Multiple sequence alignment - TraesCS3D01G032500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G032500 chr3D 100.000 6584 0 0 1 6584 11979469 11986052 0.000000e+00 12159.0
1 TraesCS3D01G032500 chr3D 98.762 808 10 0 5777 6584 56291632 56292439 0.000000e+00 1437.0
2 TraesCS3D01G032500 chr3D 89.394 198 19 2 1 196 257650412 257650609 1.420000e-61 248.0
3 TraesCS3D01G032500 chr3D 88.462 208 21 3 1 206 604796262 604796468 1.420000e-61 248.0
4 TraesCS3D01G032500 chr3B 94.244 2380 100 13 1394 3760 17238330 17240685 0.000000e+00 3602.0
5 TraesCS3D01G032500 chr3B 88.695 1203 78 26 4586 5770 17241814 17242976 0.000000e+00 1415.0
6 TraesCS3D01G032500 chr3B 94.418 842 33 6 3758 4596 17240719 17241549 0.000000e+00 1282.0
7 TraesCS3D01G032500 chr3B 80.847 543 57 21 903 1408 17237747 17238279 3.720000e-102 383.0
8 TraesCS3D01G032500 chr3B 87.069 116 6 5 428 543 17237263 17237369 8.970000e-24 122.0
9 TraesCS3D01G032500 chr4D 98.639 808 10 1 5777 6584 2811480 2812286 0.000000e+00 1430.0
10 TraesCS3D01G032500 chrUn 98.515 808 12 0 5777 6584 132126739 132127546 0.000000e+00 1426.0
11 TraesCS3D01G032500 chr6D 98.515 808 11 1 5777 6584 360677612 360678418 0.000000e+00 1424.0
12 TraesCS3D01G032500 chr6D 88.038 209 22 3 1 207 239294959 239295166 1.830000e-60 244.0
13 TraesCS3D01G032500 chr5D 98.391 808 13 0 5777 6584 447398706 447397899 0.000000e+00 1421.0
14 TraesCS3D01G032500 chr2D 98.267 808 14 0 5777 6584 61348966 61349773 0.000000e+00 1415.0
15 TraesCS3D01G032500 chr1D 98.020 808 16 0 5777 6584 365912912 365912105 0.000000e+00 1404.0
16 TraesCS3D01G032500 chr4A 96.786 809 25 1 5777 6584 636112886 636112078 0.000000e+00 1349.0
17 TraesCS3D01G032500 chr2B 96.539 809 27 1 5777 6584 63165416 63166224 0.000000e+00 1338.0
18 TraesCS3D01G032500 chr2B 89.394 198 19 2 1 196 23634816 23635013 1.420000e-61 248.0
19 TraesCS3D01G032500 chr3A 90.387 1009 89 3 1393 2395 25108893 25107887 0.000000e+00 1319.0
20 TraesCS3D01G032500 chr3A 83.286 1053 168 7 2682 3732 25107680 25106634 0.000000e+00 963.0
21 TraesCS3D01G032500 chr3A 83.626 513 71 8 903 1408 25109452 25108946 2.780000e-128 470.0
22 TraesCS3D01G032500 chr3A 79.245 530 80 11 4653 5179 25106027 25105525 6.320000e-90 342.0
23 TraesCS3D01G032500 chr3A 92.982 171 8 2 376 542 25110325 25110155 5.100000e-61 246.0
24 TraesCS3D01G032500 chr3A 97.143 70 1 1 284 353 25110384 25110316 4.170000e-22 117.0
25 TraesCS3D01G032500 chr3A 98.039 51 1 0 2393 2443 25107859 25107809 9.090000e-14 89.8
26 TraesCS3D01G032500 chr7A 90.909 198 15 3 1 196 703758637 703758441 5.060000e-66 263.0
27 TraesCS3D01G032500 chr7A 89.394 198 19 2 1 196 703809855 703809658 1.420000e-61 248.0
28 TraesCS3D01G032500 chr7D 89.899 198 18 2 1 196 111434267 111434464 3.050000e-63 254.0
29 TraesCS3D01G032500 chr6B 88.889 207 20 3 1 205 153658777 153658572 1.100000e-62 252.0
30 TraesCS3D01G032500 chr6B 88.406 207 20 4 1 205 153740052 153739848 5.100000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G032500 chr3D 11979469 11986052 6583 False 12159.000000 12159 100.0000 1 6584 1 chr3D.!!$F1 6583
1 TraesCS3D01G032500 chr3D 56291632 56292439 807 False 1437.000000 1437 98.7620 5777 6584 1 chr3D.!!$F2 807
2 TraesCS3D01G032500 chr3B 17237263 17242976 5713 False 1360.800000 3602 89.0546 428 5770 5 chr3B.!!$F1 5342
3 TraesCS3D01G032500 chr4D 2811480 2812286 806 False 1430.000000 1430 98.6390 5777 6584 1 chr4D.!!$F1 807
4 TraesCS3D01G032500 chrUn 132126739 132127546 807 False 1426.000000 1426 98.5150 5777 6584 1 chrUn.!!$F1 807
5 TraesCS3D01G032500 chr6D 360677612 360678418 806 False 1424.000000 1424 98.5150 5777 6584 1 chr6D.!!$F2 807
6 TraesCS3D01G032500 chr5D 447397899 447398706 807 True 1421.000000 1421 98.3910 5777 6584 1 chr5D.!!$R1 807
7 TraesCS3D01G032500 chr2D 61348966 61349773 807 False 1415.000000 1415 98.2670 5777 6584 1 chr2D.!!$F1 807
8 TraesCS3D01G032500 chr1D 365912105 365912912 807 True 1404.000000 1404 98.0200 5777 6584 1 chr1D.!!$R1 807
9 TraesCS3D01G032500 chr4A 636112078 636112886 808 True 1349.000000 1349 96.7860 5777 6584 1 chr4A.!!$R1 807
10 TraesCS3D01G032500 chr2B 63165416 63166224 808 False 1338.000000 1338 96.5390 5777 6584 1 chr2B.!!$F2 807
11 TraesCS3D01G032500 chr3A 25105525 25110384 4859 True 506.685714 1319 89.2440 284 5179 7 chr3A.!!$R1 4895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.108520 CCATACGTGTGGGCGTTAGT 60.109 55.000 22.66 0.00 43.04 2.24 F
745 1096 0.179108 CGGGAGGCTTTCTAGTTCGG 60.179 60.000 0.00 0.00 0.00 4.30 F
1667 2196 0.251354 AGCATGCTCAACCTCGTCAT 59.749 50.000 16.30 0.00 0.00 3.06 F
1784 2313 0.617413 ACCACTTGAGGGATCAGCTG 59.383 55.000 7.63 7.63 0.00 4.24 F
1841 2370 1.154112 CAAACGCAACGGCCATACC 60.154 57.895 2.24 0.00 36.38 2.73 F
2208 2737 1.507140 TGGTAAGGCCGATGAGGATT 58.493 50.000 0.00 0.00 45.00 3.01 F
3563 4146 2.038033 CGGTACCCACTTCCTTTTCTCA 59.962 50.000 6.25 0.00 0.00 3.27 F
5260 6300 0.541863 AGTTTATCGGCTGTGGAGGG 59.458 55.000 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 2370 0.037303 ACTCCACAATGGCACTCCTG 59.963 55.000 0.00 0.00 37.47 3.86 R
2385 2914 1.066908 CCTCTTCCTTCTCTAGCGCAG 59.933 57.143 11.47 5.22 0.00 5.18 R
3417 4000 2.515926 TGCCAGCATTTAAAAACGCA 57.484 40.000 9.45 3.49 0.00 5.24 R
3478 4061 3.942115 GCCTCCCACTCTGAATAAAGAAC 59.058 47.826 0.00 0.00 0.00 3.01 R
3607 4190 5.914635 ACAATGAAATGTTCGCAACAACTAG 59.085 36.000 5.94 0.00 45.86 2.57 R
4199 4962 1.049289 GTCGCCCCCAAGACCTAGAT 61.049 60.000 0.00 0.00 0.00 1.98 R
5477 6529 0.396435 TGAGTTGCAGGTTCATCCGT 59.604 50.000 0.00 0.00 41.99 4.69 R
6520 7576 2.299993 TCTGAATTAGTGCAGCTCGG 57.700 50.000 0.00 0.00 32.27 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.583912 GTCGAGACGGATTTAATGATGAAA 57.416 37.500 0.00 0.00 0.00 2.69
36 37 6.411652 GTCGAGACGGATTTAATGATGAAAC 58.588 40.000 0.00 0.00 0.00 2.78
37 38 5.231357 TCGAGACGGATTTAATGATGAAACG 59.769 40.000 0.00 0.00 0.00 3.60
38 39 5.556382 CGAGACGGATTTAATGATGAAACGG 60.556 44.000 0.00 0.00 0.00 4.44
39 40 5.424757 AGACGGATTTAATGATGAAACGGA 58.575 37.500 0.00 0.00 0.00 4.69
40 41 6.055588 AGACGGATTTAATGATGAAACGGAT 58.944 36.000 0.00 0.00 0.00 4.18
41 42 6.542370 AGACGGATTTAATGATGAAACGGATT 59.458 34.615 0.00 0.00 0.00 3.01
42 43 7.067008 AGACGGATTTAATGATGAAACGGATTT 59.933 33.333 0.00 0.00 0.00 2.17
43 44 7.543756 ACGGATTTAATGATGAAACGGATTTT 58.456 30.769 0.00 0.00 0.00 1.82
44 45 8.032451 ACGGATTTAATGATGAAACGGATTTTT 58.968 29.630 0.00 0.00 0.00 1.94
45 46 9.509855 CGGATTTAATGATGAAACGGATTTTTA 57.490 29.630 0.00 0.00 0.00 1.52
52 53 9.801873 AATGATGAAACGGATTTTTAATTCGAT 57.198 25.926 7.07 0.00 0.00 3.59
53 54 8.835467 TGATGAAACGGATTTTTAATTCGATC 57.165 30.769 7.07 5.69 0.00 3.69
54 55 8.673711 TGATGAAACGGATTTTTAATTCGATCT 58.326 29.630 7.07 0.00 0.00 2.75
55 56 9.503427 GATGAAACGGATTTTTAATTCGATCTT 57.497 29.630 7.07 3.87 0.00 2.40
56 57 9.855021 ATGAAACGGATTTTTAATTCGATCTTT 57.145 25.926 7.07 0.00 0.00 2.52
57 58 9.685828 TGAAACGGATTTTTAATTCGATCTTTT 57.314 25.926 7.07 0.00 0.00 2.27
95 96 6.905544 AAAAATTTAAGCCGAAAACCGAAA 57.094 29.167 0.00 0.00 41.76 3.46
96 97 6.905544 AAAATTTAAGCCGAAAACCGAAAA 57.094 29.167 0.00 0.00 41.76 2.29
97 98 6.519353 AAATTTAAGCCGAAAACCGAAAAG 57.481 33.333 0.00 0.00 41.76 2.27
98 99 4.897025 TTTAAGCCGAAAACCGAAAAGA 57.103 36.364 0.00 0.00 41.76 2.52
99 100 5.441709 TTTAAGCCGAAAACCGAAAAGAT 57.558 34.783 0.00 0.00 41.76 2.40
100 101 5.441709 TTAAGCCGAAAACCGAAAAGATT 57.558 34.783 0.00 0.00 41.76 2.40
101 102 3.554259 AGCCGAAAACCGAAAAGATTC 57.446 42.857 0.00 0.00 41.76 2.52
102 103 2.228103 AGCCGAAAACCGAAAAGATTCC 59.772 45.455 0.00 0.00 41.76 3.01
103 104 2.228103 GCCGAAAACCGAAAAGATTCCT 59.772 45.455 0.00 0.00 41.76 3.36
104 105 3.669824 GCCGAAAACCGAAAAGATTCCTC 60.670 47.826 0.00 0.00 41.76 3.71
105 106 3.119955 CCGAAAACCGAAAAGATTCCTCC 60.120 47.826 0.00 0.00 41.76 4.30
106 107 3.751698 CGAAAACCGAAAAGATTCCTCCT 59.248 43.478 0.00 0.00 41.76 3.69
107 108 4.933400 CGAAAACCGAAAAGATTCCTCCTA 59.067 41.667 0.00 0.00 41.76 2.94
108 109 5.410439 CGAAAACCGAAAAGATTCCTCCTAA 59.590 40.000 0.00 0.00 41.76 2.69
109 110 6.093633 CGAAAACCGAAAAGATTCCTCCTAAT 59.906 38.462 0.00 0.00 41.76 1.73
110 111 6.759497 AAACCGAAAAGATTCCTCCTAATG 57.241 37.500 0.00 0.00 31.52 1.90
111 112 5.437191 ACCGAAAAGATTCCTCCTAATGT 57.563 39.130 0.00 0.00 31.52 2.71
112 113 5.429130 ACCGAAAAGATTCCTCCTAATGTC 58.571 41.667 0.00 0.00 31.52 3.06
113 114 5.045869 ACCGAAAAGATTCCTCCTAATGTCA 60.046 40.000 0.00 0.00 31.52 3.58
114 115 6.058183 CCGAAAAGATTCCTCCTAATGTCAT 58.942 40.000 0.00 0.00 31.52 3.06
115 116 6.203723 CCGAAAAGATTCCTCCTAATGTCATC 59.796 42.308 0.00 0.00 31.52 2.92
116 117 6.989169 CGAAAAGATTCCTCCTAATGTCATCT 59.011 38.462 0.00 0.00 31.52 2.90
117 118 7.042187 CGAAAAGATTCCTCCTAATGTCATCTG 60.042 40.741 0.00 0.00 31.52 2.90
118 119 6.821616 AAGATTCCTCCTAATGTCATCTGT 57.178 37.500 0.00 0.00 0.00 3.41
119 120 6.821616 AGATTCCTCCTAATGTCATCTGTT 57.178 37.500 0.00 0.00 0.00 3.16
120 121 7.205515 AGATTCCTCCTAATGTCATCTGTTT 57.794 36.000 0.00 0.00 0.00 2.83
121 122 8.324191 AGATTCCTCCTAATGTCATCTGTTTA 57.676 34.615 0.00 0.00 0.00 2.01
122 123 8.207545 AGATTCCTCCTAATGTCATCTGTTTAC 58.792 37.037 0.00 0.00 0.00 2.01
123 124 6.867519 TCCTCCTAATGTCATCTGTTTACA 57.132 37.500 0.00 0.00 0.00 2.41
124 125 7.437713 TCCTCCTAATGTCATCTGTTTACAT 57.562 36.000 0.00 0.00 35.40 2.29
125 126 7.275183 TCCTCCTAATGTCATCTGTTTACATG 58.725 38.462 0.00 0.00 34.20 3.21
126 127 7.050377 CCTCCTAATGTCATCTGTTTACATGT 58.950 38.462 2.69 2.69 34.20 3.21
127 128 7.011763 CCTCCTAATGTCATCTGTTTACATGTG 59.988 40.741 9.11 0.00 34.20 3.21
128 129 6.823182 TCCTAATGTCATCTGTTTACATGTGG 59.177 38.462 9.11 0.00 34.20 4.17
129 130 4.970662 ATGTCATCTGTTTACATGTGGC 57.029 40.909 9.11 0.00 32.74 5.01
130 131 3.749226 TGTCATCTGTTTACATGTGGCA 58.251 40.909 9.11 3.71 0.00 4.92
131 132 4.140536 TGTCATCTGTTTACATGTGGCAA 58.859 39.130 9.11 0.00 0.00 4.52
132 133 4.582240 TGTCATCTGTTTACATGTGGCAAA 59.418 37.500 9.11 0.00 0.00 3.68
133 134 5.068329 TGTCATCTGTTTACATGTGGCAAAA 59.932 36.000 9.11 0.00 0.00 2.44
134 135 6.158598 GTCATCTGTTTACATGTGGCAAAAT 58.841 36.000 9.11 0.00 0.00 1.82
135 136 6.089820 GTCATCTGTTTACATGTGGCAAAATG 59.910 38.462 9.11 9.29 0.00 2.32
136 137 5.781210 TCTGTTTACATGTGGCAAAATGA 57.219 34.783 9.11 1.70 0.00 2.57
137 138 5.771469 TCTGTTTACATGTGGCAAAATGAG 58.229 37.500 9.11 2.21 0.00 2.90
138 139 5.301551 TCTGTTTACATGTGGCAAAATGAGT 59.698 36.000 9.11 0.55 0.00 3.41
139 140 5.288015 TGTTTACATGTGGCAAAATGAGTG 58.712 37.500 9.11 0.00 0.00 3.51
140 141 4.517952 TTACATGTGGCAAAATGAGTGG 57.482 40.909 9.11 0.00 0.00 4.00
141 142 2.318908 ACATGTGGCAAAATGAGTGGT 58.681 42.857 16.03 0.00 0.00 4.16
142 143 3.495331 ACATGTGGCAAAATGAGTGGTA 58.505 40.909 16.03 0.00 0.00 3.25
143 144 3.894427 ACATGTGGCAAAATGAGTGGTAA 59.106 39.130 16.03 0.00 0.00 2.85
144 145 4.343526 ACATGTGGCAAAATGAGTGGTAAA 59.656 37.500 16.03 0.00 0.00 2.01
145 146 5.163364 ACATGTGGCAAAATGAGTGGTAAAA 60.163 36.000 16.03 0.00 0.00 1.52
146 147 5.344743 TGTGGCAAAATGAGTGGTAAAAA 57.655 34.783 0.00 0.00 0.00 1.94
147 148 5.355596 TGTGGCAAAATGAGTGGTAAAAAG 58.644 37.500 0.00 0.00 0.00 2.27
148 149 5.127845 TGTGGCAAAATGAGTGGTAAAAAGA 59.872 36.000 0.00 0.00 0.00 2.52
149 150 5.462068 GTGGCAAAATGAGTGGTAAAAAGAC 59.538 40.000 0.00 0.00 0.00 3.01
150 151 5.127845 TGGCAAAATGAGTGGTAAAAAGACA 59.872 36.000 0.00 0.00 0.00 3.41
151 152 6.183360 TGGCAAAATGAGTGGTAAAAAGACAT 60.183 34.615 0.00 0.00 0.00 3.06
152 153 6.146021 GGCAAAATGAGTGGTAAAAAGACATG 59.854 38.462 0.00 0.00 0.00 3.21
153 154 6.701400 GCAAAATGAGTGGTAAAAAGACATGT 59.299 34.615 0.00 0.00 0.00 3.21
154 155 7.306749 GCAAAATGAGTGGTAAAAAGACATGTG 60.307 37.037 1.15 0.00 0.00 3.21
155 156 5.964958 ATGAGTGGTAAAAAGACATGTGG 57.035 39.130 1.15 0.00 0.00 4.17
156 157 4.141287 TGAGTGGTAAAAAGACATGTGGG 58.859 43.478 1.15 0.00 0.00 4.61
157 158 2.890945 AGTGGTAAAAAGACATGTGGGC 59.109 45.455 1.15 0.00 0.00 5.36
158 159 1.883275 TGGTAAAAAGACATGTGGGCG 59.117 47.619 1.15 0.00 0.00 6.13
159 160 2.156098 GGTAAAAAGACATGTGGGCGA 58.844 47.619 1.15 0.00 0.00 5.54
160 161 2.752903 GGTAAAAAGACATGTGGGCGAT 59.247 45.455 1.15 0.00 0.00 4.58
161 162 3.427503 GGTAAAAAGACATGTGGGCGATG 60.428 47.826 1.15 0.00 0.00 3.84
162 163 1.909700 AAAAGACATGTGGGCGATGT 58.090 45.000 1.15 0.00 36.73 3.06
163 164 1.167851 AAAGACATGTGGGCGATGTG 58.832 50.000 1.15 0.00 34.10 3.21
164 165 1.308069 AAGACATGTGGGCGATGTGC 61.308 55.000 1.15 0.00 45.38 4.57
173 174 4.575076 GCGATGTGCAAAATGCCA 57.425 50.000 0.00 0.00 44.23 4.92
174 175 3.053662 GCGATGTGCAAAATGCCAT 57.946 47.368 0.00 3.32 44.23 4.40
175 176 2.206815 GCGATGTGCAAAATGCCATA 57.793 45.000 0.00 0.00 44.23 2.74
176 177 1.854126 GCGATGTGCAAAATGCCATAC 59.146 47.619 0.00 0.00 44.23 2.39
177 178 2.110990 CGATGTGCAAAATGCCATACG 58.889 47.619 0.00 5.87 44.23 3.06
178 179 2.477694 CGATGTGCAAAATGCCATACGT 60.478 45.455 0.00 0.00 44.23 3.57
179 180 2.344504 TGTGCAAAATGCCATACGTG 57.655 45.000 0.00 0.00 44.23 4.49
180 181 1.611006 TGTGCAAAATGCCATACGTGT 59.389 42.857 0.00 0.00 44.23 4.49
181 182 1.984990 GTGCAAAATGCCATACGTGTG 59.015 47.619 5.16 5.16 44.23 3.82
182 183 1.067985 TGCAAAATGCCATACGTGTGG 60.068 47.619 25.60 25.60 44.23 4.17
183 184 1.735369 GCAAAATGCCATACGTGTGGG 60.735 52.381 29.62 14.69 39.73 4.61
187 188 2.744709 GCCATACGTGTGGGCGTT 60.745 61.111 29.62 0.00 43.04 4.84
188 189 1.448189 GCCATACGTGTGGGCGTTA 60.448 57.895 29.62 0.00 43.04 3.18
189 190 1.426041 GCCATACGTGTGGGCGTTAG 61.426 60.000 29.62 5.85 43.04 2.34
190 191 0.108520 CCATACGTGTGGGCGTTAGT 60.109 55.000 22.66 0.00 43.04 2.24
191 192 1.673626 CCATACGTGTGGGCGTTAGTT 60.674 52.381 22.66 0.00 43.04 2.24
192 193 2.070783 CATACGTGTGGGCGTTAGTTT 58.929 47.619 4.09 0.00 43.04 2.66
193 194 2.237393 TACGTGTGGGCGTTAGTTTT 57.763 45.000 0.00 0.00 43.04 2.43
194 195 1.381522 ACGTGTGGGCGTTAGTTTTT 58.618 45.000 0.00 0.00 43.04 1.94
226 227 7.823745 TTTTTGGCTGAGAGATAACTTTCTT 57.176 32.000 0.00 0.00 0.00 2.52
227 228 8.918202 TTTTTGGCTGAGAGATAACTTTCTTA 57.082 30.769 0.00 0.00 0.00 2.10
228 229 8.918202 TTTTGGCTGAGAGATAACTTTCTTAA 57.082 30.769 0.00 0.00 0.00 1.85
229 230 8.553459 TTTGGCTGAGAGATAACTTTCTTAAG 57.447 34.615 0.00 0.00 37.40 1.85
230 231 7.482169 TGGCTGAGAGATAACTTTCTTAAGA 57.518 36.000 0.00 0.00 35.30 2.10
231 232 8.083828 TGGCTGAGAGATAACTTTCTTAAGAT 57.916 34.615 5.89 0.00 35.30 2.40
232 233 9.201989 TGGCTGAGAGATAACTTTCTTAAGATA 57.798 33.333 5.89 0.22 35.30 1.98
284 285 7.754801 TCGACGTCGAAATAAAAAGAAATTG 57.245 32.000 36.25 3.10 46.30 2.32
285 286 7.565848 TCGACGTCGAAATAAAAAGAAATTGA 58.434 30.769 36.25 8.68 46.30 2.57
286 287 8.225107 TCGACGTCGAAATAAAAAGAAATTGAT 58.775 29.630 36.25 0.00 46.30 2.57
287 288 8.297222 CGACGTCGAAATAAAAAGAAATTGATG 58.703 33.333 33.35 0.00 43.02 3.07
288 289 8.447787 ACGTCGAAATAAAAAGAAATTGATGG 57.552 30.769 0.00 0.00 0.00 3.51
498 503 0.380378 GTCTCCTACTCAGAGCAGCG 59.620 60.000 0.00 0.00 0.00 5.18
543 548 0.606604 AGTCCGTGCGTCCACTTAAT 59.393 50.000 0.00 0.00 39.86 1.40
544 549 1.001633 AGTCCGTGCGTCCACTTAATT 59.998 47.619 0.00 0.00 39.86 1.40
545 550 1.802365 GTCCGTGCGTCCACTTAATTT 59.198 47.619 0.00 0.00 39.86 1.82
546 551 2.070783 TCCGTGCGTCCACTTAATTTC 58.929 47.619 0.00 0.00 39.86 2.17
548 553 2.482721 CCGTGCGTCCACTTAATTTCTT 59.517 45.455 0.00 0.00 39.86 2.52
549 554 3.424433 CCGTGCGTCCACTTAATTTCTTC 60.424 47.826 0.00 0.00 39.86 2.87
551 556 4.434330 CGTGCGTCCACTTAATTTCTTCTC 60.434 45.833 0.00 0.00 39.86 2.87
552 557 4.000988 TGCGTCCACTTAATTTCTTCTCC 58.999 43.478 0.00 0.00 0.00 3.71
553 558 4.254492 GCGTCCACTTAATTTCTTCTCCT 58.746 43.478 0.00 0.00 0.00 3.69
554 559 4.330347 GCGTCCACTTAATTTCTTCTCCTC 59.670 45.833 0.00 0.00 0.00 3.71
556 561 4.870991 GTCCACTTAATTTCTTCTCCTCCG 59.129 45.833 0.00 0.00 0.00 4.63
557 562 3.623510 CCACTTAATTTCTTCTCCTCCGC 59.376 47.826 0.00 0.00 0.00 5.54
558 563 3.623510 CACTTAATTTCTTCTCCTCCGCC 59.376 47.826 0.00 0.00 0.00 6.13
559 564 2.596904 TAATTTCTTCTCCTCCGCCG 57.403 50.000 0.00 0.00 0.00 6.46
573 879 2.265182 CGCCGGCTTGAAAAAGGGA 61.265 57.895 26.68 0.00 0.00 4.20
596 902 1.530655 ACTTTCTTGTTGGGGGCGG 60.531 57.895 0.00 0.00 0.00 6.13
654 1004 4.910585 GCGGTGATTCGGCCCGAT 62.911 66.667 6.69 0.00 44.41 4.18
655 1005 2.661866 CGGTGATTCGGCCCGATC 60.662 66.667 6.69 7.64 44.41 3.69
656 1006 2.504032 GGTGATTCGGCCCGATCA 59.496 61.111 6.69 10.35 35.23 2.92
665 1015 1.595382 GGCCCGATCAACATCCTCG 60.595 63.158 0.00 0.00 0.00 4.63
692 1043 1.298859 CCGCTGCAGGAACAGGTAAC 61.299 60.000 17.12 0.00 38.16 2.50
717 1068 1.070821 CGCTCATCGCTCAGTTCAAA 58.929 50.000 0.00 0.00 36.13 2.69
720 1071 2.481952 GCTCATCGCTCAGTTCAAACTT 59.518 45.455 0.00 0.00 34.40 2.66
724 1075 8.635542 GCTCATCGCTCAGTTCAAACTTGAAA 62.636 42.308 6.46 0.00 41.17 2.69
732 1083 1.975660 TCAAACTTGAAACCGGGAGG 58.024 50.000 6.32 0.00 45.38 4.30
733 1084 2.088494 TCAAACTTGAAACCGGGAGGC 61.088 52.381 6.32 0.00 44.33 4.70
734 1085 4.407604 TCAAACTTGAAACCGGGAGGCT 62.408 50.000 6.32 0.00 44.33 4.58
735 1086 5.838989 TCAAACTTGAAACCGGGAGGCTT 62.839 47.826 6.32 0.00 44.33 4.35
744 1095 3.347411 CGGGAGGCTTTCTAGTTCG 57.653 57.895 0.00 0.00 0.00 3.95
745 1096 0.179108 CGGGAGGCTTTCTAGTTCGG 60.179 60.000 0.00 0.00 0.00 4.30
746 1097 0.903236 GGGAGGCTTTCTAGTTCGGT 59.097 55.000 0.00 0.00 0.00 4.69
747 1098 1.278413 GGGAGGCTTTCTAGTTCGGTT 59.722 52.381 0.00 0.00 0.00 4.44
748 1099 2.498885 GGGAGGCTTTCTAGTTCGGTTA 59.501 50.000 0.00 0.00 0.00 2.85
749 1100 3.055602 GGGAGGCTTTCTAGTTCGGTTAA 60.056 47.826 0.00 0.00 0.00 2.01
750 1101 3.931468 GGAGGCTTTCTAGTTCGGTTAAC 59.069 47.826 0.00 0.00 38.46 2.01
752 1103 5.105595 GGAGGCTTTCTAGTTCGGTTAACTA 60.106 44.000 5.42 0.00 46.85 2.24
778 1129 2.659063 GGGGCATTTGAACCAGGGC 61.659 63.158 0.00 0.00 0.00 5.19
795 1150 2.401583 GGCCAAACCCCATCAATTTC 57.598 50.000 0.00 0.00 0.00 2.17
798 1153 3.244875 GGCCAAACCCCATCAATTTCTTT 60.245 43.478 0.00 0.00 0.00 2.52
832 1187 2.802247 TCGTCATTTGATCCGATGCATC 59.198 45.455 17.10 17.10 0.00 3.91
841 1196 1.640428 TCCGATGCATCAGTTCGTTC 58.360 50.000 25.70 0.00 0.00 3.95
854 1209 4.825634 TCAGTTCGTTCCTCTGTTTCTCTA 59.174 41.667 0.00 0.00 0.00 2.43
856 1211 5.574830 CAGTTCGTTCCTCTGTTTCTCTATG 59.425 44.000 0.00 0.00 0.00 2.23
857 1212 4.111375 TCGTTCCTCTGTTTCTCTATGC 57.889 45.455 0.00 0.00 0.00 3.14
866 1222 7.604164 TCCTCTGTTTCTCTATGCTTTTTACTG 59.396 37.037 0.00 0.00 0.00 2.74
868 1224 6.710295 TCTGTTTCTCTATGCTTTTTACTGCA 59.290 34.615 0.00 0.00 43.67 4.41
872 1228 8.642020 GTTTCTCTATGCTTTTTACTGCAATTG 58.358 33.333 0.00 0.00 42.74 2.32
898 1254 7.820648 TCTGAAAGAGATCTTTTACAATTGCC 58.179 34.615 5.05 0.00 45.37 4.52
901 1306 8.950210 TGAAAGAGATCTTTTACAATTGCCTAG 58.050 33.333 5.05 0.00 45.37 3.02
919 1325 1.256812 AGAAATGGGGGTTTTCTGCG 58.743 50.000 0.00 0.00 40.86 5.18
920 1326 0.389817 GAAATGGGGGTTTTCTGCGC 60.390 55.000 0.00 0.00 31.76 6.09
923 1329 3.373565 GGGGGTTTTCTGCGCCAG 61.374 66.667 4.18 2.24 40.27 4.85
931 1337 3.181506 GGTTTTCTGCGCCAGAGATAAAG 60.182 47.826 4.18 0.00 41.75 1.85
933 1339 0.465705 TCTGCGCCAGAGATAAAGGG 59.534 55.000 4.18 0.00 35.39 3.95
937 1343 0.815615 CGCCAGAGATAAAGGGTGCC 60.816 60.000 0.00 0.00 0.00 5.01
956 1362 2.288030 GCCCTGCTACATCATTTGCATC 60.288 50.000 0.00 0.00 34.79 3.91
976 1382 7.333323 TGCATCCAGAATCGTGAATGATATAT 58.667 34.615 0.00 0.00 0.00 0.86
977 1383 7.279313 TGCATCCAGAATCGTGAATGATATATG 59.721 37.037 0.00 0.00 0.00 1.78
980 1386 8.992835 TCCAGAATCGTGAATGATATATGAAG 57.007 34.615 0.00 0.00 0.00 3.02
982 1388 7.279536 CCAGAATCGTGAATGATATATGAAGGG 59.720 40.741 0.00 0.00 0.00 3.95
985 1391 9.388506 GAATCGTGAATGATATATGAAGGGAAT 57.611 33.333 0.00 0.00 0.00 3.01
1000 1415 6.395629 TGAAGGGAATAGAAGTAGAAACACG 58.604 40.000 0.00 0.00 0.00 4.49
1024 1439 7.548075 ACGTATAAAGATGAAACAAGGACGAAT 59.452 33.333 0.00 0.00 0.00 3.34
1071 1493 2.008329 GAGTCCTCTGCATTTGCTCTG 58.992 52.381 3.94 0.00 42.66 3.35
1084 1506 1.174712 TGCTCTGCTGGTTCCAAAGC 61.175 55.000 0.00 1.55 39.96 3.51
1093 1518 4.176271 GCTGGTTCCAAAGCAAATATGTC 58.824 43.478 0.00 0.00 38.59 3.06
1100 1525 3.242870 CCAAAGCAAATATGTCGGCTCTC 60.243 47.826 0.00 0.00 35.11 3.20
1104 1529 3.070734 AGCAAATATGTCGGCTCTCATCT 59.929 43.478 0.00 0.00 28.71 2.90
1106 1531 4.375272 CAAATATGTCGGCTCTCATCTGT 58.625 43.478 0.00 0.00 0.00 3.41
1107 1532 3.932545 ATATGTCGGCTCTCATCTGTC 57.067 47.619 0.00 0.00 0.00 3.51
1108 1533 1.478631 ATGTCGGCTCTCATCTGTCA 58.521 50.000 0.00 0.00 0.00 3.58
1122 1547 8.853077 TCTCATCTGTCACAAAATCTTAATGT 57.147 30.769 0.00 0.00 0.00 2.71
1126 1551 7.036996 TCTGTCACAAAATCTTAATGTGCAA 57.963 32.000 0.00 0.00 43.15 4.08
1131 1556 6.478344 TCACAAAATCTTAATGTGCAAACCAC 59.522 34.615 0.00 0.00 43.15 4.16
1142 1567 3.561503 GTGCAAACCACGAAAATCTACC 58.438 45.455 0.00 0.00 34.22 3.18
1151 1576 5.242171 ACCACGAAAATCTACCGGAATTTTT 59.758 36.000 9.46 8.62 28.29 1.94
1169 1594 3.824001 TTTCCCTCATTCCATGGTTCA 57.176 42.857 12.58 0.00 0.00 3.18
1189 1614 7.535997 GGTTCAACACCTAATTCAAATCTACC 58.464 38.462 0.00 0.00 43.29 3.18
1217 1642 1.293924 AGCATATCTTCAGTGCGTGC 58.706 50.000 0.00 0.00 43.37 5.34
1270 1698 2.030185 AGCTTTCTTTGCAGCTGATGTG 60.030 45.455 20.43 4.33 44.98 3.21
1273 1701 4.806330 CTTTCTTTGCAGCTGATGTGAAT 58.194 39.130 20.43 0.00 0.00 2.57
1275 1703 3.414269 TCTTTGCAGCTGATGTGAATCA 58.586 40.909 20.43 0.00 0.00 2.57
1323 1768 6.037786 TGTTGATAGATCGTGTTCTCCTTT 57.962 37.500 0.00 0.00 0.00 3.11
1326 1771 2.839486 AGATCGTGTTCTCCTTTGCA 57.161 45.000 0.00 0.00 0.00 4.08
1327 1772 3.340814 AGATCGTGTTCTCCTTTGCAT 57.659 42.857 0.00 0.00 0.00 3.96
1336 1781 4.943705 TGTTCTCCTTTGCATACATCTTCC 59.056 41.667 0.00 0.00 0.00 3.46
1340 1785 4.191544 TCCTTTGCATACATCTTCCGAAG 58.808 43.478 1.30 1.30 0.00 3.79
1391 1836 3.892522 TGCGATTAATGCATGAGATTGC 58.107 40.909 16.70 16.70 43.07 3.56
1418 1931 3.129871 GCACTGAAGATATGCTGAGGTC 58.870 50.000 0.00 0.00 36.40 3.85
1423 1938 6.036953 CACTGAAGATATGCTGAGGTCTTTTC 59.963 42.308 0.00 0.00 31.51 2.29
1443 1958 7.925483 TCTTTTCATGTTCTGTTGGTTTTATGG 59.075 33.333 0.00 0.00 0.00 2.74
1444 1959 5.720371 TCATGTTCTGTTGGTTTTATGGG 57.280 39.130 0.00 0.00 0.00 4.00
1447 1962 4.798882 TGTTCTGTTGGTTTTATGGGTCT 58.201 39.130 0.00 0.00 0.00 3.85
1453 1968 5.751586 TGTTGGTTTTATGGGTCTATCCTC 58.248 41.667 0.00 0.00 36.25 3.71
1518 2047 3.489355 TCCATAATGCTGGCCAACATAG 58.511 45.455 21.67 14.03 36.16 2.23
1519 2048 3.117550 TCCATAATGCTGGCCAACATAGT 60.118 43.478 21.67 10.07 36.16 2.12
1520 2049 3.638160 CCATAATGCTGGCCAACATAGTT 59.362 43.478 21.67 10.11 0.00 2.24
1521 2050 4.099881 CCATAATGCTGGCCAACATAGTTT 59.900 41.667 21.67 9.75 0.00 2.66
1522 2051 5.395546 CCATAATGCTGGCCAACATAGTTTT 60.396 40.000 21.67 9.38 0.00 2.43
1523 2052 3.598019 ATGCTGGCCAACATAGTTTTG 57.402 42.857 20.12 0.00 0.00 2.44
1525 2054 2.961741 TGCTGGCCAACATAGTTTTGAA 59.038 40.909 7.01 0.00 0.00 2.69
1526 2055 3.577848 TGCTGGCCAACATAGTTTTGAAT 59.422 39.130 7.01 0.00 0.00 2.57
1527 2056 4.040217 TGCTGGCCAACATAGTTTTGAATT 59.960 37.500 7.01 0.00 0.00 2.17
1528 2057 4.627035 GCTGGCCAACATAGTTTTGAATTC 59.373 41.667 7.01 0.00 0.00 2.17
1529 2058 5.567423 GCTGGCCAACATAGTTTTGAATTCT 60.567 40.000 7.01 0.00 0.00 2.40
1530 2059 5.782047 TGGCCAACATAGTTTTGAATTCTG 58.218 37.500 0.61 0.00 0.00 3.02
1531 2060 5.538053 TGGCCAACATAGTTTTGAATTCTGA 59.462 36.000 0.61 0.00 0.00 3.27
1532 2061 6.041409 TGGCCAACATAGTTTTGAATTCTGAA 59.959 34.615 0.61 0.00 0.00 3.02
1533 2062 6.928492 GGCCAACATAGTTTTGAATTCTGAAA 59.072 34.615 7.05 5.37 0.00 2.69
1534 2063 7.116805 GGCCAACATAGTTTTGAATTCTGAAAG 59.883 37.037 7.05 0.11 0.00 2.62
1535 2064 7.653311 GCCAACATAGTTTTGAATTCTGAAAGT 59.347 33.333 7.05 12.20 33.76 2.66
1536 2065 9.185192 CCAACATAGTTTTGAATTCTGAAAGTC 57.815 33.333 7.05 0.00 33.76 3.01
1573 2102 8.902806 TGTACATAATTCATGTCCCATCTTTTC 58.097 33.333 0.00 0.00 44.99 2.29
1574 2103 7.031226 ACATAATTCATGTCCCATCTTTTCG 57.969 36.000 0.00 0.00 44.99 3.46
1616 2145 1.743394 GGAGACCGCAAAATTAGTGGG 59.257 52.381 13.20 7.11 40.93 4.61
1619 2148 1.471287 GACCGCAAAATTAGTGGGTCC 59.529 52.381 13.20 0.00 40.93 4.46
1624 2153 1.743394 CAAAATTAGTGGGTCCGAGCC 59.257 52.381 9.85 9.85 36.00 4.70
1625 2154 0.988832 AAATTAGTGGGTCCGAGCCA 59.011 50.000 15.50 15.50 44.64 4.75
1634 2163 2.117423 TCCGAGCCACAGTCTCCA 59.883 61.111 0.00 0.00 0.00 3.86
1665 2194 1.086634 GGAGCATGCTCAACCTCGTC 61.087 60.000 40.37 21.85 44.40 4.20
1667 2196 0.251354 AGCATGCTCAACCTCGTCAT 59.749 50.000 16.30 0.00 0.00 3.06
1688 2217 1.195448 CGCAAAGACGATGAGCAGTTT 59.805 47.619 0.00 0.00 34.06 2.66
1724 2253 1.671845 GGTGTTCTTGTTAACGTGCCA 59.328 47.619 0.26 0.00 31.76 4.92
1784 2313 0.617413 ACCACTTGAGGGATCAGCTG 59.383 55.000 7.63 7.63 0.00 4.24
1841 2370 1.154112 CAAACGCAACGGCCATACC 60.154 57.895 2.24 0.00 36.38 2.73
1876 2405 4.137543 GTGGAGTTCACAAAAGACTGGAT 58.862 43.478 0.00 0.00 45.39 3.41
1921 2450 5.769662 ACTTTGAATATCACTTTGAGGCACA 59.230 36.000 0.00 0.00 0.00 4.57
2167 2696 2.072298 GCAAGAGCTTGAACACGAGAT 58.928 47.619 14.04 0.00 42.93 2.75
2187 2716 3.636282 TCAATCGAACGACTCAGTTGA 57.364 42.857 0.00 2.91 34.00 3.18
2198 2727 3.010420 GACTCAGTTGATTGGTAAGGCC 58.990 50.000 0.00 0.00 37.90 5.19
2201 2730 2.238646 TCAGTTGATTGGTAAGGCCGAT 59.761 45.455 0.00 0.00 44.07 4.18
2208 2737 1.507140 TGGTAAGGCCGATGAGGATT 58.493 50.000 0.00 0.00 45.00 3.01
2307 2836 4.428615 CACATGTGCAATTCTGTCATGA 57.571 40.909 13.94 0.00 38.80 3.07
2372 2901 9.747898 TTATACCAGAAATTCACCAAATACAGT 57.252 29.630 0.00 0.00 0.00 3.55
2374 2903 9.747898 ATACCAGAAATTCACCAAATACAGTTA 57.252 29.630 0.00 0.00 0.00 2.24
2375 2904 7.882179 ACCAGAAATTCACCAAATACAGTTAC 58.118 34.615 0.00 0.00 0.00 2.50
2377 2906 8.356657 CCAGAAATTCACCAAATACAGTTACAA 58.643 33.333 0.00 0.00 0.00 2.41
2378 2907 9.398170 CAGAAATTCACCAAATACAGTTACAAG 57.602 33.333 0.00 0.00 0.00 3.16
2379 2908 9.349713 AGAAATTCACCAAATACAGTTACAAGA 57.650 29.630 0.00 0.00 0.00 3.02
2380 2909 9.959749 GAAATTCACCAAATACAGTTACAAGAA 57.040 29.630 0.00 0.00 0.00 2.52
2381 2910 9.744468 AAATTCACCAAATACAGTTACAAGAAC 57.256 29.630 0.00 0.00 0.00 3.01
2382 2911 8.691661 ATTCACCAAATACAGTTACAAGAACT 57.308 30.769 0.00 0.00 0.00 3.01
2383 2912 9.787435 ATTCACCAAATACAGTTACAAGAACTA 57.213 29.630 0.00 0.00 0.00 2.24
2384 2913 8.827177 TCACCAAATACAGTTACAAGAACTAG 57.173 34.615 0.00 0.00 0.00 2.57
2385 2914 7.386848 TCACCAAATACAGTTACAAGAACTAGC 59.613 37.037 0.00 0.00 0.00 3.42
2428 2996 5.393027 GGTGTGTGACATCTTGTTTCTTGTT 60.393 40.000 0.00 0.00 0.00 2.83
2471 3041 7.545265 TGAATGTGAAGTTTGTTTCCTTTTCTG 59.455 33.333 0.00 0.00 0.00 3.02
2560 3130 8.399425 CACAGTTGTTGTACATTTTAGTTACCA 58.601 33.333 0.00 0.00 38.16 3.25
2659 3240 4.870123 ACAAAAGACATGCATTTAGCCA 57.130 36.364 0.00 0.00 44.83 4.75
2774 3355 6.220930 ACTGTACACATAACTGACGTCAATT 58.779 36.000 20.49 18.75 0.00 2.32
2951 3533 5.185828 GGTAAAATGCAGAGGGAGACAAAAT 59.814 40.000 0.00 0.00 0.00 1.82
3092 3674 9.726438 AGGAAATTTCGAAGAAGAAGAGAATAA 57.274 29.630 11.95 0.00 45.90 1.40
3292 3875 2.959516 TGTTGTCGATGATGACCTGTC 58.040 47.619 0.00 0.00 38.11 3.51
3293 3876 2.271800 GTTGTCGATGATGACCTGTCC 58.728 52.381 0.00 0.00 38.11 4.02
3391 3974 3.515901 GGGTCGAGGAAATATAGGCATCT 59.484 47.826 0.00 0.00 0.00 2.90
3411 3994 8.907885 GGCATCTAAAGAATAGGAAAACTTGAT 58.092 33.333 0.00 0.00 0.00 2.57
3563 4146 2.038033 CGGTACCCACTTCCTTTTCTCA 59.962 50.000 6.25 0.00 0.00 3.27
3607 4190 6.573434 AGTTTTCAATTTCTTGGTGGACTTC 58.427 36.000 0.00 0.00 32.95 3.01
3627 4210 5.295787 ACTTCTAGTTGTTGCGAACATTTCA 59.704 36.000 3.15 0.00 41.79 2.69
3684 4267 5.238583 CCTAAATTTCTCGGTGTTCTGTCT 58.761 41.667 0.00 0.00 0.00 3.41
3890 4638 6.301169 TGGAAAGTGGTTTTGTATTTTGGT 57.699 33.333 0.00 0.00 0.00 3.67
4109 4868 5.998363 GTGATTCTACCAACAGAGAACCTTT 59.002 40.000 0.00 0.00 34.61 3.11
4176 4939 9.998106 ACATAAACTTGATTAGTGTAGAACTGT 57.002 29.630 0.00 0.00 40.26 3.55
4199 4962 4.274978 AGATGCACATGAATCAACCATGA 58.725 39.130 0.00 0.00 42.89 3.07
4209 4972 6.566079 TGAATCAACCATGATCTAGGTCTT 57.434 37.500 4.28 0.00 45.60 3.01
4215 4978 1.072965 CATGATCTAGGTCTTGGGGGC 59.927 57.143 10.39 0.00 0.00 5.80
4302 5066 7.898309 CCGATAAGAGTCAAACAAGAATTTACG 59.102 37.037 0.00 0.00 0.00 3.18
4425 5189 4.706842 TTAATACTTCTCCATGGCCCTC 57.293 45.455 6.96 0.00 0.00 4.30
4511 5275 4.080582 TCTGAAATCGTGACCCAATACCAT 60.081 41.667 0.00 0.00 0.00 3.55
4519 5283 2.846206 TGACCCAATACCATTGCTCTCT 59.154 45.455 0.00 0.00 0.00 3.10
4520 5284 4.037222 TGACCCAATACCATTGCTCTCTA 58.963 43.478 0.00 0.00 0.00 2.43
4527 5291 7.147846 CCCAATACCATTGCTCTCTAAAAACAT 60.148 37.037 0.00 0.00 0.00 2.71
4615 5654 7.698130 CCTTTAGTAAAAGAATTCCAATCTGCG 59.302 37.037 0.65 0.00 44.14 5.18
4640 5679 4.025061 GCATGCAGTCATATGAGTCAACTC 60.025 45.833 14.21 3.13 43.15 3.01
4643 5682 4.118410 GCAGTCATATGAGTCAACTCTGG 58.882 47.826 10.23 0.00 43.25 3.86
4665 5704 6.423182 TGGTGTAGGAAATTATTTCTCAGGG 58.577 40.000 16.02 0.00 39.59 4.45
4690 5729 6.881602 GTGATGAGAAGGTCCAAGAACTAAAT 59.118 38.462 0.00 0.00 0.00 1.40
4691 5730 8.041323 GTGATGAGAAGGTCCAAGAACTAAATA 58.959 37.037 0.00 0.00 0.00 1.40
4692 5731 8.772250 TGATGAGAAGGTCCAAGAACTAAATAT 58.228 33.333 0.00 0.00 0.00 1.28
4693 5732 9.267084 GATGAGAAGGTCCAAGAACTAAATATC 57.733 37.037 0.00 0.00 0.00 1.63
4694 5733 8.146053 TGAGAAGGTCCAAGAACTAAATATCA 57.854 34.615 0.00 0.00 0.00 2.15
4695 5734 8.041323 TGAGAAGGTCCAAGAACTAAATATCAC 58.959 37.037 0.00 0.00 0.00 3.06
4698 5737 6.116126 AGGTCCAAGAACTAAATATCACTGC 58.884 40.000 0.00 0.00 0.00 4.40
4699 5738 5.006746 GGTCCAAGAACTAAATATCACTGCG 59.993 44.000 0.00 0.00 0.00 5.18
4700 5739 5.581085 GTCCAAGAACTAAATATCACTGCGT 59.419 40.000 0.00 0.00 0.00 5.24
4701 5740 6.092259 GTCCAAGAACTAAATATCACTGCGTT 59.908 38.462 0.00 0.00 0.00 4.84
4705 5744 8.840867 CAAGAACTAAATATCACTGCGTTTTTC 58.159 33.333 0.00 0.00 0.00 2.29
4724 5763 8.788813 CGTTTTTCTATTTGTCATGCAGAATAC 58.211 33.333 0.00 0.00 0.00 1.89
5015 6055 0.734889 AAAGGCGCTGGATGAAATCG 59.265 50.000 7.64 0.00 46.86 3.34
5041 6081 0.668535 ACAAGCCTTTTGCCGAAGAC 59.331 50.000 0.00 0.00 42.71 3.01
5058 6098 4.081642 CGAAGACCAAGGTGGAGAAATCTA 60.082 45.833 0.18 0.00 40.96 1.98
5142 6182 1.483415 GTACGCCCTGGATAAGTGGAA 59.517 52.381 0.00 0.00 0.00 3.53
5167 6207 1.490574 ATAAGAGGAAGCGCTGAGGT 58.509 50.000 12.58 0.00 0.00 3.85
5176 6216 0.752009 AGCGCTGAGGTCCGAATCTA 60.752 55.000 10.39 0.00 0.00 1.98
5183 6223 3.886505 CTGAGGTCCGAATCTAGCTTAGT 59.113 47.826 0.00 0.00 0.00 2.24
5184 6224 5.045012 TGAGGTCCGAATCTAGCTTAGTA 57.955 43.478 0.00 0.00 0.00 1.82
5186 6226 6.069331 TGAGGTCCGAATCTAGCTTAGTATT 58.931 40.000 0.00 0.00 0.00 1.89
5193 6233 9.516546 TCCGAATCTAGCTTAGTATTCTTCATA 57.483 33.333 0.00 0.00 0.00 2.15
5200 6240 9.347934 CTAGCTTAGTATTCTTCATATGTTCCG 57.652 37.037 1.90 0.00 0.00 4.30
5215 6255 2.728922 GTTCCGCTGAACTAGTATCGG 58.271 52.381 13.17 14.87 46.03 4.18
5219 6259 2.615447 CCGCTGAACTAGTATCGGTGTA 59.385 50.000 18.12 0.00 32.92 2.90
5233 6273 4.695217 TCGGTGTAATTTTGCCTGAATC 57.305 40.909 0.00 0.00 0.00 2.52
5234 6274 4.075682 TCGGTGTAATTTTGCCTGAATCA 58.924 39.130 0.00 0.00 0.00 2.57
5235 6275 4.704540 TCGGTGTAATTTTGCCTGAATCAT 59.295 37.500 0.00 0.00 0.00 2.45
5236 6276 5.036737 CGGTGTAATTTTGCCTGAATCATC 58.963 41.667 0.00 0.00 0.00 2.92
5256 6296 4.322080 TCAGATAGTTTATCGGCTGTGG 57.678 45.455 0.00 0.00 40.12 4.17
5260 6300 0.541863 AGTTTATCGGCTGTGGAGGG 59.458 55.000 0.00 0.00 0.00 4.30
5262 6302 0.912487 TTTATCGGCTGTGGAGGGGT 60.912 55.000 0.00 0.00 0.00 4.95
5268 6308 1.298014 GCTGTGGAGGGGTTCTCTG 59.702 63.158 0.00 0.00 42.10 3.35
5272 6312 1.353091 GTGGAGGGGTTCTCTGTTCT 58.647 55.000 0.00 0.00 42.10 3.01
5308 6357 6.027749 GTCGGACATGTTTTGGTTGATATTC 58.972 40.000 0.00 0.00 0.00 1.75
5412 6462 3.681417 TCGTCAGCTCTTGAATGATGTTG 59.319 43.478 0.00 0.00 37.61 3.33
5426 6476 6.481313 TGAATGATGTTGCTCATAGCTAGAAC 59.519 38.462 0.00 0.00 42.97 3.01
5436 6486 5.768317 CTCATAGCTAGAACCTTCTGCTAC 58.232 45.833 15.45 0.00 41.75 3.58
5444 6496 2.841442 ACCTTCTGCTACTGTGTTCC 57.159 50.000 0.00 0.00 0.00 3.62
5462 6514 7.619965 TGTGTTCCATATGTTTGTGAGATCTA 58.380 34.615 0.00 0.00 0.00 1.98
5467 6519 9.551734 TTCCATATGTTTGTGAGATCTAGAATG 57.448 33.333 0.00 0.00 0.00 2.67
5475 6527 6.094193 TGTGAGATCTAGAATGGCTACATG 57.906 41.667 0.00 0.00 37.40 3.21
5476 6528 5.835280 TGTGAGATCTAGAATGGCTACATGA 59.165 40.000 0.00 0.00 37.40 3.07
5477 6529 6.324770 TGTGAGATCTAGAATGGCTACATGAA 59.675 38.462 0.00 0.00 37.40 2.57
5478 6530 6.644592 GTGAGATCTAGAATGGCTACATGAAC 59.355 42.308 0.00 0.00 37.40 3.18
5479 6531 5.777802 AGATCTAGAATGGCTACATGAACG 58.222 41.667 0.00 0.00 37.40 3.95
5480 6532 4.322080 TCTAGAATGGCTACATGAACGG 57.678 45.455 0.00 0.00 37.40 4.44
5481 6533 3.958147 TCTAGAATGGCTACATGAACGGA 59.042 43.478 0.00 0.00 37.40 4.69
5482 6534 3.845781 AGAATGGCTACATGAACGGAT 57.154 42.857 0.00 0.00 37.40 4.18
5510 6562 5.050644 TGCAACTCAAAATGCAGATGTAG 57.949 39.130 0.00 0.00 46.87 2.74
5523 6575 3.118592 GCAGATGTAGAGGCAGGTAAAGT 60.119 47.826 0.00 0.00 0.00 2.66
5529 6581 4.589798 TGTAGAGGCAGGTAAAGTTGTACA 59.410 41.667 0.00 0.00 0.00 2.90
5537 6589 6.111768 CAGGTAAAGTTGTACATGCATCTC 57.888 41.667 0.00 0.00 29.97 2.75
5540 6592 5.590259 GGTAAAGTTGTACATGCATCTCCAT 59.410 40.000 0.00 0.00 0.00 3.41
5556 6608 0.458669 CCATGCAAACCATCCTGCTC 59.541 55.000 0.00 0.00 39.38 4.26
5617 6669 4.308899 TCTTCTAGTATTTGGCTCTCGC 57.691 45.455 0.00 0.00 0.00 5.03
5637 6689 1.134220 CCTTGGGCGCCTATCTTTGTA 60.134 52.381 28.56 1.41 0.00 2.41
5644 6697 4.499188 GGGCGCCTATCTTTGTAATTTTCC 60.499 45.833 28.56 0.00 0.00 3.13
5658 6711 1.886422 TTTTCCTTTTTGCACCCCCT 58.114 45.000 0.00 0.00 0.00 4.79
5659 6712 1.127343 TTTCCTTTTTGCACCCCCTG 58.873 50.000 0.00 0.00 0.00 4.45
5661 6714 2.743060 CTTTTTGCACCCCCTGCC 59.257 61.111 0.00 0.00 46.51 4.85
5662 6715 2.041508 TTTTTGCACCCCCTGCCA 60.042 55.556 0.00 0.00 46.51 4.92
5663 6716 2.103339 CTTTTTGCACCCCCTGCCAG 62.103 60.000 0.00 0.00 46.51 4.85
5664 6717 2.887738 TTTTTGCACCCCCTGCCAGT 62.888 55.000 0.00 0.00 46.51 4.00
5665 6718 3.808218 TTTGCACCCCCTGCCAGTC 62.808 63.158 0.00 0.00 46.51 3.51
5667 6720 3.009115 GCACCCCCTGCCAGTCTA 61.009 66.667 0.00 0.00 40.42 2.59
5672 6727 0.758685 CCCCCTGCCAGTCTAGAGAG 60.759 65.000 0.00 0.00 0.00 3.20
5706 6761 8.665643 AAAAGCTAGATGATTGAGATTCAGAG 57.334 34.615 0.00 0.00 0.00 3.35
5707 6762 7.600231 AAGCTAGATGATTGAGATTCAGAGA 57.400 36.000 0.00 0.00 0.00 3.10
5748 6803 5.596845 TCGGGAAAACAATCCAAAGAAAAG 58.403 37.500 0.00 0.00 41.55 2.27
5749 6804 4.211164 CGGGAAAACAATCCAAAGAAAAGC 59.789 41.667 0.00 0.00 41.55 3.51
5750 6805 5.122519 GGGAAAACAATCCAAAGAAAAGCA 58.877 37.500 0.00 0.00 41.55 3.91
5751 6806 5.764686 GGGAAAACAATCCAAAGAAAAGCAT 59.235 36.000 0.00 0.00 41.55 3.79
5752 6807 6.934083 GGGAAAACAATCCAAAGAAAAGCATA 59.066 34.615 0.00 0.00 41.55 3.14
5753 6808 7.118245 GGGAAAACAATCCAAAGAAAAGCATAG 59.882 37.037 0.00 0.00 41.55 2.23
5754 6809 7.657354 GGAAAACAATCCAAAGAAAAGCATAGT 59.343 33.333 0.00 0.00 39.42 2.12
5755 6810 9.691362 GAAAACAATCCAAAGAAAAGCATAGTA 57.309 29.630 0.00 0.00 0.00 1.82
6033 7089 2.094286 AGAGCGAACAGAGAGGAACATG 60.094 50.000 0.00 0.00 0.00 3.21
6237 7293 2.584608 CACCAAGGGGGCTACTCG 59.415 66.667 0.00 0.00 42.05 4.18
6351 7407 4.195416 TGTCACTGAACAAACATACAGCA 58.805 39.130 0.00 0.00 34.25 4.41
6520 7576 4.260334 GCAACTGAACAAAACAAGGAATGC 60.260 41.667 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.411652 GTTTCATCATTAAATCCGTCTCGAC 58.588 40.000 0.00 0.00 0.00 4.20
13 14 5.231357 CGTTTCATCATTAAATCCGTCTCGA 59.769 40.000 0.00 0.00 0.00 4.04
14 15 5.423717 CGTTTCATCATTAAATCCGTCTCG 58.576 41.667 0.00 0.00 0.00 4.04
15 16 5.522460 TCCGTTTCATCATTAAATCCGTCTC 59.478 40.000 0.00 0.00 0.00 3.36
16 17 5.424757 TCCGTTTCATCATTAAATCCGTCT 58.575 37.500 0.00 0.00 0.00 4.18
17 18 5.728351 TCCGTTTCATCATTAAATCCGTC 57.272 39.130 0.00 0.00 0.00 4.79
18 19 6.693315 AATCCGTTTCATCATTAAATCCGT 57.307 33.333 0.00 0.00 0.00 4.69
19 20 7.985634 AAAATCCGTTTCATCATTAAATCCG 57.014 32.000 0.00 0.00 0.00 4.18
26 27 9.801873 ATCGAATTAAAAATCCGTTTCATCATT 57.198 25.926 0.00 0.00 0.00 2.57
27 28 9.450807 GATCGAATTAAAAATCCGTTTCATCAT 57.549 29.630 0.00 0.00 0.00 2.45
28 29 8.673711 AGATCGAATTAAAAATCCGTTTCATCA 58.326 29.630 0.00 0.00 0.00 3.07
29 30 9.503427 AAGATCGAATTAAAAATCCGTTTCATC 57.497 29.630 0.00 0.00 0.00 2.92
30 31 9.855021 AAAGATCGAATTAAAAATCCGTTTCAT 57.145 25.926 0.00 0.00 0.00 2.57
31 32 9.685828 AAAAGATCGAATTAAAAATCCGTTTCA 57.314 25.926 0.00 0.00 0.00 2.69
72 73 6.905544 TTTCGGTTTTCGGCTTAAATTTTT 57.094 29.167 0.00 0.00 39.77 1.94
73 74 6.757478 TCTTTTCGGTTTTCGGCTTAAATTTT 59.243 30.769 0.00 0.00 39.77 1.82
74 75 6.274579 TCTTTTCGGTTTTCGGCTTAAATTT 58.725 32.000 0.00 0.00 39.77 1.82
75 76 5.834169 TCTTTTCGGTTTTCGGCTTAAATT 58.166 33.333 0.00 0.00 39.77 1.82
76 77 5.441709 TCTTTTCGGTTTTCGGCTTAAAT 57.558 34.783 0.00 0.00 39.77 1.40
77 78 4.897025 TCTTTTCGGTTTTCGGCTTAAA 57.103 36.364 0.00 0.00 39.77 1.52
78 79 5.441709 AATCTTTTCGGTTTTCGGCTTAA 57.558 34.783 0.00 0.00 39.77 1.85
79 80 4.083164 GGAATCTTTTCGGTTTTCGGCTTA 60.083 41.667 0.00 0.00 39.77 3.09
80 81 3.305131 GGAATCTTTTCGGTTTTCGGCTT 60.305 43.478 0.00 0.00 39.77 4.35
81 82 2.228103 GGAATCTTTTCGGTTTTCGGCT 59.772 45.455 0.00 0.00 39.77 5.52
82 83 2.228103 AGGAATCTTTTCGGTTTTCGGC 59.772 45.455 0.00 0.00 39.77 5.54
83 84 3.119955 GGAGGAATCTTTTCGGTTTTCGG 60.120 47.826 0.00 0.00 39.77 4.30
84 85 3.751698 AGGAGGAATCTTTTCGGTTTTCG 59.248 43.478 0.00 0.00 40.90 3.46
85 86 6.812879 TTAGGAGGAATCTTTTCGGTTTTC 57.187 37.500 0.00 0.00 32.28 2.29
86 87 6.719829 ACATTAGGAGGAATCTTTTCGGTTTT 59.280 34.615 0.00 0.00 32.28 2.43
87 88 6.246163 ACATTAGGAGGAATCTTTTCGGTTT 58.754 36.000 0.00 0.00 32.28 3.27
88 89 5.816682 ACATTAGGAGGAATCTTTTCGGTT 58.183 37.500 0.00 0.00 32.28 4.44
89 90 5.045869 TGACATTAGGAGGAATCTTTTCGGT 60.046 40.000 0.00 0.00 32.28 4.69
90 91 5.428253 TGACATTAGGAGGAATCTTTTCGG 58.572 41.667 0.00 0.00 32.28 4.30
91 92 6.989169 AGATGACATTAGGAGGAATCTTTTCG 59.011 38.462 0.00 0.00 32.28 3.46
92 93 7.772757 ACAGATGACATTAGGAGGAATCTTTTC 59.227 37.037 0.00 0.00 0.00 2.29
93 94 7.637511 ACAGATGACATTAGGAGGAATCTTTT 58.362 34.615 0.00 0.00 0.00 2.27
94 95 7.205515 ACAGATGACATTAGGAGGAATCTTT 57.794 36.000 0.00 0.00 0.00 2.52
95 96 6.821616 ACAGATGACATTAGGAGGAATCTT 57.178 37.500 0.00 0.00 0.00 2.40
96 97 6.821616 AACAGATGACATTAGGAGGAATCT 57.178 37.500 0.00 0.00 0.00 2.40
97 98 7.987458 TGTAAACAGATGACATTAGGAGGAATC 59.013 37.037 0.00 0.00 0.00 2.52
98 99 7.861629 TGTAAACAGATGACATTAGGAGGAAT 58.138 34.615 0.00 0.00 0.00 3.01
99 100 7.252612 TGTAAACAGATGACATTAGGAGGAA 57.747 36.000 0.00 0.00 0.00 3.36
100 101 6.867519 TGTAAACAGATGACATTAGGAGGA 57.132 37.500 0.00 0.00 0.00 3.71
101 102 7.011763 CACATGTAAACAGATGACATTAGGAGG 59.988 40.741 0.00 0.00 31.44 4.30
102 103 7.011763 CCACATGTAAACAGATGACATTAGGAG 59.988 40.741 0.00 0.00 31.44 3.69
103 104 6.823182 CCACATGTAAACAGATGACATTAGGA 59.177 38.462 0.00 0.00 31.44 2.94
104 105 6.458751 GCCACATGTAAACAGATGACATTAGG 60.459 42.308 0.00 0.00 31.44 2.69
105 106 6.093909 TGCCACATGTAAACAGATGACATTAG 59.906 38.462 0.00 0.00 31.44 1.73
106 107 5.942826 TGCCACATGTAAACAGATGACATTA 59.057 36.000 0.00 0.00 31.44 1.90
107 108 4.766373 TGCCACATGTAAACAGATGACATT 59.234 37.500 0.00 0.00 31.44 2.71
108 109 4.334552 TGCCACATGTAAACAGATGACAT 58.665 39.130 0.00 0.00 34.11 3.06
109 110 3.749226 TGCCACATGTAAACAGATGACA 58.251 40.909 0.00 0.00 0.00 3.58
110 111 4.764679 TTGCCACATGTAAACAGATGAC 57.235 40.909 0.00 0.00 0.00 3.06
111 112 5.781210 TTTTGCCACATGTAAACAGATGA 57.219 34.783 0.00 0.00 0.00 2.92
112 113 6.157904 TCATTTTGCCACATGTAAACAGATG 58.842 36.000 0.00 6.14 0.00 2.90
113 114 6.015180 ACTCATTTTGCCACATGTAAACAGAT 60.015 34.615 0.00 0.00 0.00 2.90
114 115 5.301551 ACTCATTTTGCCACATGTAAACAGA 59.698 36.000 0.00 0.00 0.00 3.41
115 116 5.403166 CACTCATTTTGCCACATGTAAACAG 59.597 40.000 0.00 0.00 0.00 3.16
116 117 5.288015 CACTCATTTTGCCACATGTAAACA 58.712 37.500 0.00 0.00 0.00 2.83
117 118 4.685628 CCACTCATTTTGCCACATGTAAAC 59.314 41.667 0.00 0.00 0.00 2.01
118 119 4.343526 ACCACTCATTTTGCCACATGTAAA 59.656 37.500 0.00 0.00 0.00 2.01
119 120 3.894427 ACCACTCATTTTGCCACATGTAA 59.106 39.130 0.00 0.00 0.00 2.41
120 121 3.495331 ACCACTCATTTTGCCACATGTA 58.505 40.909 0.00 0.00 0.00 2.29
121 122 2.318908 ACCACTCATTTTGCCACATGT 58.681 42.857 0.00 0.00 0.00 3.21
122 123 4.517952 TTACCACTCATTTTGCCACATG 57.482 40.909 0.00 0.00 0.00 3.21
123 124 5.543507 TTTTACCACTCATTTTGCCACAT 57.456 34.783 0.00 0.00 0.00 3.21
124 125 5.127845 TCTTTTTACCACTCATTTTGCCACA 59.872 36.000 0.00 0.00 0.00 4.17
125 126 5.462068 GTCTTTTTACCACTCATTTTGCCAC 59.538 40.000 0.00 0.00 0.00 5.01
126 127 5.127845 TGTCTTTTTACCACTCATTTTGCCA 59.872 36.000 0.00 0.00 0.00 4.92
127 128 5.596845 TGTCTTTTTACCACTCATTTTGCC 58.403 37.500 0.00 0.00 0.00 4.52
128 129 6.701400 ACATGTCTTTTTACCACTCATTTTGC 59.299 34.615 0.00 0.00 0.00 3.68
129 130 7.169645 CCACATGTCTTTTTACCACTCATTTTG 59.830 37.037 0.00 0.00 0.00 2.44
130 131 7.209475 CCACATGTCTTTTTACCACTCATTTT 58.791 34.615 0.00 0.00 0.00 1.82
131 132 6.239289 CCCACATGTCTTTTTACCACTCATTT 60.239 38.462 0.00 0.00 0.00 2.32
132 133 5.243730 CCCACATGTCTTTTTACCACTCATT 59.756 40.000 0.00 0.00 0.00 2.57
133 134 4.766891 CCCACATGTCTTTTTACCACTCAT 59.233 41.667 0.00 0.00 0.00 2.90
134 135 4.141287 CCCACATGTCTTTTTACCACTCA 58.859 43.478 0.00 0.00 0.00 3.41
135 136 3.057526 GCCCACATGTCTTTTTACCACTC 60.058 47.826 0.00 0.00 0.00 3.51
136 137 2.890945 GCCCACATGTCTTTTTACCACT 59.109 45.455 0.00 0.00 0.00 4.00
137 138 2.351350 CGCCCACATGTCTTTTTACCAC 60.351 50.000 0.00 0.00 0.00 4.16
138 139 1.883275 CGCCCACATGTCTTTTTACCA 59.117 47.619 0.00 0.00 0.00 3.25
139 140 2.156098 TCGCCCACATGTCTTTTTACC 58.844 47.619 0.00 0.00 0.00 2.85
140 141 3.190535 ACATCGCCCACATGTCTTTTTAC 59.809 43.478 0.00 0.00 27.49 2.01
141 142 3.190327 CACATCGCCCACATGTCTTTTTA 59.810 43.478 0.00 0.00 31.83 1.52
142 143 2.030007 CACATCGCCCACATGTCTTTTT 60.030 45.455 0.00 0.00 31.83 1.94
143 144 1.541147 CACATCGCCCACATGTCTTTT 59.459 47.619 0.00 0.00 31.83 2.27
144 145 1.167851 CACATCGCCCACATGTCTTT 58.832 50.000 0.00 0.00 31.83 2.52
145 146 1.308069 GCACATCGCCCACATGTCTT 61.308 55.000 0.00 0.00 31.83 3.01
146 147 1.746615 GCACATCGCCCACATGTCT 60.747 57.895 0.00 0.00 31.83 3.41
147 148 1.585267 TTGCACATCGCCCACATGTC 61.585 55.000 0.00 0.00 41.33 3.06
148 149 1.177895 TTTGCACATCGCCCACATGT 61.178 50.000 0.00 0.00 41.33 3.21
149 150 0.038435 TTTTGCACATCGCCCACATG 60.038 50.000 0.00 0.00 41.33 3.21
150 151 0.896923 ATTTTGCACATCGCCCACAT 59.103 45.000 0.00 0.00 41.33 3.21
151 152 0.038435 CATTTTGCACATCGCCCACA 60.038 50.000 0.00 0.00 41.33 4.17
152 153 1.353609 GCATTTTGCACATCGCCCAC 61.354 55.000 0.00 0.00 44.26 4.61
153 154 1.079956 GCATTTTGCACATCGCCCA 60.080 52.632 0.00 0.00 44.26 5.36
154 155 3.784746 GCATTTTGCACATCGCCC 58.215 55.556 0.00 0.00 44.26 6.13
163 164 1.627879 CCACACGTATGGCATTTTGC 58.372 50.000 4.78 0.00 44.08 3.68
164 165 1.735369 GCCCACACGTATGGCATTTTG 60.735 52.381 7.55 3.14 44.70 2.44
165 166 0.530288 GCCCACACGTATGGCATTTT 59.470 50.000 7.55 0.00 44.70 1.82
166 167 1.653094 CGCCCACACGTATGGCATTT 61.653 55.000 7.55 0.00 45.63 2.32
167 168 2.112198 CGCCCACACGTATGGCATT 61.112 57.895 7.55 0.00 45.63 3.56
168 169 2.513666 CGCCCACACGTATGGCAT 60.514 61.111 7.55 4.88 45.63 4.40
169 170 4.010224 ACGCCCACACGTATGGCA 62.010 61.111 7.55 0.00 46.19 4.92
202 203 7.823745 AAGAAAGTTATCTCTCAGCCAAAAA 57.176 32.000 0.00 0.00 0.00 1.94
203 204 8.918202 TTAAGAAAGTTATCTCTCAGCCAAAA 57.082 30.769 0.00 0.00 0.00 2.44
204 205 8.375506 TCTTAAGAAAGTTATCTCTCAGCCAAA 58.624 33.333 1.68 0.00 34.13 3.28
205 206 7.907389 TCTTAAGAAAGTTATCTCTCAGCCAA 58.093 34.615 1.68 0.00 34.13 4.52
206 207 7.482169 TCTTAAGAAAGTTATCTCTCAGCCA 57.518 36.000 1.68 0.00 34.13 4.75
261 262 7.754801 TCAATTTCTTTTTATTTCGACGTCG 57.245 32.000 31.30 31.30 41.45 5.12
262 263 8.575454 CCATCAATTTCTTTTTATTTCGACGTC 58.425 33.333 5.18 5.18 0.00 4.34
263 264 7.061789 GCCATCAATTTCTTTTTATTTCGACGT 59.938 33.333 0.00 0.00 0.00 4.34
264 265 7.061673 TGCCATCAATTTCTTTTTATTTCGACG 59.938 33.333 0.00 0.00 0.00 5.12
265 266 8.238481 TGCCATCAATTTCTTTTTATTTCGAC 57.762 30.769 0.00 0.00 0.00 4.20
266 267 8.303156 TCTGCCATCAATTTCTTTTTATTTCGA 58.697 29.630 0.00 0.00 0.00 3.71
267 268 8.464770 TCTGCCATCAATTTCTTTTTATTTCG 57.535 30.769 0.00 0.00 0.00 3.46
282 283 9.806203 CAGAACAATATTTTATTCTGCCATCAA 57.194 29.630 15.70 0.00 41.03 2.57
397 398 7.586300 CACTGTGTCCTCGTATTTTACTTTTTG 59.414 37.037 0.00 0.00 0.00 2.44
403 404 5.224888 TCACACTGTGTCCTCGTATTTTAC 58.775 41.667 11.12 0.00 34.79 2.01
415 417 4.044426 GCTTTTTCCATTCACACTGTGTC 58.956 43.478 11.12 0.00 34.79 3.67
498 503 5.390567 CCAATCAGTAACCGAAGCACTTAAC 60.391 44.000 0.00 0.00 0.00 2.01
543 548 2.978824 CCGGCGGAGGAGAAGAAA 59.021 61.111 24.41 0.00 0.00 2.52
544 549 3.771160 GCCGGCGGAGGAGAAGAA 61.771 66.667 33.44 0.00 0.00 2.52
545 550 4.761058 AGCCGGCGGAGGAGAAGA 62.761 66.667 33.44 0.00 0.00 2.87
546 551 3.775654 AAGCCGGCGGAGGAGAAG 61.776 66.667 33.44 0.00 0.00 2.85
549 554 3.605749 TTTCAAGCCGGCGGAGGAG 62.606 63.158 33.44 15.86 0.00 3.69
551 556 2.200170 CTTTTTCAAGCCGGCGGAGG 62.200 60.000 33.44 17.90 0.00 4.30
552 557 1.210155 CTTTTTCAAGCCGGCGGAG 59.790 57.895 33.44 18.63 0.00 4.63
553 558 2.265182 CCTTTTTCAAGCCGGCGGA 61.265 57.895 33.44 20.37 0.00 5.54
554 559 2.258286 CCTTTTTCAAGCCGGCGG 59.742 61.111 24.35 24.35 0.00 6.13
556 561 1.586541 CTCCCTTTTTCAAGCCGGC 59.413 57.895 21.89 21.89 0.00 6.13
557 562 1.178534 TGCTCCCTTTTTCAAGCCGG 61.179 55.000 0.00 0.00 33.79 6.13
558 563 0.039165 GTGCTCCCTTTTTCAAGCCG 60.039 55.000 0.00 0.00 33.79 5.52
559 564 1.039856 TGTGCTCCCTTTTTCAAGCC 58.960 50.000 0.00 0.00 33.79 4.35
573 879 1.402787 CCCCAACAAGAAAGTGTGCT 58.597 50.000 0.00 0.00 0.00 4.40
599 905 0.179045 CCTAATTAGCAGCAGGCCGT 60.179 55.000 6.99 0.00 46.50 5.68
605 911 1.525995 GCCGCCCTAATTAGCAGCA 60.526 57.895 19.68 0.00 0.00 4.41
608 914 2.110213 CCGCCGCCCTAATTAGCA 59.890 61.111 6.99 0.00 0.00 3.49
611 917 1.458020 TCCTCCGCCGCCCTAATTA 60.458 57.895 0.00 0.00 0.00 1.40
612 918 2.766651 TCCTCCGCCGCCCTAATT 60.767 61.111 0.00 0.00 0.00 1.40
644 994 1.153249 GGATGTTGATCGGGCCGAA 60.153 57.895 34.58 17.08 39.99 4.30
645 995 2.028125 GAGGATGTTGATCGGGCCGA 62.028 60.000 33.10 33.10 41.13 5.54
646 996 1.595382 GAGGATGTTGATCGGGCCG 60.595 63.158 22.51 22.51 0.00 6.13
647 997 1.595382 CGAGGATGTTGATCGGGCC 60.595 63.158 0.00 0.00 32.93 5.80
648 998 0.876342 GACGAGGATGTTGATCGGGC 60.876 60.000 0.00 0.00 40.67 6.13
649 999 0.595053 CGACGAGGATGTTGATCGGG 60.595 60.000 0.00 0.00 40.67 5.14
650 1000 0.595053 CCGACGAGGATGTTGATCGG 60.595 60.000 0.00 0.00 45.00 4.18
651 1001 1.209275 GCCGACGAGGATGTTGATCG 61.209 60.000 0.00 0.00 45.00 3.69
652 1002 1.209275 CGCCGACGAGGATGTTGATC 61.209 60.000 0.00 0.00 45.00 2.92
653 1003 1.226974 CGCCGACGAGGATGTTGAT 60.227 57.895 0.00 0.00 45.00 2.57
654 1004 2.180769 CGCCGACGAGGATGTTGA 59.819 61.111 0.00 0.00 45.00 3.18
655 1005 2.885644 CCGCCGACGAGGATGTTG 60.886 66.667 0.00 0.00 45.00 3.33
656 1006 4.814294 GCCGCCGACGAGGATGTT 62.814 66.667 12.49 0.00 45.00 2.71
674 1024 0.320771 AGTTACCTGTTCCTGCAGCG 60.321 55.000 8.66 1.56 35.28 5.18
717 1068 0.185175 AAAGCCTCCCGGTTTCAAGT 59.815 50.000 0.00 0.00 37.65 3.16
724 1075 0.903236 GAACTAGAAAGCCTCCCGGT 59.097 55.000 0.00 0.00 0.00 5.28
726 1077 0.179108 CCGAACTAGAAAGCCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
727 1078 0.903236 ACCGAACTAGAAAGCCTCCC 59.097 55.000 0.00 0.00 0.00 4.30
728 1079 2.764439 AACCGAACTAGAAAGCCTCC 57.236 50.000 0.00 0.00 0.00 4.30
745 1096 3.359695 TGCCCCAATCTGGTAGTTAAC 57.640 47.619 0.00 0.00 35.17 2.01
746 1097 4.601406 AATGCCCCAATCTGGTAGTTAA 57.399 40.909 0.00 0.00 35.17 2.01
747 1098 4.017958 TCAAATGCCCCAATCTGGTAGTTA 60.018 41.667 0.00 0.00 35.17 2.24
748 1099 3.099141 CAAATGCCCCAATCTGGTAGTT 58.901 45.455 0.00 0.00 35.17 2.24
749 1100 2.311542 TCAAATGCCCCAATCTGGTAGT 59.688 45.455 0.00 0.00 35.17 2.73
750 1101 3.017048 TCAAATGCCCCAATCTGGTAG 57.983 47.619 0.00 0.00 35.17 3.18
751 1102 3.096092 GTTCAAATGCCCCAATCTGGTA 58.904 45.455 0.00 0.00 35.17 3.25
752 1103 1.901833 GTTCAAATGCCCCAATCTGGT 59.098 47.619 0.00 0.00 35.17 4.00
778 1129 6.060788 TCAAAAAGAAATTGATGGGGTTTGG 58.939 36.000 0.00 0.00 32.10 3.28
795 1150 9.571810 TCAAATGACGATGGATTATTCAAAAAG 57.428 29.630 0.00 0.00 0.00 2.27
798 1153 8.352201 GGATCAAATGACGATGGATTATTCAAA 58.648 33.333 0.00 0.00 0.00 2.69
813 1168 3.562973 ACTGATGCATCGGATCAAATGAC 59.437 43.478 36.43 4.44 36.97 3.06
832 1187 3.983741 AGAGAAACAGAGGAACGAACTG 58.016 45.455 0.00 0.00 37.62 3.16
841 1196 7.625185 GCAGTAAAAAGCATAGAGAAACAGAGG 60.625 40.741 0.00 0.00 0.00 3.69
854 1209 6.088016 TCAGACAATTGCAGTAAAAAGCAT 57.912 33.333 5.05 0.00 40.94 3.79
856 1211 6.697019 TCTTTCAGACAATTGCAGTAAAAAGC 59.303 34.615 5.05 0.00 0.00 3.51
857 1212 8.131100 TCTCTTTCAGACAATTGCAGTAAAAAG 58.869 33.333 5.05 8.45 0.00 2.27
866 1222 8.292448 TGTAAAAGATCTCTTTCAGACAATTGC 58.708 33.333 5.05 0.00 44.69 3.56
872 1228 7.752686 GGCAATTGTAAAAGATCTCTTTCAGAC 59.247 37.037 7.40 5.78 44.69 3.51
893 1249 3.490060 AAACCCCCATTTCTAGGCAAT 57.510 42.857 0.00 0.00 0.00 3.56
894 1250 3.169908 GAAAACCCCCATTTCTAGGCAA 58.830 45.455 0.00 0.00 34.65 4.52
895 1251 2.381961 AGAAAACCCCCATTTCTAGGCA 59.618 45.455 0.00 0.00 43.43 4.75
896 1252 2.760650 CAGAAAACCCCCATTTCTAGGC 59.239 50.000 1.58 0.00 43.41 3.93
898 1254 2.423538 CGCAGAAAACCCCCATTTCTAG 59.576 50.000 1.58 0.00 43.41 2.43
901 1306 0.389817 GCGCAGAAAACCCCCATTTC 60.390 55.000 0.30 0.00 37.11 2.17
919 1325 3.102090 GGCACCCTTTATCTCTGGC 57.898 57.895 0.00 0.00 0.00 4.85
933 1339 1.202336 GCAAATGATGTAGCAGGGCAC 60.202 52.381 0.00 0.00 0.00 5.01
937 1343 2.953648 TGGATGCAAATGATGTAGCAGG 59.046 45.455 0.00 0.00 40.71 4.85
944 1350 4.035909 TCACGATTCTGGATGCAAATGATG 59.964 41.667 0.00 0.00 0.00 3.07
956 1362 7.279536 CCCTTCATATATCATTCACGATTCTGG 59.720 40.741 0.00 0.00 0.00 3.86
976 1382 6.014840 ACGTGTTTCTACTTCTATTCCCTTCA 60.015 38.462 0.00 0.00 0.00 3.02
977 1383 6.396450 ACGTGTTTCTACTTCTATTCCCTTC 58.604 40.000 0.00 0.00 0.00 3.46
980 1386 9.807649 TTTATACGTGTTTCTACTTCTATTCCC 57.192 33.333 0.00 0.00 0.00 3.97
1016 1431 4.744631 GCATTTTGACAACAAATTCGTCCT 59.255 37.500 0.00 0.00 43.99 3.85
1024 1439 6.339730 ACTCTGAATGCATTTTGACAACAAA 58.660 32.000 14.33 0.00 43.10 2.83
1071 1493 4.176271 GACATATTTGCTTTGGAACCAGC 58.824 43.478 0.00 0.00 34.58 4.85
1084 1506 4.375272 ACAGATGAGAGCCGACATATTTG 58.625 43.478 0.00 0.00 0.00 2.32
1093 1518 2.084610 TTTGTGACAGATGAGAGCCG 57.915 50.000 0.00 0.00 0.00 5.52
1100 1525 7.085746 TGCACATTAAGATTTTGTGACAGATG 58.914 34.615 9.74 0.00 42.59 2.90
1104 1529 6.478344 GGTTTGCACATTAAGATTTTGTGACA 59.522 34.615 9.74 5.22 42.59 3.58
1106 1531 6.478344 GTGGTTTGCACATTAAGATTTTGTGA 59.522 34.615 9.74 0.00 42.59 3.58
1107 1532 6.561902 CGTGGTTTGCACATTAAGATTTTGTG 60.562 38.462 2.42 2.42 42.80 3.33
1108 1533 5.461737 CGTGGTTTGCACATTAAGATTTTGT 59.538 36.000 0.00 0.00 0.00 2.83
1122 1547 2.224549 CGGTAGATTTTCGTGGTTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
1126 1551 3.405823 TTCCGGTAGATTTTCGTGGTT 57.594 42.857 0.00 0.00 0.00 3.67
1169 1594 6.402981 AGGGGTAGATTTGAATTAGGTGTT 57.597 37.500 0.00 0.00 0.00 3.32
1189 1614 5.303971 CACTGAAGATATGCTTAGGAAGGG 58.696 45.833 0.00 0.00 36.83 3.95
1236 1662 5.737757 GCAAAGAAAGCTTATACGTTTAGGC 59.262 40.000 11.32 11.32 32.98 3.93
1264 1692 3.192466 CACGAGCATCTGATTCACATCA 58.808 45.455 0.00 0.00 37.05 3.07
1270 1698 1.931906 TCAGCACGAGCATCTGATTC 58.068 50.000 7.77 0.00 45.49 2.52
1273 1701 2.363359 ACATATCAGCACGAGCATCTGA 59.637 45.455 7.77 2.50 45.49 3.27
1275 1703 4.021632 ACATACATATCAGCACGAGCATCT 60.022 41.667 7.77 0.00 45.49 2.90
1279 1707 4.271049 ACAAACATACATATCAGCACGAGC 59.729 41.667 0.00 0.00 42.56 5.03
1312 1757 5.163713 GGAAGATGTATGCAAAGGAGAACAC 60.164 44.000 0.00 0.00 0.00 3.32
1326 1771 6.412362 ACTAGCATTCTTCGGAAGATGTAT 57.588 37.500 20.30 9.13 41.60 2.29
1327 1772 5.854010 ACTAGCATTCTTCGGAAGATGTA 57.146 39.130 20.30 7.14 41.60 2.29
1362 1807 1.765904 TGCATTAATCGCAGGGTCCTA 59.234 47.619 8.04 0.00 33.55 2.94
1365 1810 2.221169 TCATGCATTAATCGCAGGGTC 58.779 47.619 17.97 0.00 43.88 4.46
1367 1812 2.497138 TCTCATGCATTAATCGCAGGG 58.503 47.619 17.97 12.55 43.88 4.45
1391 1836 5.243207 TCAGCATATCTTCAGTGCATATGG 58.757 41.667 4.56 0.00 41.19 2.74
1418 1931 7.171337 CCCATAAAACCAACAGAACATGAAAAG 59.829 37.037 0.00 0.00 0.00 2.27
1423 1938 5.243730 AGACCCATAAAACCAACAGAACATG 59.756 40.000 0.00 0.00 0.00 3.21
1443 1958 6.154706 TCCTACAGAAAAACAGAGGATAGACC 59.845 42.308 0.00 0.00 39.35 3.85
1444 1959 7.093684 ACTCCTACAGAAAAACAGAGGATAGAC 60.094 40.741 0.00 0.00 32.77 2.59
1447 1962 7.554959 AACTCCTACAGAAAAACAGAGGATA 57.445 36.000 0.00 0.00 32.77 2.59
1518 2047 8.836959 AACGTAAGACTTTCAGAATTCAAAAC 57.163 30.769 8.44 0.00 43.62 2.43
1526 2055 9.531942 TGTACAAATAACGTAAGACTTTCAGAA 57.468 29.630 0.00 0.00 43.62 3.02
1527 2056 9.701098 ATGTACAAATAACGTAAGACTTTCAGA 57.299 29.630 0.00 0.00 43.62 3.27
1573 2102 5.063944 CCTTCTGAAATAGTGTCCAACATCG 59.936 44.000 0.00 0.00 0.00 3.84
1574 2103 6.173339 TCCTTCTGAAATAGTGTCCAACATC 58.827 40.000 0.00 0.00 0.00 3.06
1616 2145 2.276116 TGGAGACTGTGGCTCGGAC 61.276 63.158 1.79 0.00 33.19 4.79
1619 2148 0.249868 TTTGTGGAGACTGTGGCTCG 60.250 55.000 0.00 0.00 33.19 5.03
1624 2153 1.901591 AGCCATTTGTGGAGACTGTG 58.098 50.000 0.00 0.00 0.00 3.66
1625 2154 3.614092 CATAGCCATTTGTGGAGACTGT 58.386 45.455 0.00 0.00 0.00 3.55
1654 2183 1.391485 CTTTGCGATGACGAGGTTGAG 59.609 52.381 0.00 0.00 42.66 3.02
1667 2196 0.038251 ACTGCTCATCGTCTTTGCGA 60.038 50.000 0.00 0.00 45.32 5.10
1688 2217 2.037687 CCCTTCCATGGCCAAGCA 59.962 61.111 10.96 0.00 0.00 3.91
1724 2253 0.958876 GCCCGTTCTTCCATTCGGTT 60.959 55.000 0.00 0.00 41.17 4.44
1748 2277 1.487142 TGGTTTCCTTGTTCTCCGACA 59.513 47.619 0.00 0.00 0.00 4.35
1841 2370 0.037303 ACTCCACAATGGCACTCCTG 59.963 55.000 0.00 0.00 37.47 3.86
1876 2405 5.435291 AGTCCATTGCATTTTTGAAACCAA 58.565 33.333 0.00 0.00 0.00 3.67
1921 2450 2.289819 CCATGCTTTTTGCCACATCCTT 60.290 45.455 0.00 0.00 42.00 3.36
1936 2465 4.453892 GCTGCCCCTTCCCATGCT 62.454 66.667 0.00 0.00 0.00 3.79
2167 2696 3.636282 TCAACTGAGTCGTTCGATTGA 57.364 42.857 0.00 1.65 0.00 2.57
2187 2716 1.507140 TCCTCATCGGCCTTACCAAT 58.493 50.000 0.00 0.00 39.03 3.16
2198 2727 3.559242 GGAGCTTCTTCAAATCCTCATCG 59.441 47.826 0.00 0.00 0.00 3.84
2208 2737 2.564947 GAGACTGGAGGAGCTTCTTCAA 59.435 50.000 4.03 0.00 0.00 2.69
2307 2836 9.747898 TTAACAAACCATAAGATCCAAGTATGT 57.252 29.630 0.00 0.00 0.00 2.29
2363 2892 7.237173 GCAGCTAGTTCTTGTAACTGTATTTG 58.763 38.462 0.74 0.00 0.00 2.32
2385 2914 1.066908 CCTCTTCCTTCTCTAGCGCAG 59.933 57.143 11.47 5.22 0.00 5.18
2445 3013 7.545265 CAGAAAAGGAAACAAACTTCACATTCA 59.455 33.333 0.00 0.00 0.00 2.57
3092 3674 7.434492 TCTTTTAGAGTCTCACGAAGTTCATT 58.566 34.615 0.00 0.00 41.61 2.57
3292 3875 5.008712 GGTCTTCAGAAGTTACACAAAAGGG 59.991 44.000 10.09 0.00 0.00 3.95
3293 3876 5.588648 TGGTCTTCAGAAGTTACACAAAAGG 59.411 40.000 10.09 0.00 0.00 3.11
3411 3994 5.559799 GCCAGCATTTAAAAACGCATTTTCA 60.560 36.000 9.45 0.00 41.42 2.69
3417 4000 2.515926 TGCCAGCATTTAAAAACGCA 57.484 40.000 9.45 3.49 0.00 5.24
3478 4061 3.942115 GCCTCCCACTCTGAATAAAGAAC 59.058 47.826 0.00 0.00 0.00 3.01
3607 4190 5.914635 ACAATGAAATGTTCGCAACAACTAG 59.085 36.000 5.94 0.00 45.86 2.57
3627 4210 7.738437 AATATCCAGGGAAATTGACAACAAT 57.262 32.000 0.00 0.00 46.99 2.71
3684 4267 7.339721 TGTTAATGGTTGAACTGAAAGGTGTTA 59.660 33.333 0.00 0.00 39.30 2.41
3941 4695 9.460019 TCACACATTTTGATCAAGTATTATGGA 57.540 29.630 8.41 0.00 0.00 3.41
3983 4737 4.863491 ACATGAGTTCTTGTCATTTGTGC 58.137 39.130 0.00 0.00 32.06 4.57
4172 4935 4.637534 GGTTGATTCATGTGCATCTACAGT 59.362 41.667 13.91 0.00 33.44 3.55
4173 4936 4.637091 TGGTTGATTCATGTGCATCTACAG 59.363 41.667 13.91 0.00 33.44 2.74
4174 4937 4.587891 TGGTTGATTCATGTGCATCTACA 58.412 39.130 13.91 0.00 28.97 2.74
4175 4938 5.297527 TCATGGTTGATTCATGTGCATCTAC 59.702 40.000 0.00 1.16 41.79 2.59
4176 4939 5.438833 TCATGGTTGATTCATGTGCATCTA 58.561 37.500 0.00 0.00 41.79 1.98
4177 4940 4.274978 TCATGGTTGATTCATGTGCATCT 58.725 39.130 0.00 0.00 41.79 2.90
4178 4941 4.642445 TCATGGTTGATTCATGTGCATC 57.358 40.909 0.00 0.00 41.79 3.91
4179 4942 4.893524 AGATCATGGTTGATTCATGTGCAT 59.106 37.500 0.00 0.00 42.73 3.96
4199 4962 1.049289 GTCGCCCCCAAGACCTAGAT 61.049 60.000 0.00 0.00 0.00 1.98
4209 4972 1.493854 AATGGTGTTAGTCGCCCCCA 61.494 55.000 0.00 0.00 45.41 4.96
4248 5011 6.432581 ACCTTAACTCCAAACCTTTCTCTTT 58.567 36.000 0.00 0.00 0.00 2.52
4302 5066 0.461516 GCACTAACTCCTTACGCCCC 60.462 60.000 0.00 0.00 0.00 5.80
4443 5207 5.163774 GCTGCCAGCTTTAATCATAGCTATC 60.164 44.000 10.04 0.00 45.54 2.08
4468 5232 4.152045 CAGAGACAGAGATCTTTGCACAAC 59.848 45.833 12.97 6.64 0.00 3.32
4469 5233 4.039609 TCAGAGACAGAGATCTTTGCACAA 59.960 41.667 12.97 0.00 32.22 3.33
4511 5275 9.665719 AAAAAGGAAAATGTTTTTAGAGAGCAA 57.334 25.926 0.00 0.00 34.78 3.91
4606 5645 4.182315 TGCATGCGCGCAGATTGG 62.182 61.111 38.44 24.15 42.97 3.16
4615 5654 1.194098 GACTCATATGACTGCATGCGC 59.806 52.381 14.09 0.00 35.94 6.09
4625 5664 5.360999 CCTACACCAGAGTTGACTCATATGA 59.639 44.000 13.20 5.07 45.21 2.15
4640 5679 6.543831 CCCTGAGAAATAATTTCCTACACCAG 59.456 42.308 0.00 0.00 40.54 4.00
4643 5682 7.110155 TCACCCTGAGAAATAATTTCCTACAC 58.890 38.462 0.00 0.00 40.54 2.90
4665 5704 4.278975 AGTTCTTGGACCTTCTCATCAC 57.721 45.455 0.00 0.00 0.00 3.06
4690 5729 7.428282 TGACAAATAGAAAAACGCAGTGATA 57.572 32.000 0.00 0.00 45.00 2.15
4691 5730 6.312399 TGACAAATAGAAAAACGCAGTGAT 57.688 33.333 0.00 0.00 45.00 3.06
4692 5731 5.743026 TGACAAATAGAAAAACGCAGTGA 57.257 34.783 0.00 0.00 45.00 3.41
4693 5732 5.164158 GCATGACAAATAGAAAAACGCAGTG 60.164 40.000 0.00 0.00 45.00 3.66
4695 5734 4.916831 TGCATGACAAATAGAAAAACGCAG 59.083 37.500 0.00 0.00 0.00 5.18
4698 5737 7.801547 ATTCTGCATGACAAATAGAAAAACG 57.198 32.000 0.00 0.00 31.89 3.60
4699 5738 9.846248 AGTATTCTGCATGACAAATAGAAAAAC 57.154 29.630 0.00 0.00 31.89 2.43
4701 5740 8.677300 GGAGTATTCTGCATGACAAATAGAAAA 58.323 33.333 0.00 0.00 31.89 2.29
4705 5744 6.017605 GTGGGAGTATTCTGCATGACAAATAG 60.018 42.308 0.00 0.00 33.59 1.73
4763 5802 8.902540 TGTTTCATTAGTTCTTGTGTCACTAT 57.097 30.769 4.27 0.00 0.00 2.12
4765 5804 7.283127 ACATGTTTCATTAGTTCTTGTGTCACT 59.717 33.333 4.27 0.00 0.00 3.41
4770 5809 9.546909 GATACACATGTTTCATTAGTTCTTGTG 57.453 33.333 0.00 0.00 38.88 3.33
4891 5931 2.015736 AAGCTCACGCACCATTAGAG 57.984 50.000 0.00 0.00 39.10 2.43
4915 5955 3.845992 TGTCCTTGGAGATCATTTCCTGA 59.154 43.478 0.00 0.00 38.53 3.86
5015 6055 1.197036 GGCAAAAGGCTTGTACTCGTC 59.803 52.381 0.00 0.00 44.01 4.20
5041 6081 4.202441 CACCATAGATTTCTCCACCTTGG 58.798 47.826 0.00 0.00 39.43 3.61
5058 6098 2.334977 TCCACAACTCAGGTACACCAT 58.665 47.619 0.38 0.00 38.89 3.55
5105 6145 3.877508 GCGTACTGGATGCCTTCTTTTAT 59.122 43.478 0.00 0.00 33.55 1.40
5142 6182 1.751924 AGCGCTTCCTCTTATTCGTCT 59.248 47.619 2.64 0.00 0.00 4.18
5167 6207 7.818997 TGAAGAATACTAAGCTAGATTCGGA 57.181 36.000 0.00 0.00 34.23 4.55
5176 6216 6.647067 GCGGAACATATGAAGAATACTAAGCT 59.353 38.462 10.38 0.00 0.00 3.74
5198 6238 1.404391 ACACCGATACTAGTTCAGCGG 59.596 52.381 18.37 18.37 43.95 5.52
5200 6240 7.399523 CAAAATTACACCGATACTAGTTCAGC 58.600 38.462 0.00 0.00 0.00 4.26
5210 6250 5.883115 TGATTCAGGCAAAATTACACCGATA 59.117 36.000 0.00 0.00 0.00 2.92
5233 6273 4.687948 CCACAGCCGATAAACTATCTGATG 59.312 45.833 0.00 2.92 40.25 3.07
5234 6274 4.588951 TCCACAGCCGATAAACTATCTGAT 59.411 41.667 0.00 0.00 33.01 2.90
5235 6275 3.958147 TCCACAGCCGATAAACTATCTGA 59.042 43.478 0.00 0.00 33.01 3.27
5236 6276 4.302455 CTCCACAGCCGATAAACTATCTG 58.698 47.826 0.00 0.00 33.01 2.90
5242 6282 0.463833 CCCCTCCACAGCCGATAAAC 60.464 60.000 0.00 0.00 0.00 2.01
5329 6378 4.844085 TCAAGGAGTTAGAGATCCCACAAA 59.156 41.667 0.00 0.00 36.14 2.83
5337 6386 5.894393 TCGGAAAGATCAAGGAGTTAGAGAT 59.106 40.000 0.00 0.00 0.00 2.75
5347 6396 9.102757 CAATATATACCATCGGAAAGATCAAGG 57.897 37.037 0.00 0.00 37.52 3.61
5412 6462 3.069443 AGCAGAAGGTTCTAGCTATGAGC 59.931 47.826 12.24 0.00 38.76 4.26
5426 6476 2.839486 TGGAACACAGTAGCAGAAGG 57.161 50.000 0.00 0.00 0.00 3.46
5444 6496 7.660617 AGCCATTCTAGATCTCACAAACATATG 59.339 37.037 0.00 0.00 0.00 1.78
5462 6514 3.134623 TCATCCGTTCATGTAGCCATTCT 59.865 43.478 0.00 0.00 0.00 2.40
5467 6519 1.940613 GGTTCATCCGTTCATGTAGCC 59.059 52.381 0.00 0.00 0.00 3.93
5475 6527 1.464997 GAGTTGCAGGTTCATCCGTTC 59.535 52.381 0.00 0.00 41.99 3.95
5476 6528 1.202758 TGAGTTGCAGGTTCATCCGTT 60.203 47.619 0.00 0.00 41.99 4.44
5477 6529 0.396435 TGAGTTGCAGGTTCATCCGT 59.604 50.000 0.00 0.00 41.99 4.69
5478 6530 1.522668 TTGAGTTGCAGGTTCATCCG 58.477 50.000 0.00 0.00 41.99 4.18
5479 6531 4.240096 CATTTTGAGTTGCAGGTTCATCC 58.760 43.478 0.00 0.00 0.00 3.51
5480 6532 3.676646 GCATTTTGAGTTGCAGGTTCATC 59.323 43.478 0.00 0.00 38.72 2.92
5481 6533 3.069872 TGCATTTTGAGTTGCAGGTTCAT 59.930 39.130 0.00 0.00 43.54 2.57
5482 6534 2.429971 TGCATTTTGAGTTGCAGGTTCA 59.570 40.909 0.00 0.00 43.54 3.18
5510 6562 3.127030 GCATGTACAACTTTACCTGCCTC 59.873 47.826 0.00 0.00 37.53 4.70
5534 6586 1.956636 GCAGGATGGTTTGCATGGAGA 60.957 52.381 0.00 0.00 40.02 3.71
5556 6608 4.835056 TGATAGATCCCATGTAGTCCTGTG 59.165 45.833 0.00 0.00 0.00 3.66
5590 6642 9.168451 CGAGAGCCAAATACTAGAAGATAGATA 57.832 37.037 0.00 0.00 0.00 1.98
5617 6669 0.394352 ACAAAGATAGGCGCCCAAGG 60.394 55.000 26.15 9.20 0.00 3.61
5637 6689 2.782925 AGGGGGTGCAAAAAGGAAAATT 59.217 40.909 0.00 0.00 0.00 1.82
5658 6711 2.529632 TGCTTTCTCTCTAGACTGGCA 58.470 47.619 0.00 0.00 32.14 4.92
5659 6712 3.194542 TCTTGCTTTCTCTCTAGACTGGC 59.805 47.826 0.00 0.00 0.00 4.85
5660 6713 5.398603 TTCTTGCTTTCTCTCTAGACTGG 57.601 43.478 0.00 0.00 0.00 4.00
5661 6714 6.128580 GCTTTTCTTGCTTTCTCTCTAGACTG 60.129 42.308 0.00 0.00 0.00 3.51
5662 6715 5.931724 GCTTTTCTTGCTTTCTCTCTAGACT 59.068 40.000 0.00 0.00 0.00 3.24
5663 6716 5.931724 AGCTTTTCTTGCTTTCTCTCTAGAC 59.068 40.000 0.00 0.00 37.52 2.59
5664 6717 6.107901 AGCTTTTCTTGCTTTCTCTCTAGA 57.892 37.500 0.00 0.00 37.52 2.43
5665 6718 7.319646 TCTAGCTTTTCTTGCTTTCTCTCTAG 58.680 38.462 0.00 0.00 41.46 2.43
5667 6720 6.107901 TCTAGCTTTTCTTGCTTTCTCTCT 57.892 37.500 0.00 0.00 41.46 3.10
5672 6727 7.533426 TCAATCATCTAGCTTTTCTTGCTTTC 58.467 34.615 0.00 0.00 41.46 2.62
5706 6761 3.181507 CCGATTGGAATCACACATGTGTC 60.182 47.826 28.38 16.74 41.61 3.67
5707 6762 2.749076 CCGATTGGAATCACACATGTGT 59.251 45.455 25.76 25.76 41.61 3.72
6231 7287 2.754658 ACAGGTCGGGCCGAGTAG 60.755 66.667 31.98 22.95 43.70 2.57
6351 7407 3.228188 TGTGGTGCTCCATCTCTTTTT 57.772 42.857 11.31 0.00 46.20 1.94
6520 7576 2.299993 TCTGAATTAGTGCAGCTCGG 57.700 50.000 0.00 0.00 32.27 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.