Multiple sequence alignment - TraesCS3D01G032200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G032200 chr3D 100.000 3425 0 0 1 3425 11794134 11797558 0.000000e+00 6325.0
1 TraesCS3D01G032200 chr3D 88.057 1415 155 11 1018 2419 11417742 11416329 0.000000e+00 1664.0
2 TraesCS3D01G032200 chr3D 84.188 1404 206 10 1018 2407 707936 709337 0.000000e+00 1349.0
3 TraesCS3D01G032200 chr3D 97.531 81 2 0 3305 3385 311544041 311543961 4.610000e-29 139.0
4 TraesCS3D01G032200 chr3B 86.853 2472 217 52 21 2428 16691590 16694017 0.000000e+00 2665.0
5 TraesCS3D01G032200 chr3B 91.399 1465 120 5 966 2428 16758195 16756735 0.000000e+00 2002.0
6 TraesCS3D01G032200 chr3B 88.415 1407 149 11 1014 2407 25219968 25221373 0.000000e+00 1683.0
7 TraesCS3D01G032200 chr3B 88.177 1404 152 11 1017 2407 16079702 16078300 0.000000e+00 1661.0
8 TraesCS3D01G032200 chr3B 83.592 1420 205 14 1018 2414 5938566 5939980 0.000000e+00 1306.0
9 TraesCS3D01G032200 chr3B 90.486 967 88 4 966 1930 16958552 16959516 0.000000e+00 1273.0
10 TraesCS3D01G032200 chr3B 82.437 985 142 8 1454 2429 16983163 16984125 0.000000e+00 832.0
11 TraesCS3D01G032200 chr3B 83.877 521 63 13 21 537 680730340 680730843 8.600000e-131 477.0
12 TraesCS3D01G032200 chr3B 83.544 474 66 7 2741 3203 16977554 16978026 1.890000e-117 433.0
13 TraesCS3D01G032200 chr3B 83.807 457 62 7 2758 3203 16850241 16849786 1.140000e-114 424.0
14 TraesCS3D01G032200 chr3B 80.454 573 78 24 20 562 28000611 28000043 1.140000e-109 407.0
15 TraesCS3D01G032200 chr3B 87.586 290 36 0 26 315 42728205 42727916 1.520000e-88 337.0
16 TraesCS3D01G032200 chr3B 87.552 241 29 1 2189 2429 16733754 16733993 9.360000e-71 278.0
17 TraesCS3D01G032200 chr3B 79.224 438 57 17 2618 3031 16755278 16754851 1.210000e-69 274.0
18 TraesCS3D01G032200 chr3B 85.356 239 35 0 310 548 41311446 41311684 7.340000e-62 248.0
19 TraesCS3D01G032200 chr3B 85.922 206 28 1 2827 3031 16731283 16731488 5.750000e-53 219.0
20 TraesCS3D01G032200 chr3B 85.185 216 23 4 540 755 16676624 16676830 2.680000e-51 213.0
21 TraesCS3D01G032200 chr3B 85.222 203 29 1 2830 3031 16853609 16853407 1.250000e-49 207.0
22 TraesCS3D01G032200 chr3B 83.796 216 27 2 540 755 16958007 16958214 7.500000e-47 198.0
23 TraesCS3D01G032200 chr3B 92.784 97 6 1 2618 2714 16853751 16853656 4.610000e-29 139.0
24 TraesCS3D01G032200 chr3B 83.688 141 13 5 3073 3203 17031097 17031237 1.290000e-24 124.0
25 TraesCS3D01G032200 chr3B 88.660 97 10 1 2618 2714 16731144 16731239 2.160000e-22 117.0
26 TraesCS3D01G032200 chr3B 94.667 75 4 0 3220 3294 16733278 16733352 2.160000e-22 117.0
27 TraesCS3D01G032200 chr3B 94.667 75 4 0 3129 3203 16736244 16736318 2.160000e-22 117.0
28 TraesCS3D01G032200 chr3B 92.105 76 6 0 3128 3203 16986043 16986118 1.300000e-19 108.0
29 TraesCS3D01G032200 chr3B 90.000 80 6 1 3220 3297 16852927 16852848 6.050000e-18 102.0
30 TraesCS3D01G032200 chr3B 82.456 114 9 6 3073 3176 16754850 16754738 4.710000e-14 89.8
31 TraesCS3D01G032200 chr3A 88.136 1416 154 11 1014 2416 25896124 25897538 0.000000e+00 1672.0
32 TraesCS3D01G032200 chr3A 85.491 1406 192 10 1018 2414 8910250 8908848 0.000000e+00 1456.0
33 TraesCS3D01G032200 chr3A 88.568 796 91 0 1286 2081 25232500 25231705 0.000000e+00 966.0
34 TraesCS3D01G032200 chr3A 86.441 826 110 2 1586 2410 25770243 25771067 0.000000e+00 904.0
35 TraesCS3D01G032200 chr3A 82.641 409 57 9 2626 3031 25204907 25204510 1.960000e-92 350.0
36 TraesCS3D01G032200 chr3A 89.669 242 24 1 306 547 614470434 614470674 1.190000e-79 307.0
37 TraesCS3D01G032200 chr3A 86.121 281 23 1 2916 3180 25212338 25212058 4.320000e-74 289.0
38 TraesCS3D01G032200 chr3A 88.571 140 12 4 2480 2617 25212820 25212683 2.110000e-37 167.0
39 TraesCS3D01G032200 chr3A 87.500 128 13 2 2483 2610 25205082 25204958 9.910000e-31 145.0
40 TraesCS3D01G032200 chr3A 85.816 141 10 6 3073 3203 25204509 25204369 1.280000e-29 141.0
41 TraesCS3D01G032200 chr3A 93.846 65 4 0 2618 2682 25212646 25212582 7.820000e-17 99.0
42 TraesCS3D01G032200 chr6B 89.831 295 28 2 26 318 529475737 529475443 8.970000e-101 377.0
43 TraesCS3D01G032200 chr2D 89.655 290 30 0 26 315 512678809 512679098 1.500000e-98 370.0
44 TraesCS3D01G032200 chr2D 89.451 237 25 0 310 546 559121350 559121114 2.000000e-77 300.0
45 TraesCS3D01G032200 chr2D 87.124 233 30 0 312 544 600412936 600413168 7.290000e-67 265.0
46 TraesCS3D01G032200 chr5D 86.349 315 40 1 1 315 54940306 54940617 1.180000e-89 340.0
47 TraesCS3D01G032200 chr6A 87.285 291 35 1 22 310 531453151 531453441 7.080000e-87 331.0
48 TraesCS3D01G032200 chr6A 97.500 80 2 0 3305 3384 181335160 181335081 1.660000e-28 137.0
49 TraesCS3D01G032200 chr6A 97.500 80 2 0 3305 3384 567724681 567724602 1.660000e-28 137.0
50 TraesCS3D01G032200 chr6A 90.741 54 3 2 3373 3425 59905070 59905122 1.710000e-08 71.3
51 TraesCS3D01G032200 chr7D 87.329 292 32 3 26 315 627058061 627058349 2.550000e-86 329.0
52 TraesCS3D01G032200 chr5A 87.633 283 34 1 27 309 632998561 632998842 9.160000e-86 327.0
53 TraesCS3D01G032200 chr5A 96.429 84 2 1 3299 3382 266913209 266913291 1.660000e-28 137.0
54 TraesCS3D01G032200 chr5A 86.154 65 7 2 1855 1918 643651818 643651755 6.130000e-08 69.4
55 TraesCS3D01G032200 chr4A 83.082 331 50 5 154 481 136798490 136798163 2.580000e-76 296.0
56 TraesCS3D01G032200 chr6D 85.833 240 31 3 309 548 312824224 312823988 5.670000e-63 252.0
57 TraesCS3D01G032200 chr6D 97.500 80 2 0 3305 3384 64051279 64051200 1.660000e-28 137.0
58 TraesCS3D01G032200 chr1A 85.656 244 25 6 309 544 12376949 12376708 7.340000e-62 248.0
59 TraesCS3D01G032200 chr1A 92.857 126 7 2 3301 3425 344493163 344493039 7.550000e-42 182.0
60 TraesCS3D01G032200 chr1A 94.118 51 2 1 3375 3425 487561575 487561624 3.670000e-10 76.8
61 TraesCS3D01G032200 chr1A 92.453 53 3 1 3373 3425 386746582 386746531 1.320000e-09 75.0
62 TraesCS3D01G032200 chr2A 85.043 234 29 4 311 544 695185981 695186208 2.060000e-57 233.0
63 TraesCS3D01G032200 chr4D 97.500 80 2 0 3305 3384 362510061 362510140 1.660000e-28 137.0
64 TraesCS3D01G032200 chr4D 97.500 80 2 0 3305 3384 421409683 421409604 1.660000e-28 137.0
65 TraesCS3D01G032200 chr4D 94.231 52 2 1 3369 3420 235276395 235276345 1.020000e-10 78.7
66 TraesCS3D01G032200 chr4D 89.474 57 4 2 3371 3425 81066023 81065967 1.710000e-08 71.3
67 TraesCS3D01G032200 chr4B 97.500 80 2 0 3305 3384 165505163 165505242 1.660000e-28 137.0
68 TraesCS3D01G032200 chr5B 95.918 49 2 0 3377 3425 23546087 23546135 2.830000e-11 80.5
69 TraesCS3D01G032200 chr2B 95.833 48 1 1 3378 3425 477287300 477287254 3.670000e-10 76.8
70 TraesCS3D01G032200 chr1D 95.745 47 1 1 3376 3422 144603996 144603951 1.320000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G032200 chr3D 11794134 11797558 3424 False 6325.0 6325 100.000000 1 3425 1 chr3D.!!$F2 3424
1 TraesCS3D01G032200 chr3D 11416329 11417742 1413 True 1664.0 1664 88.057000 1018 2419 1 chr3D.!!$R1 1401
2 TraesCS3D01G032200 chr3D 707936 709337 1401 False 1349.0 1349 84.188000 1018 2407 1 chr3D.!!$F1 1389
3 TraesCS3D01G032200 chr3B 16691590 16694017 2427 False 2665.0 2665 86.853000 21 2428 1 chr3B.!!$F3 2407
4 TraesCS3D01G032200 chr3B 25219968 25221373 1405 False 1683.0 1683 88.415000 1014 2407 1 chr3B.!!$F6 1393
5 TraesCS3D01G032200 chr3B 16078300 16079702 1402 True 1661.0 1661 88.177000 1017 2407 1 chr3B.!!$R1 1390
6 TraesCS3D01G032200 chr3B 5938566 5939980 1414 False 1306.0 1306 83.592000 1018 2414 1 chr3B.!!$F1 1396
7 TraesCS3D01G032200 chr3B 16754738 16758195 3457 True 788.6 2002 84.359667 966 3176 3 chr3B.!!$R4 2210
8 TraesCS3D01G032200 chr3B 16958007 16959516 1509 False 735.5 1273 87.141000 540 1930 2 chr3B.!!$F10 1390
9 TraesCS3D01G032200 chr3B 680730340 680730843 503 False 477.0 477 83.877000 21 537 1 chr3B.!!$F8 516
10 TraesCS3D01G032200 chr3B 16983163 16986118 2955 False 470.0 832 87.271000 1454 3203 2 chr3B.!!$F11 1749
11 TraesCS3D01G032200 chr3B 28000043 28000611 568 True 407.0 407 80.454000 20 562 1 chr3B.!!$R2 542
12 TraesCS3D01G032200 chr3B 16849786 16853751 3965 True 218.0 424 87.953250 2618 3297 4 chr3B.!!$R5 679
13 TraesCS3D01G032200 chr3A 25896124 25897538 1414 False 1672.0 1672 88.136000 1014 2416 1 chr3A.!!$F2 1402
14 TraesCS3D01G032200 chr3A 8908848 8910250 1402 True 1456.0 1456 85.491000 1018 2414 1 chr3A.!!$R1 1396
15 TraesCS3D01G032200 chr3A 25231705 25232500 795 True 966.0 966 88.568000 1286 2081 1 chr3A.!!$R2 795
16 TraesCS3D01G032200 chr3A 25770243 25771067 824 False 904.0 904 86.441000 1586 2410 1 chr3A.!!$F1 824
17 TraesCS3D01G032200 chr3A 25204369 25205082 713 True 212.0 350 85.319000 2483 3203 3 chr3A.!!$R3 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.106217 GAGGAGGGAGAGCAGCTACT 60.106 60.0 0.00 0.0 0.00 2.57 F
285 288 0.180642 ACTCGGTGCGGAGATAGAGA 59.819 55.0 12.64 0.0 37.49 3.10 F
994 1163 0.236711 CAAGGAGAAACACAGCAGCG 59.763 55.0 0.00 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1600 2.003548 GAGCCCATGGAGGTTCCCT 61.004 63.158 15.22 0.00 35.03 4.20 R
1467 1636 2.101380 GAGACGTCGAGCTCTGGC 59.899 66.667 12.85 6.13 39.06 4.85 R
2555 2950 0.107459 GAGAGCCCTAACTTGCCCAG 60.107 60.000 0.00 0.00 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 0.106217 GAGGAGGGAGAGCAGCTACT 60.106 60.000 0.00 0.00 0.00 2.57
94 95 2.123640 GGAGGAGGCGGAGTAGCT 60.124 66.667 0.00 0.00 37.29 3.32
211 214 1.428869 GATGAGGCCTATGTGGAGGT 58.571 55.000 4.42 0.00 39.02 3.85
262 265 4.755614 GTCCGACGCGCTCTTCGT 62.756 66.667 5.73 3.59 43.49 3.85
270 273 2.489617 GCGCTCTTCGTCGAACTCG 61.490 63.158 2.90 8.69 41.07 4.18
271 274 1.863880 CGCTCTTCGTCGAACTCGG 60.864 63.158 2.90 0.00 40.29 4.63
285 288 0.180642 ACTCGGTGCGGAGATAGAGA 59.819 55.000 12.64 0.00 37.49 3.10
289 292 1.693627 GGTGCGGAGATAGAGAAGGA 58.306 55.000 0.00 0.00 0.00 3.36
366 396 5.484715 ACGAGGAGTAGCTAGATCATCTAC 58.515 45.833 14.96 3.41 34.45 2.59
368 398 5.484715 GAGGAGTAGCTAGATCATCTACGT 58.515 45.833 11.45 0.00 38.11 3.57
373 403 7.489113 GGAGTAGCTAGATCATCTACGTAGTAC 59.511 44.444 21.53 12.24 45.11 2.73
391 421 6.300902 CGTAGTACGTAGGTTATATCGTTTGC 59.699 42.308 14.62 0.00 36.74 3.68
396 426 4.447724 CGTAGGTTATATCGTTTGCATGCT 59.552 41.667 20.33 0.00 0.00 3.79
411 441 3.933955 TGCATGCTTTTGTATGGATTTGC 59.066 39.130 20.33 0.00 41.83 3.68
430 460 8.012241 GGATTTGCGAATTTAGTATGAGATGTC 58.988 37.037 0.00 0.00 0.00 3.06
440 470 1.126488 ATGAGATGTCCGGATGCAGT 58.874 50.000 7.81 0.00 0.00 4.40
462 492 3.153919 TGTGTTAATTTGAGGAGTGCCC 58.846 45.455 0.00 0.00 33.31 5.36
468 498 1.488705 TTTGAGGAGTGCCCGGTCAT 61.489 55.000 0.00 0.00 40.87 3.06
471 501 3.134127 GGAGTGCCCGGTCATTGC 61.134 66.667 0.00 0.00 0.00 3.56
482 512 4.690719 TCATTGCCCGCGGACGTT 62.691 61.111 30.73 2.68 37.70 3.99
492 522 4.003788 CGGACGTTCCCAGGTGCT 62.004 66.667 0.00 0.00 31.13 4.40
494 524 1.228154 GGACGTTCCCAGGTGCTTT 60.228 57.895 0.00 0.00 0.00 3.51
509 539 3.308878 CTTTCGCGGGCGTTTGAGG 62.309 63.158 13.21 0.00 40.74 3.86
514 544 2.267642 CGGGCGTTTGAGGGATCA 59.732 61.111 0.00 0.00 0.00 2.92
519 549 3.222603 GGGCGTTTGAGGGATCATATTT 58.777 45.455 0.00 0.00 0.00 1.40
524 554 6.016276 GGCGTTTGAGGGATCATATTTGTTAT 60.016 38.462 0.00 0.00 0.00 1.89
536 566 7.595311 TCATATTTGTTATATGCGGCTGTAG 57.405 36.000 0.00 0.00 33.29 2.74
546 576 1.067669 TGCGGCTGTAGATGCTCTAAG 59.932 52.381 0.00 0.00 29.58 2.18
633 666 3.680777 AAGGTTGGAAAGGGAAAGACA 57.319 42.857 0.00 0.00 0.00 3.41
694 727 1.347320 GGACGACGTGGATGAGTTTC 58.653 55.000 4.58 0.00 0.00 2.78
695 728 1.347320 GACGACGTGGATGAGTTTCC 58.653 55.000 4.58 0.00 36.24 3.13
708 741 2.882137 TGAGTTTCCAACCGGTGAATTC 59.118 45.455 8.52 9.86 0.00 2.17
724 757 3.321682 TGAATTCAAGCTTTTCCCCAGTG 59.678 43.478 5.45 0.00 0.00 3.66
733 766 3.889538 GCTTTTCCCCAGTGTTAAACTCT 59.110 43.478 0.00 0.00 36.83 3.24
757 824 1.802365 GCACCGTCGAATGGTAAAGTT 59.198 47.619 10.06 0.00 34.66 2.66
759 826 3.061322 CACCGTCGAATGGTAAAGTTGA 58.939 45.455 10.06 0.00 34.66 3.18
763 830 4.460505 CGTCGAATGGTAAAGTTGAAACC 58.539 43.478 0.00 0.00 0.00 3.27
769 836 3.571590 TGGTAAAGTTGAAACCTGCCAT 58.428 40.909 4.48 0.00 34.23 4.40
774 841 6.589907 GGTAAAGTTGAAACCTGCCATAATTG 59.410 38.462 0.00 0.00 0.00 2.32
827 912 0.250793 TGGGCGTGAACGGACAATAT 59.749 50.000 4.84 0.00 40.23 1.28
828 913 1.481363 TGGGCGTGAACGGACAATATA 59.519 47.619 4.84 0.00 40.23 0.86
829 914 2.093606 TGGGCGTGAACGGACAATATAA 60.094 45.455 4.84 0.00 40.23 0.98
830 915 3.135994 GGGCGTGAACGGACAATATAAT 58.864 45.455 4.84 0.00 40.23 1.28
836 934 6.345565 GCGTGAACGGACAATATAATCTGTAC 60.346 42.308 4.84 0.00 40.23 2.90
898 1005 5.725551 ATCTAGATCAGATCTCGGGGTAT 57.274 43.478 16.70 0.00 40.09 2.73
902 1009 3.829601 AGATCAGATCTCGGGGTATGAAC 59.170 47.826 7.15 0.00 33.42 3.18
908 1054 2.542550 TCTCGGGGTATGAACCTTTGA 58.457 47.619 0.00 0.00 45.95 2.69
927 1073 8.758829 ACCTTTGAATAAATTAATTCACTCCCC 58.241 33.333 0.10 0.00 43.69 4.81
928 1074 8.204160 CCTTTGAATAAATTAATTCACTCCCCC 58.796 37.037 0.10 0.00 43.69 5.40
947 1096 1.697982 CCTCCTCCCCTATTTAACCCG 59.302 57.143 0.00 0.00 0.00 5.28
990 1159 2.206576 ATCCCAAGGAGAAACACAGC 57.793 50.000 0.00 0.00 34.05 4.40
991 1160 0.843309 TCCCAAGGAGAAACACAGCA 59.157 50.000 0.00 0.00 0.00 4.41
994 1163 0.236711 CAAGGAGAAACACAGCAGCG 59.763 55.000 0.00 0.00 0.00 5.18
996 1165 0.320247 AGGAGAAACACAGCAGCGAG 60.320 55.000 0.00 0.00 0.00 5.03
999 1168 0.601311 AGAAACACAGCAGCGAGACC 60.601 55.000 0.00 0.00 0.00 3.85
1005 1174 1.812922 CAGCAGCGAGACCATGGAC 60.813 63.158 21.47 13.40 0.00 4.02
1010 1179 2.180769 CGAGACCATGGACGCGAA 59.819 61.111 29.75 0.00 35.64 4.70
1012 1181 1.080093 GAGACCATGGACGCGAACA 60.080 57.895 21.47 12.04 0.00 3.18
1146 1315 1.675641 GGCCACGCTCATCACCTTT 60.676 57.895 0.00 0.00 0.00 3.11
1243 1412 3.998156 TCGACCTCTCCGACCTTG 58.002 61.111 0.00 0.00 0.00 3.61
1244 1413 1.677966 TCGACCTCTCCGACCTTGG 60.678 63.158 0.00 0.00 0.00 3.61
1322 1491 4.144703 GACGGGGGTTCTCTCGGC 62.145 72.222 0.00 0.00 0.00 5.54
1419 1588 2.499685 GGCGTGCCGAGAAGGTAT 59.500 61.111 0.00 0.00 43.70 2.73
1431 1600 3.384789 CGAGAAGGTATCTGTTCCATCCA 59.615 47.826 0.00 0.00 38.96 3.41
1451 1620 1.925888 GGAACCTCCATGGGCTCAT 59.074 57.895 13.02 0.00 41.11 2.90
1464 1633 2.158519 TGGGCTCATGATCATGCTTCAT 60.159 45.455 27.68 5.44 38.65 2.57
1467 1636 3.189495 GGCTCATGATCATGCTTCATCTG 59.811 47.826 27.68 5.86 38.65 2.90
1653 1822 0.474184 CCGAGGCCATCCTGGTAAAT 59.526 55.000 5.01 0.00 44.46 1.40
1821 2016 0.673644 CGCCCAAGTCGGTCATCTTT 60.674 55.000 0.00 0.00 0.00 2.52
1892 2087 4.154347 CCTCGGGCTGGAGCTCAC 62.154 72.222 17.19 5.63 43.04 3.51
2307 2604 4.770874 GGCAAAGGCGCCGAGGTA 62.771 66.667 23.20 0.00 43.52 3.08
2407 2704 2.112928 TGGTGCGCAAGTGGACAT 59.887 55.556 14.00 0.00 41.68 3.06
2432 2729 3.121544 GCGAGTATTGCTAGGTGTTACC 58.878 50.000 0.00 0.00 44.02 2.85
2433 2730 3.369385 CGAGTATTGCTAGGTGTTACCG 58.631 50.000 0.00 0.00 44.90 4.02
2434 2731 3.181493 CGAGTATTGCTAGGTGTTACCGT 60.181 47.826 0.00 0.00 44.90 4.83
2435 2732 4.110482 GAGTATTGCTAGGTGTTACCGTG 58.890 47.826 0.00 0.00 44.90 4.94
2436 2733 3.512724 AGTATTGCTAGGTGTTACCGTGT 59.487 43.478 0.00 0.00 44.90 4.49
2437 2734 2.914695 TTGCTAGGTGTTACCGTGTT 57.085 45.000 0.00 0.00 44.90 3.32
2440 2737 2.265683 GCTAGGTGTTACCGTGTTAGC 58.734 52.381 0.00 0.00 44.90 3.09
2443 2740 3.412237 AGGTGTTACCGTGTTAGCAAT 57.588 42.857 0.00 0.00 44.90 3.56
2445 2742 2.417586 GGTGTTACCGTGTTAGCAATCC 59.582 50.000 0.00 0.00 0.00 3.01
2447 2744 3.499157 GTGTTACCGTGTTAGCAATCCAA 59.501 43.478 0.00 0.00 0.00 3.53
2449 2746 1.530323 ACCGTGTTAGCAATCCAACC 58.470 50.000 0.00 0.00 0.00 3.77
2451 2748 2.091541 CCGTGTTAGCAATCCAACCAT 58.908 47.619 0.00 0.00 0.00 3.55
2458 2755 5.822519 TGTTAGCAATCCAACCATACATCTC 59.177 40.000 0.00 0.00 0.00 2.75
2462 2759 4.631131 CAATCCAACCATACATCTCGCTA 58.369 43.478 0.00 0.00 0.00 4.26
2464 2761 2.034179 TCCAACCATACATCTCGCTACG 59.966 50.000 0.00 0.00 0.00 3.51
2465 2762 2.034179 CCAACCATACATCTCGCTACGA 59.966 50.000 0.00 0.00 0.00 3.43
2466 2763 3.490249 CCAACCATACATCTCGCTACGAA 60.490 47.826 0.00 0.00 34.74 3.85
2469 2766 3.245797 CCATACATCTCGCTACGAATGG 58.754 50.000 12.97 9.06 34.48 3.16
2472 2769 1.954382 ACATCTCGCTACGAATGGCTA 59.046 47.619 12.97 0.00 34.74 3.93
2480 2777 2.549754 GCTACGAATGGCTATGTGCATT 59.450 45.455 0.00 0.00 45.15 3.56
2481 2778 3.364366 GCTACGAATGGCTATGTGCATTC 60.364 47.826 0.00 0.00 45.15 2.67
2486 2881 4.751600 CGAATGGCTATGTGCATTCTAAGA 59.248 41.667 0.00 0.00 45.15 2.10
2535 2930 1.155889 CAACAGTCAAGCGCCACATA 58.844 50.000 2.29 0.00 0.00 2.29
2555 2950 0.394565 AGCAGGTCAACACTGGTCTC 59.605 55.000 0.00 0.00 42.48 3.36
2556 2951 0.394565 GCAGGTCAACACTGGTCTCT 59.605 55.000 0.00 0.00 36.48 3.10
2587 2982 2.003301 GGGCTCTCGATGAACAACTTC 58.997 52.381 0.00 0.00 0.00 3.01
2591 2993 4.505922 GGCTCTCGATGAACAACTTCTATG 59.494 45.833 0.00 0.00 0.00 2.23
2601 3003 8.934023 ATGAACAACTTCTATGGTTTTAGGAA 57.066 30.769 0.00 0.00 0.00 3.36
2611 3013 9.457436 TTCTATGGTTTTAGGAATAACTTGACC 57.543 33.333 0.00 0.00 0.00 4.02
2612 3014 8.050930 TCTATGGTTTTAGGAATAACTTGACCC 58.949 37.037 0.00 0.00 0.00 4.46
2616 3018 6.265876 GGTTTTAGGAATAACTTGACCCACAA 59.734 38.462 0.00 0.00 36.97 3.33
2624 4199 4.437682 AACTTGACCCACAATCTTCTGA 57.562 40.909 0.00 0.00 37.88 3.27
2665 4240 1.753649 AGATCTCACATCACCCACGAG 59.246 52.381 0.00 0.00 0.00 4.18
2674 4249 1.003355 CACCCACGAGCAGTCCAAT 60.003 57.895 0.00 0.00 0.00 3.16
2714 4289 4.170292 TCACACTAGTTAAGTCGCCTTC 57.830 45.455 0.00 0.00 35.76 3.46
2715 4290 2.915463 CACACTAGTTAAGTCGCCTTCG 59.085 50.000 0.00 0.00 35.76 3.79
2716 4291 2.816087 ACACTAGTTAAGTCGCCTTCGA 59.184 45.455 0.00 0.00 43.28 3.71
2732 4307 5.175090 CCTTCGAATTCCAAGGCTAAATC 57.825 43.478 17.46 0.00 32.98 2.17
2735 4310 5.818136 TCGAATTCCAAGGCTAAATCTTG 57.182 39.130 0.00 0.00 40.75 3.02
2737 4312 4.142403 CGAATTCCAAGGCTAAATCTTGCA 60.142 41.667 0.00 0.00 40.00 4.08
2738 4313 4.996788 ATTCCAAGGCTAAATCTTGCAG 57.003 40.909 0.00 0.00 40.00 4.41
2748 4323 2.888834 AATCTTGCAGCCGTTTGTTT 57.111 40.000 0.00 0.00 0.00 2.83
2755 4330 2.483583 CAGCCGTTTGTTTGCTGTAA 57.516 45.000 2.69 0.00 45.69 2.41
2762 4338 1.669604 TTGTTTGCTGTAACGGCAGA 58.330 45.000 7.86 0.00 46.84 4.26
2763 4339 1.890876 TGTTTGCTGTAACGGCAGAT 58.109 45.000 7.86 0.00 46.84 2.90
2793 4369 3.845259 GCCGACGATGGGGCTACA 61.845 66.667 0.00 0.00 45.93 2.74
2810 4386 0.544697 ACACACGGGAAAGTTGGAGT 59.455 50.000 0.00 0.00 0.00 3.85
2819 4395 4.010349 GGGAAAGTTGGAGTAGTTGATGG 58.990 47.826 0.00 0.00 0.00 3.51
2826 4402 2.840038 TGGAGTAGTTGATGGACATGCT 59.160 45.455 0.00 0.00 0.00 3.79
2829 4405 3.866651 AGTAGTTGATGGACATGCTGTC 58.133 45.455 7.52 7.52 46.23 3.51
2855 4455 2.048597 CCGGTGCTGCGTGAGTAA 60.049 61.111 0.00 0.00 0.00 2.24
2863 4463 1.729149 GCTGCGTGAGTAAAACATGGC 60.729 52.381 0.00 0.00 0.00 4.40
2879 4479 3.432186 GCGGAAGGCACAAGTTGT 58.568 55.556 1.64 1.64 42.87 3.32
2911 9035 2.887568 GTCACCATCGGCTGAGCG 60.888 66.667 0.00 0.00 0.00 5.03
2939 9064 5.354234 CCATGTGGGTGTCTATTGAAGTTAC 59.646 44.000 0.00 0.00 0.00 2.50
2981 9106 1.453155 CGCCCTGTGCACTTAGATTT 58.547 50.000 19.41 0.00 41.33 2.17
3031 9156 4.592485 ACAGAAGGGATCATACATCGTC 57.408 45.455 0.00 0.00 0.00 4.20
3032 9157 3.960755 ACAGAAGGGATCATACATCGTCA 59.039 43.478 0.00 0.00 0.00 4.35
3033 9158 4.590647 ACAGAAGGGATCATACATCGTCAT 59.409 41.667 0.00 0.00 0.00 3.06
3034 9159 5.070981 ACAGAAGGGATCATACATCGTCATT 59.929 40.000 0.00 0.00 0.00 2.57
3035 9160 5.994054 CAGAAGGGATCATACATCGTCATTT 59.006 40.000 0.00 0.00 0.00 2.32
3036 9161 5.994054 AGAAGGGATCATACATCGTCATTTG 59.006 40.000 0.00 0.00 0.00 2.32
3037 9162 5.551305 AGGGATCATACATCGTCATTTGA 57.449 39.130 0.00 0.00 0.00 2.69
3038 9163 5.545588 AGGGATCATACATCGTCATTTGAG 58.454 41.667 0.00 0.00 0.00 3.02
3039 9164 5.070981 AGGGATCATACATCGTCATTTGAGT 59.929 40.000 0.00 0.00 0.00 3.41
3040 9165 5.178252 GGGATCATACATCGTCATTTGAGTG 59.822 44.000 0.00 0.00 0.00 3.51
3041 9166 5.985530 GGATCATACATCGTCATTTGAGTGA 59.014 40.000 0.00 0.00 0.00 3.41
3042 9167 6.145209 GGATCATACATCGTCATTTGAGTGAG 59.855 42.308 0.00 0.00 0.00 3.51
3043 9168 4.805719 TCATACATCGTCATTTGAGTGAGC 59.194 41.667 0.00 0.00 0.00 4.26
3044 9169 3.044235 ACATCGTCATTTGAGTGAGCA 57.956 42.857 0.00 0.00 0.00 4.26
3045 9170 3.402110 ACATCGTCATTTGAGTGAGCAA 58.598 40.909 0.00 0.00 0.00 3.91
3046 9171 4.005650 ACATCGTCATTTGAGTGAGCAAT 58.994 39.130 0.00 0.00 0.00 3.56
3047 9172 4.456911 ACATCGTCATTTGAGTGAGCAATT 59.543 37.500 0.00 0.00 0.00 2.32
3048 9173 5.048504 ACATCGTCATTTGAGTGAGCAATTT 60.049 36.000 0.00 0.00 0.00 1.82
3049 9174 5.034554 TCGTCATTTGAGTGAGCAATTTC 57.965 39.130 0.00 0.00 0.00 2.17
3050 9175 4.083324 TCGTCATTTGAGTGAGCAATTTCC 60.083 41.667 0.00 0.00 0.00 3.13
3051 9176 4.320421 CGTCATTTGAGTGAGCAATTTCCA 60.320 41.667 0.00 0.00 0.00 3.53
3052 9177 5.159209 GTCATTTGAGTGAGCAATTTCCAG 58.841 41.667 0.00 0.00 0.00 3.86
3053 9178 3.648339 TTTGAGTGAGCAATTTCCAGC 57.352 42.857 0.00 0.00 0.00 4.85
3054 9179 2.574006 TGAGTGAGCAATTTCCAGCT 57.426 45.000 0.00 0.00 45.25 4.24
3055 9180 3.701205 TGAGTGAGCAATTTCCAGCTA 57.299 42.857 0.00 0.00 42.04 3.32
3056 9181 3.338249 TGAGTGAGCAATTTCCAGCTAC 58.662 45.455 0.00 0.00 42.04 3.58
3057 9182 2.349886 GAGTGAGCAATTTCCAGCTACG 59.650 50.000 0.00 0.00 42.04 3.51
3058 9183 1.398390 GTGAGCAATTTCCAGCTACGG 59.602 52.381 0.00 0.00 42.04 4.02
3059 9184 1.277842 TGAGCAATTTCCAGCTACGGA 59.722 47.619 0.00 0.00 42.04 4.69
3060 9185 2.092968 TGAGCAATTTCCAGCTACGGAT 60.093 45.455 0.00 0.00 42.04 4.18
3061 9186 2.945668 GAGCAATTTCCAGCTACGGATT 59.054 45.455 0.00 0.00 42.04 3.01
3062 9187 4.127171 GAGCAATTTCCAGCTACGGATTA 58.873 43.478 0.00 0.00 42.04 1.75
3063 9188 4.718961 AGCAATTTCCAGCTACGGATTAT 58.281 39.130 0.00 0.00 39.78 1.28
3064 9189 5.133221 AGCAATTTCCAGCTACGGATTATT 58.867 37.500 0.00 0.00 39.78 1.40
3065 9190 5.594317 AGCAATTTCCAGCTACGGATTATTT 59.406 36.000 0.00 0.00 39.78 1.40
3066 9191 5.687285 GCAATTTCCAGCTACGGATTATTTG 59.313 40.000 0.00 0.00 34.19 2.32
3067 9192 6.459573 GCAATTTCCAGCTACGGATTATTTGA 60.460 38.462 0.00 0.00 34.19 2.69
3068 9193 7.651808 CAATTTCCAGCTACGGATTATTTGAT 58.348 34.615 0.00 0.00 34.19 2.57
3069 9194 6.618287 TTTCCAGCTACGGATTATTTGATG 57.382 37.500 0.00 0.00 34.19 3.07
3070 9195 4.641396 TCCAGCTACGGATTATTTGATGG 58.359 43.478 0.00 0.00 0.00 3.51
3071 9196 3.189287 CCAGCTACGGATTATTTGATGGC 59.811 47.826 0.00 0.00 0.00 4.40
3103 9271 8.271458 TCATATAGGAAAACATCTGGCTTGTTA 58.729 33.333 2.38 0.00 36.32 2.41
3115 9283 3.476552 TGGCTTGTTAGTTTCACTCCAG 58.523 45.455 0.00 0.00 0.00 3.86
3121 9289 7.011482 GGCTTGTTAGTTTCACTCCAGTATATG 59.989 40.741 0.00 0.00 0.00 1.78
3203 9381 2.569853 TCCCACACGTTATGATGGACTT 59.430 45.455 0.00 0.00 33.61 3.01
3204 9382 3.008594 TCCCACACGTTATGATGGACTTT 59.991 43.478 0.00 0.00 33.61 2.66
3205 9383 3.374058 CCCACACGTTATGATGGACTTTC 59.626 47.826 0.00 0.00 33.61 2.62
3206 9384 3.062099 CCACACGTTATGATGGACTTTCG 59.938 47.826 0.00 0.00 33.61 3.46
3207 9385 2.671396 ACACGTTATGATGGACTTTCGC 59.329 45.455 0.00 0.00 0.00 4.70
3208 9386 2.930040 CACGTTATGATGGACTTTCGCT 59.070 45.455 0.00 0.00 0.00 4.93
3209 9387 3.370978 CACGTTATGATGGACTTTCGCTT 59.629 43.478 0.00 0.00 0.00 4.68
3210 9388 3.617263 ACGTTATGATGGACTTTCGCTTC 59.383 43.478 0.00 0.00 0.00 3.86
3211 9389 3.001330 CGTTATGATGGACTTTCGCTTCC 59.999 47.826 0.00 0.00 0.00 3.46
3212 9390 2.787473 ATGATGGACTTTCGCTTCCA 57.213 45.000 0.00 0.00 46.06 3.53
3213 9391 2.099141 TGATGGACTTTCGCTTCCAG 57.901 50.000 0.00 0.00 45.20 3.86
3214 9392 1.347707 TGATGGACTTTCGCTTCCAGT 59.652 47.619 0.00 0.00 45.20 4.00
3215 9393 2.224523 TGATGGACTTTCGCTTCCAGTT 60.225 45.455 0.00 0.00 45.20 3.16
3216 9394 3.007506 TGATGGACTTTCGCTTCCAGTTA 59.992 43.478 0.00 0.00 45.20 2.24
3217 9395 3.040147 TGGACTTTCGCTTCCAGTTAG 57.960 47.619 0.00 0.00 36.96 2.34
3218 9396 2.631062 TGGACTTTCGCTTCCAGTTAGA 59.369 45.455 0.00 0.00 36.96 2.10
3219 9397 3.254892 GGACTTTCGCTTCCAGTTAGAG 58.745 50.000 0.00 0.00 0.00 2.43
3220 9398 3.306156 GGACTTTCGCTTCCAGTTAGAGT 60.306 47.826 0.00 0.00 0.00 3.24
3221 9399 3.654414 ACTTTCGCTTCCAGTTAGAGTG 58.346 45.455 0.00 0.00 0.00 3.51
3222 9400 2.743636 TTCGCTTCCAGTTAGAGTGG 57.256 50.000 0.00 0.00 40.10 4.00
3223 9401 0.246635 TCGCTTCCAGTTAGAGTGGC 59.753 55.000 0.00 0.00 38.59 5.01
3224 9402 0.741221 CGCTTCCAGTTAGAGTGGCC 60.741 60.000 0.00 0.00 38.59 5.36
3225 9403 0.615850 GCTTCCAGTTAGAGTGGCCT 59.384 55.000 3.32 0.00 38.59 5.19
3226 9404 1.003696 GCTTCCAGTTAGAGTGGCCTT 59.996 52.381 3.32 0.00 38.59 4.35
3227 9405 2.553247 GCTTCCAGTTAGAGTGGCCTTT 60.553 50.000 3.32 0.00 38.59 3.11
3228 9406 2.859165 TCCAGTTAGAGTGGCCTTTG 57.141 50.000 3.32 0.00 38.59 2.77
3229 9407 1.168714 CCAGTTAGAGTGGCCTTTGC 58.831 55.000 3.32 0.00 30.92 3.68
3230 9408 1.271597 CCAGTTAGAGTGGCCTTTGCT 60.272 52.381 3.32 0.00 37.74 3.91
3231 9409 1.808945 CAGTTAGAGTGGCCTTTGCTG 59.191 52.381 3.32 0.00 37.74 4.41
3232 9410 0.523519 GTTAGAGTGGCCTTTGCTGC 59.476 55.000 3.32 0.00 37.74 5.25
3240 9418 2.608640 GCCTTTGCTGCCAGTTTTG 58.391 52.632 0.00 0.00 33.53 2.44
3241 9419 0.104671 GCCTTTGCTGCCAGTTTTGA 59.895 50.000 0.00 0.00 33.53 2.69
3242 9420 1.856802 CCTTTGCTGCCAGTTTTGAC 58.143 50.000 0.00 0.00 0.00 3.18
3243 9421 1.480205 CTTTGCTGCCAGTTTTGACG 58.520 50.000 0.00 0.00 0.00 4.35
3244 9422 0.102120 TTTGCTGCCAGTTTTGACGG 59.898 50.000 0.00 0.00 0.00 4.79
3245 9423 0.749818 TTGCTGCCAGTTTTGACGGA 60.750 50.000 0.00 0.00 0.00 4.69
3246 9424 0.749818 TGCTGCCAGTTTTGACGGAA 60.750 50.000 0.00 0.00 0.00 4.30
3247 9425 0.383949 GCTGCCAGTTTTGACGGAAA 59.616 50.000 0.00 0.00 0.00 3.13
3248 9426 1.000274 GCTGCCAGTTTTGACGGAAAT 60.000 47.619 0.00 0.00 0.00 2.17
3249 9427 2.545742 GCTGCCAGTTTTGACGGAAATT 60.546 45.455 0.00 0.00 0.00 1.82
3250 9428 3.305064 GCTGCCAGTTTTGACGGAAATTA 60.305 43.478 0.00 0.00 0.00 1.40
3251 9429 4.475944 CTGCCAGTTTTGACGGAAATTAG 58.524 43.478 0.00 0.00 0.00 1.73
3252 9430 4.138290 TGCCAGTTTTGACGGAAATTAGA 58.862 39.130 0.00 0.00 0.00 2.10
3253 9431 4.764823 TGCCAGTTTTGACGGAAATTAGAT 59.235 37.500 0.00 0.00 0.00 1.98
3254 9432 5.941058 TGCCAGTTTTGACGGAAATTAGATA 59.059 36.000 0.00 0.00 0.00 1.98
3255 9433 6.601613 TGCCAGTTTTGACGGAAATTAGATAT 59.398 34.615 0.00 0.00 0.00 1.63
3256 9434 7.122055 TGCCAGTTTTGACGGAAATTAGATATT 59.878 33.333 0.00 0.00 0.00 1.28
3257 9435 7.973944 GCCAGTTTTGACGGAAATTAGATATTT 59.026 33.333 0.00 0.00 0.00 1.40
3258 9436 9.855021 CCAGTTTTGACGGAAATTAGATATTTT 57.145 29.630 0.00 0.00 0.00 1.82
3301 9479 9.331282 AGTTTCAATAGATTACATCACTAAGGC 57.669 33.333 0.00 0.00 0.00 4.35
3302 9480 9.331282 GTTTCAATAGATTACATCACTAAGGCT 57.669 33.333 0.00 0.00 0.00 4.58
3303 9481 8.893219 TTCAATAGATTACATCACTAAGGCTG 57.107 34.615 0.00 0.00 0.00 4.85
3304 9482 7.445121 TCAATAGATTACATCACTAAGGCTGG 58.555 38.462 0.00 0.00 0.00 4.85
3305 9483 7.071196 TCAATAGATTACATCACTAAGGCTGGT 59.929 37.037 0.00 0.00 0.00 4.00
3306 9484 8.367911 CAATAGATTACATCACTAAGGCTGGTA 58.632 37.037 0.00 0.00 0.00 3.25
3307 9485 6.808321 AGATTACATCACTAAGGCTGGTAA 57.192 37.500 0.00 0.00 0.00 2.85
3308 9486 6.583562 AGATTACATCACTAAGGCTGGTAAC 58.416 40.000 0.00 0.00 0.00 2.50
3320 9498 3.752796 TGGTAACATAGCGCAGTCC 57.247 52.632 11.47 4.37 46.17 3.85
3321 9499 0.899019 TGGTAACATAGCGCAGTCCA 59.101 50.000 11.47 7.06 46.17 4.02
3322 9500 1.276705 TGGTAACATAGCGCAGTCCAA 59.723 47.619 11.47 0.00 46.17 3.53
3323 9501 1.933853 GGTAACATAGCGCAGTCCAAG 59.066 52.381 11.47 0.00 0.00 3.61
3324 9502 2.418197 GGTAACATAGCGCAGTCCAAGA 60.418 50.000 11.47 0.00 0.00 3.02
3325 9503 1.726853 AACATAGCGCAGTCCAAGAC 58.273 50.000 11.47 0.00 0.00 3.01
3326 9504 0.608130 ACATAGCGCAGTCCAAGACA 59.392 50.000 11.47 0.00 34.60 3.41
3327 9505 1.001974 ACATAGCGCAGTCCAAGACAA 59.998 47.619 11.47 0.00 34.60 3.18
3328 9506 1.662629 CATAGCGCAGTCCAAGACAAG 59.337 52.381 11.47 0.00 34.60 3.16
3329 9507 0.679505 TAGCGCAGTCCAAGACAAGT 59.320 50.000 11.47 0.00 34.60 3.16
3330 9508 0.179045 AGCGCAGTCCAAGACAAGTT 60.179 50.000 11.47 0.00 34.60 2.66
3331 9509 0.663153 GCGCAGTCCAAGACAAGTTT 59.337 50.000 0.30 0.00 34.60 2.66
3332 9510 1.597937 GCGCAGTCCAAGACAAGTTTG 60.598 52.381 0.30 0.00 34.60 2.93
3333 9511 1.597937 CGCAGTCCAAGACAAGTTTGC 60.598 52.381 0.00 0.00 34.60 3.68
3334 9512 1.678101 GCAGTCCAAGACAAGTTTGCT 59.322 47.619 0.00 0.00 34.60 3.91
3335 9513 2.099756 GCAGTCCAAGACAAGTTTGCTT 59.900 45.455 0.00 0.00 34.60 3.91
3336 9514 3.315191 GCAGTCCAAGACAAGTTTGCTTA 59.685 43.478 0.00 0.00 34.60 3.09
3337 9515 4.022849 GCAGTCCAAGACAAGTTTGCTTAT 60.023 41.667 0.00 0.00 34.60 1.73
3338 9516 5.455392 CAGTCCAAGACAAGTTTGCTTATG 58.545 41.667 0.00 0.00 34.60 1.90
3339 9517 5.009010 CAGTCCAAGACAAGTTTGCTTATGT 59.991 40.000 0.00 0.00 34.60 2.29
3340 9518 5.009010 AGTCCAAGACAAGTTTGCTTATGTG 59.991 40.000 0.00 0.00 34.60 3.21
3341 9519 4.278170 TCCAAGACAAGTTTGCTTATGTGG 59.722 41.667 0.00 0.00 32.87 4.17
3342 9520 3.923017 AGACAAGTTTGCTTATGTGGC 57.077 42.857 0.00 0.00 32.87 5.01
3343 9521 3.221771 AGACAAGTTTGCTTATGTGGCA 58.778 40.909 0.00 0.00 37.97 4.92
3344 9522 3.828451 AGACAAGTTTGCTTATGTGGCAT 59.172 39.130 0.00 0.00 39.54 4.40
3345 9523 5.009631 AGACAAGTTTGCTTATGTGGCATA 58.990 37.500 0.00 0.00 39.54 3.14
3346 9524 5.653769 AGACAAGTTTGCTTATGTGGCATAT 59.346 36.000 1.41 1.41 39.54 1.78
3347 9525 6.828273 AGACAAGTTTGCTTATGTGGCATATA 59.172 34.615 0.00 0.00 39.54 0.86
3348 9526 7.503566 AGACAAGTTTGCTTATGTGGCATATAT 59.496 33.333 4.71 0.00 39.54 0.86
3349 9527 8.010733 ACAAGTTTGCTTATGTGGCATATATT 57.989 30.769 4.71 0.00 39.54 1.28
3350 9528 8.477256 ACAAGTTTGCTTATGTGGCATATATTT 58.523 29.630 4.71 0.00 39.54 1.40
3351 9529 9.964303 CAAGTTTGCTTATGTGGCATATATTTA 57.036 29.630 4.71 0.00 39.54 1.40
3378 9556 7.540474 AAGGAGAGATGTGTTTAGAGTAACA 57.460 36.000 0.00 0.00 35.75 2.41
3379 9557 7.726033 AGGAGAGATGTGTTTAGAGTAACAT 57.274 36.000 0.00 0.00 39.93 2.71
3380 9558 8.824756 AGGAGAGATGTGTTTAGAGTAACATA 57.175 34.615 0.00 0.00 39.93 2.29
3381 9559 9.256228 AGGAGAGATGTGTTTAGAGTAACATAA 57.744 33.333 0.00 0.00 39.93 1.90
3397 9575 7.942990 AGTAACATAATACTCTCTCCTTTCCG 58.057 38.462 0.00 0.00 30.26 4.30
3398 9576 5.793030 ACATAATACTCTCTCCTTTCCGG 57.207 43.478 0.00 0.00 0.00 5.14
3399 9577 5.209659 ACATAATACTCTCTCCTTTCCGGT 58.790 41.667 0.00 0.00 0.00 5.28
3400 9578 5.661759 ACATAATACTCTCTCCTTTCCGGTT 59.338 40.000 0.00 0.00 0.00 4.44
3401 9579 6.156429 ACATAATACTCTCTCCTTTCCGGTTT 59.844 38.462 0.00 0.00 0.00 3.27
3402 9580 7.343833 ACATAATACTCTCTCCTTTCCGGTTTA 59.656 37.037 0.00 0.00 0.00 2.01
3403 9581 6.809976 AATACTCTCTCCTTTCCGGTTTAT 57.190 37.500 0.00 0.00 0.00 1.40
3404 9582 7.909485 AATACTCTCTCCTTTCCGGTTTATA 57.091 36.000 0.00 0.00 0.00 0.98
3405 9583 5.855740 ACTCTCTCCTTTCCGGTTTATAG 57.144 43.478 0.00 0.00 0.00 1.31
3406 9584 4.650131 ACTCTCTCCTTTCCGGTTTATAGG 59.350 45.833 0.00 2.55 0.00 2.57
3407 9585 3.965347 TCTCTCCTTTCCGGTTTATAGGG 59.035 47.826 0.00 0.00 0.00 3.53
3408 9586 2.436911 TCTCCTTTCCGGTTTATAGGGC 59.563 50.000 0.00 0.00 0.00 5.19
3409 9587 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
3410 9588 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
3411 9589 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
3412 9590 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
3413 9591 5.133153 TCCTTTCCGGTTTATAGGGCTTATT 59.867 40.000 0.00 0.00 0.00 1.40
3414 9592 5.831525 CCTTTCCGGTTTATAGGGCTTATTT 59.168 40.000 0.00 0.00 0.00 1.40
3415 9593 6.016527 CCTTTCCGGTTTATAGGGCTTATTTC 60.017 42.308 0.00 0.00 0.00 2.17
3416 9594 5.633655 TCCGGTTTATAGGGCTTATTTCA 57.366 39.130 0.00 0.00 0.00 2.69
3417 9595 6.003859 TCCGGTTTATAGGGCTTATTTCAA 57.996 37.500 0.00 0.00 0.00 2.69
3418 9596 6.424883 TCCGGTTTATAGGGCTTATTTCAAA 58.575 36.000 0.00 0.00 0.00 2.69
3419 9597 6.890814 TCCGGTTTATAGGGCTTATTTCAAAA 59.109 34.615 0.00 0.00 0.00 2.44
3420 9598 7.562088 TCCGGTTTATAGGGCTTATTTCAAAAT 59.438 33.333 0.00 0.00 0.00 1.82
3421 9599 8.201464 CCGGTTTATAGGGCTTATTTCAAAATT 58.799 33.333 0.00 0.00 0.00 1.82
3422 9600 9.594478 CGGTTTATAGGGCTTATTTCAAAATTT 57.406 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.249238 CTCCTCCTGCTCCGATTTCG 60.249 60.000 0.00 0.00 39.44 3.46
14 15 0.105778 CCTCCTCCTGCTCCGATTTC 59.894 60.000 0.00 0.00 0.00 2.17
15 16 1.341156 CCCTCCTCCTGCTCCGATTT 61.341 60.000 0.00 0.00 0.00 2.17
16 17 1.764054 CCCTCCTCCTGCTCCGATT 60.764 63.158 0.00 0.00 0.00 3.34
17 18 2.123077 CCCTCCTCCTGCTCCGAT 60.123 66.667 0.00 0.00 0.00 4.18
18 19 3.347590 TCCCTCCTCCTGCTCCGA 61.348 66.667 0.00 0.00 0.00 4.55
46 47 3.083349 CCACCTCCATCGGCTCCA 61.083 66.667 0.00 0.00 0.00 3.86
87 88 1.900545 AACCCCGGAGCAAGCTACTC 61.901 60.000 0.73 7.93 0.00 2.59
94 95 0.893270 CATGTTGAACCCCGGAGCAA 60.893 55.000 0.73 0.00 0.00 3.91
195 198 1.134371 GTTGACCTCCACATAGGCCTC 60.134 57.143 9.68 0.00 40.62 4.70
211 214 4.011517 GGAGGAACCGCCGGTTGA 62.012 66.667 28.68 0.00 46.95 3.18
254 257 1.066114 CACCGAGTTCGACGAAGAGC 61.066 60.000 11.25 0.00 43.02 4.09
260 263 4.394078 TCCGCACCGAGTTCGACG 62.394 66.667 2.59 4.15 43.02 5.12
262 265 0.745486 TATCTCCGCACCGAGTTCGA 60.745 55.000 2.59 0.00 43.02 3.71
270 273 1.611491 CTCCTTCTCTATCTCCGCACC 59.389 57.143 0.00 0.00 0.00 5.01
271 274 1.611491 CCTCCTTCTCTATCTCCGCAC 59.389 57.143 0.00 0.00 0.00 5.34
285 288 2.685380 CACTCCGGCCTCCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
318 348 0.460284 ATGTCGACAATCTCCGTGCC 60.460 55.000 24.13 0.00 0.00 5.01
344 374 4.565166 CGTAGATGATCTAGCTACTCCTCG 59.435 50.000 1.68 0.00 44.22 4.63
368 398 7.258022 TGCAAACGATATAACCTACGTACTA 57.742 36.000 0.00 0.00 38.00 1.82
373 403 4.447724 AGCATGCAAACGATATAACCTACG 59.552 41.667 21.98 0.00 0.00 3.51
381 411 5.978919 CCATACAAAAGCATGCAAACGATAT 59.021 36.000 21.98 7.45 0.00 1.63
386 416 6.308675 CAAATCCATACAAAAGCATGCAAAC 58.691 36.000 21.98 0.00 0.00 2.93
391 421 4.422840 TCGCAAATCCATACAAAAGCATG 58.577 39.130 0.00 0.00 0.00 4.06
411 441 5.769367 TCCGGACATCTCATACTAAATTCG 58.231 41.667 0.00 0.00 0.00 3.34
430 460 3.848272 AATTAACACAACTGCATCCGG 57.152 42.857 0.00 0.00 0.00 5.14
440 470 3.572255 GGGCACTCCTCAAATTAACACAA 59.428 43.478 0.00 0.00 0.00 3.33
491 521 2.173382 CTCAAACGCCCGCGAAAG 59.827 61.111 17.16 0.00 42.83 2.62
492 522 3.350612 CCTCAAACGCCCGCGAAA 61.351 61.111 17.16 0.00 42.83 3.46
509 539 6.094048 ACAGCCGCATATAACAAATATGATCC 59.906 38.462 8.77 0.00 34.74 3.36
511 541 8.040727 TCTACAGCCGCATATAACAAATATGAT 58.959 33.333 8.77 0.00 34.74 2.45
514 544 7.201644 GCATCTACAGCCGCATATAACAAATAT 60.202 37.037 0.00 0.00 0.00 1.28
519 549 3.006859 AGCATCTACAGCCGCATATAACA 59.993 43.478 0.00 0.00 0.00 2.41
524 554 3.894257 GAGCATCTACAGCCGCATA 57.106 52.632 0.00 0.00 0.00 3.14
584 617 1.440938 CCGACCTCTCTACCTCGCTG 61.441 65.000 0.00 0.00 0.00 5.18
592 625 5.360144 CCTTATCTTTTCACCGACCTCTCTA 59.640 44.000 0.00 0.00 0.00 2.43
654 687 2.122769 TCCCCCGGACAACACTGA 60.123 61.111 0.73 0.00 0.00 3.41
694 727 1.247567 AGCTTGAATTCACCGGTTGG 58.752 50.000 2.97 0.00 42.84 3.77
695 728 3.369546 AAAGCTTGAATTCACCGGTTG 57.630 42.857 2.97 0.00 0.00 3.77
697 730 2.296190 GGAAAAGCTTGAATTCACCGGT 59.704 45.455 7.89 0.00 0.00 5.28
708 741 4.099419 AGTTTAACACTGGGGAAAAGCTTG 59.901 41.667 0.00 0.00 32.83 4.01
724 757 1.529865 GACGGTGCACCAGAGTTTAAC 59.470 52.381 34.16 9.50 35.14 2.01
733 766 1.817911 TACCATTCGACGGTGCACCA 61.818 55.000 34.16 16.07 37.33 4.17
757 824 4.126208 CATGCAATTATGGCAGGTTTCA 57.874 40.909 0.00 0.00 45.68 2.69
763 830 4.940463 AGCTAAACATGCAATTATGGCAG 58.060 39.130 0.00 0.00 45.68 4.85
769 836 5.265191 TGGGGTTAGCTAAACATGCAATTA 58.735 37.500 22.62 0.00 40.08 1.40
774 841 4.736126 ATTTGGGGTTAGCTAAACATGC 57.264 40.909 22.62 5.83 40.08 4.06
827 912 1.598676 GGATCACGCGCGTACAGATTA 60.599 52.381 37.24 14.84 0.00 1.75
828 913 0.870307 GGATCACGCGCGTACAGATT 60.870 55.000 37.24 17.43 0.00 2.40
829 914 1.299165 GGATCACGCGCGTACAGAT 60.299 57.895 37.24 31.67 0.00 2.90
830 915 2.000215 ATGGATCACGCGCGTACAGA 62.000 55.000 37.24 28.41 0.00 3.41
891 998 6.709018 ATTTATTCAAAGGTTCATACCCCG 57.291 37.500 0.00 0.00 46.28 5.73
902 1009 8.204160 GGGGGAGTGAATTAATTTATTCAAAGG 58.796 37.037 18.63 0.00 43.88 3.11
908 1054 7.239080 AGGAGGGGGAGTGAATTAATTTATT 57.761 36.000 1.43 0.00 0.00 1.40
926 1072 2.063425 GGGTTAAATAGGGGAGGAGGG 58.937 57.143 0.00 0.00 0.00 4.30
927 1073 1.697982 CGGGTTAAATAGGGGAGGAGG 59.302 57.143 0.00 0.00 0.00 4.30
928 1074 1.071857 GCGGGTTAAATAGGGGAGGAG 59.928 57.143 0.00 0.00 0.00 3.69
990 1159 2.887568 GCGTCCATGGTCTCGCTG 60.888 66.667 28.96 9.47 44.28 5.18
991 1160 4.498520 CGCGTCCATGGTCTCGCT 62.499 66.667 30.87 0.00 45.25 4.93
994 1163 1.078759 CTGTTCGCGTCCATGGTCTC 61.079 60.000 12.58 0.00 0.00 3.36
996 1165 2.740714 GCTGTTCGCGTCCATGGTC 61.741 63.158 12.58 5.07 0.00 4.02
999 1168 2.476051 GTGCTGTTCGCGTCCATG 59.524 61.111 5.77 0.09 43.27 3.66
1322 1491 4.803426 GCGTGGTCTCCCTGAGCG 62.803 72.222 0.00 0.00 45.46 5.03
1374 1543 2.126812 GCAGCGTCGAACGAGTCT 60.127 61.111 10.82 0.00 46.05 3.24
1431 1600 2.003548 GAGCCCATGGAGGTTCCCT 61.004 63.158 15.22 0.00 35.03 4.20
1451 1620 2.171870 TCTGGCAGATGAAGCATGATCA 59.828 45.455 14.43 0.00 0.00 2.92
1464 1633 2.673341 ACGTCGAGCTCTGGCAGA 60.673 61.111 17.68 17.68 41.70 4.26
1467 1636 2.101380 GAGACGTCGAGCTCTGGC 59.899 66.667 12.85 6.13 39.06 4.85
1568 1737 2.266055 CGGACTTGTCCTGGAGCC 59.734 66.667 16.60 0.00 0.00 4.70
1821 2016 3.744719 CCGGAGCCGAACGAGACA 61.745 66.667 11.05 0.00 42.83 3.41
1875 2070 4.154347 GTGAGCTCCAGCCCGAGG 62.154 72.222 12.15 0.00 43.38 4.63
2307 2604 2.269241 GCCGCCACCTTAGCTCTT 59.731 61.111 0.00 0.00 0.00 2.85
2342 2639 2.334006 TCCCTCAAGGAGAGCTTCTT 57.666 50.000 0.00 0.00 40.93 2.52
2407 2704 1.067416 CCTAGCAATACTCGCCGCA 59.933 57.895 0.00 0.00 0.00 5.69
2428 2725 3.075884 GGTTGGATTGCTAACACGGTAA 58.924 45.455 0.00 0.00 37.24 2.85
2429 2726 2.038689 TGGTTGGATTGCTAACACGGTA 59.961 45.455 0.00 0.00 37.24 4.02
2430 2727 1.202830 TGGTTGGATTGCTAACACGGT 60.203 47.619 0.00 0.00 37.24 4.83
2431 2728 1.529226 TGGTTGGATTGCTAACACGG 58.471 50.000 0.00 0.00 37.24 4.94
2432 2729 3.687212 TGTATGGTTGGATTGCTAACACG 59.313 43.478 0.00 0.00 37.24 4.49
2433 2730 5.590259 AGATGTATGGTTGGATTGCTAACAC 59.410 40.000 0.00 0.00 37.24 3.32
2434 2731 5.754782 AGATGTATGGTTGGATTGCTAACA 58.245 37.500 0.00 0.00 37.24 2.41
2435 2732 5.050091 CGAGATGTATGGTTGGATTGCTAAC 60.050 44.000 0.00 0.00 35.02 2.34
2436 2733 5.056480 CGAGATGTATGGTTGGATTGCTAA 58.944 41.667 0.00 0.00 0.00 3.09
2437 2734 4.631131 CGAGATGTATGGTTGGATTGCTA 58.369 43.478 0.00 0.00 0.00 3.49
2440 2737 3.470709 AGCGAGATGTATGGTTGGATTG 58.529 45.455 0.00 0.00 0.00 2.67
2443 2740 2.034179 CGTAGCGAGATGTATGGTTGGA 59.966 50.000 0.00 0.00 0.00 3.53
2445 2742 3.349488 TCGTAGCGAGATGTATGGTTG 57.651 47.619 0.00 0.00 0.00 3.77
2447 2744 3.305403 CCATTCGTAGCGAGATGTATGGT 60.305 47.826 9.66 0.00 35.68 3.55
2449 2746 2.663602 GCCATTCGTAGCGAGATGTATG 59.336 50.000 0.00 0.00 37.14 2.39
2451 2748 1.954382 AGCCATTCGTAGCGAGATGTA 59.046 47.619 0.00 0.00 37.14 2.29
2458 2755 0.508641 GCACATAGCCATTCGTAGCG 59.491 55.000 0.00 0.00 37.23 4.26
2462 2759 2.923121 AGAATGCACATAGCCATTCGT 58.077 42.857 0.00 0.00 44.83 3.85
2464 2761 5.334724 GCTCTTAGAATGCACATAGCCATTC 60.335 44.000 0.00 5.47 44.83 2.67
2465 2762 4.518211 GCTCTTAGAATGCACATAGCCATT 59.482 41.667 0.00 0.00 44.83 3.16
2466 2763 4.070716 GCTCTTAGAATGCACATAGCCAT 58.929 43.478 0.00 0.00 44.83 4.40
2469 2766 7.432350 AAATAGCTCTTAGAATGCACATAGC 57.568 36.000 0.00 0.00 45.96 2.97
2472 2769 6.095860 TGCAAAATAGCTCTTAGAATGCACAT 59.904 34.615 0.00 0.00 36.46 3.21
2480 2777 9.481340 CATAGTGTATGCAAAATAGCTCTTAGA 57.519 33.333 0.00 0.00 34.99 2.10
2481 2778 9.265901 ACATAGTGTATGCAAAATAGCTCTTAG 57.734 33.333 0.00 0.00 39.79 2.18
2486 2881 6.201044 GTCGACATAGTGTATGCAAAATAGCT 59.799 38.462 11.55 0.00 39.79 3.32
2535 2930 0.839946 AGACCAGTGTTGACCTGCTT 59.160 50.000 0.00 0.00 0.00 3.91
2555 2950 0.107459 GAGAGCCCTAACTTGCCCAG 60.107 60.000 0.00 0.00 0.00 4.45
2556 2951 1.899437 CGAGAGCCCTAACTTGCCCA 61.899 60.000 0.00 0.00 0.00 5.36
2587 2982 7.832187 TGGGTCAAGTTATTCCTAAAACCATAG 59.168 37.037 0.00 0.00 0.00 2.23
2591 2993 5.771165 TGTGGGTCAAGTTATTCCTAAAACC 59.229 40.000 0.00 0.00 0.00 3.27
2601 3003 6.126863 TCAGAAGATTGTGGGTCAAGTTAT 57.873 37.500 0.00 0.00 39.55 1.89
2616 3018 7.542025 AGCGCAATAAGAAAAATTCAGAAGAT 58.458 30.769 11.47 0.00 0.00 2.40
2624 4199 8.844244 AGATCTGATAGCGCAATAAGAAAAATT 58.156 29.630 11.47 0.00 0.00 1.82
2665 4240 5.756195 TCAAGCAATGTATATTGGACTGC 57.244 39.130 13.35 0.16 43.12 4.40
2714 4289 4.142403 TGCAAGATTTAGCCTTGGAATTCG 60.142 41.667 0.00 0.00 38.67 3.34
2715 4290 5.329035 TGCAAGATTTAGCCTTGGAATTC 57.671 39.130 0.00 0.00 38.67 2.17
2716 4291 4.382362 GCTGCAAGATTTAGCCTTGGAATT 60.382 41.667 0.00 0.00 40.53 2.17
2717 4292 3.131755 GCTGCAAGATTTAGCCTTGGAAT 59.868 43.478 0.00 0.00 40.53 3.01
2718 4293 2.493278 GCTGCAAGATTTAGCCTTGGAA 59.507 45.455 0.00 0.00 40.53 3.53
2719 4294 2.094675 GCTGCAAGATTTAGCCTTGGA 58.905 47.619 0.00 0.00 40.85 3.53
2720 4295 2.573941 GCTGCAAGATTTAGCCTTGG 57.426 50.000 0.00 0.00 40.85 3.61
2732 4307 0.528249 AGCAAACAAACGGCTGCAAG 60.528 50.000 0.50 0.00 37.26 4.01
2737 4312 1.268335 CGTTACAGCAAACAAACGGCT 60.268 47.619 0.00 0.00 40.63 5.52
2738 4313 1.117234 CGTTACAGCAAACAAACGGC 58.883 50.000 0.00 0.00 40.63 5.68
2748 4323 1.548719 ACAGTATCTGCCGTTACAGCA 59.451 47.619 0.00 0.00 37.59 4.41
2753 4328 1.404986 GCACCACAGTATCTGCCGTTA 60.405 52.381 0.00 0.00 34.37 3.18
2754 4329 0.673644 GCACCACAGTATCTGCCGTT 60.674 55.000 0.00 0.00 34.37 4.44
2755 4330 1.079127 GCACCACAGTATCTGCCGT 60.079 57.895 0.00 0.00 34.37 5.68
2762 4338 2.184322 CGGCGAGCACCACAGTAT 59.816 61.111 0.00 0.00 0.00 2.12
2763 4339 2.986979 TCGGCGAGCACCACAGTA 60.987 61.111 4.99 0.00 0.00 2.74
2783 4359 1.493854 TTTCCCGTGTGTAGCCCCAT 61.494 55.000 0.00 0.00 0.00 4.00
2786 4362 0.250597 AACTTTCCCGTGTGTAGCCC 60.251 55.000 0.00 0.00 0.00 5.19
2792 4368 2.224209 ACTACTCCAACTTTCCCGTGTG 60.224 50.000 0.00 0.00 0.00 3.82
2793 4369 2.044758 ACTACTCCAACTTTCCCGTGT 58.955 47.619 0.00 0.00 0.00 4.49
2847 4447 1.434555 TCCGCCATGTTTTACTCACG 58.565 50.000 0.00 0.00 0.00 4.35
2849 4449 2.432444 CCTTCCGCCATGTTTTACTCA 58.568 47.619 0.00 0.00 0.00 3.41
2855 4455 1.112315 TTGTGCCTTCCGCCATGTTT 61.112 50.000 0.00 0.00 36.24 2.83
2871 4471 1.603802 CTCATTGGCGACACAACTTGT 59.396 47.619 0.00 0.00 42.67 3.16
2883 9007 1.718757 GATGGTGACCGCTCATTGGC 61.719 60.000 0.00 0.00 0.00 4.52
2939 9064 5.171874 CGCATGGATCGTAAATCATTTTGTG 59.828 40.000 0.00 0.00 0.00 3.33
2981 9106 2.879103 CTGGAAGCCCTTTGGACTAA 57.121 50.000 0.00 0.00 0.00 2.24
3006 9131 6.013379 ACGATGTATGATCCCTTCTGTATCT 58.987 40.000 0.00 0.00 0.00 1.98
3031 9156 3.924686 GCTGGAAATTGCTCACTCAAATG 59.075 43.478 0.00 0.00 0.00 2.32
3032 9157 3.830755 AGCTGGAAATTGCTCACTCAAAT 59.169 39.130 0.00 0.00 33.90 2.32
3033 9158 3.225104 AGCTGGAAATTGCTCACTCAAA 58.775 40.909 0.00 0.00 33.90 2.69
3034 9159 2.867624 AGCTGGAAATTGCTCACTCAA 58.132 42.857 0.00 0.00 33.90 3.02
3035 9160 2.574006 AGCTGGAAATTGCTCACTCA 57.426 45.000 0.00 0.00 33.90 3.41
3036 9161 2.349886 CGTAGCTGGAAATTGCTCACTC 59.650 50.000 0.00 0.00 40.35 3.51
3037 9162 2.350522 CGTAGCTGGAAATTGCTCACT 58.649 47.619 0.00 0.00 40.35 3.41
3038 9163 1.398390 CCGTAGCTGGAAATTGCTCAC 59.602 52.381 0.00 0.00 40.35 3.51
3039 9164 1.277842 TCCGTAGCTGGAAATTGCTCA 59.722 47.619 0.00 0.00 40.35 4.26
3040 9165 2.024176 TCCGTAGCTGGAAATTGCTC 57.976 50.000 0.00 0.00 40.35 4.26
3041 9166 2.717639 ATCCGTAGCTGGAAATTGCT 57.282 45.000 0.00 0.00 42.46 3.91
3042 9167 5.438761 AATAATCCGTAGCTGGAAATTGC 57.561 39.130 0.00 0.00 42.46 3.56
3043 9168 7.026631 TCAAATAATCCGTAGCTGGAAATTG 57.973 36.000 0.00 0.98 42.46 2.32
3044 9169 7.255590 CCATCAAATAATCCGTAGCTGGAAATT 60.256 37.037 0.00 0.00 42.46 1.82
3045 9170 6.207417 CCATCAAATAATCCGTAGCTGGAAAT 59.793 38.462 0.00 0.00 42.46 2.17
3046 9171 5.530915 CCATCAAATAATCCGTAGCTGGAAA 59.469 40.000 0.00 0.00 42.46 3.13
3047 9172 5.063204 CCATCAAATAATCCGTAGCTGGAA 58.937 41.667 0.00 0.00 42.46 3.53
3048 9173 4.641396 CCATCAAATAATCCGTAGCTGGA 58.359 43.478 0.00 0.00 43.58 3.86
3049 9174 3.189287 GCCATCAAATAATCCGTAGCTGG 59.811 47.826 0.00 0.00 0.00 4.85
3050 9175 3.814842 TGCCATCAAATAATCCGTAGCTG 59.185 43.478 0.00 0.00 0.00 4.24
3051 9176 3.815401 GTGCCATCAAATAATCCGTAGCT 59.185 43.478 0.00 0.00 0.00 3.32
3052 9177 3.058224 GGTGCCATCAAATAATCCGTAGC 60.058 47.826 0.00 0.00 0.00 3.58
3053 9178 4.133820 TGGTGCCATCAAATAATCCGTAG 58.866 43.478 0.00 0.00 0.00 3.51
3054 9179 4.133820 CTGGTGCCATCAAATAATCCGTA 58.866 43.478 0.00 0.00 0.00 4.02
3055 9180 2.951642 CTGGTGCCATCAAATAATCCGT 59.048 45.455 0.00 0.00 0.00 4.69
3056 9181 2.951642 ACTGGTGCCATCAAATAATCCG 59.048 45.455 0.00 0.00 0.00 4.18
3057 9182 3.953612 TGACTGGTGCCATCAAATAATCC 59.046 43.478 0.00 0.00 0.00 3.01
3058 9183 5.779529 ATGACTGGTGCCATCAAATAATC 57.220 39.130 7.19 0.00 0.00 1.75
3059 9184 7.613022 CCTATATGACTGGTGCCATCAAATAAT 59.387 37.037 7.19 3.85 0.00 1.28
3060 9185 6.942005 CCTATATGACTGGTGCCATCAAATAA 59.058 38.462 7.19 0.00 0.00 1.40
3061 9186 6.272090 TCCTATATGACTGGTGCCATCAAATA 59.728 38.462 7.19 0.00 0.00 1.40
3062 9187 5.073554 TCCTATATGACTGGTGCCATCAAAT 59.926 40.000 7.19 0.00 0.00 2.32
3063 9188 4.411869 TCCTATATGACTGGTGCCATCAAA 59.588 41.667 7.19 0.00 0.00 2.69
3064 9189 3.973305 TCCTATATGACTGGTGCCATCAA 59.027 43.478 7.19 0.98 0.00 2.57
3065 9190 3.586429 TCCTATATGACTGGTGCCATCA 58.414 45.455 0.00 0.00 0.00 3.07
3066 9191 4.623932 TTCCTATATGACTGGTGCCATC 57.376 45.455 0.00 0.00 0.00 3.51
3067 9192 5.133221 GTTTTCCTATATGACTGGTGCCAT 58.867 41.667 0.00 0.00 0.00 4.40
3068 9193 4.018870 TGTTTTCCTATATGACTGGTGCCA 60.019 41.667 0.00 0.00 0.00 4.92
3069 9194 4.523083 TGTTTTCCTATATGACTGGTGCC 58.477 43.478 0.00 0.00 0.00 5.01
3070 9195 6.017605 CAGATGTTTTCCTATATGACTGGTGC 60.018 42.308 0.00 0.00 0.00 5.01
3071 9196 6.484643 CCAGATGTTTTCCTATATGACTGGTG 59.515 42.308 0.00 0.00 37.14 4.17
3122 9290 7.894897 ACTTAGTAGACTATTTAGCTATCCCCC 59.105 40.741 0.00 0.00 0.00 5.40
3123 9291 8.882557 ACTTAGTAGACTATTTAGCTATCCCC 57.117 38.462 0.00 0.00 0.00 4.81
3124 9292 9.743581 AGACTTAGTAGACTATTTAGCTATCCC 57.256 37.037 0.00 0.00 0.00 3.85
3193 9371 2.026822 ACTGGAAGCGAAAGTCCATCAT 60.027 45.455 0.00 0.00 42.99 2.45
3203 9381 1.337823 GCCACTCTAACTGGAAGCGAA 60.338 52.381 0.00 0.00 37.60 4.70
3204 9382 0.246635 GCCACTCTAACTGGAAGCGA 59.753 55.000 0.00 0.00 37.60 4.93
3205 9383 0.741221 GGCCACTCTAACTGGAAGCG 60.741 60.000 0.00 0.00 37.60 4.68
3206 9384 0.615850 AGGCCACTCTAACTGGAAGC 59.384 55.000 5.01 0.00 37.60 3.86
3207 9385 3.077359 CAAAGGCCACTCTAACTGGAAG 58.923 50.000 5.01 0.00 42.29 3.46
3208 9386 2.814097 GCAAAGGCCACTCTAACTGGAA 60.814 50.000 5.01 0.00 0.00 3.53
3209 9387 1.271379 GCAAAGGCCACTCTAACTGGA 60.271 52.381 5.01 0.00 0.00 3.86
3210 9388 1.168714 GCAAAGGCCACTCTAACTGG 58.831 55.000 5.01 0.00 0.00 4.00
3211 9389 1.808945 CAGCAAAGGCCACTCTAACTG 59.191 52.381 5.01 0.00 42.56 3.16
3212 9390 1.884067 GCAGCAAAGGCCACTCTAACT 60.884 52.381 5.01 0.00 42.56 2.24
3213 9391 0.523519 GCAGCAAAGGCCACTCTAAC 59.476 55.000 5.01 0.00 42.56 2.34
3214 9392 2.946947 GCAGCAAAGGCCACTCTAA 58.053 52.632 5.01 0.00 42.56 2.10
3215 9393 4.722193 GCAGCAAAGGCCACTCTA 57.278 55.556 5.01 0.00 42.56 2.43
3222 9400 0.104671 TCAAAACTGGCAGCAAAGGC 59.895 50.000 15.89 0.00 41.61 4.35
3223 9401 1.856802 GTCAAAACTGGCAGCAAAGG 58.143 50.000 15.89 0.69 0.00 3.11
3224 9402 1.480205 CGTCAAAACTGGCAGCAAAG 58.520 50.000 15.89 2.68 0.00 2.77
3225 9403 0.102120 CCGTCAAAACTGGCAGCAAA 59.898 50.000 15.89 0.00 0.00 3.68
3226 9404 0.749818 TCCGTCAAAACTGGCAGCAA 60.750 50.000 15.89 0.00 0.00 3.91
3227 9405 0.749818 TTCCGTCAAAACTGGCAGCA 60.750 50.000 15.89 0.00 0.00 4.41
3228 9406 0.383949 TTTCCGTCAAAACTGGCAGC 59.616 50.000 15.89 0.00 0.00 5.25
3229 9407 3.369546 AATTTCCGTCAAAACTGGCAG 57.630 42.857 14.16 14.16 0.00 4.85
3230 9408 4.138290 TCTAATTTCCGTCAAAACTGGCA 58.862 39.130 0.00 0.00 0.00 4.92
3231 9409 4.759516 TCTAATTTCCGTCAAAACTGGC 57.240 40.909 0.00 0.00 0.00 4.85
3232 9410 9.855021 AAAATATCTAATTTCCGTCAAAACTGG 57.145 29.630 0.00 0.00 0.00 4.00
3275 9453 9.331282 GCCTTAGTGATGTAATCTATTGAAACT 57.669 33.333 0.00 0.00 45.81 2.66
3276 9454 9.331282 AGCCTTAGTGATGTAATCTATTGAAAC 57.669 33.333 0.00 0.00 45.81 2.78
3277 9455 9.330063 CAGCCTTAGTGATGTAATCTATTGAAA 57.670 33.333 0.00 0.00 45.81 2.69
3278 9456 7.933577 CCAGCCTTAGTGATGTAATCTATTGAA 59.066 37.037 0.00 0.00 45.81 2.69
3279 9457 7.071196 ACCAGCCTTAGTGATGTAATCTATTGA 59.929 37.037 0.00 0.00 45.81 2.57
3280 9458 7.220030 ACCAGCCTTAGTGATGTAATCTATTG 58.780 38.462 0.00 0.00 45.81 1.90
3281 9459 7.380423 ACCAGCCTTAGTGATGTAATCTATT 57.620 36.000 0.00 0.00 45.81 1.73
3282 9460 8.368668 GTTACCAGCCTTAGTGATGTAATCTAT 58.631 37.037 0.00 0.00 45.81 1.98
3283 9461 7.343574 TGTTACCAGCCTTAGTGATGTAATCTA 59.656 37.037 0.00 0.00 45.81 1.98
3284 9462 6.156256 TGTTACCAGCCTTAGTGATGTAATCT 59.844 38.462 0.00 0.00 45.81 2.40
3285 9463 6.346096 TGTTACCAGCCTTAGTGATGTAATC 58.654 40.000 0.00 0.00 45.83 1.75
3286 9464 6.308015 TGTTACCAGCCTTAGTGATGTAAT 57.692 37.500 0.00 0.00 0.00 1.89
3287 9465 5.748670 TGTTACCAGCCTTAGTGATGTAA 57.251 39.130 0.00 0.00 0.00 2.41
3288 9466 5.950544 ATGTTACCAGCCTTAGTGATGTA 57.049 39.130 0.00 0.00 0.00 2.29
3289 9467 4.844349 ATGTTACCAGCCTTAGTGATGT 57.156 40.909 0.00 0.00 0.00 3.06
3290 9468 4.752101 GCTATGTTACCAGCCTTAGTGATG 59.248 45.833 0.00 0.00 0.00 3.07
3291 9469 4.501571 CGCTATGTTACCAGCCTTAGTGAT 60.502 45.833 1.35 0.00 34.15 3.06
3292 9470 3.181479 CGCTATGTTACCAGCCTTAGTGA 60.181 47.826 1.35 0.00 34.15 3.41
3293 9471 3.123804 CGCTATGTTACCAGCCTTAGTG 58.876 50.000 1.35 0.00 34.15 2.74
3294 9472 2.483188 GCGCTATGTTACCAGCCTTAGT 60.483 50.000 0.00 0.00 34.15 2.24
3295 9473 2.135933 GCGCTATGTTACCAGCCTTAG 58.864 52.381 0.00 0.00 34.15 2.18
3296 9474 1.483004 TGCGCTATGTTACCAGCCTTA 59.517 47.619 9.73 0.00 34.15 2.69
3297 9475 0.251916 TGCGCTATGTTACCAGCCTT 59.748 50.000 9.73 0.00 34.15 4.35
3298 9476 0.179073 CTGCGCTATGTTACCAGCCT 60.179 55.000 9.73 0.00 34.15 4.58
3299 9477 0.462047 ACTGCGCTATGTTACCAGCC 60.462 55.000 9.73 0.00 34.15 4.85
3300 9478 0.931005 GACTGCGCTATGTTACCAGC 59.069 55.000 9.73 0.00 0.00 4.85
3301 9479 1.134818 TGGACTGCGCTATGTTACCAG 60.135 52.381 9.73 0.00 0.00 4.00
3302 9480 0.899019 TGGACTGCGCTATGTTACCA 59.101 50.000 9.73 6.99 0.00 3.25
3303 9481 1.933853 CTTGGACTGCGCTATGTTACC 59.066 52.381 9.73 4.45 0.00 2.85
3304 9482 2.603560 GTCTTGGACTGCGCTATGTTAC 59.396 50.000 9.73 3.60 0.00 2.50
3305 9483 2.232696 TGTCTTGGACTGCGCTATGTTA 59.767 45.455 9.73 0.00 33.15 2.41
3306 9484 1.001974 TGTCTTGGACTGCGCTATGTT 59.998 47.619 9.73 0.00 33.15 2.71
3307 9485 0.608130 TGTCTTGGACTGCGCTATGT 59.392 50.000 9.73 4.80 33.15 2.29
3308 9486 1.662629 CTTGTCTTGGACTGCGCTATG 59.337 52.381 9.73 0.99 33.15 2.23
3309 9487 1.276421 ACTTGTCTTGGACTGCGCTAT 59.724 47.619 9.73 0.00 33.15 2.97
3310 9488 0.679505 ACTTGTCTTGGACTGCGCTA 59.320 50.000 9.73 0.00 33.15 4.26
3311 9489 0.179045 AACTTGTCTTGGACTGCGCT 60.179 50.000 9.73 0.00 33.15 5.92
3312 9490 0.663153 AAACTTGTCTTGGACTGCGC 59.337 50.000 0.00 0.00 33.15 6.09
3313 9491 1.597937 GCAAACTTGTCTTGGACTGCG 60.598 52.381 0.00 0.00 33.15 5.18
3314 9492 1.678101 AGCAAACTTGTCTTGGACTGC 59.322 47.619 0.00 0.98 33.15 4.40
3315 9493 5.009010 ACATAAGCAAACTTGTCTTGGACTG 59.991 40.000 8.46 0.00 36.57 3.51
3316 9494 5.009010 CACATAAGCAAACTTGTCTTGGACT 59.991 40.000 8.46 0.00 36.57 3.85
3317 9495 5.215160 CACATAAGCAAACTTGTCTTGGAC 58.785 41.667 8.46 0.00 36.57 4.02
3318 9496 4.278170 CCACATAAGCAAACTTGTCTTGGA 59.722 41.667 8.46 0.00 36.57 3.53
3319 9497 4.549458 CCACATAAGCAAACTTGTCTTGG 58.451 43.478 8.46 0.00 36.57 3.61
3320 9498 3.983344 GCCACATAAGCAAACTTGTCTTG 59.017 43.478 8.46 0.00 36.57 3.02
3321 9499 3.636300 TGCCACATAAGCAAACTTGTCTT 59.364 39.130 0.00 5.07 37.28 3.01
3322 9500 3.221771 TGCCACATAAGCAAACTTGTCT 58.778 40.909 0.00 0.00 37.28 3.41
3323 9501 3.641437 TGCCACATAAGCAAACTTGTC 57.359 42.857 0.00 0.00 37.28 3.18
3324 9502 5.920193 ATATGCCACATAAGCAAACTTGT 57.080 34.783 0.00 0.00 44.83 3.16
3325 9503 8.876275 AAATATATGCCACATAAGCAAACTTG 57.124 30.769 0.00 0.00 44.83 3.16
3352 9530 9.256228 TGTTACTCTAAACACATCTCTCCTTAT 57.744 33.333 0.00 0.00 34.50 1.73
3353 9531 8.645814 TGTTACTCTAAACACATCTCTCCTTA 57.354 34.615 0.00 0.00 34.50 2.69
3354 9532 7.540474 TGTTACTCTAAACACATCTCTCCTT 57.460 36.000 0.00 0.00 34.50 3.36
3355 9533 7.726033 ATGTTACTCTAAACACATCTCTCCT 57.274 36.000 0.00 0.00 41.89 3.69
3371 9549 8.077386 CGGAAAGGAGAGAGTATTATGTTACTC 58.923 40.741 8.21 8.21 45.57 2.59
3372 9550 7.014422 CCGGAAAGGAGAGAGTATTATGTTACT 59.986 40.741 0.00 0.00 45.00 2.24
3373 9551 7.146648 CCGGAAAGGAGAGAGTATTATGTTAC 58.853 42.308 0.00 0.00 45.00 2.50
3374 9552 6.837568 ACCGGAAAGGAGAGAGTATTATGTTA 59.162 38.462 9.46 0.00 45.00 2.41
3375 9553 5.661759 ACCGGAAAGGAGAGAGTATTATGTT 59.338 40.000 9.46 0.00 45.00 2.71
3376 9554 5.209659 ACCGGAAAGGAGAGAGTATTATGT 58.790 41.667 9.46 0.00 45.00 2.29
3377 9555 5.793030 ACCGGAAAGGAGAGAGTATTATG 57.207 43.478 9.46 0.00 45.00 1.90
3378 9556 6.809976 AAACCGGAAAGGAGAGAGTATTAT 57.190 37.500 9.46 0.00 45.00 1.28
3379 9557 7.909485 ATAAACCGGAAAGGAGAGAGTATTA 57.091 36.000 9.46 0.00 45.00 0.98
3380 9558 6.809976 ATAAACCGGAAAGGAGAGAGTATT 57.190 37.500 9.46 0.00 45.00 1.89
3381 9559 6.494146 CCTATAAACCGGAAAGGAGAGAGTAT 59.506 42.308 9.46 0.00 45.00 2.12
3382 9560 5.832060 CCTATAAACCGGAAAGGAGAGAGTA 59.168 44.000 9.46 0.00 45.00 2.59
3383 9561 4.650131 CCTATAAACCGGAAAGGAGAGAGT 59.350 45.833 9.46 0.00 45.00 3.24
3384 9562 4.039366 CCCTATAAACCGGAAAGGAGAGAG 59.961 50.000 9.46 0.00 45.00 3.20
3385 9563 3.965347 CCCTATAAACCGGAAAGGAGAGA 59.035 47.826 9.46 0.00 45.00 3.10
3386 9564 3.494573 GCCCTATAAACCGGAAAGGAGAG 60.495 52.174 9.46 0.00 45.00 3.20
3387 9565 2.436911 GCCCTATAAACCGGAAAGGAGA 59.563 50.000 9.46 0.00 45.00 3.71
3388 9566 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
3389 9567 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
3391 9569 6.544564 TGAAATAAGCCCTATAAACCGGAAAG 59.455 38.462 9.46 0.00 0.00 2.62
3392 9570 6.424883 TGAAATAAGCCCTATAAACCGGAAA 58.575 36.000 9.46 0.00 0.00 3.13
3393 9571 6.003859 TGAAATAAGCCCTATAAACCGGAA 57.996 37.500 9.46 0.00 0.00 4.30
3394 9572 5.633655 TGAAATAAGCCCTATAAACCGGA 57.366 39.130 9.46 0.00 0.00 5.14
3395 9573 6.702716 TTTGAAATAAGCCCTATAAACCGG 57.297 37.500 0.00 0.00 0.00 5.28
3396 9574 9.594478 AAATTTTGAAATAAGCCCTATAAACCG 57.406 29.630 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.