAGAAGCTTGACTTGTTCAAT 59.408 36.000 2.10 0.00 43.54 2.57
1846 7177 2.561419 CTCAAGTACCTCGACCTTGGAA 59.439 50.000 0.00 0.00 36.94 3.53
1887 7218 3.910627 AGTTCCCTGACACACTAGGAAAT 59.089 43.478 0.00 0.00 38.30 2.17
1920 7251 5.649395 CCTTCAGGTGCTTGATATTTCAGAA 59.351 40.000 0.00 0.00 32.27 3.02
1933 7264 8.066612 TGATATTTCAGAAAATTGGAACCCTC 57.933 34.615 0.00 0.00 36.49 4.30
1935 7266 6.940430 ATTTCAGAAAATTGGAACCCTCAT 57.060 33.333 0.00 0.00 30.79 2.90
1945 7276 4.645863 TGGAACCCTCATATGATGATGG 57.354 45.455 5.72 3.80 46.62 3.51
1969 7303 2.162408 GGAAACCTGGAGAATCTTTGCG 59.838 50.000 0.00 0.00 33.73 4.85
1993 7327 5.478332 GGTTTGGAAATCATTGACCTCTCTT 59.522 40.000 0.00 0.00 0.00 2.85
2043 7380 2.189594 TGATGGAGAGTTTGCCACAG 57.810 50.000 0.00 0.00 36.92 3.66
2079 7416 7.722949 AAAATTGCAGGAGATGGATTTAAGA 57.277 32.000 0.00 0.00 0.00 2.10
2112 7449 2.033801 CACTGGAACTCTGCCAAACTTG 59.966 50.000 0.00 0.00 34.44 3.16
2136 7473 1.884235 GTGACTTCACCAGGTTGAGG 58.116 55.000 0.00 0.00 40.85 3.86
2142 7479 8.949612 GTGACTTCACCAGGTTGAGGATACTG 62.950 50.000 0.00 0.00 44.41 2.74
2189 7526 4.417426 GTAGTATACCACCATGGCTTGT 57.583 45.455 13.04 9.17 42.67 3.16
2190 7527 3.281727 AGTATACCACCATGGCTTGTG 57.718 47.619 13.04 1.81 42.67 3.33
2191 7528 2.843730 AGTATACCACCATGGCTTGTGA 59.156 45.455 13.04 0.00 42.67 3.58
2192 7529 2.897271 ATACCACCATGGCTTGTGAA 57.103 45.000 13.04 0.00 42.67 3.18
2193 7530 2.897271 TACCACCATGGCTTGTGAAT 57.103 45.000 13.04 0.00 42.67 2.57
2194 7531 2.014010 ACCACCATGGCTTGTGAATT 57.986 45.000 13.04 0.00 42.67 2.17
2195 7532 2.328319 ACCACCATGGCTTGTGAATTT 58.672 42.857 13.04 0.00 42.67 1.82
2196 7533 2.037511 ACCACCATGGCTTGTGAATTTG 59.962 45.455 13.04 0.00 42.67 2.32
2197 7534 2.299582 CCACCATGGCTTGTGAATTTGA 59.700 45.455 13.04 0.00 34.37 2.69
2198 7535 3.319755 CACCATGGCTTGTGAATTTGAC 58.680 45.455 13.04 0.00 34.37 3.18
2199 7536 2.964464 ACCATGGCTTGTGAATTTGACA 59.036 40.909 13.04 0.00 0.00 3.58
2200 7537 3.243839 ACCATGGCTTGTGAATTTGACAC 60.244 43.478 13.04 0.00 38.55 3.67
2201 7538 2.772568 TGGCTTGTGAATTTGACACG 57.227 45.000 0.00 0.00 40.61 4.49
2202 7539 1.268999 TGGCTTGTGAATTTGACACGC 60.269 47.619 8.60 8.60 40.61 5.34
2203 7540 1.001378 GGCTTGTGAATTTGACACGCT 60.001 47.619 14.99 0.00 38.35 5.07
2204 7541 2.543653 GGCTTGTGAATTTGACACGCTT 60.544 45.455 14.99 0.00 38.35 4.68
2205 7542 3.304391 GGCTTGTGAATTTGACACGCTTA 60.304 43.478 14.99 0.00 38.35 3.09
2206 7543 4.286910 GCTTGTGAATTTGACACGCTTAA 58.713 39.130 9.62 0.00 40.61 1.85
2207 7544 4.146443 GCTTGTGAATTTGACACGCTTAAC 59.854 41.667 9.62 0.00 40.61 2.01
2208 7545 4.884458 TGTGAATTTGACACGCTTAACA 57.116 36.364 0.00 0.00 40.61 2.41
2209 7546 5.236655 TGTGAATTTGACACGCTTAACAA 57.763 34.783 0.00 0.00 40.61 2.83
2210 7547 5.031578 TGTGAATTTGACACGCTTAACAAC 58.968 37.500 0.00 0.00 40.61 3.32
2211 7548 4.439776 GTGAATTTGACACGCTTAACAACC 59.560 41.667 0.00 0.00 0.00 3.77
2212 7549 3.636282 ATTTGACACGCTTAACAACCC 57.364 42.857 0.00 0.00 0.00 4.11
2213 7550 2.335316 TTGACACGCTTAACAACCCT 57.665 45.000 0.00 0.00 0.00 4.34
2214 7551 2.335316 TGACACGCTTAACAACCCTT 57.665 45.000 0.00 0.00 0.00 3.95
2215 7552 1.944024 TGACACGCTTAACAACCCTTG 59.056 47.619 0.00 0.00 0.00 3.61
2216 7553 2.215196 GACACGCTTAACAACCCTTGA 58.785 47.619 0.00 0.00 0.00 3.02
2217 7554 2.614983 GACACGCTTAACAACCCTTGAA 59.385 45.455 0.00 0.00 0.00 2.69
2218 7555 2.356695 ACACGCTTAACAACCCTTGAAC 59.643 45.455 0.00 0.00 0.00 3.18
2219 7556 2.616842 CACGCTTAACAACCCTTGAACT 59.383 45.455 0.00 0.00 0.00 3.01
2220 7557 2.876550 ACGCTTAACAACCCTTGAACTC 59.123 45.455 0.00 0.00 0.00 3.01
2221 7558 3.139077 CGCTTAACAACCCTTGAACTCT 58.861 45.455 0.00 0.00 0.00 3.24
2222 7559 3.564225 CGCTTAACAACCCTTGAACTCTT 59.436 43.478 0.00 0.00 0.00 2.85
2223 7560 4.036380 CGCTTAACAACCCTTGAACTCTTT 59.964 41.667 0.00 0.00 0.00 2.52
2224 7561 5.237779 CGCTTAACAACCCTTGAACTCTTTA 59.762 40.000 0.00 0.00 0.00 1.85
2225 7562 6.565999 CGCTTAACAACCCTTGAACTCTTTAG 60.566 42.308 0.00 0.00 0.00 1.85
2226 7563 6.628919 TTAACAACCCTTGAACTCTTTAGC 57.371 37.500 0.00 0.00 0.00 3.09
2227 7564 4.164843 ACAACCCTTGAACTCTTTAGCA 57.835 40.909 0.00 0.00 0.00 3.49
2228 7565 4.532834 ACAACCCTTGAACTCTTTAGCAA 58.467 39.130 0.00 0.00 0.00 3.91
2229 7566 5.140454 ACAACCCTTGAACTCTTTAGCAAT 58.860 37.500 0.00 0.00 0.00 3.56
2230 7567 5.241728 ACAACCCTTGAACTCTTTAGCAATC 59.758 40.000 0.00 0.00 0.00 2.67
2231 7568 4.985538 ACCCTTGAACTCTTTAGCAATCA 58.014 39.130 0.00 0.00 0.00 2.57
2232 7569 4.762251 ACCCTTGAACTCTTTAGCAATCAC 59.238 41.667 0.00 0.00 0.00 3.06
2233 7570 4.156739 CCCTTGAACTCTTTAGCAATCACC 59.843 45.833 0.00 0.00 0.00 4.02
2234 7571 5.006386 CCTTGAACTCTTTAGCAATCACCT 58.994 41.667 0.00 0.00 0.00 4.00
2235 7572 5.123027 CCTTGAACTCTTTAGCAATCACCTC 59.877 44.000 0.00 0.00 0.00 3.85
2236 7573 5.227569 TGAACTCTTTAGCAATCACCTCA 57.772 39.130 0.00 0.00 0.00 3.86
2237 7574 4.997395 TGAACTCTTTAGCAATCACCTCAC 59.003 41.667 0.00 0.00 0.00 3.51
2238 7575 3.944087 ACTCTTTAGCAATCACCTCACC 58.056 45.455 0.00 0.00 0.00 4.02
2239 7576 2.932614 CTCTTTAGCAATCACCTCACCG 59.067 50.000 0.00 0.00 0.00 4.94
2240 7577 2.009774 CTTTAGCAATCACCTCACCGG 58.990 52.381 0.00 0.00 39.35 5.28
2243 7580 0.036010 AGCAATCACCTCACCGGAAG 60.036 55.000 9.46 4.83 36.31 3.46
2254 7591 2.698797 CTCACCGGAAGTATACCACCAT 59.301 50.000 9.46 1.95 0.00 3.55
2303 7640 2.289694 CCCTTGAACTCGGTGACAATCT 60.290 50.000 0.00 0.00 0.00 2.40
2329 7810 1.030457 CGGAAGTATACCAGCCGAGT 58.970 55.000 18.53 0.00 44.43 4.18
2337 7818 0.766131 TACCAGCCGAGTTTGGGAAA 59.234 50.000 0.00 0.00 38.82 3.13
2342 7823 2.493278 CAGCCGAGTTTGGGAAATTGAT 59.507 45.455 0.00 0.00 0.00 2.57
2354 7979 6.017211 TGGGAAATTGATGTATCTGACCAT 57.983 37.500 0.00 0.00 0.00 3.55
2384 8009 7.418368 GGACCTCTCAAGTAATCATCTCAATGA 60.418 40.741 0.00 0.00 45.73 2.57
2395 8020 4.503910 TCATCTCAATGAAAGTGTACCCG 58.496 43.478 0.00 0.00 38.97 5.28
2406 8031 1.134491 AGTGTACCCGCTGAAATAGGC 60.134 52.381 0.00 0.00 0.00 3.93
2413 8038 1.303309 CGCTGAAATAGGCTCCCTTG 58.697 55.000 0.00 0.00 34.61 3.61
2419 8044 5.360999 GCTGAAATAGGCTCCCTTGTTAATT 59.639 40.000 0.00 0.00 34.61 1.40
2478 8103 3.059597 GTGTGATCACGGAAGAACACTTG 60.060 47.826 20.54 0.00 40.63 3.16
2517 8142 9.120538 AGTTTGAAGCAAATAGACTTGTCTTTA 57.879 29.630 8.66 0.00 35.74 1.85
2535 8160 8.364129 TGTCTTTAAACAATTTCAAGATTGCC 57.636 30.769 2.27 0.00 39.97 4.52
2561 8186 1.817099 CAGATTGGCGTGCTCCCTC 60.817 63.158 0.00 0.00 0.00 4.30
2571 8196 1.267121 GTGCTCCCTCTACACTGGAA 58.733 55.000 0.00 0.00 0.00 3.53
2657 8285 4.291540 TCACTGCACTTGACATTTCAAC 57.708 40.909 0.00 0.00 36.79 3.18
2673 8301 5.382664 TTTCAACCACTTCTCTAAAGGGT 57.617 39.130 0.00 0.00 0.00 4.34
2750 8378 6.065374 TCTCTAACAACCAAATAAGTGGCAA 58.935 36.000 0.00 0.00 43.00 4.52
2797 8425 6.575162 TGGCTTTTGAAAAACTCTATCTCC 57.425 37.500 0.00 0.00 0.00 3.71
2841 8469 4.223659 CAATACCTACGTTGCCAACAAAC 58.776 43.478 8.51 0.00 37.58 2.93
2858 8486 4.134563 ACAAACATCACCCTGTTAGACAC 58.865 43.478 0.00 0.00 38.38 3.67
2904 8532 4.394920 ACAATACCATCAAACCTTGTAGCG 59.605 41.667 0.00 0.00 0.00 4.26
2946 8574 6.092396 TGTGTATGCATTCAAATCAAATTGGC 59.908 34.615 3.54 0.00 0.00 4.52
3044 8672 5.743872 GTGAAGTTCCTCAATGTTTTGACAC 59.256 40.000 0.00 0.00 36.94 3.67
3058 8686 4.698201 TTTGACACCCACAACATAGAGA 57.302 40.909 0.00 0.00 0.00 3.10
3096 8724 8.637986 AGCAACAACAGTTTATCAGGAAAAATA 58.362 29.630 0.00 0.00 0.00 1.40
3378 9008 5.911178 AGAGGAATCCAGGTATATGGTTGAA 59.089 40.000 0.61 0.00 41.43 2.69
3385 9052 6.414732 TCCAGGTATATGGTTGAAGTTGAAG 58.585 40.000 0.00 0.00 41.43 3.02
3386 9053 6.012858 TCCAGGTATATGGTTGAAGTTGAAGT 60.013 38.462 0.00 0.00 41.43 3.01
3424 9100 6.097839 AGGTACTACCGAATTTGAAGCTGATA 59.902 38.462 0.00 0.00 44.90 2.15
3532 9214 2.637382 TCATGCAACTCCTTGACTGGTA 59.363 45.455 0.00 0.00 0.00 3.25
3869 15404 7.707624 AGAATTGTTCTGGAAATGATGCTTA 57.292 32.000 0.00 0.00 38.91 3.09
3888 15429 0.316522 ACATCCATGGCGATCTCGAG 59.683 55.000 6.96 5.93 43.02 4.04
3939 15480 3.572255 CCTTTTACTTTGGGCTTGTGCTA 59.428 43.478 0.00 0.00 39.59 3.49
4041 15582 3.005050 TCGACAAGGTGTACGATCAAGTT 59.995 43.478 0.00 0.00 29.77 2.66
4147 15692 3.825585 TGTGCTGCAACCTATTGAATGAA 59.174 39.130 2.77 0.00 38.15 2.57
4150 15695 4.082081 TGCTGCAACCTATTGAATGAAAGG 60.082 41.667 0.00 0.00 38.15 3.11
4200 15883 6.520272 AGATCTCCAGAAGCATGTGTTATAC 58.480 40.000 0.00 0.00 0.00 1.47
4201 15884 4.682787 TCTCCAGAAGCATGTGTTATACG 58.317 43.478 0.00 0.00 0.00 3.06
4262 15954 8.144478 TGTAGCTCTTCTGATACATTTATGACC 58.856 37.037 0.00 0.00 34.45 4.02
4270 15962 9.987272 TTCTGATACATTTATGACCTCACTATG 57.013 33.333 0.00 0.00 0.00 2.23
4297 15989 8.853345 GTCGAACTATTGTCGTAAATGTAAGAA 58.147 33.333 0.00 0.00 0.00 2.52
4390 16330 6.327934 CCTGAATAATTTGAGCACTTTCTGG 58.672 40.000 0.00 0.00 0.00 3.86
4391 16331 6.151648 CCTGAATAATTTGAGCACTTTCTGGA 59.848 38.462 0.00 0.00 34.51 3.86
4392 16332 7.147949 CCTGAATAATTTGAGCACTTTCTGGAT 60.148 37.037 0.00 0.00 34.51 3.41
4507 16462 8.879342 AATCTTGCACTTGTACTCTATGATAC 57.121 34.615 0.00 0.00 0.00 2.24
4525 16481 6.260870 TGATACACTCTCTGACTTTCTGAC 57.739 41.667 0.00 0.00 0.00 3.51
4526 16482 6.007076 TGATACACTCTCTGACTTTCTGACT 58.993 40.000 0.00 0.00 0.00 3.41
4527 16483 6.491745 TGATACACTCTCTGACTTTCTGACTT 59.508 38.462 0.00 0.00 0.00 3.01
4553 16553 1.468985 TGTGTTTGGTGTTGGACCTG 58.531 50.000 0.00 0.00 46.32 4.00
4564 16564 1.066454 GTTGGACCTGGGTTTGTTTCG 59.934 52.381 0.00 0.00 0.00 3.46
4577 16577 5.296531 GGGTTTGTTTCGTAGGTTTCAAGTA 59.703 40.000 0.00 0.00 0.00 2.24
4632 16632 0.674581 TCCTTGACTGCGCAATCCTG 60.675 55.000 17.22 8.71 0.00 3.86
4670 16675 6.573664 ATCAGCAGCAAGTGTAATTTAACA 57.426 33.333 0.00 0.00 0.00 2.41
4676 16681 8.143835 AGCAGCAAGTGTAATTTAACAAGATTT 58.856 29.630 0.00 0.00 0.00 2.17
4695 16700 9.979270 CAAGATTTAGACTTAAGCAAGTGTATG 57.021 33.333 1.29 0.00 45.18 2.39
4730 16735 8.055279 TGAATGATGGGAAAACAGAGAAATAC 57.945 34.615 0.00 0.00 0.00 1.89
4731 16736 7.890127 TGAATGATGGGAAAACAGAGAAATACT 59.110 33.333 0.00 0.00 0.00 2.12
4732 16737 7.636150 ATGATGGGAAAACAGAGAAATACTG 57.364 36.000 0.00 0.00 40.68 2.74
4734 16739 7.685481 TGATGGGAAAACAGAGAAATACTGTA 58.315 34.615 0.00 0.00 46.01 2.74
4787 16860 0.675083 CCAGCAATTGCAAGGTGACA 59.325 50.000 30.89 0.00 45.16 3.58
4835 16908 0.305922 CTCTCGATCCGCAATTTGCC 59.694 55.000 15.45 0.86 41.12 4.52
4880 16953 1.270732 ACAAGCTTCAGAGGCTCACTG 60.271 52.381 18.26 7.38 39.30 3.66
4905 16978 0.721154 TGCTACGCAAAAGCAGATCG 59.279 50.000 0.79 0.00 44.78 3.69
4906 16979 0.999406 GCTACGCAAAAGCAGATCGA 59.001 50.000 0.00 0.00 39.83 3.59
4909 16982 1.296432 CGCAAAAGCAGATCGAGCG 60.296 57.895 0.00 0.00 37.68 5.03
4918 16991 2.892425 GATCGAGCGGCAAGGTGG 60.892 66.667 1.45 0.00 0.00 4.61
4921 16994 4.680237 CGAGCGGCAAGGTGGTGA 62.680 66.667 1.45 0.00 0.00 4.02
4922 16995 3.050275 GAGCGGCAAGGTGGTGAC 61.050 66.667 1.45 0.00 0.00 3.67
4933 17006 1.909302 AGGTGGTGACATACTTGAGGG 59.091 52.381 0.00 0.00 46.14 4.30
4980 17053 7.593644 TCGTGTCATTCAAGGTGAATATATACG 59.406 37.037 18.35 18.35 44.60 3.06
4981 17054 7.593644 CGTGTCATTCAAGGTGAATATATACGA 59.406 37.037 19.01 5.96 44.60 3.43
4982 17055 8.916654 GTGTCATTCAAGGTGAATATATACGAG 58.083 37.037 3.27 0.00 44.60 4.18
4984 17057 8.304596 GTCATTCAAGGTGAATATATACGAGGA 58.695 37.037 3.27 0.00 44.60 3.71
4985 17058 8.523658 TCATTCAAGGTGAATATATACGAGGAG 58.476 37.037 3.27 0.00 44.60 3.69
4986 17059 8.523658 CATTCAAGGTGAATATATACGAGGAGA 58.476 37.037 3.27 0.00 44.60 3.71
4987 17060 8.473358 TTCAAGGTGAATATATACGAGGAGAA 57.527 34.615 0.00 0.00 30.26 2.87
4989 17062 6.497785 AGGTGAATATATACGAGGAGAACG 57.502 41.667 0.00 0.00 0.00 3.95
4990 17063 6.236409 AGGTGAATATATACGAGGAGAACGA 58.764 40.000 0.00 0.00 34.70 3.85
4991 17064 6.149142 AGGTGAATATATACGAGGAGAACGAC 59.851 42.308 0.00 0.00 34.70 4.34
4994 17067 8.074972 GTGAATATATACGAGGAGAACGACTTT 58.925 37.037 0.00 0.00 34.70 2.66
4995 17068 9.276590 TGAATATATACGAGGAGAACGACTTTA 57.723 33.333 0.00 0.00 34.70 1.85
4997 17070 8.845413 ATATATACGAGGAGAACGACTTTACT 57.155 34.615 0.00 0.00 34.70 2.24
4998 17071 3.828060 ACGAGGAGAACGACTTTACTC 57.172 47.619 0.00 0.00 34.70 2.59
5003 17076 4.722361 GGAGAACGACTTTACTCCTCAT 57.278 45.455 0.00 0.00 43.64 2.90
5004 17077 4.674475 GGAGAACGACTTTACTCCTCATC 58.326 47.826 0.00 0.00 43.64 2.92
5005 17078 4.158025 GGAGAACGACTTTACTCCTCATCA 59.842 45.833 0.00 0.00 43.64 3.07
5006 17079 5.317733 AGAACGACTTTACTCCTCATCAG 57.682 43.478 0.00 0.00 0.00 2.90
5009 17082 6.603997 AGAACGACTTTACTCCTCATCAGTAT 59.396 38.462 0.00 0.00 0.00 2.12
5011 17084 7.261829 ACGACTTTACTCCTCATCAGTATAC 57.738 40.000 0.00 0.00 0.00 1.47
5012 17085 6.018098 ACGACTTTACTCCTCATCAGTATACG 60.018 42.308 0.00 0.00 0.00 3.06
5013 17086 6.074544 ACTTTACTCCTCATCAGTATACGC 57.925 41.667 0.00 0.00 0.00 4.42
5014 17087 5.828859 ACTTTACTCCTCATCAGTATACGCT 59.171 40.000 0.00 0.00 0.00 5.07
5015 17088 5.690997 TTACTCCTCATCAGTATACGCTG 57.309 43.478 0.00 0.00 37.81 5.18
5016 17089 2.294791 ACTCCTCATCAGTATACGCTGC 59.705 50.000 0.00 0.00 36.49 5.25
5017 17090 2.294512 CTCCTCATCAGTATACGCTGCA 59.705 50.000 0.00 0.00 36.49 4.41
5018 17091 2.294512 TCCTCATCAGTATACGCTGCAG 59.705 50.000 10.11 10.11 36.49 4.41
5019 17092 2.608998 CCTCATCAGTATACGCTGCAGG 60.609 54.545 17.12 8.27 36.49 4.85
5020 17093 1.143305 CATCAGTATACGCTGCAGGC 58.857 55.000 17.12 6.97 36.49 4.85
5021 17094 1.043816 ATCAGTATACGCTGCAGGCT 58.956 50.000 17.12 0.00 39.13 4.58
5022 17095 1.687563 TCAGTATACGCTGCAGGCTA 58.312 50.000 17.12 3.38 39.13 3.93
5023 17096 1.609072 TCAGTATACGCTGCAGGCTAG 59.391 52.381 17.12 0.00 39.13 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.684386 CTCCCTGACCTGCTAGGCTG 61.684 65.000 0.00 0.00 39.63 4.85
1 2 1.382420 CTCCCTGACCTGCTAGGCT 60.382 63.158 0.00 0.00 39.63 4.58
2 3 1.687493 ACTCCCTGACCTGCTAGGC 60.687 63.158 2.50 0.00 39.63 3.93
3 4 0.324738 TCACTCCCTGACCTGCTAGG 60.325 60.000 0.00 1.16 42.49 3.02
4 5 1.561643 TTCACTCCCTGACCTGCTAG 58.438 55.000 0.00 0.00 0.00 3.42
5 6 2.024176 TTTCACTCCCTGACCTGCTA 57.976 50.000 0.00 0.00 0.00 3.49
6 7 1.280421 GATTTCACTCCCTGACCTGCT 59.720 52.381 0.00 0.00 0.00 4.24
7 8 1.280421 AGATTTCACTCCCTGACCTGC 59.720 52.381 0.00 0.00 0.00 4.85
8 9 2.938756 GCAGATTTCACTCCCTGACCTG 60.939 54.545 0.00 0.00 0.00 4.00
9 10 1.280421 GCAGATTTCACTCCCTGACCT 59.720 52.381 0.00 0.00 0.00 3.85
10 11 1.003580 TGCAGATTTCACTCCCTGACC 59.996 52.381 0.00 0.00 0.00 4.02
11 12 2.479566 TGCAGATTTCACTCCCTGAC 57.520 50.000 0.00 0.00 0.00 3.51
12 13 3.614092 GAATGCAGATTTCACTCCCTGA 58.386 45.455 0.00 0.00 0.00 3.86
13 14 2.686915 GGAATGCAGATTTCACTCCCTG 59.313 50.000 0.00 0.00 0.00 4.45
14 15 2.309755 TGGAATGCAGATTTCACTCCCT 59.690 45.455 0.00 0.00 0.00 4.20
15 16 2.726821 TGGAATGCAGATTTCACTCCC 58.273 47.619 0.00 0.00 0.00 4.30
16 17 6.939163 ACTATATGGAATGCAGATTTCACTCC 59.061 38.462 0.00 0.00 29.25 3.85
17 18 7.976135 ACTATATGGAATGCAGATTTCACTC 57.024 36.000 0.00 0.00 29.25 3.51
18 19 8.874156 TCTACTATATGGAATGCAGATTTCACT 58.126 33.333 0.00 0.00 29.25 3.41
19 20 9.494271 TTCTACTATATGGAATGCAGATTTCAC 57.506 33.333 0.00 0.00 29.25 3.18
35 36 9.847224 ACCCGAACAAATGATTTTCTACTATAT 57.153 29.630 0.00 0.00 0.00 0.86
36 37 9.104965 CACCCGAACAAATGATTTTCTACTATA 57.895 33.333 0.00 0.00 0.00 1.31
37 38 7.415206 GCACCCGAACAAATGATTTTCTACTAT 60.415 37.037 0.00 0.00 0.00 2.12
38 39 6.128117 GCACCCGAACAAATGATTTTCTACTA 60.128 38.462 0.00 0.00 0.00 1.82
39 40 5.335661 GCACCCGAACAAATGATTTTCTACT 60.336 40.000 0.00 0.00 0.00 2.57
40 41 4.857037 GCACCCGAACAAATGATTTTCTAC 59.143 41.667 0.00 0.00 0.00 2.59
41 42 4.082463 GGCACCCGAACAAATGATTTTCTA 60.082 41.667 0.00 0.00 0.00 2.10
42 43 3.306019 GGCACCCGAACAAATGATTTTCT 60.306 43.478 0.00 0.00 0.00 2.52
43 44 2.993220 GGCACCCGAACAAATGATTTTC 59.007 45.455 0.00 0.00 0.00 2.29
44 45 2.366916 TGGCACCCGAACAAATGATTTT 59.633 40.909 0.00 0.00 0.00 1.82
45 46 1.967066 TGGCACCCGAACAAATGATTT 59.033 42.857 0.00 0.00 0.00 2.17
46 47 1.626686 TGGCACCCGAACAAATGATT 58.373 45.000 0.00 0.00 0.00 2.57
143 170 7.472100 GCAGATTTCTCTCCTTTACCTGCTATA 60.472 40.741 0.00 0.00 40.68 1.31
144 171 6.687647 GCAGATTTCTCTCCTTTACCTGCTAT 60.688 42.308 0.00 0.00 40.68 2.97
153 180 4.263639 TGGATGTGCAGATTTCTCTCCTTT 60.264 41.667 0.00 0.00 0.00 3.11
238 267 8.695456 ACAAGTTCATCAAAATGTAAGGTCTTT 58.305 29.630 0.00 0.00 34.32 2.52
243 272 7.651808 AGTCACAAGTTCATCAAAATGTAAGG 58.348 34.615 0.00 0.00 34.32 2.69
247 279 6.275335 CCAAGTCACAAGTTCATCAAAATGT 58.725 36.000 0.00 0.00 34.32 2.71
280 312 7.984050 GGAGAAACATCAAGAATCTGATCTGTA 59.016 37.037 0.00 0.00 33.66 2.74
342 2645 1.229464 AAGCAGGCCTCTCACTCCT 60.229 57.895 0.00 0.00 0.00 3.69
347 2650 2.747467 GCATATTGAAGCAGGCCTCTCA 60.747 50.000 0.00 2.97 0.00 3.27
361 2664 6.724263 TCGCAACTTACTTAATGGCATATTG 58.276 36.000 0.00 0.00 0.00 1.90
386 2689 2.991250 AGTTAGAACATGGATTGCGCT 58.009 42.857 9.73 0.00 0.00 5.92
402 2705 4.652421 ACTGTTGGTGAGTGGTAGAAGTTA 59.348 41.667 0.00 0.00 0.00 2.24
403 2706 3.454812 ACTGTTGGTGAGTGGTAGAAGTT 59.545 43.478 0.00 0.00 0.00 2.66
404 2707 3.039011 ACTGTTGGTGAGTGGTAGAAGT 58.961 45.455 0.00 0.00 0.00 3.01
405 2708 3.753294 ACTGTTGGTGAGTGGTAGAAG 57.247 47.619 0.00 0.00 0.00 2.85
406 2709 3.804036 CAACTGTTGGTGAGTGGTAGAA 58.196 45.455 12.66 0.00 0.00 2.10
407 2710 2.484770 GCAACTGTTGGTGAGTGGTAGA 60.485 50.000 21.01 0.00 0.00 2.59
408 2711 1.873591 GCAACTGTTGGTGAGTGGTAG 59.126 52.381 21.01 0.00 0.00 3.18
411 2714 2.032981 GGCAACTGTTGGTGAGTGG 58.967 57.895 21.01 0.00 0.00 4.00
443 2746 2.259204 CAGTGGGTTGCCGCATTG 59.741 61.111 0.00 0.00 35.49 2.82
455 2758 0.316204 CTGGCAAAGGAAAGCAGTGG 59.684 55.000 0.00 0.00 0.00 4.00
476 2779 8.199449 TCAAAATCACAAGCAGAAGAAAGAAAT 58.801 29.630 0.00 0.00 0.00 2.17
512 2815 3.606687 CAACACTACCTAGCCGGATTTT 58.393 45.455 5.05 0.00 36.31 1.82
521 2824 2.431057 CTGTAGCCCCAACACTACCTAG 59.569 54.545 0.00 0.00 38.38 3.02
522 2825 2.043389 TCTGTAGCCCCAACACTACCTA 59.957 50.000 0.00 0.00 38.38 3.08
525 2828 1.900486 AGTCTGTAGCCCCAACACTAC 59.100 52.381 0.00 0.00 39.38 2.73
526 2829 2.320681 AGTCTGTAGCCCCAACACTA 57.679 50.000 0.00 0.00 0.00 2.74
528 2831 3.244457 ACTTTAGTCTGTAGCCCCAACAC 60.244 47.826 0.00 0.00 0.00 3.32
529 2832 2.976882 ACTTTAGTCTGTAGCCCCAACA 59.023 45.455 0.00 0.00 0.00 3.33
573 2884 3.375299 AGAGCAGAATTAACGGAATGTGC 59.625 43.478 9.92 9.92 38.07 4.57
574 2885 5.106555 ACAAGAGCAGAATTAACGGAATGTG 60.107 40.000 0.00 0.00 0.00 3.21
575 2886 5.003804 ACAAGAGCAGAATTAACGGAATGT 58.996 37.500 0.00 0.00 0.00 2.71
578 2893 6.170506 ACATACAAGAGCAGAATTAACGGAA 58.829 36.000 0.00 0.00 0.00 4.30
585 2900 7.275888 TCAAACAACATACAAGAGCAGAATT 57.724 32.000 0.00 0.00 0.00 2.17
656 3354 9.838339 CTAGTTACTATTCCAAATCTGACCATT 57.162 33.333 0.00 0.00 0.00 3.16
657 3355 7.934120 GCTAGTTACTATTCCAAATCTGACCAT 59.066 37.037 0.00 0.00 0.00 3.55
719 3417 3.244770 ACGGTACTGTCAAAATCACCCAT 60.245 43.478 0.04 0.00 0.00 4.00
722 3420 3.059188 CACACGGTACTGTCAAAATCACC 60.059 47.826 3.76 0.00 0.00 4.02
1257 6567 1.942657 ACATTCGGATTGCGAAGATGG 59.057 47.619 17.80 9.93 0.00 3.51
1281 6591 0.757935 GGTAGCCATAGTGGTCGGGA 60.758 60.000 0.00 0.00 40.46 5.14
1422 6732 0.482446 TGGAACCCAGCAAATGAGGT 59.518 50.000 0.00 0.00 34.90 3.85
1492 6802 5.104193 ACAGATTACCAAGATGAGAAGGCAT 60.104 40.000 0.00 0.00 0.00 4.40
1542 6852 6.040247 CGTTGAGTACATAGCAGGACAATAA 58.960 40.000 0.00 0.00 0.00 1.40
1543 6853 5.451381 CCGTTGAGTACATAGCAGGACAATA 60.451 44.000 0.00 0.00 0.00 1.90
1545 6855 3.368013 CCGTTGAGTACATAGCAGGACAA 60.368 47.826 0.00 0.00 0.00 3.18
1546 6856 2.165641 CCGTTGAGTACATAGCAGGACA 59.834 50.000 0.00 0.00 0.00 4.02
1547 6857 2.426024 TCCGTTGAGTACATAGCAGGAC 59.574 50.000 0.00 0.00 0.00 3.85
1553 6884 6.382608 CAGGTGATATCCGTTGAGTACATAG 58.617 44.000 0.00 0.00 0.00 2.23
1625 6956 1.050988 GTCAGCTATCCCTGGGAGCA 61.051 60.000 24.14 13.27 34.05 4.26
1630 6961 1.449353 GCCAGTCAGCTATCCCTGG 59.551 63.158 13.16 13.16 45.87 4.45
1696 7027 6.265196 TGGTTTGCATAATCAAGAAGACAGTT 59.735 34.615 0.00 0.00 0.00 3.16
1711 7042 3.825585 TGCTGAAGTGATTGGTTTGCATA 59.174 39.130 0.00 0.00 0.00 3.14
1712 7043 2.629137 TGCTGAAGTGATTGGTTTGCAT 59.371 40.909 0.00 0.00 0.00 3.96
1730 7061 7.225931 TCTCAAGTTTTGTAAGATTAACGTGCT 59.774 33.333 0.00 0.00 32.49 4.40
1735 7066 9.952188 AAGCTTCTCAAGTTTTGTAAGATTAAC 57.048 29.630 0.00 0.00 34.32 2.01
1743 7074 6.374333 ACAAGTCAAGCTTCTCAAGTTTTGTA 59.626 34.615 0.00 0.00 34.69 2.41
1769 7100 8.390354 CGAGTGAGTGCTCAAAATAATTATTGA 58.610 33.333 11.42 6.42 41.85 2.57
1773 7104 5.641636 TGCGAGTGAGTGCTCAAAATAATTA 59.358 36.000 3.19 0.00 41.85 1.40
1846 7177 6.295632 GGGAACTGGCCAAATAGTTTGTTATT 60.296 38.462 7.01 0.00 37.27 1.40
1905 7236 7.278646 GGGTTCCAATTTTCTGAAATATCAAGC 59.721 37.037 3.31 3.99 34.44 4.01
1920 7251 7.534723 CATCATCATATGAGGGTTCCAATTT 57.465 36.000 16.79 0.00 43.53 1.82
1933 7264 4.217767 CAGGTTTCCTGCCATCATCATATG 59.782 45.833 2.77 0.00 45.13 1.78
1935 7266 3.824133 CAGGTTTCCTGCCATCATCATA 58.176 45.455 2.77 0.00 45.13 2.15
1969 7303 5.012893 AGAGAGGTCAATGATTTCCAAACC 58.987 41.667 0.00 0.00 0.00 3.27
2079 7416 6.294176 GCAGAGTTCCAGTGAAATTGTTGTAT 60.294 38.462 0.00 0.00 30.79 2.29
2112 7449 3.070018 CAACCTGGTGAAGTCACTGATC 58.930 50.000 11.07 0.00 45.73 2.92
2136 7473 0.747255 TTCCGCTCAGGCTCAGTATC 59.253 55.000 0.00 0.00 40.77 2.24
2142 7479 1.578206 GGTTGTTTCCGCTCAGGCTC 61.578 60.000 0.00 0.00 40.77 4.70
2169 7506 4.034410 TCACAAGCCATGGTGGTATACTA 58.966 43.478 14.67 0.00 40.46 1.82
2170 7507 2.843730 TCACAAGCCATGGTGGTATACT 59.156 45.455 14.67 0.00 40.46 2.12
2171 7508 3.275617 TCACAAGCCATGGTGGTATAC 57.724 47.619 14.67 0.00 40.46 1.47
2172 7509 4.518278 ATTCACAAGCCATGGTGGTATA 57.482 40.909 14.67 1.63 40.46 1.47
2173 7510 2.897271 TTCACAAGCCATGGTGGTAT 57.103 45.000 14.67 0.00 40.46 2.73
2174 7511 2.897271 ATTCACAAGCCATGGTGGTA 57.103 45.000 14.67 0.00 40.46 3.25
2175 7512 2.014010 AATTCACAAGCCATGGTGGT 57.986 45.000 14.67 6.43 40.46 4.16
2176 7513 2.299582 TCAAATTCACAAGCCATGGTGG 59.700 45.455 14.67 5.75 41.55 4.61
2177 7514 3.243805 TGTCAAATTCACAAGCCATGGTG 60.244 43.478 14.67 7.25 36.36 4.17
2178 7515 2.964464 TGTCAAATTCACAAGCCATGGT 59.036 40.909 14.67 0.00 0.00 3.55
2179 7516 3.319755 GTGTCAAATTCACAAGCCATGG 58.680 45.455 7.63 7.63 36.05 3.66
2180 7517 2.981805 CGTGTCAAATTCACAAGCCATG 59.018 45.455 0.00 0.00 35.79 3.66
2181 7518 2.607771 GCGTGTCAAATTCACAAGCCAT 60.608 45.455 13.94 0.00 41.67 4.40
2182 7519 1.268999 GCGTGTCAAATTCACAAGCCA 60.269 47.619 13.94 0.00 41.67 4.75
2183 7520 1.001378 AGCGTGTCAAATTCACAAGCC 60.001 47.619 18.55 7.03 46.66 4.35
2184 7521 2.405892 AGCGTGTCAAATTCACAAGC 57.594 45.000 15.99 15.99 46.06 4.01
2185 7522 5.270083 TGTTAAGCGTGTCAAATTCACAAG 58.730 37.500 0.00 0.00 35.79 3.16
2186 7523 5.236655 TGTTAAGCGTGTCAAATTCACAA 57.763 34.783 0.00 0.00 35.79 3.33
2187 7524 4.884458 TGTTAAGCGTGTCAAATTCACA 57.116 36.364 0.00 0.00 35.79 3.58
2188 7525 4.439776 GGTTGTTAAGCGTGTCAAATTCAC 59.560 41.667 0.00 0.00 0.00 3.18
2189 7526 4.498345 GGGTTGTTAAGCGTGTCAAATTCA 60.498 41.667 0.00 0.00 0.00 2.57
2190 7527 3.978855 GGGTTGTTAAGCGTGTCAAATTC 59.021 43.478 0.00 0.00 0.00 2.17
2191 7528 3.634910 AGGGTTGTTAAGCGTGTCAAATT 59.365 39.130 0.00 0.00 0.00 1.82
2192 7529 3.219281 AGGGTTGTTAAGCGTGTCAAAT 58.781 40.909 0.00 0.00 0.00 2.32
2193 7530 2.645802 AGGGTTGTTAAGCGTGTCAAA 58.354 42.857 0.00 0.00 0.00 2.69
2194 7531 2.335316 AGGGTTGTTAAGCGTGTCAA 57.665 45.000 0.00 0.00 0.00 3.18
2195 7532 1.944024 CAAGGGTTGTTAAGCGTGTCA 59.056 47.619 0.00 0.00 0.00 3.58
2196 7533 2.215196 TCAAGGGTTGTTAAGCGTGTC 58.785 47.619 0.00 0.00 0.00 3.67
2197 7534 2.335316 TCAAGGGTTGTTAAGCGTGT 57.665 45.000 0.00 0.00 0.00 4.49
2198 7535 2.616842 AGTTCAAGGGTTGTTAAGCGTG 59.383 45.455 0.00 0.00 0.00 5.34
2199 7536 2.876550 GAGTTCAAGGGTTGTTAAGCGT 59.123 45.455 0.00 0.00 0.00 5.07
2200 7537 3.139077 AGAGTTCAAGGGTTGTTAAGCG 58.861 45.455 0.00 0.00 0.00 4.68
2201 7538 5.515797 AAAGAGTTCAAGGGTTGTTAAGC 57.484 39.130 0.00 0.00 0.00 3.09
2202 7539 6.262273 TGCTAAAGAGTTCAAGGGTTGTTAAG 59.738 38.462 0.00 0.00 0.00 1.85
2203 7540 6.123651 TGCTAAAGAGTTCAAGGGTTGTTAA 58.876 36.000 0.00 0.00 0.00 2.01
2204 7541 5.686753 TGCTAAAGAGTTCAAGGGTTGTTA 58.313 37.500 0.00 0.00 0.00 2.41
2205 7542 4.532834 TGCTAAAGAGTTCAAGGGTTGTT 58.467 39.130 0.00 0.00 0.00 2.83
2206 7543 4.164843 TGCTAAAGAGTTCAAGGGTTGT 57.835 40.909 0.00 0.00 0.00 3.32
2207 7544 5.241506 TGATTGCTAAAGAGTTCAAGGGTTG 59.758 40.000 0.00 0.00 0.00 3.77
2208 7545 5.241728 GTGATTGCTAAAGAGTTCAAGGGTT 59.758 40.000 0.00 0.00 0.00 4.11
2209 7546 4.762251 GTGATTGCTAAAGAGTTCAAGGGT 59.238 41.667 0.00 0.00 0.00 4.34
2210 7547 4.156739 GGTGATTGCTAAAGAGTTCAAGGG 59.843 45.833 0.00 0.00 0.00 3.95
2211 7548 5.006386 AGGTGATTGCTAAAGAGTTCAAGG 58.994 41.667 0.00 0.00 0.00 3.61
2212 7549 5.702670 TGAGGTGATTGCTAAAGAGTTCAAG 59.297 40.000 0.00 0.00 0.00 3.02
2213 7550 5.470098 GTGAGGTGATTGCTAAAGAGTTCAA 59.530 40.000 0.00 0.00 0.00 2.69
2214 7551 4.997395 GTGAGGTGATTGCTAAAGAGTTCA 59.003 41.667 0.00 0.00 0.00 3.18
2215 7552 4.393371 GGTGAGGTGATTGCTAAAGAGTTC 59.607 45.833 0.00 0.00 0.00 3.01
2216 7553 4.327680 GGTGAGGTGATTGCTAAAGAGTT 58.672 43.478 0.00 0.00 0.00 3.01
2217 7554 3.617531 CGGTGAGGTGATTGCTAAAGAGT 60.618 47.826 0.00 0.00 0.00 3.24
2218 7555 2.932614 CGGTGAGGTGATTGCTAAAGAG 59.067 50.000 0.00 0.00 0.00 2.85
2219 7556 2.354704 CCGGTGAGGTGATTGCTAAAGA 60.355 50.000 0.00 0.00 34.51 2.52
2220 7557 2.009774 CCGGTGAGGTGATTGCTAAAG 58.990 52.381 0.00 0.00 34.51 1.85
2221 7558 1.626321 TCCGGTGAGGTGATTGCTAAA 59.374 47.619 0.00 0.00 41.99 1.85
2222 7559 1.271856 TCCGGTGAGGTGATTGCTAA 58.728 50.000 0.00 0.00 41.99 3.09
2223 7560 1.207089 CTTCCGGTGAGGTGATTGCTA 59.793 52.381 0.00 0.00 41.99 3.49
2224 7561 0.036010 CTTCCGGTGAGGTGATTGCT 60.036 55.000 0.00 0.00 41.99 3.91
2225 7562 0.321653 ACTTCCGGTGAGGTGATTGC 60.322 55.000 0.00 0.00 41.99 3.56
2226 7563 3.543680 ATACTTCCGGTGAGGTGATTG 57.456 47.619 0.00 0.00 41.99 2.67
2227 7564 3.387050 GGTATACTTCCGGTGAGGTGATT 59.613 47.826 0.00 0.00 41.99 2.57
2228 7565 2.963782 GGTATACTTCCGGTGAGGTGAT 59.036 50.000 0.00 0.02 41.99 3.06
2229 7566 2.291735 TGGTATACTTCCGGTGAGGTGA 60.292 50.000 0.00 0.00 41.99 4.02
2230 7567 2.104967 TGGTATACTTCCGGTGAGGTG 58.895 52.381 0.00 0.00 41.99 4.00
2231 7568 2.105766 GTGGTATACTTCCGGTGAGGT 58.894 52.381 0.00 0.00 41.99 3.85
2232 7569 1.411612 GGTGGTATACTTCCGGTGAGG 59.588 57.143 0.00 0.00 42.97 3.86
2233 7570 2.104967 TGGTGGTATACTTCCGGTGAG 58.895 52.381 0.00 3.44 0.00 3.51
2234 7571 2.234896 TGGTGGTATACTTCCGGTGA 57.765 50.000 0.00 0.00 0.00 4.02
2235 7572 2.484770 CCATGGTGGTATACTTCCGGTG 60.485 54.545 2.57 0.00 31.35 4.94
2236 7573 1.766496 CCATGGTGGTATACTTCCGGT 59.234 52.381 2.57 0.00 31.35 5.28
2237 7574 1.542547 GCCATGGTGGTATACTTCCGG 60.543 57.143 14.67 0.00 40.46 5.14
2238 7575 1.416401 AGCCATGGTGGTATACTTCCG 59.584 52.381 14.67 0.00 40.46 4.30
2239 7576 3.214328 CAAGCCATGGTGGTATACTTCC 58.786 50.000 14.67 6.41 40.46 3.46
2240 7577 3.214328 CCAAGCCATGGTGGTATACTTC 58.786 50.000 14.67 0.00 44.85 3.01
2254 7591 1.355381 ACATGTCAGATTCCCAAGCCA 59.645 47.619 0.00 0.00 0.00 4.75
2329 7810 6.252233 TGGTCAGATACATCAATTTCCCAAA 58.748 36.000 0.00 0.00 0.00 3.28
2337 7818 6.322201 GGTCCAAAATGGTCAGATACATCAAT 59.678 38.462 0.00 0.00 39.03 2.57
2342 7823 4.536090 AGAGGTCCAAAATGGTCAGATACA 59.464 41.667 0.00 0.00 39.03 2.29
2354 7979 7.020827 AGATGATTACTTGAGAGGTCCAAAA 57.979 36.000 0.00 0.00 0.00 2.44
2384 8009 3.606687 CCTATTTCAGCGGGTACACTTT 58.393 45.455 0.00 0.00 0.00 2.66
2395 8020 2.426842 ACAAGGGAGCCTATTTCAGC 57.573 50.000 0.00 0.00 31.13 4.26
2406 8031 8.367156 TCCAGAAAAATCAAATTAACAAGGGAG 58.633 33.333 0.00 0.00 0.00 4.30
2413 8038 9.140286 GCTTAGGTCCAGAAAAATCAAATTAAC 57.860 33.333 0.00 0.00 0.00 2.01
2419 8044 5.596361 TGTTGCTTAGGTCCAGAAAAATCAA 59.404 36.000 0.00 0.00 0.00 2.57
2478 8103 5.288804 TGCTTCAAACTTGTTAGATTTGCC 58.711 37.500 0.00 0.00 34.09 4.52
2517 8142 5.549742 TCAGGGCAATCTTGAAATTGTTT 57.450 34.783 0.00 0.00 38.60 2.83
2526 8151 5.348986 CAATCTGAATTCAGGGCAATCTTG 58.651 41.667 30.33 18.51 43.91 3.02
2535 8160 1.202222 GCACGCCAATCTGAATTCAGG 60.202 52.381 30.33 18.88 43.91 3.86
2561 8186 3.272574 ACCATGCAGATTCCAGTGTAG 57.727 47.619 0.00 0.00 0.00 2.74
2657 8285 4.625607 AACTCACCCTTTAGAGAAGTGG 57.374 45.455 0.00 0.00 35.83 4.00
2673 8301 4.285863 ACCAAAACCAATCAGGAAACTCA 58.714 39.130 0.00 0.00 40.21 3.41
2750 8378 2.742428 ATCCATATGTGCTGGCAAGT 57.258 45.000 1.24 0.00 33.56 3.16
2797 8425 1.349259 CCAGTAAGCCGGTTCGAACG 61.349 60.000 21.34 15.88 0.00 3.95
2841 8469 2.093447 GGAGGTGTCTAACAGGGTGATG 60.093 54.545 0.00 0.00 0.00 3.07
2858 8486 7.432869 TGTTTCTGAAAATGTATTGTTGGAGG 58.567 34.615 4.09 0.00 0.00 4.30
2904 8532 4.419522 ACACAATATTTCAAGTCGTGGC 57.580 40.909 5.23 0.00 0.00 5.01
2946 8574 5.334414 GCAAATAGATTCTGGAATGTAGCCG 60.334 44.000 0.17 0.00 31.37 5.52
3044 8672 8.642432 TGAGTATAAGATTCTCTATGTTGTGGG 58.358 37.037 0.00 0.00 0.00 4.61
3058 8686 7.986085 AACTGTTGTTGCTGAGTATAAGATT 57.014 32.000 0.00 0.00 34.71 2.40
3096 8724 4.990426 GTGTTATTCTGCAAAAATGCTGGT 59.010 37.500 7.66 1.38 35.00 4.00
3247 8877 4.159557 AGATGCCCCAACTTTGTTATGTT 58.840 39.130 0.00 0.00 0.00 2.71
3378 9008 4.338879 CTCCCATGGAATCAACTTCAACT 58.661 43.478 15.22 0.00 35.41 3.16
3385 9052 3.933861 AGTACCTCCCATGGAATCAAC 57.066 47.619 15.22 5.86 0.00 3.18
3386 9053 3.714798 GGTAGTACCTCCCATGGAATCAA 59.285 47.826 15.22 0.00 34.73 2.57
3532 9214 5.122396 GCGAAGTGATGTCTGTAGGAATTTT 59.878 40.000 0.00 0.00 0.00 1.82
3796 15331 3.932822 TGTTGCCGATGTACATAAGTGT 58.067 40.909 8.71 0.00 42.39 3.55
3865 15400 2.072298 GAGATCGCCATGGATGTAAGC 58.928 52.381 18.40 0.00 0.00 3.09
3869 15404 0.316522 CTCGAGATCGCCATGGATGT 59.683 55.000 18.40 0.00 39.60 3.06
3888 15429 3.366781 GGTCAAATTCTTCCTTGCTGCTC 60.367 47.826 0.00 0.00 0.00 4.26
3939 15480 1.142688 AGAGCCCCACCACAAATCCT 61.143 55.000 0.00 0.00 0.00 3.24
4041 15582 6.015856 CCCACTTCACAACCACAAATACATAA 60.016 38.462 0.00 0.00 0.00 1.90
4192 15874 8.186821 AGATAGAGGTACAAACACGTATAACAC 58.813 37.037 0.00 0.00 0.00 3.32
4232 15924 7.783090 AAATGTATCAGAAGAGCTACACATG 57.217 36.000 0.00 0.00 0.00 3.21
4262 15954 4.970611 CGACAATAGTTCGACCATAGTGAG 59.029 45.833 5.49 0.00 0.00 3.51
4270 15962 7.485913 TCTTACATTTACGACAATAGTTCGACC 59.514 37.037 0.00 0.00 0.00 4.79
4323 16017 7.642082 TTACAGTCCAGAAGAATAGTAGGAC 57.358 40.000 0.00 0.00 44.43 3.85
4324 16018 9.931698 TTATTACAGTCCAGAAGAATAGTAGGA 57.068 33.333 0.00 0.00 0.00 2.94
4450 16405 4.729868 AGTTTTGCAGGGATTTCTACAGT 58.270 39.130 0.00 0.00 0.00 3.55
4501 16456 6.663093 AGTCAGAAAGTCAGAGAGTGTATCAT 59.337 38.462 0.00 0.00 0.00 2.45
4507 16462 4.942852 ACAAGTCAGAAAGTCAGAGAGTG 58.057 43.478 0.00 0.00 0.00 3.51
4525 16481 4.803088 CCAACACCAAACACATTGTACAAG 59.197 41.667 14.65 8.70 37.32 3.16
4526 16482 4.462834 TCCAACACCAAACACATTGTACAA 59.537 37.500 11.41 11.41 37.32 2.41
4527 16483 4.017126 TCCAACACCAAACACATTGTACA 58.983 39.130 0.00 0.00 37.32 2.90
4553 16553 4.096833 ACTTGAAACCTACGAAACAAACCC 59.903 41.667 0.00 0.00 0.00 4.11
4577 16577 6.362283 GCACACGTTTCAAGCTACAAATAAAT 59.638 34.615 0.00 0.00 0.00 1.40
4596 16596 0.238289 GGACATTTCCACTGCACACG 59.762 55.000 0.00 0.00 42.30 4.49
4632 16632 6.094719 TGCTGCTGATTGACATTAACATTTC 58.905 36.000 0.00 0.00 0.00 2.17
4670 16675 9.726438 ACATACACTTGCTTAAGTCTAAATCTT 57.274 29.630 4.02 0.00 0.00 2.40
4676 16681 6.354794 ACCACATACACTTGCTTAAGTCTA 57.645 37.500 4.02 0.00 0.00 2.59
4695 16700 4.487714 TCCCATCATTCAGAGTAACCAC 57.512 45.455 0.00 0.00 0.00 4.16
4730 16735 6.586463 TCTTGAATCAACTCGCTTACTTACAG 59.414 38.462 0.00 0.00 0.00 2.74
4731 16736 6.452242 TCTTGAATCAACTCGCTTACTTACA 58.548 36.000 0.00 0.00 0.00 2.41
4732 16737 6.807230 TCTCTTGAATCAACTCGCTTACTTAC 59.193 38.462 0.00 0.00 0.00 2.34
4733 16738 6.920817 TCTCTTGAATCAACTCGCTTACTTA 58.079 36.000 0.00 0.00 0.00 2.24
4734 16739 5.784177 TCTCTTGAATCAACTCGCTTACTT 58.216 37.500 0.00 0.00 0.00 2.24
4741 16751 7.301068 AGCTAATTTCTCTTGAATCAACTCG 57.699 36.000 0.00 0.00 31.56 4.18
4745 16755 8.862325 TGGTTAGCTAATTTCTCTTGAATCAA 57.138 30.769 9.88 0.00 31.56 2.57
4780 16853 3.626924 GAGGGCACGGTGTCACCT 61.627 66.667 19.82 16.38 35.66 4.00
4802 16875 1.518302 GAGAGGAGGAAACGGGAGC 59.482 63.158 0.00 0.00 0.00 4.70
4807 16880 0.029567 CGGATCGAGAGGAGGAAACG 59.970 60.000 0.00 0.00 0.00 3.60
4903 16976 4.680237 CACCACCTTGCCGCTCGA 62.680 66.667 0.00 0.00 0.00 4.04
4904 16977 4.680237 TCACCACCTTGCCGCTCG 62.680 66.667 0.00 0.00 0.00 5.03
4905 16978 3.050275 GTCACCACCTTGCCGCTC 61.050 66.667 0.00 0.00 0.00 5.03
4906 16979 1.836999 TATGTCACCACCTTGCCGCT 61.837 55.000 0.00 0.00 0.00 5.52
4909 16982 1.812571 CAAGTATGTCACCACCTTGCC 59.187 52.381 0.00 0.00 30.61 4.52
4918 16991 2.159099 TCGATGCCCTCAAGTATGTCAC 60.159 50.000 0.00 0.00 0.00 3.67
4921 16994 1.202580 GCTCGATGCCCTCAAGTATGT 60.203 52.381 0.00 0.00 35.15 2.29
4922 16995 1.202568 TGCTCGATGCCCTCAAGTATG 60.203 52.381 4.73 0.00 42.00 2.39
4933 17006 0.248377 GCTTTCCACATGCTCGATGC 60.248 55.000 0.00 0.00 43.25 3.91
4944 17017 2.483877 TGAATGACACGATGCTTTCCAC 59.516 45.455 0.00 0.00 0.00 4.02
4947 17020 3.189287 ACCTTGAATGACACGATGCTTTC 59.811 43.478 0.00 0.00 0.00 2.62
4982 17055 4.158025 TGATGAGGAGTAAAGTCGTTCTCC 59.842 45.833 0.00 0.00 44.61 3.71
4984 17057 4.767928 ACTGATGAGGAGTAAAGTCGTTCT 59.232 41.667 0.00 0.00 0.00 3.01
4985 17058 5.061920 ACTGATGAGGAGTAAAGTCGTTC 57.938 43.478 0.00 0.00 0.00 3.95
4986 17059 6.777213 ATACTGATGAGGAGTAAAGTCGTT 57.223 37.500 0.00 0.00 29.82 3.85
4987 17060 6.018098 CGTATACTGATGAGGAGTAAAGTCGT 60.018 42.308 0.56 0.00 29.82 4.34
4989 17062 6.016943 AGCGTATACTGATGAGGAGTAAAGTC 60.017 42.308 0.56 0.00 29.82 3.01
4990 17063 5.828859 AGCGTATACTGATGAGGAGTAAAGT 59.171 40.000 0.56 0.00 29.82 2.66
4991 17064 6.146216 CAGCGTATACTGATGAGGAGTAAAG 58.854 44.000 0.56 0.00 40.25 1.85
4994 17067 3.502595 GCAGCGTATACTGATGAGGAGTA 59.497 47.826 14.27 0.00 40.25 2.59
4995 17068 2.294791 GCAGCGTATACTGATGAGGAGT 59.705 50.000 14.27 0.00 40.25 3.85
4997 17070 2.294512 CTGCAGCGTATACTGATGAGGA 59.705 50.000 14.27 0.00 40.25 3.71
4998 17071 2.608998 CCTGCAGCGTATACTGATGAGG 60.609 54.545 8.66 13.05 40.25 3.86
5000 17073 1.269778 GCCTGCAGCGTATACTGATGA 60.270 52.381 8.66 2.84 40.25 2.92
5001 17074 1.143305 GCCTGCAGCGTATACTGATG 58.857 55.000 8.66 5.12 40.25 3.07
5002 17075 3.595691 GCCTGCAGCGTATACTGAT 57.404 52.632 8.66 0.00 40.25 2.90
5012 17085 1.451028 CCCAGTTCTAGCCTGCAGC 60.451 63.158 8.66 3.91 44.25 5.25
5013 17086 0.107945 GTCCCAGTTCTAGCCTGCAG 60.108 60.000 6.78 6.78 0.00 4.41
5014 17087 1.553690 GGTCCCAGTTCTAGCCTGCA 61.554 60.000 4.26 0.00 0.00 4.41
5015 17088 1.222113 GGTCCCAGTTCTAGCCTGC 59.778 63.158 4.26 0.00 0.00 4.85
5016 17089 0.539051 CAGGTCCCAGTTCTAGCCTG 59.461 60.000 0.00 0.00 37.71 4.85
5017 17090 0.618968 CCAGGTCCCAGTTCTAGCCT 60.619 60.000 0.00 0.00 0.00 4.58
5018 17091 0.617820 TCCAGGTCCCAGTTCTAGCC 60.618 60.000 0.00 0.00 0.00 3.93
5019 17092 0.827368 CTCCAGGTCCCAGTTCTAGC 59.173 60.000 0.00 0.00 0.00 3.42
5020 17093 2.291930 ACTCTCCAGGTCCCAGTTCTAG 60.292 54.545 0.00 0.00 0.00 2.43
5021 17094 1.717077 ACTCTCCAGGTCCCAGTTCTA 59.283 52.381 0.00 0.00 0.00 2.10
5022 17095 0.489567 ACTCTCCAGGTCCCAGTTCT 59.510 55.000 0.00 0.00 0.00 3.01
5023 17096 2.233305 TACTCTCCAGGTCCCAGTTC 57.767 55.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.