Multiple sequence alignment - TraesCS3D01G034500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G034500 chr3D 100.000 3089 0 0 1 3089 12709633 12712721 0.000000e+00 5705.0
1 TraesCS3D01G034500 chr3D 95.691 998 13 2 1 968 262688414 262687417 0.000000e+00 1578.0
2 TraesCS3D01G034500 chr3D 85.309 987 102 25 1 966 99367018 99366054 0.000000e+00 979.0
3 TraesCS3D01G034500 chr3D 87.424 827 74 12 1247 2051 12800906 12800088 0.000000e+00 924.0
4 TraesCS3D01G034500 chr3D 86.699 827 77 13 1247 2047 12806759 12805940 0.000000e+00 887.0
5 TraesCS3D01G034500 chr3D 86.571 834 66 20 1247 2051 12552498 12551682 0.000000e+00 878.0
6 TraesCS3D01G034500 chr3D 87.179 780 71 11 1247 2005 12635079 12635850 0.000000e+00 859.0
7 TraesCS3D01G034500 chr3D 85.818 825 80 15 1247 2050 12750203 12749395 0.000000e+00 841.0
8 TraesCS3D01G034500 chr3D 84.634 833 80 16 1247 2054 12725175 12725984 0.000000e+00 785.0
9 TraesCS3D01G034500 chr3D 86.468 739 69 14 1247 1958 12503998 12503264 0.000000e+00 782.0
10 TraesCS3D01G034500 chr3D 96.324 136 5 0 1113 1248 376802705 376802840 1.110000e-54 224.0
11 TraesCS3D01G034500 chr3D 88.462 104 10 2 1949 2050 12502001 12501898 1.160000e-24 124.0
12 TraesCS3D01G034500 chr3D 89.610 77 6 2 1949 2025 12748630 12748556 2.540000e-16 97.1
13 TraesCS3D01G034500 chr3D 100.000 29 0 0 2134 2162 12502623 12502595 2.000000e-03 54.7
14 TraesCS3D01G034500 chr5B 91.565 984 65 6 1 966 666616813 666617796 0.000000e+00 1341.0
15 TraesCS3D01G034500 chr5B 89.929 983 81 6 1 965 355960083 355961065 0.000000e+00 1251.0
16 TraesCS3D01G034500 chr5B 90.476 147 14 0 966 1112 414242022 414241876 8.740000e-46 195.0
17 TraesCS3D01G034500 chr1B 91.437 981 66 6 1 963 327731693 327730713 0.000000e+00 1330.0
18 TraesCS3D01G034500 chr7D 95.333 600 28 0 1 600 370132781 370132182 0.000000e+00 953.0
19 TraesCS3D01G034500 chr7D 94.366 426 21 3 542 965 370132210 370131786 0.000000e+00 651.0
20 TraesCS3D01G034500 chr7D 96.324 136 5 0 1113 1248 432064858 432064993 1.110000e-54 224.0
21 TraesCS3D01G034500 chr7D 96.296 135 5 0 1113 1247 418134109 418134243 4.010000e-54 222.0
22 TraesCS3D01G034500 chr7D 93.793 145 8 1 1104 1248 596952809 596952666 1.870000e-52 217.0
23 TraesCS3D01G034500 chr3A 85.890 893 87 16 1247 2115 24598802 24599679 0.000000e+00 915.0
24 TraesCS3D01G034500 chr3A 88.235 595 59 7 1247 1832 24607216 24607808 0.000000e+00 701.0
25 TraesCS3D01G034500 chr3A 79.369 412 57 11 2690 3077 24608915 24609322 6.570000e-67 265.0
26 TraesCS3D01G034500 chr5A 92.462 597 45 0 1 597 692672724 692673320 0.000000e+00 854.0
27 TraesCS3D01G034500 chr4B 92.333 600 46 0 1 600 251476264 251475665 0.000000e+00 854.0
28 TraesCS3D01G034500 chr2A 92.462 597 45 0 1 597 277165822 277166418 0.000000e+00 854.0
29 TraesCS3D01G034500 chr2A 91.089 303 27 0 663 965 109610507 109610205 7.970000e-111 411.0
30 TraesCS3D01G034500 chr2A 90.066 302 28 2 663 963 778382834 778383134 1.040000e-104 390.0
31 TraesCS3D01G034500 chr2A 95.000 140 7 0 1113 1252 521325897 521325758 1.440000e-53 220.0
32 TraesCS3D01G034500 chr2A 95.588 136 6 0 1113 1248 51389298 51389433 5.190000e-53 219.0
33 TraesCS3D01G034500 chr1D 98.118 425 8 0 542 966 426897793 426898217 0.000000e+00 741.0
34 TraesCS3D01G034500 chr6D 90.551 508 39 5 1 508 365270443 365269945 0.000000e+00 664.0
35 TraesCS3D01G034500 chr6D 89.266 354 31 6 616 965 194008000 194007650 1.320000e-118 436.0
36 TraesCS3D01G034500 chr6D 87.500 360 35 7 613 964 469784332 469784689 1.030000e-109 407.0
37 TraesCS3D01G034500 chr6D 90.728 151 14 0 966 1116 59083309 59083159 5.220000e-48 202.0
38 TraesCS3D01G034500 chr4D 94.426 305 17 0 663 967 65114601 65114297 1.300000e-128 470.0
39 TraesCS3D01G034500 chr3B 91.639 299 22 2 667 965 132612496 132612791 7.970000e-111 411.0
40 TraesCS3D01G034500 chr2B 95.000 140 7 0 1113 1252 57086021 57085882 1.440000e-53 220.0
41 TraesCS3D01G034500 chr2B 90.476 147 11 1 966 1112 411518210 411518353 1.130000e-44 191.0
42 TraesCS3D01G034500 chr2B 89.796 147 15 0 966 1112 57086241 57086095 4.070000e-44 189.0
43 TraesCS3D01G034500 chr5D 92.763 152 9 2 1113 1264 435932472 435932621 5.190000e-53 219.0
44 TraesCS3D01G034500 chr5D 89.933 149 13 1 966 1112 297963101 297962953 1.130000e-44 191.0
45 TraesCS3D01G034500 chr2D 93.243 148 9 1 1102 1249 42660934 42661080 1.870000e-52 217.0
46 TraesCS3D01G034500 chr2D 91.156 147 13 0 966 1112 345839055 345839201 1.880000e-47 200.0
47 TraesCS3D01G034500 chrUn 90.476 147 14 0 966 1112 84609415 84609269 8.740000e-46 195.0
48 TraesCS3D01G034500 chr7B 90.476 147 14 0 966 1112 23785313 23785459 8.740000e-46 195.0
49 TraesCS3D01G034500 chr7B 89.116 147 16 0 966 1112 593013283 593013429 1.890000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G034500 chr3D 12709633 12712721 3088 False 5705.000000 5705 100.000000 1 3089 1 chr3D.!!$F2 3088
1 TraesCS3D01G034500 chr3D 262687417 262688414 997 True 1578.000000 1578 95.691000 1 968 1 chr3D.!!$R5 967
2 TraesCS3D01G034500 chr3D 99366054 99367018 964 True 979.000000 979 85.309000 1 966 1 chr3D.!!$R4 965
3 TraesCS3D01G034500 chr3D 12800088 12800906 818 True 924.000000 924 87.424000 1247 2051 1 chr3D.!!$R2 804
4 TraesCS3D01G034500 chr3D 12805940 12806759 819 True 887.000000 887 86.699000 1247 2047 1 chr3D.!!$R3 800
5 TraesCS3D01G034500 chr3D 12551682 12552498 816 True 878.000000 878 86.571000 1247 2051 1 chr3D.!!$R1 804
6 TraesCS3D01G034500 chr3D 12635079 12635850 771 False 859.000000 859 87.179000 1247 2005 1 chr3D.!!$F1 758
7 TraesCS3D01G034500 chr3D 12725175 12725984 809 False 785.000000 785 84.634000 1247 2054 1 chr3D.!!$F3 807
8 TraesCS3D01G034500 chr3D 12748556 12750203 1647 True 469.050000 841 87.714000 1247 2050 2 chr3D.!!$R7 803
9 TraesCS3D01G034500 chr3D 12501898 12503998 2100 True 320.233333 782 91.643333 1247 2162 3 chr3D.!!$R6 915
10 TraesCS3D01G034500 chr5B 666616813 666617796 983 False 1341.000000 1341 91.565000 1 966 1 chr5B.!!$F2 965
11 TraesCS3D01G034500 chr5B 355960083 355961065 982 False 1251.000000 1251 89.929000 1 965 1 chr5B.!!$F1 964
12 TraesCS3D01G034500 chr1B 327730713 327731693 980 True 1330.000000 1330 91.437000 1 963 1 chr1B.!!$R1 962
13 TraesCS3D01G034500 chr7D 370131786 370132781 995 True 802.000000 953 94.849500 1 965 2 chr7D.!!$R2 964
14 TraesCS3D01G034500 chr3A 24598802 24599679 877 False 915.000000 915 85.890000 1247 2115 1 chr3A.!!$F1 868
15 TraesCS3D01G034500 chr3A 24607216 24609322 2106 False 483.000000 701 83.802000 1247 3077 2 chr3A.!!$F2 1830
16 TraesCS3D01G034500 chr5A 692672724 692673320 596 False 854.000000 854 92.462000 1 597 1 chr5A.!!$F1 596
17 TraesCS3D01G034500 chr4B 251475665 251476264 599 True 854.000000 854 92.333000 1 600 1 chr4B.!!$R1 599
18 TraesCS3D01G034500 chr2A 277165822 277166418 596 False 854.000000 854 92.462000 1 597 1 chr2A.!!$F2 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1111 0.11456 AGTGGGGGAGACGAGAAAGA 59.885 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 3439 0.033366 AAAGCAAACCGGGTGAATGC 59.967 50.0 19.47 19.47 37.28 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 1.705997 AAAGGTCCTGGTTCAGCCGT 61.706 55.000 0.00 0.00 41.21 5.68
236 237 4.286320 GCATCGGCCGACGGAGAT 62.286 66.667 33.75 17.98 44.45 2.75
973 1089 4.437772 ACTTAGTCTAACAAGACGGAGC 57.562 45.455 9.57 0.00 43.15 4.70
974 1090 3.119919 ACTTAGTCTAACAAGACGGAGCG 60.120 47.826 9.57 0.00 43.15 5.03
975 1091 0.526662 AGTCTAACAAGACGGAGCGG 59.473 55.000 0.18 0.00 43.15 5.52
976 1092 0.524862 GTCTAACAAGACGGAGCGGA 59.475 55.000 0.00 0.00 0.00 5.54
977 1093 0.809385 TCTAACAAGACGGAGCGGAG 59.191 55.000 0.00 0.00 0.00 4.63
978 1094 0.526662 CTAACAAGACGGAGCGGAGT 59.473 55.000 0.00 0.00 0.00 3.85
979 1095 0.242825 TAACAAGACGGAGCGGAGTG 59.757 55.000 0.00 0.00 0.00 3.51
980 1096 2.125912 CAAGACGGAGCGGAGTGG 60.126 66.667 0.00 0.00 0.00 4.00
981 1097 3.382832 AAGACGGAGCGGAGTGGG 61.383 66.667 0.00 0.00 0.00 4.61
986 1102 4.779733 GGAGCGGAGTGGGGGAGA 62.780 72.222 0.00 0.00 0.00 3.71
987 1103 3.462678 GAGCGGAGTGGGGGAGAC 61.463 72.222 0.00 0.00 0.00 3.36
990 1106 3.141488 CGGAGTGGGGGAGACGAG 61.141 72.222 0.00 0.00 0.00 4.18
991 1107 2.359404 GGAGTGGGGGAGACGAGA 59.641 66.667 0.00 0.00 0.00 4.04
992 1108 1.305046 GGAGTGGGGGAGACGAGAA 60.305 63.158 0.00 0.00 0.00 2.87
993 1109 0.903454 GGAGTGGGGGAGACGAGAAA 60.903 60.000 0.00 0.00 0.00 2.52
994 1110 0.533032 GAGTGGGGGAGACGAGAAAG 59.467 60.000 0.00 0.00 0.00 2.62
995 1111 0.114560 AGTGGGGGAGACGAGAAAGA 59.885 55.000 0.00 0.00 0.00 2.52
996 1112 0.533032 GTGGGGGAGACGAGAAAGAG 59.467 60.000 0.00 0.00 0.00 2.85
997 1113 0.614979 TGGGGGAGACGAGAAAGAGG 60.615 60.000 0.00 0.00 0.00 3.69
998 1114 0.324460 GGGGGAGACGAGAAAGAGGA 60.324 60.000 0.00 0.00 0.00 3.71
999 1115 1.107945 GGGGAGACGAGAAAGAGGAG 58.892 60.000 0.00 0.00 0.00 3.69
1000 1116 1.341187 GGGGAGACGAGAAAGAGGAGA 60.341 57.143 0.00 0.00 0.00 3.71
1001 1117 2.021457 GGGAGACGAGAAAGAGGAGAG 58.979 57.143 0.00 0.00 0.00 3.20
1002 1118 2.356330 GGGAGACGAGAAAGAGGAGAGA 60.356 54.545 0.00 0.00 0.00 3.10
1003 1119 3.551846 GGAGACGAGAAAGAGGAGAGAT 58.448 50.000 0.00 0.00 0.00 2.75
1004 1120 4.445162 GGGAGACGAGAAAGAGGAGAGATA 60.445 50.000 0.00 0.00 0.00 1.98
1005 1121 5.127491 GGAGACGAGAAAGAGGAGAGATAA 58.873 45.833 0.00 0.00 0.00 1.75
1006 1122 5.238650 GGAGACGAGAAAGAGGAGAGATAAG 59.761 48.000 0.00 0.00 0.00 1.73
1007 1123 5.130350 AGACGAGAAAGAGGAGAGATAAGG 58.870 45.833 0.00 0.00 0.00 2.69
1008 1124 4.862371 ACGAGAAAGAGGAGAGATAAGGT 58.138 43.478 0.00 0.00 0.00 3.50
1009 1125 4.642885 ACGAGAAAGAGGAGAGATAAGGTG 59.357 45.833 0.00 0.00 0.00 4.00
1010 1126 4.884744 CGAGAAAGAGGAGAGATAAGGTGA 59.115 45.833 0.00 0.00 0.00 4.02
1011 1127 5.008613 CGAGAAAGAGGAGAGATAAGGTGAG 59.991 48.000 0.00 0.00 0.00 3.51
1012 1128 5.208121 AGAAAGAGGAGAGATAAGGTGAGG 58.792 45.833 0.00 0.00 0.00 3.86
1013 1129 4.890499 AAGAGGAGAGATAAGGTGAGGA 57.110 45.455 0.00 0.00 0.00 3.71
1014 1130 4.453480 AGAGGAGAGATAAGGTGAGGAG 57.547 50.000 0.00 0.00 0.00 3.69
1015 1131 3.140144 AGAGGAGAGATAAGGTGAGGAGG 59.860 52.174 0.00 0.00 0.00 4.30
1016 1132 3.135279 AGGAGAGATAAGGTGAGGAGGA 58.865 50.000 0.00 0.00 0.00 3.71
1017 1133 3.140144 AGGAGAGATAAGGTGAGGAGGAG 59.860 52.174 0.00 0.00 0.00 3.69
1018 1134 3.117284 GGAGAGATAAGGTGAGGAGGAGT 60.117 52.174 0.00 0.00 0.00 3.85
1019 1135 3.888930 GAGAGATAAGGTGAGGAGGAGTG 59.111 52.174 0.00 0.00 0.00 3.51
1020 1136 2.962421 GAGATAAGGTGAGGAGGAGTGG 59.038 54.545 0.00 0.00 0.00 4.00
1021 1137 2.043227 GATAAGGTGAGGAGGAGTGGG 58.957 57.143 0.00 0.00 0.00 4.61
1022 1138 0.042731 TAAGGTGAGGAGGAGTGGGG 59.957 60.000 0.00 0.00 0.00 4.96
1023 1139 3.403558 GGTGAGGAGGAGTGGGGC 61.404 72.222 0.00 0.00 0.00 5.80
1024 1140 3.775654 GTGAGGAGGAGTGGGGCG 61.776 72.222 0.00 0.00 0.00 6.13
1025 1141 4.316823 TGAGGAGGAGTGGGGCGT 62.317 66.667 0.00 0.00 0.00 5.68
1026 1142 3.775654 GAGGAGGAGTGGGGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
1027 1143 4.316823 AGGAGGAGTGGGGCGTGA 62.317 66.667 0.00 0.00 0.00 4.35
1028 1144 3.083997 GGAGGAGTGGGGCGTGAT 61.084 66.667 0.00 0.00 0.00 3.06
1029 1145 2.187946 GAGGAGTGGGGCGTGATG 59.812 66.667 0.00 0.00 0.00 3.07
1030 1146 3.391665 GAGGAGTGGGGCGTGATGG 62.392 68.421 0.00 0.00 0.00 3.51
1031 1147 3.717294 GGAGTGGGGCGTGATGGT 61.717 66.667 0.00 0.00 0.00 3.55
1032 1148 2.436646 GAGTGGGGCGTGATGGTG 60.437 66.667 0.00 0.00 0.00 4.17
1033 1149 3.976701 GAGTGGGGCGTGATGGTGG 62.977 68.421 0.00 0.00 0.00 4.61
1034 1150 4.344865 GTGGGGCGTGATGGTGGT 62.345 66.667 0.00 0.00 0.00 4.16
1035 1151 2.608059 TGGGGCGTGATGGTGGTA 60.608 61.111 0.00 0.00 0.00 3.25
1036 1152 2.189521 GGGGCGTGATGGTGGTAG 59.810 66.667 0.00 0.00 0.00 3.18
1037 1153 2.189521 GGGCGTGATGGTGGTAGG 59.810 66.667 0.00 0.00 0.00 3.18
1038 1154 2.666098 GGGCGTGATGGTGGTAGGT 61.666 63.158 0.00 0.00 0.00 3.08
1039 1155 1.332144 GGGCGTGATGGTGGTAGGTA 61.332 60.000 0.00 0.00 0.00 3.08
1040 1156 0.104304 GGCGTGATGGTGGTAGGTAG 59.896 60.000 0.00 0.00 0.00 3.18
1041 1157 0.822164 GCGTGATGGTGGTAGGTAGT 59.178 55.000 0.00 0.00 0.00 2.73
1042 1158 1.202382 GCGTGATGGTGGTAGGTAGTC 60.202 57.143 0.00 0.00 0.00 2.59
1043 1159 1.065102 CGTGATGGTGGTAGGTAGTCG 59.935 57.143 0.00 0.00 0.00 4.18
1044 1160 2.372264 GTGATGGTGGTAGGTAGTCGA 58.628 52.381 0.00 0.00 0.00 4.20
1045 1161 2.756760 GTGATGGTGGTAGGTAGTCGAA 59.243 50.000 0.00 0.00 0.00 3.71
1046 1162 2.756760 TGATGGTGGTAGGTAGTCGAAC 59.243 50.000 0.00 0.00 0.00 3.95
1047 1163 2.592102 TGGTGGTAGGTAGTCGAACT 57.408 50.000 0.00 0.00 0.00 3.01
1048 1164 2.165167 TGGTGGTAGGTAGTCGAACTG 58.835 52.381 0.00 0.00 0.00 3.16
1049 1165 2.224843 TGGTGGTAGGTAGTCGAACTGA 60.225 50.000 0.00 0.00 0.00 3.41
1050 1166 2.422832 GGTGGTAGGTAGTCGAACTGAG 59.577 54.545 0.00 0.00 0.00 3.35
1051 1167 2.089980 TGGTAGGTAGTCGAACTGAGC 58.910 52.381 0.00 0.00 0.00 4.26
1052 1168 1.063764 GGTAGGTAGTCGAACTGAGCG 59.936 57.143 0.00 0.00 0.00 5.03
1053 1169 1.063764 GTAGGTAGTCGAACTGAGCGG 59.936 57.143 0.00 0.00 0.00 5.52
1054 1170 0.322277 AGGTAGTCGAACTGAGCGGA 60.322 55.000 0.00 0.00 0.00 5.54
1055 1171 0.099082 GGTAGTCGAACTGAGCGGAG 59.901 60.000 0.00 0.00 0.00 4.63
1056 1172 0.099082 GTAGTCGAACTGAGCGGAGG 59.901 60.000 0.00 0.00 0.00 4.30
1057 1173 1.654954 TAGTCGAACTGAGCGGAGGC 61.655 60.000 0.00 0.00 40.37 4.70
1058 1174 2.989253 TCGAACTGAGCGGAGGCA 60.989 61.111 0.00 0.00 43.41 4.75
1059 1175 2.185350 CGAACTGAGCGGAGGCAT 59.815 61.111 0.00 0.00 43.41 4.40
1060 1176 2.169789 CGAACTGAGCGGAGGCATG 61.170 63.158 0.00 0.00 43.41 4.06
1061 1177 1.817099 GAACTGAGCGGAGGCATGG 60.817 63.158 0.00 0.00 43.41 3.66
1062 1178 3.984193 AACTGAGCGGAGGCATGGC 62.984 63.158 12.14 12.14 43.41 4.40
1065 1181 4.615815 GAGCGGAGGCATGGCGAT 62.616 66.667 14.30 0.00 43.41 4.58
1066 1182 4.923942 AGCGGAGGCATGGCGATG 62.924 66.667 14.30 4.04 43.41 3.84
1068 1184 4.240103 CGGAGGCATGGCGATGGA 62.240 66.667 14.30 0.00 0.00 3.41
1069 1185 2.592861 GGAGGCATGGCGATGGAC 60.593 66.667 14.30 2.79 0.00 4.02
1070 1186 2.190313 GAGGCATGGCGATGGACA 59.810 61.111 14.30 0.00 34.03 4.02
1071 1187 1.451927 GAGGCATGGCGATGGACAA 60.452 57.895 14.30 0.00 32.52 3.18
1072 1188 1.718757 GAGGCATGGCGATGGACAAC 61.719 60.000 14.30 0.00 32.52 3.32
1073 1189 2.045708 GGCATGGCGATGGACAACA 61.046 57.895 10.93 0.00 32.52 3.33
1074 1190 1.137404 GCATGGCGATGGACAACAC 59.863 57.895 10.93 0.00 32.52 3.32
1075 1191 1.802636 CATGGCGATGGACAACACC 59.197 57.895 0.00 0.00 32.52 4.16
1076 1192 1.745115 ATGGCGATGGACAACACCG 60.745 57.895 0.00 0.00 32.52 4.94
1077 1193 3.124921 GGCGATGGACAACACCGG 61.125 66.667 0.00 0.00 0.00 5.28
1078 1194 3.799755 GCGATGGACAACACCGGC 61.800 66.667 0.00 0.00 0.00 6.13
1079 1195 2.358125 CGATGGACAACACCGGCA 60.358 61.111 0.00 0.00 0.00 5.69
1080 1196 2.390599 CGATGGACAACACCGGCAG 61.391 63.158 0.00 0.00 0.00 4.85
1081 1197 2.672996 ATGGACAACACCGGCAGC 60.673 61.111 0.00 0.00 0.00 5.25
1100 1216 4.002797 GCGACCAGGCCAGATTTT 57.997 55.556 5.01 0.00 0.00 1.82
1101 1217 2.267045 GCGACCAGGCCAGATTTTT 58.733 52.632 5.01 0.00 0.00 1.94
1102 1218 0.171231 GCGACCAGGCCAGATTTTTC 59.829 55.000 5.01 0.00 0.00 2.29
1103 1219 0.811281 CGACCAGGCCAGATTTTTCC 59.189 55.000 5.01 0.00 0.00 3.13
1104 1220 1.886222 CGACCAGGCCAGATTTTTCCA 60.886 52.381 5.01 0.00 0.00 3.53
1105 1221 2.247358 GACCAGGCCAGATTTTTCCAA 58.753 47.619 5.01 0.00 0.00 3.53
1106 1222 2.632512 GACCAGGCCAGATTTTTCCAAA 59.367 45.455 5.01 0.00 0.00 3.28
1107 1223 2.634453 ACCAGGCCAGATTTTTCCAAAG 59.366 45.455 5.01 0.00 0.00 2.77
1108 1224 2.027837 CCAGGCCAGATTTTTCCAAAGG 60.028 50.000 5.01 0.00 0.00 3.11
1109 1225 1.625315 AGGCCAGATTTTTCCAAAGGC 59.375 47.619 5.01 0.00 39.86 4.35
1110 1226 1.625315 GGCCAGATTTTTCCAAAGGCT 59.375 47.619 0.00 0.00 40.40 4.58
1111 1227 2.038952 GGCCAGATTTTTCCAAAGGCTT 59.961 45.455 0.00 0.00 40.40 4.35
1112 1228 3.069289 GCCAGATTTTTCCAAAGGCTTG 58.931 45.455 0.00 0.00 37.67 4.01
1113 1229 3.244181 GCCAGATTTTTCCAAAGGCTTGA 60.244 43.478 0.00 0.00 37.67 3.02
1114 1230 4.563061 CCAGATTTTTCCAAAGGCTTGAG 58.437 43.478 0.00 0.00 34.14 3.02
1115 1231 4.281688 CCAGATTTTTCCAAAGGCTTGAGA 59.718 41.667 0.00 0.00 34.14 3.27
1116 1232 5.467705 CAGATTTTTCCAAAGGCTTGAGAG 58.532 41.667 0.00 0.00 34.14 3.20
1117 1233 5.242393 CAGATTTTTCCAAAGGCTTGAGAGA 59.758 40.000 0.00 0.00 34.14 3.10
1118 1234 5.476254 AGATTTTTCCAAAGGCTTGAGAGAG 59.524 40.000 0.00 0.00 34.14 3.20
1119 1235 2.867109 TTCCAAAGGCTTGAGAGAGG 57.133 50.000 0.00 0.00 34.14 3.69
1120 1236 1.734655 TCCAAAGGCTTGAGAGAGGT 58.265 50.000 0.00 0.00 34.14 3.85
1121 1237 1.349026 TCCAAAGGCTTGAGAGAGGTG 59.651 52.381 0.00 0.00 34.14 4.00
1122 1238 1.163554 CAAAGGCTTGAGAGAGGTGC 58.836 55.000 0.00 0.00 34.14 5.01
1123 1239 0.321122 AAAGGCTTGAGAGAGGTGCG 60.321 55.000 0.00 0.00 0.00 5.34
1124 1240 2.125350 GGCTTGAGAGAGGTGCGG 60.125 66.667 0.00 0.00 0.00 5.69
1125 1241 2.125350 GCTTGAGAGAGGTGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
1126 1242 2.948720 GCTTGAGAGAGGTGCGGGT 61.949 63.158 0.00 0.00 0.00 5.28
1127 1243 1.605058 GCTTGAGAGAGGTGCGGGTA 61.605 60.000 0.00 0.00 0.00 3.69
1128 1244 1.115467 CTTGAGAGAGGTGCGGGTAT 58.885 55.000 0.00 0.00 0.00 2.73
1129 1245 1.067821 CTTGAGAGAGGTGCGGGTATC 59.932 57.143 0.00 0.00 0.00 2.24
1130 1246 0.259065 TGAGAGAGGTGCGGGTATCT 59.741 55.000 0.00 0.00 0.00 1.98
1131 1247 1.342076 TGAGAGAGGTGCGGGTATCTT 60.342 52.381 0.00 0.00 0.00 2.40
1132 1248 1.757699 GAGAGAGGTGCGGGTATCTTT 59.242 52.381 0.00 0.00 0.00 2.52
1133 1249 2.168728 GAGAGAGGTGCGGGTATCTTTT 59.831 50.000 0.00 0.00 0.00 2.27
1134 1250 2.572104 AGAGAGGTGCGGGTATCTTTTT 59.428 45.455 0.00 0.00 0.00 1.94
1135 1251 2.678336 GAGAGGTGCGGGTATCTTTTTG 59.322 50.000 0.00 0.00 0.00 2.44
1136 1252 1.132453 GAGGTGCGGGTATCTTTTTGC 59.868 52.381 0.00 0.00 0.00 3.68
1137 1253 0.885196 GGTGCGGGTATCTTTTTGCA 59.115 50.000 0.00 0.00 0.00 4.08
1138 1254 1.271102 GGTGCGGGTATCTTTTTGCAA 59.729 47.619 0.00 0.00 33.67 4.08
1139 1255 2.288518 GGTGCGGGTATCTTTTTGCAAA 60.289 45.455 8.05 8.05 33.67 3.68
1140 1256 3.385577 GTGCGGGTATCTTTTTGCAAAA 58.614 40.909 20.46 20.46 33.67 2.44
1141 1257 3.993736 GTGCGGGTATCTTTTTGCAAAAT 59.006 39.130 24.39 12.94 33.67 1.82
1142 1258 4.450757 GTGCGGGTATCTTTTTGCAAAATT 59.549 37.500 24.39 14.72 33.67 1.82
1143 1259 4.450419 TGCGGGTATCTTTTTGCAAAATTG 59.550 37.500 24.39 19.07 0.00 2.32
1144 1260 4.450757 GCGGGTATCTTTTTGCAAAATTGT 59.549 37.500 24.39 14.99 0.00 2.71
1145 1261 5.389411 GCGGGTATCTTTTTGCAAAATTGTC 60.389 40.000 24.39 13.66 0.00 3.18
1146 1262 5.694006 CGGGTATCTTTTTGCAAAATTGTCA 59.306 36.000 24.39 9.07 0.00 3.58
1147 1263 6.368516 CGGGTATCTTTTTGCAAAATTGTCAT 59.631 34.615 24.39 13.84 0.00 3.06
1148 1264 7.543868 CGGGTATCTTTTTGCAAAATTGTCATA 59.456 33.333 24.39 12.99 0.00 2.15
1149 1265 8.872845 GGGTATCTTTTTGCAAAATTGTCATAG 58.127 33.333 24.39 16.41 0.00 2.23
1150 1266 9.423061 GGTATCTTTTTGCAAAATTGTCATAGT 57.577 29.630 24.39 10.32 0.00 2.12
1165 1281 9.886132 AATTGTCATAGTTTACTTTCTATCCGT 57.114 29.630 0.00 0.00 0.00 4.69
1166 1282 8.922058 TTGTCATAGTTTACTTTCTATCCGTC 57.078 34.615 0.00 0.00 0.00 4.79
1167 1283 8.058667 TGTCATAGTTTACTTTCTATCCGTCA 57.941 34.615 0.00 0.00 0.00 4.35
1168 1284 8.188799 TGTCATAGTTTACTTTCTATCCGTCAG 58.811 37.037 0.00 0.00 0.00 3.51
1169 1285 8.404000 GTCATAGTTTACTTTCTATCCGTCAGA 58.596 37.037 0.00 0.00 0.00 3.27
1170 1286 9.132923 TCATAGTTTACTTTCTATCCGTCAGAT 57.867 33.333 0.00 0.00 39.15 2.90
1179 1295 9.521841 ACTTTCTATCCGTCAGATATAGATCAA 57.478 33.333 0.00 0.00 36.84 2.57
1182 1298 7.975750 TCTATCCGTCAGATATAGATCAAACG 58.024 38.462 14.13 14.13 39.79 3.60
1184 1300 5.122512 CCGTCAGATATAGATCAAACGGT 57.877 43.478 24.24 0.00 46.67 4.83
1185 1301 5.154932 CCGTCAGATATAGATCAAACGGTC 58.845 45.833 24.24 1.25 46.67 4.79
1186 1302 5.048643 CCGTCAGATATAGATCAAACGGTCT 60.049 44.000 24.24 0.00 46.67 3.85
1187 1303 6.148976 CCGTCAGATATAGATCAAACGGTCTA 59.851 42.308 24.24 0.00 46.67 2.59
1188 1304 7.148222 CCGTCAGATATAGATCAAACGGTCTAT 60.148 40.741 24.24 1.22 46.67 1.98
1189 1305 8.880750 CGTCAGATATAGATCAAACGGTCTATA 58.119 37.037 13.56 5.22 41.56 1.31
1194 1310 9.803315 GATATAGATCAAACGGTCTATATTGCA 57.197 33.333 13.75 0.00 44.58 4.08
1195 1311 9.809096 ATATAGATCAAACGGTCTATATTGCAG 57.191 33.333 8.73 0.00 43.21 4.41
1196 1312 5.300752 AGATCAAACGGTCTATATTGCAGG 58.699 41.667 0.00 0.00 0.00 4.85
1197 1313 4.746535 TCAAACGGTCTATATTGCAGGA 57.253 40.909 0.00 0.00 0.00 3.86
1198 1314 5.290493 TCAAACGGTCTATATTGCAGGAT 57.710 39.130 0.00 0.00 0.00 3.24
1199 1315 5.056480 TCAAACGGTCTATATTGCAGGATG 58.944 41.667 0.00 0.00 40.87 3.51
1200 1316 3.685139 ACGGTCTATATTGCAGGATGG 57.315 47.619 0.00 0.00 35.86 3.51
1201 1317 2.289694 ACGGTCTATATTGCAGGATGGC 60.290 50.000 0.00 0.00 35.86 4.40
1202 1318 2.289631 CGGTCTATATTGCAGGATGGCA 60.290 50.000 0.00 0.00 43.19 4.92
1203 1319 3.341823 GGTCTATATTGCAGGATGGCAG 58.658 50.000 0.00 0.00 45.88 4.85
1204 1320 3.341823 GTCTATATTGCAGGATGGCAGG 58.658 50.000 0.00 0.00 45.88 4.85
1205 1321 2.089980 CTATATTGCAGGATGGCAGGC 58.910 52.381 0.00 0.00 45.88 4.85
1206 1322 0.186630 ATATTGCAGGATGGCAGGCA 59.813 50.000 0.00 0.00 45.88 4.75
1207 1323 0.752743 TATTGCAGGATGGCAGGCAC 60.753 55.000 0.00 0.00 45.88 5.01
1208 1324 2.791613 ATTGCAGGATGGCAGGCACA 62.792 55.000 0.00 0.00 45.88 4.57
1209 1325 3.446570 GCAGGATGGCAGGCACAC 61.447 66.667 0.00 0.00 35.86 3.82
1210 1326 2.753043 CAGGATGGCAGGCACACC 60.753 66.667 12.37 12.37 0.00 4.16
1211 1327 3.259314 AGGATGGCAGGCACACCA 61.259 61.111 19.51 0.00 41.01 4.17
1214 1330 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
1215 1331 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
1216 1332 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
1217 1333 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
1218 1334 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
1219 1335 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
1220 1336 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
1221 1337 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
1222 1338 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
1223 1339 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
1224 1340 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
1225 1341 1.733912 CACACCATCATCACCAACTCG 59.266 52.381 0.00 0.00 0.00 4.18
1226 1342 1.339055 ACACCATCATCACCAACTCGG 60.339 52.381 0.00 0.00 42.50 4.63
1242 1358 7.988904 CCAACTCGGTCTTTTATAAGAGTAG 57.011 40.000 3.17 0.00 40.95 2.57
1243 1359 7.769220 CCAACTCGGTCTTTTATAAGAGTAGA 58.231 38.462 3.17 1.80 40.95 2.59
1244 1360 7.916450 CCAACTCGGTCTTTTATAAGAGTAGAG 59.084 40.741 15.90 15.90 40.95 2.43
1245 1361 8.675504 CAACTCGGTCTTTTATAAGAGTAGAGA 58.324 37.037 20.32 10.10 40.95 3.10
1346 1469 2.418368 TTCTGGTGAAATCCCATCGG 57.582 50.000 0.00 0.00 0.00 4.18
1349 1472 1.077068 GGTGAAATCCCATCGGGCA 60.077 57.895 0.00 0.00 43.94 5.36
1378 1501 4.779993 TCTGACATCTCTGAGCTACCTA 57.220 45.455 0.00 0.00 0.00 3.08
1453 1576 0.912486 CCCTCAATTCGGAGAACCCT 59.088 55.000 0.00 0.00 45.90 4.34
1537 1660 5.298383 GGAAATGATCCTTCCATCCATGGG 61.298 50.000 13.02 0.00 45.50 4.00
1615 1738 1.143329 TGGGATTTGTGGTGGGGCTA 61.143 55.000 0.00 0.00 0.00 3.93
1675 1798 5.018809 TGGAGAATTGCTTATTTCTGGCTT 58.981 37.500 0.00 0.00 0.00 4.35
1691 1814 2.492881 TGGCTTTTCGACGAGGTGTATA 59.507 45.455 0.00 0.00 0.00 1.47
1695 1818 4.085721 GCTTTTCGACGAGGTGTATAATCG 60.086 45.833 0.00 0.00 42.04 3.34
1696 1819 3.614159 TTCGACGAGGTGTATAATCGG 57.386 47.619 0.00 0.00 40.67 4.18
1710 1833 8.308931 GGTGTATAATCGGGTCTATGTATTTGA 58.691 37.037 0.00 0.00 0.00 2.69
1711 1834 9.701098 GTGTATAATCGGGTCTATGTATTTGAA 57.299 33.333 0.00 0.00 0.00 2.69
1748 1871 5.277974 GCAAGCTTCACAAAGAACACAGATA 60.278 40.000 0.00 0.00 34.14 1.98
1832 2086 5.110814 CTGGAATATTAACCAGGGTGTGA 57.889 43.478 13.19 0.00 46.76 3.58
1833 2087 5.110814 TGGAATATTAACCAGGGTGTGAG 57.889 43.478 0.00 0.00 0.00 3.51
1834 2088 4.080015 TGGAATATTAACCAGGGTGTGAGG 60.080 45.833 0.00 0.00 0.00 3.86
1835 2089 4.079958 GGAATATTAACCAGGGTGTGAGGT 60.080 45.833 0.00 0.00 37.20 3.85
1836 2090 2.879103 ATTAACCAGGGTGTGAGGTG 57.121 50.000 0.00 0.00 35.42 4.00
1837 2091 1.513858 TTAACCAGGGTGTGAGGTGT 58.486 50.000 0.00 0.00 35.42 4.16
1838 2092 2.402182 TAACCAGGGTGTGAGGTGTA 57.598 50.000 0.00 0.00 35.42 2.90
1868 2123 7.677454 TCTTCAGCAGCATATGTTATATTGG 57.323 36.000 4.29 0.00 0.00 3.16
1871 2126 4.703575 CAGCAGCATATGTTATATTGGGCT 59.296 41.667 4.29 0.00 0.00 5.19
1884 2139 2.738587 TTGGGCTCCTTGTTTGTACA 57.261 45.000 0.00 0.00 0.00 2.90
1886 2141 3.237268 TGGGCTCCTTGTTTGTACATT 57.763 42.857 0.00 0.00 33.44 2.71
1941 2248 4.868171 TCACTATTGTCGAACTATTGTGGC 59.132 41.667 16.07 0.00 37.53 5.01
1976 2283 8.488651 ACTTCAGTATTGTTTAGTTATTCCGG 57.511 34.615 0.00 0.00 0.00 5.14
2047 2644 9.927668 TCTTTCCCTGAATAATTTGAACATTTC 57.072 29.630 0.00 0.00 0.00 2.17
2049 2646 9.709495 TTTCCCTGAATAATTTGAACATTTCTG 57.291 29.630 0.00 0.00 0.00 3.02
2050 2647 7.322664 TCCCTGAATAATTTGAACATTTCTGC 58.677 34.615 0.00 0.00 0.00 4.26
2051 2648 6.536224 CCCTGAATAATTTGAACATTTCTGCC 59.464 38.462 0.00 0.00 0.00 4.85
2052 2649 7.325694 CCTGAATAATTTGAACATTTCTGCCT 58.674 34.615 0.00 0.00 0.00 4.75
2055 2652 6.855763 ATAATTTGAACATTTCTGCCTGGA 57.144 33.333 0.00 0.00 0.00 3.86
2056 2653 4.525912 ATTTGAACATTTCTGCCTGGAC 57.474 40.909 0.00 0.00 0.00 4.02
2070 2732 2.977914 CCTGGACAGGTTGTAGACATG 58.022 52.381 10.22 0.00 45.24 3.21
2076 2738 0.391661 AGGTTGTAGACATGCCTGCG 60.392 55.000 0.00 0.00 32.76 5.18
2116 2778 3.740631 TGTAGCTATGCTCTGTGATGG 57.259 47.619 0.00 0.00 40.44 3.51
2118 2780 3.452264 TGTAGCTATGCTCTGTGATGGTT 59.548 43.478 0.00 0.00 40.44 3.67
2120 2782 3.276857 AGCTATGCTCTGTGATGGTTTG 58.723 45.455 0.00 0.00 30.62 2.93
2122 2784 4.080919 AGCTATGCTCTGTGATGGTTTGTA 60.081 41.667 0.00 0.00 30.62 2.41
2124 2786 5.991606 GCTATGCTCTGTGATGGTTTGTATA 59.008 40.000 0.00 0.00 0.00 1.47
2127 2789 4.941263 TGCTCTGTGATGGTTTGTATAACC 59.059 41.667 0.00 0.00 40.67 2.85
2128 2790 4.034048 GCTCTGTGATGGTTTGTATAACCG 59.966 45.833 0.00 0.00 43.15 4.44
2129 2791 5.408880 TCTGTGATGGTTTGTATAACCGA 57.591 39.130 0.00 0.00 43.15 4.69
2130 2792 5.416083 TCTGTGATGGTTTGTATAACCGAG 58.584 41.667 0.00 0.00 43.15 4.63
2162 2868 0.182537 TCTGGGTTGGACAGTGGTTG 59.817 55.000 0.00 0.00 37.25 3.77
2163 2869 0.106719 CTGGGTTGGACAGTGGTTGT 60.107 55.000 0.00 0.00 44.55 3.32
2164 2870 1.142060 CTGGGTTGGACAGTGGTTGTA 59.858 52.381 0.00 0.00 41.05 2.41
2172 2942 3.335579 GGACAGTGGTTGTACAATCCTC 58.664 50.000 16.16 15.78 40.63 3.71
2177 2947 4.452455 CAGTGGTTGTACAATCCTCAAGTC 59.548 45.833 16.16 0.00 0.00 3.01
2190 2960 9.482627 ACAATCCTCAAGTCTTAATATCGATTC 57.517 33.333 1.71 0.00 0.00 2.52
2192 2962 6.678878 TCCTCAAGTCTTAATATCGATTCGG 58.321 40.000 1.71 0.00 0.00 4.30
2215 3016 2.159653 GCAAGCGTATTTGGTCACTCTG 60.160 50.000 0.00 0.00 0.00 3.35
2216 3017 3.325870 CAAGCGTATTTGGTCACTCTGA 58.674 45.455 0.00 0.00 0.00 3.27
2217 3018 3.678056 AGCGTATTTGGTCACTCTGAA 57.322 42.857 0.00 0.00 0.00 3.02
2218 3019 4.002906 AGCGTATTTGGTCACTCTGAAA 57.997 40.909 0.00 0.00 0.00 2.69
2228 3029 5.240891 TGGTCACTCTGAAATCTGAATGAC 58.759 41.667 17.93 17.93 44.60 3.06
2289 3091 5.250774 TGGAAGAGGAATTAACTAACCAGCT 59.749 40.000 0.00 0.00 0.00 4.24
2296 3122 1.559368 TAACTAACCAGCTACGGCCA 58.441 50.000 2.24 0.00 39.73 5.36
2298 3124 1.153429 CTAACCAGCTACGGCCACC 60.153 63.158 2.24 0.00 39.73 4.61
2366 3193 2.286523 CGGGAAGCTGACAGGGTCT 61.287 63.158 4.26 0.00 33.15 3.85
2367 3194 1.298014 GGGAAGCTGACAGGGTCTG 59.702 63.158 4.26 0.00 37.52 3.51
2453 3304 4.179579 GCCGCCATCGCCTTTGTC 62.180 66.667 0.00 0.00 0.00 3.18
2454 3305 3.864686 CCGCCATCGCCTTTGTCG 61.865 66.667 0.00 0.00 0.00 4.35
2455 3306 4.520846 CGCCATCGCCTTTGTCGC 62.521 66.667 0.00 0.00 0.00 5.19
2456 3307 4.179579 GCCATCGCCTTTGTCGCC 62.180 66.667 0.00 0.00 0.00 5.54
2492 3362 2.203070 GCCATCGCCGATCCAGTT 60.203 61.111 0.00 0.00 0.00 3.16
2494 3364 1.222115 GCCATCGCCGATCCAGTTAC 61.222 60.000 0.00 0.00 0.00 2.50
2497 3367 2.083835 ATCGCCGATCCAGTTACCCG 62.084 60.000 0.00 0.00 0.00 5.28
2498 3368 2.588034 GCCGATCCAGTTACCCGC 60.588 66.667 0.00 0.00 0.00 6.13
2512 3382 3.550431 CCGCCGGGACTCCATCAT 61.550 66.667 2.18 0.00 34.06 2.45
2513 3383 2.207229 CCGCCGGGACTCCATCATA 61.207 63.158 2.18 0.00 34.06 2.15
2514 3384 1.745890 CGCCGGGACTCCATCATAA 59.254 57.895 2.18 0.00 0.00 1.90
2515 3385 0.321671 CGCCGGGACTCCATCATAAT 59.678 55.000 2.18 0.00 0.00 1.28
2518 3388 1.673033 CCGGGACTCCATCATAATCGC 60.673 57.143 0.00 0.00 0.00 4.58
2519 3389 1.000843 CGGGACTCCATCATAATCGCA 59.999 52.381 0.00 0.00 0.00 5.10
2553 3435 2.249309 CAGTTTGGCGTCTGCGTG 59.751 61.111 0.00 0.00 44.10 5.34
2555 3437 4.683334 GTTTGGCGTCTGCGTGGC 62.683 66.667 0.00 0.00 44.10 5.01
2572 3454 2.566010 CCGCATTCACCCGGTTTG 59.434 61.111 0.00 0.00 39.67 2.93
2575 3457 1.665442 GCATTCACCCGGTTTGCTT 59.335 52.632 0.00 0.00 0.00 3.91
2576 3458 0.033366 GCATTCACCCGGTTTGCTTT 59.967 50.000 0.00 0.00 0.00 3.51
2577 3459 1.271102 GCATTCACCCGGTTTGCTTTA 59.729 47.619 0.00 0.00 0.00 1.85
2578 3460 2.671070 GCATTCACCCGGTTTGCTTTAG 60.671 50.000 0.00 0.00 0.00 1.85
2605 3504 8.419076 TTTCCTGTTTGCTTTAGTTTTTCATC 57.581 30.769 0.00 0.00 0.00 2.92
2606 3505 7.106439 TCCTGTTTGCTTTAGTTTTTCATCA 57.894 32.000 0.00 0.00 0.00 3.07
2607 3506 7.551585 TCCTGTTTGCTTTAGTTTTTCATCAA 58.448 30.769 0.00 0.00 0.00 2.57
2608 3507 7.706179 TCCTGTTTGCTTTAGTTTTTCATCAAG 59.294 33.333 0.00 0.00 0.00 3.02
2609 3508 7.232945 TGTTTGCTTTAGTTTTTCATCAAGC 57.767 32.000 0.00 0.00 37.69 4.01
2610 3509 6.019961 TGTTTGCTTTAGTTTTTCATCAAGCG 60.020 34.615 0.00 0.00 39.62 4.68
2611 3510 4.545610 TGCTTTAGTTTTTCATCAAGCGG 58.454 39.130 0.00 0.00 39.62 5.52
2612 3511 4.037446 TGCTTTAGTTTTTCATCAAGCGGT 59.963 37.500 0.00 0.00 39.62 5.68
2613 3512 4.982295 GCTTTAGTTTTTCATCAAGCGGTT 59.018 37.500 0.00 0.00 0.00 4.44
2614 3513 5.462068 GCTTTAGTTTTTCATCAAGCGGTTT 59.538 36.000 0.00 0.00 0.00 3.27
2615 3514 6.019075 GCTTTAGTTTTTCATCAAGCGGTTTT 60.019 34.615 0.00 0.00 0.00 2.43
2616 3515 7.458038 TTTAGTTTTTCATCAAGCGGTTTTC 57.542 32.000 0.00 0.00 0.00 2.29
2617 3516 5.262588 AGTTTTTCATCAAGCGGTTTTCT 57.737 34.783 0.00 0.00 0.00 2.52
2618 3517 5.043248 AGTTTTTCATCAAGCGGTTTTCTG 58.957 37.500 0.00 0.00 0.00 3.02
2619 3518 4.909696 TTTTCATCAAGCGGTTTTCTGA 57.090 36.364 0.00 0.00 0.00 3.27
2620 3519 5.452078 TTTTCATCAAGCGGTTTTCTGAT 57.548 34.783 0.00 0.00 0.00 2.90
2621 3520 5.452078 TTTCATCAAGCGGTTTTCTGATT 57.548 34.783 0.00 0.00 34.94 2.57
2624 3523 5.841810 TCATCAAGCGGTTTTCTGATTTTT 58.158 33.333 0.00 0.00 31.99 1.94
2631 3530 7.694388 AGCGGTTTTCTGATTTTTAAAACTC 57.306 32.000 10.49 10.49 40.96 3.01
2649 3548 7.740519 AAAACTCTTTCACAAAACAATCTCG 57.259 32.000 0.00 0.00 0.00 4.04
2650 3549 6.677781 AACTCTTTCACAAAACAATCTCGA 57.322 33.333 0.00 0.00 0.00 4.04
2651 3550 6.677781 ACTCTTTCACAAAACAATCTCGAA 57.322 33.333 0.00 0.00 0.00 3.71
2652 3551 7.264373 ACTCTTTCACAAAACAATCTCGAAT 57.736 32.000 0.00 0.00 0.00 3.34
2653 3552 7.707104 ACTCTTTCACAAAACAATCTCGAATT 58.293 30.769 0.00 0.00 0.00 2.17
2654 3553 8.190784 ACTCTTTCACAAAACAATCTCGAATTT 58.809 29.630 0.00 0.00 0.00 1.82
2655 3554 8.560576 TCTTTCACAAAACAATCTCGAATTTC 57.439 30.769 0.00 0.00 0.00 2.17
2656 3555 8.405531 TCTTTCACAAAACAATCTCGAATTTCT 58.594 29.630 0.00 0.00 0.00 2.52
2657 3556 9.663904 CTTTCACAAAACAATCTCGAATTTCTA 57.336 29.630 0.00 0.00 0.00 2.10
2658 3557 9.663904 TTTCACAAAACAATCTCGAATTTCTAG 57.336 29.630 0.00 0.00 0.00 2.43
2659 3558 8.601845 TCACAAAACAATCTCGAATTTCTAGA 57.398 30.769 3.40 3.40 0.00 2.43
2660 3559 9.051679 TCACAAAACAATCTCGAATTTCTAGAA 57.948 29.630 0.00 0.00 0.00 2.10
2661 3560 9.663904 CACAAAACAATCTCGAATTTCTAGAAA 57.336 29.630 19.83 19.83 34.46 2.52
2746 3645 3.659786 ACAAGAATTTTAAAAGCGCCCC 58.340 40.909 2.29 0.00 0.00 5.80
2752 3651 1.931635 TTTAAAAGCGCCCCTGGATT 58.068 45.000 2.29 0.00 0.00 3.01
2768 3668 6.380846 CCCCTGGATTTCTGAAAATATTCACA 59.619 38.462 6.95 1.10 40.59 3.58
2769 3669 7.093377 CCCCTGGATTTCTGAAAATATTCACAA 60.093 37.037 6.95 0.00 40.59 3.33
2909 3857 7.730364 ACTTCAGAGAAATGTTTATGAACGT 57.270 32.000 0.00 0.00 38.65 3.99
2910 3858 7.576236 ACTTCAGAGAAATGTTTATGAACGTG 58.424 34.615 0.00 0.00 38.65 4.49
2911 3859 7.441157 ACTTCAGAGAAATGTTTATGAACGTGA 59.559 33.333 0.00 0.00 38.65 4.35
2937 3885 5.638596 AATGTCCGTGGATTTAGGAAAAC 57.361 39.130 0.00 0.00 35.60 2.43
2942 3890 3.423907 CCGTGGATTTAGGAAAACGTTCG 60.424 47.826 0.00 0.00 34.28 3.95
2971 3941 4.458256 TCATGCATCATAAGGGATGGTT 57.542 40.909 0.00 0.00 43.85 3.67
3042 4014 8.310382 AGACATCTTAGATAGTTCATGTATGGC 58.690 37.037 0.00 0.00 0.00 4.40
3047 4019 0.107831 TAGTTCATGTATGGCGGGCC 59.892 55.000 1.86 1.86 0.00 5.80
3059 4031 0.036483 GGCGGGCCACAATTTTGATT 60.036 50.000 4.39 0.00 35.81 2.57
3062 4034 2.353208 GCGGGCCACAATTTTGATTACA 60.353 45.455 4.39 0.00 0.00 2.41
3063 4035 3.510719 CGGGCCACAATTTTGATTACAG 58.489 45.455 4.39 0.00 0.00 2.74
3077 4049 5.947228 TGATTACAGTTTGCAAGAAGGAG 57.053 39.130 0.00 0.00 0.00 3.69
3078 4050 5.620206 TGATTACAGTTTGCAAGAAGGAGA 58.380 37.500 0.00 0.00 0.00 3.71
3080 4052 6.716628 TGATTACAGTTTGCAAGAAGGAGAAT 59.283 34.615 0.00 0.00 0.00 2.40
3081 4053 6.959639 TTACAGTTTGCAAGAAGGAGAATT 57.040 33.333 0.00 0.00 0.00 2.17
3083 4055 6.566197 ACAGTTTGCAAGAAGGAGAATTAG 57.434 37.500 0.00 0.00 0.00 1.73
3084 4056 6.299141 ACAGTTTGCAAGAAGGAGAATTAGA 58.701 36.000 0.00 0.00 0.00 2.10
3085 4057 6.429385 ACAGTTTGCAAGAAGGAGAATTAGAG 59.571 38.462 0.00 0.00 0.00 2.43
3086 4058 6.652481 CAGTTTGCAAGAAGGAGAATTAGAGA 59.348 38.462 0.00 0.00 0.00 3.10
3087 4059 7.336427 CAGTTTGCAAGAAGGAGAATTAGAGAT 59.664 37.037 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 0.036952 CACTTCGCTCACCTGGTGAT 60.037 55.000 28.45 11.11 41.94 3.06
166 167 4.559229 CGCAGCTCTCCGCATCGA 62.559 66.667 0.00 0.00 42.61 3.59
236 237 1.001520 CATCACCAACACTACCGTCCA 59.998 52.381 0.00 0.00 0.00 4.02
612 673 3.818787 GGCGCCGAACTCCTACGA 61.819 66.667 12.58 0.00 0.00 3.43
969 1085 4.779733 TCTCCCCCACTCCGCTCC 62.780 72.222 0.00 0.00 0.00 4.70
970 1086 3.462678 GTCTCCCCCACTCCGCTC 61.463 72.222 0.00 0.00 0.00 5.03
973 1089 3.141488 CTCGTCTCCCCCACTCCG 61.141 72.222 0.00 0.00 0.00 4.63
974 1090 0.903454 TTTCTCGTCTCCCCCACTCC 60.903 60.000 0.00 0.00 0.00 3.85
975 1091 0.533032 CTTTCTCGTCTCCCCCACTC 59.467 60.000 0.00 0.00 0.00 3.51
976 1092 0.114560 TCTTTCTCGTCTCCCCCACT 59.885 55.000 0.00 0.00 0.00 4.00
977 1093 0.533032 CTCTTTCTCGTCTCCCCCAC 59.467 60.000 0.00 0.00 0.00 4.61
978 1094 0.614979 CCTCTTTCTCGTCTCCCCCA 60.615 60.000 0.00 0.00 0.00 4.96
979 1095 0.324460 TCCTCTTTCTCGTCTCCCCC 60.324 60.000 0.00 0.00 0.00 5.40
980 1096 1.107945 CTCCTCTTTCTCGTCTCCCC 58.892 60.000 0.00 0.00 0.00 4.81
981 1097 2.021457 CTCTCCTCTTTCTCGTCTCCC 58.979 57.143 0.00 0.00 0.00 4.30
982 1098 2.993937 TCTCTCCTCTTTCTCGTCTCC 58.006 52.381 0.00 0.00 0.00 3.71
983 1099 5.238650 CCTTATCTCTCCTCTTTCTCGTCTC 59.761 48.000 0.00 0.00 0.00 3.36
984 1100 5.130350 CCTTATCTCTCCTCTTTCTCGTCT 58.870 45.833 0.00 0.00 0.00 4.18
985 1101 4.885325 ACCTTATCTCTCCTCTTTCTCGTC 59.115 45.833 0.00 0.00 0.00 4.20
986 1102 4.642885 CACCTTATCTCTCCTCTTTCTCGT 59.357 45.833 0.00 0.00 0.00 4.18
987 1103 4.884744 TCACCTTATCTCTCCTCTTTCTCG 59.115 45.833 0.00 0.00 0.00 4.04
988 1104 5.301805 CCTCACCTTATCTCTCCTCTTTCTC 59.698 48.000 0.00 0.00 0.00 2.87
989 1105 5.043732 TCCTCACCTTATCTCTCCTCTTTCT 60.044 44.000 0.00 0.00 0.00 2.52
990 1106 5.205056 TCCTCACCTTATCTCTCCTCTTTC 58.795 45.833 0.00 0.00 0.00 2.62
991 1107 5.208121 CTCCTCACCTTATCTCTCCTCTTT 58.792 45.833 0.00 0.00 0.00 2.52
992 1108 4.387437 CCTCCTCACCTTATCTCTCCTCTT 60.387 50.000 0.00 0.00 0.00 2.85
993 1109 3.140144 CCTCCTCACCTTATCTCTCCTCT 59.860 52.174 0.00 0.00 0.00 3.69
994 1110 3.139397 TCCTCCTCACCTTATCTCTCCTC 59.861 52.174 0.00 0.00 0.00 3.71
995 1111 3.135279 TCCTCCTCACCTTATCTCTCCT 58.865 50.000 0.00 0.00 0.00 3.69
996 1112 3.117284 ACTCCTCCTCACCTTATCTCTCC 60.117 52.174 0.00 0.00 0.00 3.71
997 1113 3.888930 CACTCCTCCTCACCTTATCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
998 1114 3.373658 CCACTCCTCCTCACCTTATCTCT 60.374 52.174 0.00 0.00 0.00 3.10
999 1115 2.962421 CCACTCCTCCTCACCTTATCTC 59.038 54.545 0.00 0.00 0.00 2.75
1000 1116 2.359781 CCCACTCCTCCTCACCTTATCT 60.360 54.545 0.00 0.00 0.00 1.98
1001 1117 2.043227 CCCACTCCTCCTCACCTTATC 58.957 57.143 0.00 0.00 0.00 1.75
1002 1118 1.344496 CCCCACTCCTCCTCACCTTAT 60.344 57.143 0.00 0.00 0.00 1.73
1003 1119 0.042731 CCCCACTCCTCCTCACCTTA 59.957 60.000 0.00 0.00 0.00 2.69
1004 1120 1.229658 CCCCACTCCTCCTCACCTT 60.230 63.158 0.00 0.00 0.00 3.50
1005 1121 2.452114 CCCCACTCCTCCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
1006 1122 3.403558 GCCCCACTCCTCCTCACC 61.404 72.222 0.00 0.00 0.00 4.02
1007 1123 3.775654 CGCCCCACTCCTCCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
1008 1124 4.316823 ACGCCCCACTCCTCCTCA 62.317 66.667 0.00 0.00 0.00 3.86
1009 1125 3.775654 CACGCCCCACTCCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
1010 1126 3.625632 ATCACGCCCCACTCCTCCT 62.626 63.158 0.00 0.00 0.00 3.69
1011 1127 3.083997 ATCACGCCCCACTCCTCC 61.084 66.667 0.00 0.00 0.00 4.30
1012 1128 2.187946 CATCACGCCCCACTCCTC 59.812 66.667 0.00 0.00 0.00 3.71
1013 1129 3.402681 CCATCACGCCCCACTCCT 61.403 66.667 0.00 0.00 0.00 3.69
1014 1130 3.717294 ACCATCACGCCCCACTCC 61.717 66.667 0.00 0.00 0.00 3.85
1015 1131 2.436646 CACCATCACGCCCCACTC 60.437 66.667 0.00 0.00 0.00 3.51
1016 1132 4.033776 CCACCATCACGCCCCACT 62.034 66.667 0.00 0.00 0.00 4.00
1017 1133 2.869503 CTACCACCATCACGCCCCAC 62.870 65.000 0.00 0.00 0.00 4.61
1018 1134 2.608059 TACCACCATCACGCCCCA 60.608 61.111 0.00 0.00 0.00 4.96
1019 1135 2.189521 CTACCACCATCACGCCCC 59.810 66.667 0.00 0.00 0.00 5.80
1020 1136 1.332144 TACCTACCACCATCACGCCC 61.332 60.000 0.00 0.00 0.00 6.13
1021 1137 0.104304 CTACCTACCACCATCACGCC 59.896 60.000 0.00 0.00 0.00 5.68
1022 1138 0.822164 ACTACCTACCACCATCACGC 59.178 55.000 0.00 0.00 0.00 5.34
1023 1139 1.065102 CGACTACCTACCACCATCACG 59.935 57.143 0.00 0.00 0.00 4.35
1024 1140 2.372264 TCGACTACCTACCACCATCAC 58.628 52.381 0.00 0.00 0.00 3.06
1025 1141 2.756760 GTTCGACTACCTACCACCATCA 59.243 50.000 0.00 0.00 0.00 3.07
1026 1142 3.022406 AGTTCGACTACCTACCACCATC 58.978 50.000 0.00 0.00 0.00 3.51
1027 1143 2.758979 CAGTTCGACTACCTACCACCAT 59.241 50.000 0.00 0.00 0.00 3.55
1028 1144 2.165167 CAGTTCGACTACCTACCACCA 58.835 52.381 0.00 0.00 0.00 4.17
1029 1145 2.422832 CTCAGTTCGACTACCTACCACC 59.577 54.545 0.00 0.00 0.00 4.61
1030 1146 2.159407 GCTCAGTTCGACTACCTACCAC 60.159 54.545 0.00 0.00 0.00 4.16
1031 1147 2.089980 GCTCAGTTCGACTACCTACCA 58.910 52.381 0.00 0.00 0.00 3.25
1032 1148 1.063764 CGCTCAGTTCGACTACCTACC 59.936 57.143 0.00 0.00 0.00 3.18
1033 1149 1.063764 CCGCTCAGTTCGACTACCTAC 59.936 57.143 0.00 0.00 0.00 3.18
1034 1150 1.065926 TCCGCTCAGTTCGACTACCTA 60.066 52.381 0.00 0.00 0.00 3.08
1035 1151 0.322277 TCCGCTCAGTTCGACTACCT 60.322 55.000 0.00 0.00 0.00 3.08
1036 1152 0.099082 CTCCGCTCAGTTCGACTACC 59.901 60.000 0.00 0.00 0.00 3.18
1037 1153 0.099082 CCTCCGCTCAGTTCGACTAC 59.901 60.000 0.00 0.00 0.00 2.73
1038 1154 1.654954 GCCTCCGCTCAGTTCGACTA 61.655 60.000 0.00 0.00 0.00 2.59
1039 1155 2.995872 GCCTCCGCTCAGTTCGACT 61.996 63.158 0.00 0.00 0.00 4.18
1040 1156 2.507324 GCCTCCGCTCAGTTCGAC 60.507 66.667 0.00 0.00 0.00 4.20
1041 1157 2.351244 ATGCCTCCGCTCAGTTCGA 61.351 57.895 0.00 0.00 35.36 3.71
1042 1158 2.169789 CATGCCTCCGCTCAGTTCG 61.170 63.158 0.00 0.00 35.36 3.95
1043 1159 1.817099 CCATGCCTCCGCTCAGTTC 60.817 63.158 0.00 0.00 35.36 3.01
1044 1160 2.270205 CCATGCCTCCGCTCAGTT 59.730 61.111 0.00 0.00 35.36 3.16
1045 1161 4.479993 GCCATGCCTCCGCTCAGT 62.480 66.667 0.00 0.00 35.36 3.41
1048 1164 4.615815 ATCGCCATGCCTCCGCTC 62.616 66.667 0.00 0.00 35.36 5.03
1049 1165 4.923942 CATCGCCATGCCTCCGCT 62.924 66.667 0.00 0.00 35.36 5.52
1051 1167 4.240103 TCCATCGCCATGCCTCCG 62.240 66.667 0.00 0.00 0.00 4.63
1052 1168 2.592861 GTCCATCGCCATGCCTCC 60.593 66.667 0.00 0.00 0.00 4.30
1053 1169 1.451927 TTGTCCATCGCCATGCCTC 60.452 57.895 0.00 0.00 0.00 4.70
1054 1170 1.750399 GTTGTCCATCGCCATGCCT 60.750 57.895 0.00 0.00 0.00 4.75
1055 1171 2.045708 TGTTGTCCATCGCCATGCC 61.046 57.895 0.00 0.00 0.00 4.40
1056 1172 1.137404 GTGTTGTCCATCGCCATGC 59.863 57.895 0.00 0.00 0.00 4.06
1057 1173 1.802636 GGTGTTGTCCATCGCCATG 59.197 57.895 3.62 0.00 34.73 3.66
1058 1174 1.745115 CGGTGTTGTCCATCGCCAT 60.745 57.895 8.28 0.00 41.47 4.40
1059 1175 2.358125 CGGTGTTGTCCATCGCCA 60.358 61.111 8.28 0.00 41.47 5.69
1060 1176 3.124921 CCGGTGTTGTCCATCGCC 61.125 66.667 0.00 0.00 46.50 5.54
1061 1177 3.799755 GCCGGTGTTGTCCATCGC 61.800 66.667 1.90 0.00 46.50 4.58
1063 1179 2.690778 GCTGCCGGTGTTGTCCATC 61.691 63.158 1.90 0.00 0.00 3.51
1064 1180 2.672996 GCTGCCGGTGTTGTCCAT 60.673 61.111 1.90 0.00 0.00 3.41
1083 1199 0.171231 GAAAAATCTGGCCTGGTCGC 59.829 55.000 10.07 0.00 0.00 5.19
1084 1200 0.811281 GGAAAAATCTGGCCTGGTCG 59.189 55.000 10.07 0.00 0.00 4.79
1085 1201 1.923356 TGGAAAAATCTGGCCTGGTC 58.077 50.000 10.07 0.00 0.00 4.02
1086 1202 2.397044 TTGGAAAAATCTGGCCTGGT 57.603 45.000 10.07 0.00 0.00 4.00
1087 1203 2.027837 CCTTTGGAAAAATCTGGCCTGG 60.028 50.000 10.07 0.00 0.00 4.45
1088 1204 2.613725 GCCTTTGGAAAAATCTGGCCTG 60.614 50.000 3.32 2.92 33.45 4.85
1089 1205 1.625315 GCCTTTGGAAAAATCTGGCCT 59.375 47.619 3.32 0.00 33.45 5.19
1090 1206 1.625315 AGCCTTTGGAAAAATCTGGCC 59.375 47.619 0.00 0.00 39.68 5.36
1091 1207 3.069289 CAAGCCTTTGGAAAAATCTGGC 58.931 45.455 0.00 0.00 39.19 4.85
1092 1208 4.281688 TCTCAAGCCTTTGGAAAAATCTGG 59.718 41.667 0.00 0.00 34.97 3.86
1093 1209 5.242393 TCTCTCAAGCCTTTGGAAAAATCTG 59.758 40.000 0.00 0.00 34.97 2.90
1094 1210 5.388654 TCTCTCAAGCCTTTGGAAAAATCT 58.611 37.500 0.00 0.00 34.97 2.40
1095 1211 5.336293 CCTCTCTCAAGCCTTTGGAAAAATC 60.336 44.000 0.00 0.00 34.97 2.17
1096 1212 4.525874 CCTCTCTCAAGCCTTTGGAAAAAT 59.474 41.667 0.00 0.00 34.97 1.82
1097 1213 3.891366 CCTCTCTCAAGCCTTTGGAAAAA 59.109 43.478 0.00 0.00 34.97 1.94
1098 1214 3.117512 ACCTCTCTCAAGCCTTTGGAAAA 60.118 43.478 0.00 0.00 34.97 2.29
1099 1215 2.443255 ACCTCTCTCAAGCCTTTGGAAA 59.557 45.455 0.00 0.00 34.97 3.13
1100 1216 2.057922 ACCTCTCTCAAGCCTTTGGAA 58.942 47.619 0.00 0.00 34.97 3.53
1101 1217 1.349026 CACCTCTCTCAAGCCTTTGGA 59.651 52.381 0.00 0.00 34.97 3.53
1102 1218 1.818642 CACCTCTCTCAAGCCTTTGG 58.181 55.000 0.00 0.00 34.97 3.28
1103 1219 1.163554 GCACCTCTCTCAAGCCTTTG 58.836 55.000 0.00 0.00 35.57 2.77
1104 1220 0.321122 CGCACCTCTCTCAAGCCTTT 60.321 55.000 0.00 0.00 0.00 3.11
1105 1221 1.294780 CGCACCTCTCTCAAGCCTT 59.705 57.895 0.00 0.00 0.00 4.35
1106 1222 2.654079 CCGCACCTCTCTCAAGCCT 61.654 63.158 0.00 0.00 0.00 4.58
1107 1223 2.125350 CCGCACCTCTCTCAAGCC 60.125 66.667 0.00 0.00 0.00 4.35
1108 1224 1.605058 TACCCGCACCTCTCTCAAGC 61.605 60.000 0.00 0.00 0.00 4.01
1109 1225 1.067821 GATACCCGCACCTCTCTCAAG 59.932 57.143 0.00 0.00 0.00 3.02
1110 1226 1.112113 GATACCCGCACCTCTCTCAA 58.888 55.000 0.00 0.00 0.00 3.02
1111 1227 0.259065 AGATACCCGCACCTCTCTCA 59.741 55.000 0.00 0.00 0.00 3.27
1112 1228 1.404843 AAGATACCCGCACCTCTCTC 58.595 55.000 0.00 0.00 0.00 3.20
1113 1229 1.867363 AAAGATACCCGCACCTCTCT 58.133 50.000 0.00 0.00 0.00 3.10
1114 1230 2.678336 CAAAAAGATACCCGCACCTCTC 59.322 50.000 0.00 0.00 0.00 3.20
1115 1231 2.711542 CAAAAAGATACCCGCACCTCT 58.288 47.619 0.00 0.00 0.00 3.69
1116 1232 1.132453 GCAAAAAGATACCCGCACCTC 59.868 52.381 0.00 0.00 0.00 3.85
1117 1233 1.173913 GCAAAAAGATACCCGCACCT 58.826 50.000 0.00 0.00 0.00 4.00
1118 1234 0.885196 TGCAAAAAGATACCCGCACC 59.115 50.000 0.00 0.00 0.00 5.01
1119 1235 2.715737 TTGCAAAAAGATACCCGCAC 57.284 45.000 0.00 0.00 0.00 5.34
1120 1236 3.735237 TTTTGCAAAAAGATACCCGCA 57.265 38.095 21.94 0.00 0.00 5.69
1121 1237 4.450757 ACAATTTTGCAAAAAGATACCCGC 59.549 37.500 27.10 0.00 0.00 6.13
1122 1238 5.694006 TGACAATTTTGCAAAAAGATACCCG 59.306 36.000 27.10 12.09 0.00 5.28
1123 1239 7.671495 ATGACAATTTTGCAAAAAGATACCC 57.329 32.000 27.10 13.32 0.00 3.69
1124 1240 9.423061 ACTATGACAATTTTGCAAAAAGATACC 57.577 29.630 27.10 14.67 0.00 2.73
1139 1255 9.886132 ACGGATAGAAAGTAAACTATGACAATT 57.114 29.630 0.00 0.00 30.74 2.32
1140 1256 9.530633 GACGGATAGAAAGTAAACTATGACAAT 57.469 33.333 0.00 0.00 30.74 2.71
1141 1257 8.525316 TGACGGATAGAAAGTAAACTATGACAA 58.475 33.333 0.00 0.00 30.74 3.18
1142 1258 8.058667 TGACGGATAGAAAGTAAACTATGACA 57.941 34.615 0.00 0.00 30.74 3.58
1143 1259 8.404000 TCTGACGGATAGAAAGTAAACTATGAC 58.596 37.037 0.00 0.00 30.74 3.06
1144 1260 8.515695 TCTGACGGATAGAAAGTAAACTATGA 57.484 34.615 0.00 0.00 30.74 2.15
1153 1269 9.521841 TTGATCTATATCTGACGGATAGAAAGT 57.478 33.333 9.78 0.00 39.89 2.66
1156 1272 8.451748 CGTTTGATCTATATCTGACGGATAGAA 58.548 37.037 9.78 0.63 39.89 2.10
1157 1273 7.975750 CGTTTGATCTATATCTGACGGATAGA 58.024 38.462 9.78 4.48 39.89 1.98
1163 1279 6.003234 AGACCGTTTGATCTATATCTGACG 57.997 41.667 0.00 8.68 39.08 4.35
1168 1284 9.803315 TGCAATATAGACCGTTTGATCTATATC 57.197 33.333 12.07 4.58 44.71 1.63
1169 1285 9.809096 CTGCAATATAGACCGTTTGATCTATAT 57.191 33.333 7.62 7.62 46.24 0.86
1170 1286 8.251026 CCTGCAATATAGACCGTTTGATCTATA 58.749 37.037 4.02 4.02 42.05 1.31
1171 1287 7.039011 TCCTGCAATATAGACCGTTTGATCTAT 60.039 37.037 0.00 0.00 40.47 1.98
1172 1288 6.266786 TCCTGCAATATAGACCGTTTGATCTA 59.733 38.462 0.00 0.00 32.11 1.98
1173 1289 5.070446 TCCTGCAATATAGACCGTTTGATCT 59.930 40.000 0.00 0.00 0.00 2.75
1174 1290 5.297547 TCCTGCAATATAGACCGTTTGATC 58.702 41.667 0.00 0.00 0.00 2.92
1175 1291 5.290493 TCCTGCAATATAGACCGTTTGAT 57.710 39.130 0.00 0.00 0.00 2.57
1176 1292 4.746535 TCCTGCAATATAGACCGTTTGA 57.253 40.909 0.00 0.00 0.00 2.69
1177 1293 4.214119 CCATCCTGCAATATAGACCGTTTG 59.786 45.833 0.00 0.00 0.00 2.93
1178 1294 4.389374 CCATCCTGCAATATAGACCGTTT 58.611 43.478 0.00 0.00 0.00 3.60
1179 1295 3.807209 GCCATCCTGCAATATAGACCGTT 60.807 47.826 0.00 0.00 0.00 4.44
1180 1296 2.289694 GCCATCCTGCAATATAGACCGT 60.290 50.000 0.00 0.00 0.00 4.83
1181 1297 2.289631 TGCCATCCTGCAATATAGACCG 60.290 50.000 0.00 0.00 38.56 4.79
1182 1298 3.341823 CTGCCATCCTGCAATATAGACC 58.658 50.000 0.00 0.00 41.51 3.85
1183 1299 3.341823 CCTGCCATCCTGCAATATAGAC 58.658 50.000 0.00 0.00 41.51 2.59
1184 1300 2.290514 GCCTGCCATCCTGCAATATAGA 60.291 50.000 0.00 0.00 41.51 1.98
1185 1301 2.089980 GCCTGCCATCCTGCAATATAG 58.910 52.381 0.00 0.00 41.51 1.31
1186 1302 1.424684 TGCCTGCCATCCTGCAATATA 59.575 47.619 0.00 0.00 41.51 0.86
1187 1303 0.186630 TGCCTGCCATCCTGCAATAT 59.813 50.000 0.00 0.00 41.51 1.28
1188 1304 0.752743 GTGCCTGCCATCCTGCAATA 60.753 55.000 0.00 0.00 41.51 1.90
1189 1305 2.056223 GTGCCTGCCATCCTGCAAT 61.056 57.895 0.00 0.00 41.51 3.56
1190 1306 2.677524 GTGCCTGCCATCCTGCAA 60.678 61.111 0.00 0.00 41.51 4.08
1191 1307 3.969119 TGTGCCTGCCATCCTGCA 61.969 61.111 0.00 0.00 39.37 4.41
1192 1308 3.446570 GTGTGCCTGCCATCCTGC 61.447 66.667 0.00 0.00 0.00 4.85
1193 1309 2.753043 GGTGTGCCTGCCATCCTG 60.753 66.667 0.00 0.00 0.00 3.86
1194 1310 2.619446 ATGGTGTGCCTGCCATCCT 61.619 57.895 0.00 0.00 41.24 3.24
1195 1311 2.043652 ATGGTGTGCCTGCCATCC 60.044 61.111 0.00 0.00 41.24 3.51
1198 1314 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
1199 1315 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
1200 1316 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
1201 1317 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
1202 1318 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
1203 1319 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
1204 1320 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
1205 1321 1.733912 CGAGTTGGTGATGATGGTGTG 59.266 52.381 0.00 0.00 0.00 3.82
1206 1322 1.339055 CCGAGTTGGTGATGATGGTGT 60.339 52.381 0.00 0.00 0.00 4.16
1207 1323 1.372582 CCGAGTTGGTGATGATGGTG 58.627 55.000 0.00 0.00 0.00 4.17
1208 1324 3.861341 CCGAGTTGGTGATGATGGT 57.139 52.632 0.00 0.00 0.00 3.55
1218 1334 7.769220 TCTACTCTTATAAAAGACCGAGTTGG 58.231 38.462 7.78 0.00 46.41 3.77
1219 1335 8.675504 TCTCTACTCTTATAAAAGACCGAGTTG 58.324 37.037 7.78 6.72 36.80 3.16
1220 1336 8.804912 TCTCTACTCTTATAAAAGACCGAGTT 57.195 34.615 7.78 0.00 36.80 3.01
1221 1337 8.983702 ATCTCTACTCTTATAAAAGACCGAGT 57.016 34.615 7.65 7.65 36.80 4.18
1236 1352 9.775854 CAATTGGTTTGATGATATCTCTACTCT 57.224 33.333 3.98 0.00 37.53 3.24
1237 1353 9.770097 TCAATTGGTTTGATGATATCTCTACTC 57.230 33.333 5.42 0.00 39.44 2.59
1238 1354 9.775854 CTCAATTGGTTTGATGATATCTCTACT 57.224 33.333 5.42 0.00 43.30 2.57
1239 1355 9.553064 ACTCAATTGGTTTGATGATATCTCTAC 57.447 33.333 5.42 2.99 43.30 2.59
1240 1356 9.551734 CACTCAATTGGTTTGATGATATCTCTA 57.448 33.333 5.42 0.00 43.30 2.43
1241 1357 7.501559 CCACTCAATTGGTTTGATGATATCTCT 59.498 37.037 5.42 0.00 43.30 3.10
1242 1358 7.500227 TCCACTCAATTGGTTTGATGATATCTC 59.500 37.037 5.42 0.18 43.30 2.75
1243 1359 7.284034 GTCCACTCAATTGGTTTGATGATATCT 59.716 37.037 5.42 0.00 43.30 1.98
1244 1360 7.067372 TGTCCACTCAATTGGTTTGATGATATC 59.933 37.037 5.42 0.00 43.30 1.63
1245 1361 6.891361 TGTCCACTCAATTGGTTTGATGATAT 59.109 34.615 5.42 0.00 43.30 1.63
1271 1387 0.664224 TGCATAGCGCCAATCATGTG 59.336 50.000 2.29 0.00 41.33 3.21
1453 1576 4.570930 TGTTGCCGATGTACATAAGTGAA 58.429 39.130 8.71 0.00 0.00 3.18
1537 1660 0.376502 GCTTGCTGCTTTCGAGATCC 59.623 55.000 0.00 0.00 38.95 3.36
1615 1738 2.036217 CAGTGCACAAAACACCATCCAT 59.964 45.455 21.04 0.00 38.87 3.41
1675 1798 3.243168 CCCGATTATACACCTCGTCGAAA 60.243 47.826 0.00 0.00 0.00 3.46
1691 1814 7.065803 CACAACTTCAAATACATAGACCCGATT 59.934 37.037 0.00 0.00 0.00 3.34
1695 1818 7.390718 ACTTCACAACTTCAAATACATAGACCC 59.609 37.037 0.00 0.00 0.00 4.46
1696 1819 8.230486 CACTTCACAACTTCAAATACATAGACC 58.770 37.037 0.00 0.00 0.00 3.85
1710 1833 0.746659 GCTTGCCCACTTCACAACTT 59.253 50.000 0.00 0.00 0.00 2.66
1711 1834 0.106519 AGCTTGCCCACTTCACAACT 60.107 50.000 0.00 0.00 0.00 3.16
1832 2086 3.118811 GCTGCTGAAGATCTTCTACACCT 60.119 47.826 30.45 0.00 40.14 4.00
1833 2087 3.194062 GCTGCTGAAGATCTTCTACACC 58.806 50.000 30.45 17.99 40.14 4.16
1834 2088 3.854666 TGCTGCTGAAGATCTTCTACAC 58.145 45.455 30.45 21.37 40.14 2.90
1835 2089 4.750021 ATGCTGCTGAAGATCTTCTACA 57.250 40.909 30.45 25.68 40.14 2.74
1836 2090 6.222389 ACATATGCTGCTGAAGATCTTCTAC 58.778 40.000 30.45 23.14 40.14 2.59
1837 2091 6.416631 ACATATGCTGCTGAAGATCTTCTA 57.583 37.500 30.45 18.32 40.14 2.10
1838 2092 5.293319 ACATATGCTGCTGAAGATCTTCT 57.707 39.130 30.45 14.78 40.14 2.85
1868 2123 6.092748 CACATAAATGTACAAACAAGGAGCC 58.907 40.000 0.00 0.00 39.39 4.70
1871 2126 7.663905 AGCTACACATAAATGTACAAACAAGGA 59.336 33.333 0.00 0.00 39.39 3.36
1976 2283 9.372369 AGAAGAATAGTAAAGTCTTGCATGTAC 57.628 33.333 0.00 0.00 31.80 2.90
2051 2648 2.350522 GCATGTCTACAACCTGTCCAG 58.649 52.381 0.00 0.00 0.00 3.86
2052 2649 1.003118 GGCATGTCTACAACCTGTCCA 59.997 52.381 0.00 0.00 0.00 4.02
2055 2652 2.479566 CAGGCATGTCTACAACCTGT 57.520 50.000 19.83 0.00 43.58 4.00
2070 2732 3.831715 ATAAACTGAAGTTTCGCAGGC 57.168 42.857 11.56 0.00 44.15 4.85
2103 2765 5.590259 GGTTATACAAACCATCACAGAGCAT 59.410 40.000 2.06 0.00 40.03 3.79
2105 2767 4.034048 CGGTTATACAAACCATCACAGAGC 59.966 45.833 7.62 0.00 40.28 4.09
2116 2778 6.549912 AAGACCAAACTCGGTTATACAAAC 57.450 37.500 0.00 0.00 40.22 2.93
2118 2780 8.851541 ATTAAAGACCAAACTCGGTTATACAA 57.148 30.769 0.00 0.00 40.22 2.41
2120 2782 8.601476 CAGATTAAAGACCAAACTCGGTTATAC 58.399 37.037 0.00 0.00 40.22 1.47
2122 2784 6.598064 CCAGATTAAAGACCAAACTCGGTTAT 59.402 38.462 0.00 0.00 40.22 1.89
2124 2786 4.760204 CCAGATTAAAGACCAAACTCGGTT 59.240 41.667 0.00 0.00 40.22 4.44
2127 2789 4.324267 ACCCAGATTAAAGACCAAACTCG 58.676 43.478 0.00 0.00 0.00 4.18
2128 2790 5.048013 CCAACCCAGATTAAAGACCAAACTC 60.048 44.000 0.00 0.00 0.00 3.01
2129 2791 4.832823 CCAACCCAGATTAAAGACCAAACT 59.167 41.667 0.00 0.00 0.00 2.66
2130 2792 4.830600 TCCAACCCAGATTAAAGACCAAAC 59.169 41.667 0.00 0.00 0.00 2.93
2162 2868 9.915629 ATCGATATTAAGACTTGAGGATTGTAC 57.084 33.333 0.00 0.00 0.00 2.90
2164 2870 9.482627 GAATCGATATTAAGACTTGAGGATTGT 57.517 33.333 0.00 0.00 0.00 2.71
2172 2942 5.920840 TGCTCCGAATCGATATTAAGACTTG 59.079 40.000 3.36 0.00 0.00 3.16
2177 2947 4.201532 CGCTTGCTCCGAATCGATATTAAG 60.202 45.833 3.36 3.52 0.00 1.85
2189 2959 0.036765 ACCAAATACGCTTGCTCCGA 60.037 50.000 0.00 0.00 0.00 4.55
2190 2960 0.373716 GACCAAATACGCTTGCTCCG 59.626 55.000 0.00 0.00 0.00 4.63
2192 2962 2.076863 AGTGACCAAATACGCTTGCTC 58.923 47.619 0.00 0.00 0.00 4.26
2209 3010 3.620374 CCCGTCATTCAGATTTCAGAGTG 59.380 47.826 0.00 0.00 0.00 3.51
2215 3016 3.756434 TGTTTCCCCGTCATTCAGATTTC 59.244 43.478 0.00 0.00 0.00 2.17
2216 3017 3.758554 CTGTTTCCCCGTCATTCAGATTT 59.241 43.478 0.00 0.00 0.00 2.17
2217 3018 3.009033 TCTGTTTCCCCGTCATTCAGATT 59.991 43.478 0.00 0.00 0.00 2.40
2218 3019 2.571653 TCTGTTTCCCCGTCATTCAGAT 59.428 45.455 0.00 0.00 0.00 2.90
2228 3029 3.939066 ACAGTATTTCTCTGTTTCCCCG 58.061 45.455 0.00 0.00 42.50 5.73
2266 3067 5.746284 AGCTGGTTAGTTAATTCCTCTTCC 58.254 41.667 0.00 0.00 0.00 3.46
2296 3122 2.356313 CGAGTGCTGCAGAACGGT 60.356 61.111 20.43 1.01 0.00 4.83
2298 3124 3.782244 GGCGAGTGCTGCAGAACG 61.782 66.667 20.43 16.59 42.25 3.95
2337 3163 4.214327 CTTCCCGGAGCTCCTCGC 62.214 72.222 29.73 4.32 39.57 5.03
2392 3243 4.766632 CAAGGCCCCCAAGGAGCC 62.767 72.222 0.00 10.99 45.22 4.70
2393 3244 3.661648 TCAAGGCCCCCAAGGAGC 61.662 66.667 0.00 0.00 38.24 4.70
2442 3293 2.100631 CGAAGGCGACAAAGGCGAT 61.101 57.895 0.00 0.00 41.99 4.58
2484 3354 2.108362 CCGGCGGGTAACTGGATC 59.892 66.667 20.56 0.00 45.89 3.36
2485 3355 3.476419 CCCGGCGGGTAACTGGAT 61.476 66.667 36.52 0.00 45.89 3.41
2486 3356 4.700448 TCCCGGCGGGTAACTGGA 62.700 66.667 41.32 20.58 44.74 3.86
2488 3358 3.366739 GAGTCCCGGCGGGTAACTG 62.367 68.421 41.32 17.96 44.74 3.16
2489 3359 3.073101 GAGTCCCGGCGGGTAACT 61.073 66.667 41.32 36.54 44.74 2.24
2490 3360 4.152964 GGAGTCCCGGCGGGTAAC 62.153 72.222 41.32 32.76 44.74 2.50
2491 3361 3.988050 ATGGAGTCCCGGCGGGTAA 62.988 63.158 41.32 23.83 44.74 2.85
2492 3362 4.468769 ATGGAGTCCCGGCGGGTA 62.469 66.667 41.32 26.50 44.74 3.69
2497 3367 1.673033 CGATTATGATGGAGTCCCGGC 60.673 57.143 6.74 0.00 34.29 6.13
2498 3368 1.673033 GCGATTATGATGGAGTCCCGG 60.673 57.143 6.74 0.00 34.29 5.73
2502 3372 2.072298 GGCTGCGATTATGATGGAGTC 58.928 52.381 0.00 0.00 0.00 3.36
2503 3373 1.606480 CGGCTGCGATTATGATGGAGT 60.606 52.381 0.00 0.00 0.00 3.85
2505 3375 0.392706 ACGGCTGCGATTATGATGGA 59.607 50.000 0.00 0.00 0.00 3.41
2510 3380 1.224069 CCCTCACGGCTGCGATTATG 61.224 60.000 0.00 0.00 0.00 1.90
2511 3381 1.069765 CCCTCACGGCTGCGATTAT 59.930 57.895 0.00 0.00 0.00 1.28
2512 3382 2.499205 CCCTCACGGCTGCGATTA 59.501 61.111 0.00 0.00 0.00 1.75
2555 3437 2.566010 CAAACCGGGTGAATGCGG 59.434 61.111 6.32 0.00 0.00 5.69
2557 3439 0.033366 AAAGCAAACCGGGTGAATGC 59.967 50.000 19.47 19.47 37.28 3.56
2564 3446 2.626266 AGGAAAACTAAAGCAAACCGGG 59.374 45.455 6.32 0.00 0.00 5.73
2567 3449 5.220586 GCAAACAGGAAAACTAAAGCAAACC 60.221 40.000 0.00 0.00 0.00 3.27
2572 3454 6.978659 ACTAAAGCAAACAGGAAAACTAAAGC 59.021 34.615 0.00 0.00 0.00 3.51
2575 3457 9.713713 AAAAACTAAAGCAAACAGGAAAACTAA 57.286 25.926 0.00 0.00 0.00 2.24
2576 3458 9.361315 GAAAAACTAAAGCAAACAGGAAAACTA 57.639 29.630 0.00 0.00 0.00 2.24
2577 3459 7.875554 TGAAAAACTAAAGCAAACAGGAAAACT 59.124 29.630 0.00 0.00 0.00 2.66
2578 3460 8.024146 TGAAAAACTAAAGCAAACAGGAAAAC 57.976 30.769 0.00 0.00 0.00 2.43
2605 3504 7.905126 AGTTTTAAAAATCAGAAAACCGCTTG 58.095 30.769 1.31 0.00 41.75 4.01
2606 3505 7.979537 AGAGTTTTAAAAATCAGAAAACCGCTT 59.020 29.630 25.29 2.67 41.75 4.68
2607 3506 7.489160 AGAGTTTTAAAAATCAGAAAACCGCT 58.511 30.769 25.29 5.14 41.75 5.52
2608 3507 7.694388 AGAGTTTTAAAAATCAGAAAACCGC 57.306 32.000 25.29 3.10 41.75 5.68
2624 3523 8.670135 TCGAGATTGTTTTGTGAAAGAGTTTTA 58.330 29.630 0.00 0.00 0.00 1.52
2631 3530 8.566008 AGAAATTCGAGATTGTTTTGTGAAAG 57.434 30.769 0.00 0.00 0.00 2.62
2719 3618 7.955324 GGGCGCTTTTAAAATTCTTGTATTTTC 59.045 33.333 7.64 0.00 38.36 2.29
2723 3622 5.186992 AGGGGCGCTTTTAAAATTCTTGTAT 59.813 36.000 7.64 0.00 0.00 2.29
2724 3623 4.525100 AGGGGCGCTTTTAAAATTCTTGTA 59.475 37.500 7.64 0.00 0.00 2.41
2725 3624 3.323691 AGGGGCGCTTTTAAAATTCTTGT 59.676 39.130 7.64 0.00 0.00 3.16
2728 3627 2.233676 CCAGGGGCGCTTTTAAAATTCT 59.766 45.455 7.64 0.00 0.00 2.40
2739 3638 1.852157 TTCAGAAATCCAGGGGCGCT 61.852 55.000 7.64 0.00 0.00 5.92
2741 3640 1.544724 TTTTCAGAAATCCAGGGGCG 58.455 50.000 0.00 0.00 0.00 6.13
2854 3754 9.807649 GACTATTTTCTAAACATGGCATGAAAT 57.192 29.630 32.74 24.95 0.00 2.17
2922 3870 4.460505 CACGAACGTTTTCCTAAATCCAC 58.539 43.478 0.46 0.00 0.00 4.02
2932 3880 2.776330 TGAAAGTGCACGAACGTTTTC 58.224 42.857 12.01 14.56 0.00 2.29
2937 3885 2.699910 GCATGAAAGTGCACGAACG 58.300 52.632 12.01 0.38 44.43 3.95
2956 3926 6.614657 CCTCCTAAAAACCATCCCTTATGAT 58.385 40.000 0.00 0.00 37.86 2.45
2963 3933 2.828661 AGCCTCCTAAAAACCATCCC 57.171 50.000 0.00 0.00 0.00 3.85
2971 3941 3.244582 TGGAGTGTGTAGCCTCCTAAAA 58.755 45.455 7.18 0.00 46.17 1.52
3028 3998 0.107831 GGCCCGCCATACATGAACTA 59.892 55.000 0.00 0.00 35.81 2.24
3030 4002 1.453015 TGGCCCGCCATACATGAAC 60.453 57.895 3.74 0.00 41.89 3.18
3041 4013 2.267426 GTAATCAAAATTGTGGCCCGC 58.733 47.619 0.00 0.00 0.00 6.13
3042 4014 3.056891 ACTGTAATCAAAATTGTGGCCCG 60.057 43.478 0.00 0.00 0.00 6.13
3047 4019 8.129161 TCTTGCAAACTGTAATCAAAATTGTG 57.871 30.769 0.00 0.00 0.00 3.33
3051 4023 7.725251 TCCTTCTTGCAAACTGTAATCAAAAT 58.275 30.769 0.00 0.00 0.00 1.82
3059 4031 7.450074 TCTAATTCTCCTTCTTGCAAACTGTA 58.550 34.615 0.00 0.00 0.00 2.74
3062 4034 6.773638 TCTCTAATTCTCCTTCTTGCAAACT 58.226 36.000 0.00 0.00 0.00 2.66
3063 4035 7.622893 ATCTCTAATTCTCCTTCTTGCAAAC 57.377 36.000 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.