Multiple sequence alignment - TraesCS3D01G031700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G031700 chr3D 100.000 3338 0 0 1 3338 11599667 11603004 0.000000e+00 6165.0
1 TraesCS3D01G031700 chr3D 81.058 359 37 9 1272 1628 11592750 11593079 1.190000e-64 257.0
2 TraesCS3D01G031700 chr3D 97.368 38 1 0 577 614 523338303 523338266 7.730000e-07 65.8
3 TraesCS3D01G031700 chr3D 94.872 39 1 1 577 614 580908909 580908871 3.600000e-05 60.2
4 TraesCS3D01G031700 chr3B 92.074 2107 112 21 1256 3338 16333617 16335692 0.000000e+00 2915.0
5 TraesCS3D01G031700 chr3B 94.231 624 28 7 51 667 16332202 16332824 0.000000e+00 946.0
6 TraesCS3D01G031700 chr3B 92.357 471 33 2 2118 2586 20384840 20384371 0.000000e+00 667.0
7 TraesCS3D01G031700 chr3B 94.236 347 20 0 912 1258 16333194 16333540 6.340000e-147 531.0
8 TraesCS3D01G031700 chr3B 85.515 359 42 8 1272 1628 16324795 16325145 1.890000e-97 366.0
9 TraesCS3D01G031700 chr3B 85.278 360 47 4 1272 1631 20383553 20383200 1.890000e-97 366.0
10 TraesCS3D01G031700 chr3B 96.350 137 4 1 779 914 444989001 444989137 1.210000e-54 224.0
11 TraesCS3D01G031700 chr3B 93.893 131 8 0 776 906 735191007 735191137 7.300000e-47 198.0
12 TraesCS3D01G031700 chr3B 94.565 92 5 0 3 94 85338119 85338028 3.470000e-30 143.0
13 TraesCS3D01G031700 chr3B 89.362 94 9 1 3 95 26658923 26659016 2.100000e-22 117.0
14 TraesCS3D01G031700 chr3B 89.247 93 10 0 3 95 34696565 34696473 2.100000e-22 117.0
15 TraesCS3D01G031700 chr3A 84.973 366 42 10 1272 1631 25388954 25388596 3.170000e-95 359.0
16 TraesCS3D01G031700 chr3A 94.074 135 8 0 777 911 744219122 744219256 4.370000e-49 206.0
17 TraesCS3D01G031700 chr3A 93.333 135 9 0 777 911 744198057 744198191 2.030000e-47 200.0
18 TraesCS3D01G031700 chr3A 93.478 46 2 1 577 622 635393891 635393847 2.150000e-07 67.6
19 TraesCS3D01G031700 chr1B 95.000 140 7 0 773 912 6569251 6569112 1.560000e-53 220.0
20 TraesCS3D01G031700 chr1B 96.296 135 4 1 775 909 656185894 656186027 1.560000e-53 220.0
21 TraesCS3D01G031700 chr6B 94.161 137 7 1 777 912 661463493 661463629 1.210000e-49 207.0
22 TraesCS3D01G031700 chr1A 93.056 144 6 4 779 921 316956297 316956157 1.210000e-49 207.0
23 TraesCS3D01G031700 chr4B 93.382 136 9 0 777 912 615197439 615197304 5.650000e-48 202.0
24 TraesCS3D01G031700 chr7B 90.083 121 12 0 1508 1628 12966925 12967045 1.240000e-34 158.0
25 TraesCS3D01G031700 chr1D 96.774 93 3 0 3 95 231021194 231021102 4.460000e-34 156.0
26 TraesCS3D01G031700 chr5D 93.548 93 6 0 3 95 480858443 480858535 4.490000e-29 139.0
27 TraesCS3D01G031700 chr5D 89.247 93 10 0 3 95 560466238 560466330 2.100000e-22 117.0
28 TraesCS3D01G031700 chr7D 91.398 93 8 0 3 95 244451547 244451455 9.720000e-26 128.0
29 TraesCS3D01G031700 chr7D 95.556 45 0 2 576 619 60602765 60602722 1.660000e-08 71.3
30 TraesCS3D01G031700 chr7D 93.333 45 3 0 96 140 26539470 26539426 2.150000e-07 67.6
31 TraesCS3D01G031700 chr2A 91.398 93 8 0 3 95 267885440 267885348 9.720000e-26 128.0
32 TraesCS3D01G031700 chr2A 100.000 52 0 0 2187 2238 741990046 741989995 2.740000e-16 97.1
33 TraesCS3D01G031700 chr2A 100.000 37 0 0 578 614 78767716 78767752 5.980000e-08 69.4
34 TraesCS3D01G031700 chr4D 90.323 93 9 0 3 95 146032645 146032737 4.520000e-24 122.0
35 TraesCS3D01G031700 chr7A 88.372 86 9 1 3 88 722882049 722881965 5.890000e-18 102.0
36 TraesCS3D01G031700 chr2B 87.356 87 11 0 3 89 794544228 794544314 2.120000e-17 100.0
37 TraesCS3D01G031700 chr2B 95.556 45 1 1 578 621 19081545 19081501 1.660000e-08 71.3
38 TraesCS3D01G031700 chr5A 95.455 44 2 0 94 137 599977022 599977065 1.660000e-08 71.3
39 TraesCS3D01G031700 chr5A 93.478 46 3 0 94 139 2394457 2394412 5.980000e-08 69.4
40 TraesCS3D01G031700 chr5B 100.000 37 0 0 578 614 591493524 591493560 5.980000e-08 69.4
41 TraesCS3D01G031700 chrUn 93.478 46 1 2 94 138 12477118 12477162 2.150000e-07 67.6
42 TraesCS3D01G031700 chr2D 93.333 45 3 0 94 138 417558142 417558098 2.150000e-07 67.6
43 TraesCS3D01G031700 chr4A 95.122 41 2 0 578 618 677356660 677356620 7.730000e-07 65.8
44 TraesCS3D01G031700 chr4A 93.182 44 3 0 94 137 737468548 737468505 7.730000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G031700 chr3D 11599667 11603004 3337 False 6165.0 6165 100.000000 1 3338 1 chr3D.!!$F2 3337
1 TraesCS3D01G031700 chr3B 16332202 16335692 3490 False 1464.0 2915 93.513667 51 3338 3 chr3B.!!$F5 3287
2 TraesCS3D01G031700 chr3B 20383200 20384840 1640 True 516.5 667 88.817500 1272 2586 2 chr3B.!!$R3 1314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 913 0.107831 TCCACCTCAACCGAACAAGG 59.892 55.0 0.0 0.0 34.94 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2564 2784 0.107703 CCTCTAGATGCCGGCACAAA 60.108 55.0 35.5 18.79 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.689612 TGTAACATGCTCCCTCTTATCC 57.310 45.455 0.00 0.00 0.00 2.59
22 23 3.391296 TGTAACATGCTCCCTCTTATCCC 59.609 47.826 0.00 0.00 0.00 3.85
23 24 2.196742 ACATGCTCCCTCTTATCCCA 57.803 50.000 0.00 0.00 0.00 4.37
24 25 2.711174 ACATGCTCCCTCTTATCCCAT 58.289 47.619 0.00 0.00 0.00 4.00
25 26 2.641815 ACATGCTCCCTCTTATCCCATC 59.358 50.000 0.00 0.00 0.00 3.51
26 27 2.803285 TGCTCCCTCTTATCCCATCT 57.197 50.000 0.00 0.00 0.00 2.90
27 28 3.066208 TGCTCCCTCTTATCCCATCTT 57.934 47.619 0.00 0.00 0.00 2.40
28 29 3.397527 TGCTCCCTCTTATCCCATCTTT 58.602 45.455 0.00 0.00 0.00 2.52
29 30 3.788142 TGCTCCCTCTTATCCCATCTTTT 59.212 43.478 0.00 0.00 0.00 2.27
30 31 4.141390 TGCTCCCTCTTATCCCATCTTTTC 60.141 45.833 0.00 0.00 0.00 2.29
31 32 4.141390 GCTCCCTCTTATCCCATCTTTTCA 60.141 45.833 0.00 0.00 0.00 2.69
32 33 5.372373 CTCCCTCTTATCCCATCTTTTCAC 58.628 45.833 0.00 0.00 0.00 3.18
33 34 4.166144 TCCCTCTTATCCCATCTTTTCACC 59.834 45.833 0.00 0.00 0.00 4.02
34 35 4.166919 CCCTCTTATCCCATCTTTTCACCT 59.833 45.833 0.00 0.00 0.00 4.00
35 36 5.369699 CCCTCTTATCCCATCTTTTCACCTA 59.630 44.000 0.00 0.00 0.00 3.08
36 37 6.126478 CCCTCTTATCCCATCTTTTCACCTAA 60.126 42.308 0.00 0.00 0.00 2.69
37 38 6.995091 CCTCTTATCCCATCTTTTCACCTAAG 59.005 42.308 0.00 0.00 0.00 2.18
38 39 7.147479 CCTCTTATCCCATCTTTTCACCTAAGA 60.147 40.741 0.00 0.00 36.18 2.10
39 40 7.796054 TCTTATCCCATCTTTTCACCTAAGAG 58.204 38.462 0.00 0.00 35.28 2.85
40 41 4.844349 TCCCATCTTTTCACCTAAGAGG 57.156 45.455 0.00 0.00 42.49 3.69
62 63 8.973182 AGAGGTAAGAAGGTAAGAGTTAATCAG 58.027 37.037 0.00 0.00 0.00 2.90
83 84 9.739276 AATCAGACCACTAGTTAATCAAATCAA 57.261 29.630 0.00 0.00 0.00 2.57
99 100 5.298527 TCAAATCAATGGCTCAGATCATGTC 59.701 40.000 0.00 0.00 0.00 3.06
160 161 6.201044 CCTTACACCGAAGCTTGATAGTTATG 59.799 42.308 2.10 0.00 0.00 1.90
208 209 9.607285 GTTAATTAGATTTATGCACCCATAACG 57.393 33.333 0.00 0.00 42.11 3.18
217 218 1.933853 GCACCCATAACGCTCTACAAG 59.066 52.381 0.00 0.00 0.00 3.16
218 219 2.677037 GCACCCATAACGCTCTACAAGT 60.677 50.000 0.00 0.00 0.00 3.16
222 223 4.454504 ACCCATAACGCTCTACAAGTTTTG 59.545 41.667 0.00 0.00 0.00 2.44
344 347 8.421249 AAATTTGAACTGAGACCCATCATAAA 57.579 30.769 0.00 0.00 0.00 1.40
563 570 8.279970 TCCCATCAAATGACTGTACTTATTTG 57.720 34.615 13.53 13.53 40.23 2.32
574 581 7.860373 TGACTGTACTTATTTGTTGTTTGCATC 59.140 33.333 0.00 0.00 0.00 3.91
608 615 5.991328 ATGCACTACATTATGAAACGGAG 57.009 39.130 0.00 0.00 34.40 4.63
625 633 5.509832 ACGGAGGGAGTTTAATTTAACCT 57.490 39.130 3.79 0.00 0.00 3.50
671 679 8.860088 ACCCAATTATGAAATATTTCTACTGGC 58.140 33.333 24.77 2.38 38.02 4.85
672 680 8.859090 CCCAATTATGAAATATTTCTACTGGCA 58.141 33.333 24.77 7.66 38.02 4.92
699 707 7.775053 TTTTTAAATGTGACTAGCCCTGATT 57.225 32.000 0.00 0.00 0.00 2.57
700 708 8.871629 TTTTTAAATGTGACTAGCCCTGATTA 57.128 30.769 0.00 0.00 0.00 1.75
701 709 8.506168 TTTTAAATGTGACTAGCCCTGATTAG 57.494 34.615 0.00 0.00 0.00 1.73
702 710 5.700402 AAATGTGACTAGCCCTGATTAGT 57.300 39.130 0.00 0.00 33.00 2.24
703 711 4.679373 ATGTGACTAGCCCTGATTAGTG 57.321 45.455 0.00 0.00 30.58 2.74
704 712 2.766263 TGTGACTAGCCCTGATTAGTGG 59.234 50.000 0.00 0.00 30.58 4.00
705 713 3.031736 GTGACTAGCCCTGATTAGTGGA 58.968 50.000 0.00 0.00 30.58 4.02
706 714 3.451178 GTGACTAGCCCTGATTAGTGGAA 59.549 47.826 0.00 0.00 30.58 3.53
707 715 3.706594 TGACTAGCCCTGATTAGTGGAAG 59.293 47.826 0.00 0.00 30.58 3.46
708 716 3.961408 GACTAGCCCTGATTAGTGGAAGA 59.039 47.826 0.00 0.00 30.58 2.87
709 717 4.561752 ACTAGCCCTGATTAGTGGAAGAT 58.438 43.478 0.00 0.00 0.00 2.40
710 718 3.853355 AGCCCTGATTAGTGGAAGATG 57.147 47.619 0.00 0.00 0.00 2.90
711 719 3.387962 AGCCCTGATTAGTGGAAGATGA 58.612 45.455 0.00 0.00 0.00 2.92
712 720 3.782523 AGCCCTGATTAGTGGAAGATGAA 59.217 43.478 0.00 0.00 0.00 2.57
713 721 4.228210 AGCCCTGATTAGTGGAAGATGAAA 59.772 41.667 0.00 0.00 0.00 2.69
714 722 4.336713 GCCCTGATTAGTGGAAGATGAAAC 59.663 45.833 0.00 0.00 0.00 2.78
715 723 4.884164 CCCTGATTAGTGGAAGATGAAACC 59.116 45.833 0.00 0.00 0.00 3.27
716 724 5.500234 CCTGATTAGTGGAAGATGAAACCA 58.500 41.667 0.00 0.00 0.00 3.67
717 725 5.945784 CCTGATTAGTGGAAGATGAAACCAA 59.054 40.000 0.00 0.00 35.40 3.67
718 726 6.434028 CCTGATTAGTGGAAGATGAAACCAAA 59.566 38.462 0.00 0.00 35.40 3.28
719 727 7.362401 CCTGATTAGTGGAAGATGAAACCAAAG 60.362 40.741 0.00 0.00 35.40 2.77
720 728 7.230747 TGATTAGTGGAAGATGAAACCAAAGA 58.769 34.615 0.00 0.00 35.40 2.52
721 729 7.723616 TGATTAGTGGAAGATGAAACCAAAGAA 59.276 33.333 0.00 0.00 35.40 2.52
722 730 7.510549 TTAGTGGAAGATGAAACCAAAGAAG 57.489 36.000 0.00 0.00 35.40 2.85
723 731 5.694995 AGTGGAAGATGAAACCAAAGAAGA 58.305 37.500 0.00 0.00 35.40 2.87
724 732 6.310149 AGTGGAAGATGAAACCAAAGAAGAT 58.690 36.000 0.00 0.00 35.40 2.40
725 733 7.461749 AGTGGAAGATGAAACCAAAGAAGATA 58.538 34.615 0.00 0.00 35.40 1.98
726 734 7.944554 AGTGGAAGATGAAACCAAAGAAGATAA 59.055 33.333 0.00 0.00 35.40 1.75
727 735 8.023706 GTGGAAGATGAAACCAAAGAAGATAAC 58.976 37.037 0.00 0.00 35.40 1.89
728 736 7.723616 TGGAAGATGAAACCAAAGAAGATAACA 59.276 33.333 0.00 0.00 0.00 2.41
729 737 8.743714 GGAAGATGAAACCAAAGAAGATAACAT 58.256 33.333 0.00 0.00 0.00 2.71
732 740 9.965902 AGATGAAACCAAAGAAGATAACATACT 57.034 29.630 0.00 0.00 0.00 2.12
735 743 9.567776 TGAAACCAAAGAAGATAACATACTTCA 57.432 29.630 0.00 0.00 43.13 3.02
743 751 9.628500 AAGAAGATAACATACTTCATTAACCCC 57.372 33.333 0.00 0.00 43.13 4.95
744 752 8.218488 AGAAGATAACATACTTCATTAACCCCC 58.782 37.037 0.00 0.00 43.13 5.40
765 773 2.694616 CCCCCTCCCAAGAAGAAAAA 57.305 50.000 0.00 0.00 0.00 1.94
766 774 2.248248 CCCCCTCCCAAGAAGAAAAAC 58.752 52.381 0.00 0.00 0.00 2.43
767 775 2.425683 CCCCCTCCCAAGAAGAAAAACA 60.426 50.000 0.00 0.00 0.00 2.83
768 776 2.893489 CCCCTCCCAAGAAGAAAAACAG 59.107 50.000 0.00 0.00 0.00 3.16
769 777 3.436470 CCCCTCCCAAGAAGAAAAACAGA 60.436 47.826 0.00 0.00 0.00 3.41
770 778 3.570125 CCCTCCCAAGAAGAAAAACAGAC 59.430 47.826 0.00 0.00 0.00 3.51
771 779 4.464947 CCTCCCAAGAAGAAAAACAGACT 58.535 43.478 0.00 0.00 0.00 3.24
772 780 4.889995 CCTCCCAAGAAGAAAAACAGACTT 59.110 41.667 0.00 0.00 0.00 3.01
773 781 5.009110 CCTCCCAAGAAGAAAAACAGACTTC 59.991 44.000 0.00 0.00 39.87 3.01
774 782 5.505780 TCCCAAGAAGAAAAACAGACTTCA 58.494 37.500 0.00 0.00 41.37 3.02
775 783 6.129179 TCCCAAGAAGAAAAACAGACTTCAT 58.871 36.000 0.00 0.00 41.37 2.57
776 784 6.607198 TCCCAAGAAGAAAAACAGACTTCATT 59.393 34.615 0.00 0.00 41.37 2.57
777 785 7.777910 TCCCAAGAAGAAAAACAGACTTCATTA 59.222 33.333 0.00 0.00 41.37 1.90
778 786 8.413229 CCCAAGAAGAAAAACAGACTTCATTAA 58.587 33.333 0.00 0.00 41.37 1.40
779 787 9.455847 CCAAGAAGAAAAACAGACTTCATTAAG 57.544 33.333 0.00 0.00 41.37 1.85
780 788 9.455847 CAAGAAGAAAAACAGACTTCATTAAGG 57.544 33.333 0.00 0.00 41.37 2.69
781 789 7.652727 AGAAGAAAAACAGACTTCATTAAGGC 58.347 34.615 0.00 0.00 41.53 4.35
782 790 6.332735 AGAAAAACAGACTTCATTAAGGCC 57.667 37.500 0.00 0.00 42.27 5.19
783 791 6.071320 AGAAAAACAGACTTCATTAAGGCCT 58.929 36.000 0.00 0.00 42.27 5.19
784 792 6.551227 AGAAAAACAGACTTCATTAAGGCCTT 59.449 34.615 24.18 24.18 42.27 4.35
785 793 5.712152 AAACAGACTTCATTAAGGCCTTG 57.288 39.130 28.77 12.79 42.27 3.61
786 794 4.373156 ACAGACTTCATTAAGGCCTTGT 57.627 40.909 28.77 15.91 42.27 3.16
787 795 4.729868 ACAGACTTCATTAAGGCCTTGTT 58.270 39.130 28.77 12.22 42.27 2.83
788 796 4.762251 ACAGACTTCATTAAGGCCTTGTTC 59.238 41.667 28.77 12.38 42.27 3.18
789 797 4.003648 AGACTTCATTAAGGCCTTGTTCG 58.996 43.478 28.77 13.36 42.27 3.95
790 798 3.081804 ACTTCATTAAGGCCTTGTTCGG 58.918 45.455 28.77 14.96 37.01 4.30
791 799 2.871096 TCATTAAGGCCTTGTTCGGT 57.129 45.000 28.77 1.45 0.00 4.69
792 800 3.149005 TCATTAAGGCCTTGTTCGGTT 57.851 42.857 28.77 0.57 0.00 4.44
793 801 4.289238 TCATTAAGGCCTTGTTCGGTTA 57.711 40.909 28.77 1.62 0.00 2.85
794 802 4.653868 TCATTAAGGCCTTGTTCGGTTAA 58.346 39.130 28.77 11.87 0.00 2.01
795 803 5.258051 TCATTAAGGCCTTGTTCGGTTAAT 58.742 37.500 28.77 13.72 0.00 1.40
796 804 5.355910 TCATTAAGGCCTTGTTCGGTTAATC 59.644 40.000 28.77 0.00 0.00 1.75
797 805 2.124277 AGGCCTTGTTCGGTTAATCC 57.876 50.000 0.00 0.00 0.00 3.01
798 806 1.633945 AGGCCTTGTTCGGTTAATCCT 59.366 47.619 0.00 0.00 0.00 3.24
799 807 2.014857 GGCCTTGTTCGGTTAATCCTC 58.985 52.381 0.00 0.00 0.00 3.71
800 808 2.014857 GCCTTGTTCGGTTAATCCTCC 58.985 52.381 0.00 0.00 0.00 4.30
801 809 2.355818 GCCTTGTTCGGTTAATCCTCCT 60.356 50.000 0.00 0.00 0.00 3.69
802 810 3.532542 CCTTGTTCGGTTAATCCTCCTC 58.467 50.000 0.00 0.00 0.00 3.71
803 811 3.197983 CCTTGTTCGGTTAATCCTCCTCT 59.802 47.826 0.00 0.00 0.00 3.69
804 812 4.434520 CTTGTTCGGTTAATCCTCCTCTC 58.565 47.826 0.00 0.00 0.00 3.20
805 813 3.437213 TGTTCGGTTAATCCTCCTCTCA 58.563 45.455 0.00 0.00 0.00 3.27
806 814 3.835978 TGTTCGGTTAATCCTCCTCTCAA 59.164 43.478 0.00 0.00 0.00 3.02
807 815 4.081642 TGTTCGGTTAATCCTCCTCTCAAG 60.082 45.833 0.00 0.00 0.00 3.02
808 816 3.031736 TCGGTTAATCCTCCTCTCAAGG 58.968 50.000 0.00 0.00 44.89 3.61
809 817 2.103263 CGGTTAATCCTCCTCTCAAGGG 59.897 54.545 0.00 0.00 43.56 3.95
810 818 2.439880 GGTTAATCCTCCTCTCAAGGGG 59.560 54.545 0.00 0.00 43.63 4.79
824 832 4.240881 TCAAGGGGATTGAAGAGGATTG 57.759 45.455 0.00 0.00 45.00 2.67
825 833 3.053395 TCAAGGGGATTGAAGAGGATTGG 60.053 47.826 0.00 0.00 45.00 3.16
826 834 2.863884 AGGGGATTGAAGAGGATTGGA 58.136 47.619 0.00 0.00 0.00 3.53
827 835 2.782341 AGGGGATTGAAGAGGATTGGAG 59.218 50.000 0.00 0.00 0.00 3.86
828 836 2.158549 GGGGATTGAAGAGGATTGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
829 837 2.158549 GGGATTGAAGAGGATTGGAGGG 60.159 54.545 0.00 0.00 0.00 4.30
830 838 2.158549 GGATTGAAGAGGATTGGAGGGG 60.159 54.545 0.00 0.00 0.00 4.79
831 839 2.359376 TTGAAGAGGATTGGAGGGGA 57.641 50.000 0.00 0.00 0.00 4.81
832 840 2.594536 TGAAGAGGATTGGAGGGGAT 57.405 50.000 0.00 0.00 0.00 3.85
833 841 2.863884 TGAAGAGGATTGGAGGGGATT 58.136 47.619 0.00 0.00 0.00 3.01
834 842 3.201363 TGAAGAGGATTGGAGGGGATTT 58.799 45.455 0.00 0.00 0.00 2.17
835 843 3.597868 TGAAGAGGATTGGAGGGGATTTT 59.402 43.478 0.00 0.00 0.00 1.82
836 844 3.677156 AGAGGATTGGAGGGGATTTTG 57.323 47.619 0.00 0.00 0.00 2.44
837 845 2.245806 AGAGGATTGGAGGGGATTTTGG 59.754 50.000 0.00 0.00 0.00 3.28
838 846 1.123077 GGATTGGAGGGGATTTTGGC 58.877 55.000 0.00 0.00 0.00 4.52
839 847 1.343377 GGATTGGAGGGGATTTTGGCT 60.343 52.381 0.00 0.00 0.00 4.75
840 848 2.470990 GATTGGAGGGGATTTTGGCTT 58.529 47.619 0.00 0.00 0.00 4.35
841 849 1.643310 TTGGAGGGGATTTTGGCTTG 58.357 50.000 0.00 0.00 0.00 4.01
842 850 0.486879 TGGAGGGGATTTTGGCTTGT 59.513 50.000 0.00 0.00 0.00 3.16
843 851 1.713647 TGGAGGGGATTTTGGCTTGTA 59.286 47.619 0.00 0.00 0.00 2.41
844 852 2.291540 TGGAGGGGATTTTGGCTTGTAG 60.292 50.000 0.00 0.00 0.00 2.74
845 853 2.025321 GGAGGGGATTTTGGCTTGTAGA 60.025 50.000 0.00 0.00 0.00 2.59
846 854 3.282885 GAGGGGATTTTGGCTTGTAGAG 58.717 50.000 0.00 0.00 0.00 2.43
847 855 2.024941 AGGGGATTTTGGCTTGTAGAGG 60.025 50.000 0.00 0.00 0.00 3.69
848 856 2.025321 GGGGATTTTGGCTTGTAGAGGA 60.025 50.000 0.00 0.00 0.00 3.71
849 857 3.373110 GGGGATTTTGGCTTGTAGAGGAT 60.373 47.826 0.00 0.00 0.00 3.24
850 858 4.281657 GGGATTTTGGCTTGTAGAGGATT 58.718 43.478 0.00 0.00 0.00 3.01
851 859 4.711846 GGGATTTTGGCTTGTAGAGGATTT 59.288 41.667 0.00 0.00 0.00 2.17
852 860 5.891551 GGGATTTTGGCTTGTAGAGGATTTA 59.108 40.000 0.00 0.00 0.00 1.40
853 861 6.379988 GGGATTTTGGCTTGTAGAGGATTTAA 59.620 38.462 0.00 0.00 0.00 1.52
854 862 7.069950 GGGATTTTGGCTTGTAGAGGATTTAAT 59.930 37.037 0.00 0.00 0.00 1.40
855 863 8.138074 GGATTTTGGCTTGTAGAGGATTTAATC 58.862 37.037 0.00 0.00 0.00 1.75
867 875 3.779444 GGATTTAATCCCCCTCAATCCC 58.221 50.000 12.74 0.00 43.88 3.85
868 876 3.402708 GGATTTAATCCCCCTCAATCCCT 59.597 47.826 12.74 0.00 43.88 4.20
869 877 3.971468 TTTAATCCCCCTCAATCCCTG 57.029 47.619 0.00 0.00 0.00 4.45
870 878 1.149101 TAATCCCCCTCAATCCCTGC 58.851 55.000 0.00 0.00 0.00 4.85
871 879 1.659035 AATCCCCCTCAATCCCTGCC 61.659 60.000 0.00 0.00 0.00 4.85
872 880 2.881491 ATCCCCCTCAATCCCTGCCA 62.881 60.000 0.00 0.00 0.00 4.92
873 881 2.625460 CCCCCTCAATCCCTGCCAA 61.625 63.158 0.00 0.00 0.00 4.52
874 882 1.622499 CCCCTCAATCCCTGCCAAT 59.378 57.895 0.00 0.00 0.00 3.16
875 883 0.468771 CCCCTCAATCCCTGCCAATC 60.469 60.000 0.00 0.00 0.00 2.67
876 884 0.554792 CCCTCAATCCCTGCCAATCT 59.445 55.000 0.00 0.00 0.00 2.40
877 885 1.478288 CCCTCAATCCCTGCCAATCTC 60.478 57.143 0.00 0.00 0.00 2.75
878 886 1.478288 CCTCAATCCCTGCCAATCTCC 60.478 57.143 0.00 0.00 0.00 3.71
879 887 1.493871 CTCAATCCCTGCCAATCTCCT 59.506 52.381 0.00 0.00 0.00 3.69
880 888 1.925255 TCAATCCCTGCCAATCTCCTT 59.075 47.619 0.00 0.00 0.00 3.36
881 889 2.092212 TCAATCCCTGCCAATCTCCTTC 60.092 50.000 0.00 0.00 0.00 3.46
882 890 1.600058 ATCCCTGCCAATCTCCTTCA 58.400 50.000 0.00 0.00 0.00 3.02
883 891 1.371467 TCCCTGCCAATCTCCTTCAA 58.629 50.000 0.00 0.00 0.00 2.69
884 892 1.710244 TCCCTGCCAATCTCCTTCAAA 59.290 47.619 0.00 0.00 0.00 2.69
885 893 2.109834 TCCCTGCCAATCTCCTTCAAAA 59.890 45.455 0.00 0.00 0.00 2.44
886 894 3.102204 CCCTGCCAATCTCCTTCAAAAT 58.898 45.455 0.00 0.00 0.00 1.82
887 895 3.131755 CCCTGCCAATCTCCTTCAAAATC 59.868 47.826 0.00 0.00 0.00 2.17
888 896 3.131755 CCTGCCAATCTCCTTCAAAATCC 59.868 47.826 0.00 0.00 0.00 3.01
889 897 3.765511 CTGCCAATCTCCTTCAAAATCCA 59.234 43.478 0.00 0.00 0.00 3.41
890 898 3.511146 TGCCAATCTCCTTCAAAATCCAC 59.489 43.478 0.00 0.00 0.00 4.02
891 899 3.118992 GCCAATCTCCTTCAAAATCCACC 60.119 47.826 0.00 0.00 0.00 4.61
892 900 4.347607 CCAATCTCCTTCAAAATCCACCT 58.652 43.478 0.00 0.00 0.00 4.00
893 901 4.400567 CCAATCTCCTTCAAAATCCACCTC 59.599 45.833 0.00 0.00 0.00 3.85
894 902 4.934797 ATCTCCTTCAAAATCCACCTCA 57.065 40.909 0.00 0.00 0.00 3.86
895 903 4.722526 TCTCCTTCAAAATCCACCTCAA 57.277 40.909 0.00 0.00 0.00 3.02
896 904 4.398319 TCTCCTTCAAAATCCACCTCAAC 58.602 43.478 0.00 0.00 0.00 3.18
897 905 3.496331 TCCTTCAAAATCCACCTCAACC 58.504 45.455 0.00 0.00 0.00 3.77
898 906 2.228822 CCTTCAAAATCCACCTCAACCG 59.771 50.000 0.00 0.00 0.00 4.44
899 907 2.940994 TCAAAATCCACCTCAACCGA 57.059 45.000 0.00 0.00 0.00 4.69
900 908 3.216187 TCAAAATCCACCTCAACCGAA 57.784 42.857 0.00 0.00 0.00 4.30
901 909 2.882137 TCAAAATCCACCTCAACCGAAC 59.118 45.455 0.00 0.00 0.00 3.95
902 910 2.621055 CAAAATCCACCTCAACCGAACA 59.379 45.455 0.00 0.00 0.00 3.18
903 911 2.649531 AATCCACCTCAACCGAACAA 57.350 45.000 0.00 0.00 0.00 2.83
904 912 2.185004 ATCCACCTCAACCGAACAAG 57.815 50.000 0.00 0.00 0.00 3.16
905 913 0.107831 TCCACCTCAACCGAACAAGG 59.892 55.000 0.00 0.00 34.94 3.61
906 914 1.515521 CCACCTCAACCGAACAAGGC 61.516 60.000 0.00 0.00 31.79 4.35
907 915 1.228154 ACCTCAACCGAACAAGGCC 60.228 57.895 0.00 0.00 31.79 5.19
908 916 1.073199 CCTCAACCGAACAAGGCCT 59.927 57.895 0.00 0.00 33.69 5.19
909 917 0.323629 CCTCAACCGAACAAGGCCTA 59.676 55.000 5.16 0.00 33.69 3.93
910 918 1.271163 CCTCAACCGAACAAGGCCTAA 60.271 52.381 5.16 0.00 33.69 2.69
945 1078 2.228582 CCATGTGGCAAGAATGAAACGA 59.771 45.455 7.45 0.00 0.00 3.85
952 1085 3.304659 GGCAAGAATGAAACGACACACAT 60.305 43.478 0.00 0.00 0.00 3.21
968 1101 9.498176 ACGACACACATGTACACTATATATAGA 57.502 33.333 23.70 3.95 39.95 1.98
995 1128 4.332819 GCACCATGAGACCTAACAATACAC 59.667 45.833 0.00 0.00 0.00 2.90
1041 1174 4.082136 CCTCCTACTAATATCGCTCCCAAC 60.082 50.000 0.00 0.00 0.00 3.77
1073 1206 0.540365 CCACCTTGCTTGGTCCATGT 60.540 55.000 6.62 0.00 38.45 3.21
1123 1256 1.226802 CACCTCGACATGCTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
1126 1259 3.781770 CTCGACATGCTCTCCGGCC 62.782 68.421 0.00 0.00 0.00 6.13
1133 1266 3.797353 GCTCTCCGGCCAATCCCA 61.797 66.667 2.24 0.00 0.00 4.37
1134 1267 2.190578 CTCTCCGGCCAATCCCAC 59.809 66.667 2.24 0.00 0.00 4.61
1138 1271 1.694525 TCCGGCCAATCCCACCATA 60.695 57.895 2.24 0.00 0.00 2.74
1143 1276 2.242043 GGCCAATCCCACCATATGAAG 58.758 52.381 3.65 0.00 0.00 3.02
1155 1288 2.550978 CATATGAAGGTTCTCGCCGTT 58.449 47.619 0.00 0.00 0.00 4.44
1158 1291 2.048503 AAGGTTCTCGCCGTTCCG 60.049 61.111 0.00 0.00 0.00 4.30
1258 1391 7.403312 TTTCACATCCATTGGTATTTGGTAG 57.597 36.000 1.86 0.00 34.48 3.18
1259 1392 6.320434 TCACATCCATTGGTATTTGGTAGA 57.680 37.500 1.86 0.00 34.48 2.59
1260 1393 6.726379 TCACATCCATTGGTATTTGGTAGAA 58.274 36.000 1.86 0.00 34.48 2.10
1262 1395 6.376864 CACATCCATTGGTATTTGGTAGAACA 59.623 38.462 1.86 0.00 34.48 3.18
1263 1396 6.951198 ACATCCATTGGTATTTGGTAGAACAA 59.049 34.615 1.86 0.00 34.48 2.83
1351 1563 2.202932 CGAAGTGGAGATGGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
1382 1594 3.119919 ACGAACTTGACGAGTATGGAGTC 60.120 47.826 0.00 0.00 37.72 3.36
1425 1637 1.199097 CTTACATCCACAACGGTTGGC 59.801 52.381 23.51 0.00 38.61 4.52
1522 1734 1.433064 GTCTGCAGCTCGAGAGGAG 59.567 63.158 18.75 17.63 46.06 3.69
1556 1768 1.821332 GGCTTCAGAATGGCCTCCG 60.821 63.158 3.32 0.00 39.88 4.63
1607 1819 2.564947 CTGGAGCTGAACCTCAAGTACT 59.435 50.000 0.00 0.00 33.47 2.73
1636 1848 5.237996 GCCTCTACGAGTATGTACACACATA 59.762 44.000 7.10 0.00 43.74 2.29
1648 1860 6.465439 TGTACACACATACTCCCTCTATTG 57.535 41.667 0.00 0.00 0.00 1.90
1689 1902 7.872138 TCAAGATTTATCCCAGGTCAACTTAT 58.128 34.615 0.00 0.00 0.00 1.73
1962 2177 9.587772 CCGAACTCTCAAATAGAAGAGATTTAA 57.412 33.333 6.40 0.00 39.91 1.52
1978 2193 7.427214 AGAGATTTAATAACCACGCTCTCTAC 58.573 38.462 0.00 0.00 37.15 2.59
1981 2196 1.100510 ATAACCACGCTCTCTACGCA 58.899 50.000 0.00 0.00 0.00 5.24
2038 2253 3.056107 TCGTCAAGGTTAGGATTGTCCAG 60.056 47.826 0.00 0.00 39.61 3.86
2049 2264 2.421529 GGATTGTCCAGATAAAGGGCGT 60.422 50.000 0.00 0.00 36.28 5.68
2098 2313 0.317160 CGCTGCCGGATCATAAGGTA 59.683 55.000 5.05 0.00 0.00 3.08
2099 2314 1.797025 GCTGCCGGATCATAAGGTAC 58.203 55.000 5.05 0.00 0.00 3.34
2100 2315 1.070134 GCTGCCGGATCATAAGGTACA 59.930 52.381 5.05 0.00 0.00 2.90
2101 2316 2.289694 GCTGCCGGATCATAAGGTACAT 60.290 50.000 5.05 0.00 0.00 2.29
2102 2317 3.329386 CTGCCGGATCATAAGGTACATG 58.671 50.000 5.05 0.00 0.00 3.21
2103 2318 2.076863 GCCGGATCATAAGGTACATGC 58.923 52.381 5.05 0.00 0.00 4.06
2104 2319 2.549992 GCCGGATCATAAGGTACATGCA 60.550 50.000 5.05 0.00 0.00 3.96
2105 2320 3.067106 CCGGATCATAAGGTACATGCAC 58.933 50.000 0.00 0.00 0.00 4.57
2156 2371 4.227538 CGCCGTGTCCTTTATACTGATAG 58.772 47.826 0.00 0.00 0.00 2.08
2182 2397 7.189693 TCTCAAACACACACTATTGATCAAC 57.810 36.000 11.07 0.00 31.92 3.18
2186 2401 3.073798 ACACACACTATTGATCAACCCCA 59.926 43.478 11.07 0.00 0.00 4.96
2187 2402 3.440173 CACACACTATTGATCAACCCCAC 59.560 47.826 11.07 0.00 0.00 4.61
2190 2405 2.677836 CACTATTGATCAACCCCACACG 59.322 50.000 11.07 0.00 0.00 4.49
2304 2521 5.163509 CGTCTTCCCAGAGATGTCATCTAAA 60.164 44.000 15.44 5.01 40.38 1.85
2332 2549 6.687393 GCATCAGTTCTTCTCATCCAAGGATA 60.687 42.308 0.40 0.00 32.93 2.59
2351 2568 8.363390 CAAGGATAGTTAGCATGAAGATCAGTA 58.637 37.037 0.00 0.00 0.00 2.74
2428 2647 0.322546 GTTCGCCCCTCTGGATGTTT 60.323 55.000 0.00 0.00 35.39 2.83
2488 2707 9.245481 CTTGTAATTTACCAAAGTATTACCCCA 57.755 33.333 4.17 0.00 28.88 4.96
2529 2749 8.465273 AGTATTTATTTGAAATAGGGTGCCTC 57.535 34.615 0.00 0.00 34.61 4.70
2632 2852 2.948979 CCTACACTCCAAAGCAAACACA 59.051 45.455 0.00 0.00 0.00 3.72
2635 2855 2.184448 CACTCCAAAGCAAACACAACG 58.816 47.619 0.00 0.00 0.00 4.10
2641 2861 3.305110 CAAAGCAAACACAACGTATCCC 58.695 45.455 0.00 0.00 0.00 3.85
2671 3297 6.434028 TCTCCCATATCTTTCAAACCAAACAG 59.566 38.462 0.00 0.00 0.00 3.16
2684 3310 6.659242 TCAAACCAAACAGAAGATATTCTCCC 59.341 38.462 0.00 0.00 0.00 4.30
2705 3571 8.253113 TCTCCCTTATTTTTGAGCATTTTCATC 58.747 33.333 0.00 0.00 0.00 2.92
2731 3597 7.308770 CCAAATGTCATATCGAGCCAATACAAT 60.309 37.037 0.00 0.00 0.00 2.71
2757 3624 1.303888 AGCGAACACCCGACCTCTA 60.304 57.895 0.00 0.00 0.00 2.43
2800 3668 6.088824 CCAACAAGTCTGATAATGCTTGAAC 58.911 40.000 10.73 0.00 40.30 3.18
2812 3680 2.030371 TGCTTGAACAATGGAGCAACA 58.970 42.857 0.00 0.00 41.72 3.33
2813 3681 2.223782 TGCTTGAACAATGGAGCAACAC 60.224 45.455 0.00 0.00 41.72 3.32
2815 3683 1.674359 TGAACAATGGAGCAACACGT 58.326 45.000 0.00 0.00 0.00 4.49
2828 3699 3.002656 AGCAACACGTTTCAAGATCACTG 59.997 43.478 0.00 0.00 0.00 3.66
2832 3703 5.156804 ACACGTTTCAAGATCACTGAAAC 57.843 39.130 27.47 27.47 44.46 2.78
2840 3711 4.042062 TCAAGATCACTGAAACCATCACCT 59.958 41.667 0.00 0.00 33.47 4.00
2841 3712 4.213564 AGATCACTGAAACCATCACCTC 57.786 45.455 0.00 0.00 33.47 3.85
2857 3728 1.141881 CTCATCCGTCCCTTGGTCG 59.858 63.158 0.00 0.00 34.33 4.79
2952 3823 5.636965 CCATGTTTTTATGTCGATTTTGCCA 59.363 36.000 0.00 0.00 0.00 4.92
2962 3833 9.868277 TTATGTCGATTTTGCCAAGATAAAAAT 57.132 25.926 0.00 0.00 36.47 1.82
3017 3888 9.181805 GAGCTTGAAACAACTATTTTAGAAACC 57.818 33.333 0.00 0.00 0.00 3.27
3065 3936 5.219633 ACAACCATTGCAATCGTTTTAGTC 58.780 37.500 18.26 0.00 0.00 2.59
3072 3943 3.312973 TGCAATCGTTTTAGTCGGTTGTT 59.687 39.130 11.75 0.00 46.68 2.83
3115 3987 6.872920 AGCATTAAGTTTTCACAACTGGAAA 58.127 32.000 0.00 0.00 32.74 3.13
3250 4128 1.758280 ACCAGTACCGCCGATCAATAA 59.242 47.619 0.00 0.00 0.00 1.40
3331 4211 5.420739 GCCCCATTTCTATTACCAAACAAGA 59.579 40.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.391296 GGGATAAGAGGGAGCATGTTACA 59.609 47.826 0.00 0.00 0.00 2.41
1 2 3.391296 TGGGATAAGAGGGAGCATGTTAC 59.609 47.826 0.00 0.00 0.00 2.50
3 4 2.492025 TGGGATAAGAGGGAGCATGTT 58.508 47.619 0.00 0.00 0.00 2.71
4 5 2.196742 TGGGATAAGAGGGAGCATGT 57.803 50.000 0.00 0.00 0.00 3.21
5 6 2.911636 AGATGGGATAAGAGGGAGCATG 59.088 50.000 0.00 0.00 0.00 4.06
6 7 3.288454 AGATGGGATAAGAGGGAGCAT 57.712 47.619 0.00 0.00 0.00 3.79
7 8 2.803285 AGATGGGATAAGAGGGAGCA 57.197 50.000 0.00 0.00 0.00 4.26
8 9 4.141390 TGAAAAGATGGGATAAGAGGGAGC 60.141 45.833 0.00 0.00 0.00 4.70
9 10 5.372373 GTGAAAAGATGGGATAAGAGGGAG 58.628 45.833 0.00 0.00 0.00 4.30
10 11 4.166144 GGTGAAAAGATGGGATAAGAGGGA 59.834 45.833 0.00 0.00 0.00 4.20
11 12 4.166919 AGGTGAAAAGATGGGATAAGAGGG 59.833 45.833 0.00 0.00 0.00 4.30
12 13 5.379706 AGGTGAAAAGATGGGATAAGAGG 57.620 43.478 0.00 0.00 0.00 3.69
13 14 7.796054 TCTTAGGTGAAAAGATGGGATAAGAG 58.204 38.462 0.00 0.00 0.00 2.85
14 15 7.147479 CCTCTTAGGTGAAAAGATGGGATAAGA 60.147 40.741 0.00 0.00 32.72 2.10
15 16 6.995091 CCTCTTAGGTGAAAAGATGGGATAAG 59.005 42.308 0.00 0.00 32.72 1.73
16 17 6.900194 CCTCTTAGGTGAAAAGATGGGATAA 58.100 40.000 0.00 0.00 32.72 1.75
17 18 6.500589 CCTCTTAGGTGAAAAGATGGGATA 57.499 41.667 0.00 0.00 32.72 2.59
18 19 5.379706 CCTCTTAGGTGAAAAGATGGGAT 57.620 43.478 0.00 0.00 32.72 3.85
19 20 4.844349 CCTCTTAGGTGAAAAGATGGGA 57.156 45.455 0.00 0.00 32.72 4.37
32 33 7.721409 AACTCTTACCTTCTTACCTCTTAGG 57.279 40.000 0.00 0.00 42.49 2.69
35 36 9.322769 TGATTAACTCTTACCTTCTTACCTCTT 57.677 33.333 0.00 0.00 0.00 2.85
36 37 8.896722 TGATTAACTCTTACCTTCTTACCTCT 57.103 34.615 0.00 0.00 0.00 3.69
37 38 8.968969 TCTGATTAACTCTTACCTTCTTACCTC 58.031 37.037 0.00 0.00 0.00 3.85
38 39 8.751242 GTCTGATTAACTCTTACCTTCTTACCT 58.249 37.037 0.00 0.00 0.00 3.08
39 40 7.980662 GGTCTGATTAACTCTTACCTTCTTACC 59.019 40.741 0.00 0.00 0.00 2.85
40 41 8.529476 TGGTCTGATTAACTCTTACCTTCTTAC 58.471 37.037 0.00 0.00 33.18 2.34
41 42 8.529476 GTGGTCTGATTAACTCTTACCTTCTTA 58.471 37.037 0.00 0.00 33.18 2.10
42 43 7.235812 AGTGGTCTGATTAACTCTTACCTTCTT 59.764 37.037 0.00 0.00 33.18 2.52
43 44 6.726764 AGTGGTCTGATTAACTCTTACCTTCT 59.273 38.462 0.00 0.00 33.18 2.85
44 45 6.937392 AGTGGTCTGATTAACTCTTACCTTC 58.063 40.000 0.00 0.00 33.18 3.46
45 46 6.936968 AGTGGTCTGATTAACTCTTACCTT 57.063 37.500 0.00 0.00 33.18 3.50
46 47 7.183460 ACTAGTGGTCTGATTAACTCTTACCT 58.817 38.462 0.00 0.00 33.18 3.08
47 48 7.407393 ACTAGTGGTCTGATTAACTCTTACC 57.593 40.000 0.00 0.00 32.82 2.85
62 63 7.067494 AGCCATTGATTTGATTAACTAGTGGTC 59.933 37.037 0.00 0.00 0.00 4.02
83 84 4.341235 CCATTTTGACATGATCTGAGCCAT 59.659 41.667 0.00 0.00 0.00 4.40
99 100 3.891049 CTCCCTCTTACCTCCCATTTTG 58.109 50.000 0.00 0.00 0.00 2.44
182 183 9.607285 CGTTATGGGTGCATAAATCTAATTAAC 57.393 33.333 0.00 0.00 0.00 2.01
185 186 6.490040 AGCGTTATGGGTGCATAAATCTAATT 59.510 34.615 0.00 0.00 0.00 1.40
502 508 6.321435 TCATTGAGTTCACCTCGAGTATATGT 59.679 38.462 12.31 0.00 43.64 2.29
553 560 7.845617 TTCGATGCAAACAACAAATAAGTAC 57.154 32.000 0.00 0.00 0.00 2.73
563 570 9.198065 GCATATAAATTTTTCGATGCAAACAAC 57.802 29.630 15.63 0.00 37.86 3.32
676 684 8.107095 ACTAATCAGGGCTAGTCACATTTAAAA 58.893 33.333 0.00 0.00 0.00 1.52
680 688 5.431765 CACTAATCAGGGCTAGTCACATTT 58.568 41.667 0.00 0.00 0.00 2.32
681 689 4.141620 CCACTAATCAGGGCTAGTCACATT 60.142 45.833 0.00 0.00 0.00 2.71
682 690 3.389329 CCACTAATCAGGGCTAGTCACAT 59.611 47.826 0.00 0.00 0.00 3.21
683 691 2.766263 CCACTAATCAGGGCTAGTCACA 59.234 50.000 0.00 0.00 0.00 3.58
684 692 3.031736 TCCACTAATCAGGGCTAGTCAC 58.968 50.000 0.00 0.00 0.00 3.67
685 693 3.398318 TCCACTAATCAGGGCTAGTCA 57.602 47.619 0.00 0.00 0.00 3.41
686 694 3.961408 TCTTCCACTAATCAGGGCTAGTC 59.039 47.826 0.00 0.00 0.00 2.59
687 695 3.995636 TCTTCCACTAATCAGGGCTAGT 58.004 45.455 0.00 0.00 0.00 2.57
688 696 4.590647 TCATCTTCCACTAATCAGGGCTAG 59.409 45.833 0.00 0.00 0.00 3.42
689 697 4.556697 TCATCTTCCACTAATCAGGGCTA 58.443 43.478 0.00 0.00 0.00 3.93
690 698 3.387962 TCATCTTCCACTAATCAGGGCT 58.612 45.455 0.00 0.00 0.00 5.19
691 699 3.845781 TCATCTTCCACTAATCAGGGC 57.154 47.619 0.00 0.00 0.00 5.19
692 700 4.884164 GGTTTCATCTTCCACTAATCAGGG 59.116 45.833 0.00 0.00 0.00 4.45
693 701 5.500234 TGGTTTCATCTTCCACTAATCAGG 58.500 41.667 0.00 0.00 0.00 3.86
694 702 7.391554 TCTTTGGTTTCATCTTCCACTAATCAG 59.608 37.037 0.00 0.00 0.00 2.90
695 703 7.230747 TCTTTGGTTTCATCTTCCACTAATCA 58.769 34.615 0.00 0.00 0.00 2.57
696 704 7.687941 TCTTTGGTTTCATCTTCCACTAATC 57.312 36.000 0.00 0.00 0.00 1.75
697 705 7.944554 TCTTCTTTGGTTTCATCTTCCACTAAT 59.055 33.333 0.00 0.00 0.00 1.73
698 706 7.287061 TCTTCTTTGGTTTCATCTTCCACTAA 58.713 34.615 0.00 0.00 0.00 2.24
699 707 6.837312 TCTTCTTTGGTTTCATCTTCCACTA 58.163 36.000 0.00 0.00 0.00 2.74
700 708 5.694995 TCTTCTTTGGTTTCATCTTCCACT 58.305 37.500 0.00 0.00 0.00 4.00
701 709 6.581171 ATCTTCTTTGGTTTCATCTTCCAC 57.419 37.500 0.00 0.00 0.00 4.02
702 710 7.723616 TGTTATCTTCTTTGGTTTCATCTTCCA 59.276 33.333 0.00 0.00 0.00 3.53
703 711 8.110860 TGTTATCTTCTTTGGTTTCATCTTCC 57.889 34.615 0.00 0.00 0.00 3.46
706 714 9.965902 AGTATGTTATCTTCTTTGGTTTCATCT 57.034 29.630 0.00 0.00 0.00 2.90
709 717 9.567776 TGAAGTATGTTATCTTCTTTGGTTTCA 57.432 29.630 0.00 0.00 40.20 2.69
717 725 9.628500 GGGGTTAATGAAGTATGTTATCTTCTT 57.372 33.333 0.00 0.00 40.20 2.52
718 726 8.218488 GGGGGTTAATGAAGTATGTTATCTTCT 58.782 37.037 0.00 0.00 40.20 2.85
719 727 8.392372 GGGGGTTAATGAAGTATGTTATCTTC 57.608 38.462 0.00 0.00 40.02 2.87
746 754 2.248248 GTTTTTCTTCTTGGGAGGGGG 58.752 52.381 0.00 0.00 0.00 5.40
747 755 2.893489 CTGTTTTTCTTCTTGGGAGGGG 59.107 50.000 0.00 0.00 0.00 4.79
748 756 3.570125 GTCTGTTTTTCTTCTTGGGAGGG 59.430 47.826 0.00 0.00 0.00 4.30
749 757 4.464947 AGTCTGTTTTTCTTCTTGGGAGG 58.535 43.478 0.00 0.00 0.00 4.30
750 758 5.590259 TGAAGTCTGTTTTTCTTCTTGGGAG 59.410 40.000 0.00 0.00 38.52 4.30
751 759 5.505780 TGAAGTCTGTTTTTCTTCTTGGGA 58.494 37.500 0.00 0.00 38.52 4.37
752 760 5.835113 TGAAGTCTGTTTTTCTTCTTGGG 57.165 39.130 0.00 0.00 38.52 4.12
753 761 9.455847 CTTAATGAAGTCTGTTTTTCTTCTTGG 57.544 33.333 0.00 0.00 38.52 3.61
754 762 9.455847 CCTTAATGAAGTCTGTTTTTCTTCTTG 57.544 33.333 0.00 0.00 38.52 3.02
755 763 8.138074 GCCTTAATGAAGTCTGTTTTTCTTCTT 58.862 33.333 0.00 0.00 38.52 2.52
756 764 7.255625 GGCCTTAATGAAGTCTGTTTTTCTTCT 60.256 37.037 0.00 0.00 38.52 2.85
757 765 6.863645 GGCCTTAATGAAGTCTGTTTTTCTTC 59.136 38.462 0.00 0.00 38.30 2.87
758 766 6.551227 AGGCCTTAATGAAGTCTGTTTTTCTT 59.449 34.615 0.00 0.00 0.00 2.52
759 767 6.071320 AGGCCTTAATGAAGTCTGTTTTTCT 58.929 36.000 0.00 0.00 0.00 2.52
760 768 6.332735 AGGCCTTAATGAAGTCTGTTTTTC 57.667 37.500 0.00 0.00 0.00 2.29
761 769 6.098266 ACAAGGCCTTAATGAAGTCTGTTTTT 59.902 34.615 20.00 0.00 0.00 1.94
762 770 5.598417 ACAAGGCCTTAATGAAGTCTGTTTT 59.402 36.000 20.00 0.00 0.00 2.43
763 771 5.140454 ACAAGGCCTTAATGAAGTCTGTTT 58.860 37.500 20.00 0.00 0.00 2.83
764 772 4.729868 ACAAGGCCTTAATGAAGTCTGTT 58.270 39.130 20.00 0.00 0.00 3.16
765 773 4.373156 ACAAGGCCTTAATGAAGTCTGT 57.627 40.909 20.00 5.52 0.00 3.41
766 774 4.142816 CGAACAAGGCCTTAATGAAGTCTG 60.143 45.833 20.00 4.77 0.00 3.51
767 775 4.003648 CGAACAAGGCCTTAATGAAGTCT 58.996 43.478 20.00 2.09 0.00 3.24
768 776 3.127030 CCGAACAAGGCCTTAATGAAGTC 59.873 47.826 20.00 6.87 0.00 3.01
769 777 3.081804 CCGAACAAGGCCTTAATGAAGT 58.918 45.455 20.00 7.99 0.00 3.01
770 778 3.081804 ACCGAACAAGGCCTTAATGAAG 58.918 45.455 20.00 7.24 33.69 3.02
771 779 3.149005 ACCGAACAAGGCCTTAATGAA 57.851 42.857 20.00 0.00 33.69 2.57
772 780 2.871096 ACCGAACAAGGCCTTAATGA 57.129 45.000 20.00 0.00 33.69 2.57
773 781 5.449999 GGATTAACCGAACAAGGCCTTAATG 60.450 44.000 20.00 9.88 28.62 1.90
774 782 4.643334 GGATTAACCGAACAAGGCCTTAAT 59.357 41.667 20.00 11.66 30.11 1.40
775 783 4.011698 GGATTAACCGAACAAGGCCTTAA 58.988 43.478 20.00 6.60 33.69 1.85
776 784 3.264964 AGGATTAACCGAACAAGGCCTTA 59.735 43.478 20.00 0.00 44.74 2.69
777 785 2.041216 AGGATTAACCGAACAAGGCCTT 59.959 45.455 13.78 13.78 44.74 4.35
778 786 1.633945 AGGATTAACCGAACAAGGCCT 59.366 47.619 0.00 0.00 44.74 5.19
779 787 2.014857 GAGGATTAACCGAACAAGGCC 58.985 52.381 0.00 0.00 44.74 5.19
780 788 2.014857 GGAGGATTAACCGAACAAGGC 58.985 52.381 0.00 0.00 44.74 4.35
781 789 3.197983 AGAGGAGGATTAACCGAACAAGG 59.802 47.826 0.00 0.00 44.74 3.61
782 790 4.081642 TGAGAGGAGGATTAACCGAACAAG 60.082 45.833 0.00 0.00 44.74 3.16
783 791 3.835978 TGAGAGGAGGATTAACCGAACAA 59.164 43.478 0.00 0.00 44.74 2.83
784 792 3.437213 TGAGAGGAGGATTAACCGAACA 58.563 45.455 0.00 0.00 44.74 3.18
785 793 4.434520 CTTGAGAGGAGGATTAACCGAAC 58.565 47.826 0.00 0.00 44.74 3.95
786 794 3.451178 CCTTGAGAGGAGGATTAACCGAA 59.549 47.826 0.00 0.00 46.74 4.30
787 795 3.031736 CCTTGAGAGGAGGATTAACCGA 58.968 50.000 0.00 0.00 46.74 4.69
788 796 2.103263 CCCTTGAGAGGAGGATTAACCG 59.897 54.545 0.00 0.00 46.74 4.44
789 797 2.439880 CCCCTTGAGAGGAGGATTAACC 59.560 54.545 0.00 0.00 46.74 2.85
790 798 3.385115 TCCCCTTGAGAGGAGGATTAAC 58.615 50.000 0.00 0.00 46.74 2.01
791 799 3.795755 TCCCCTTGAGAGGAGGATTAA 57.204 47.619 0.00 0.00 46.74 1.40
793 801 2.906169 ATCCCCTTGAGAGGAGGATT 57.094 50.000 8.69 0.00 44.29 3.01
794 802 2.021639 TCAATCCCCTTGAGAGGAGGAT 60.022 50.000 8.69 8.69 46.54 3.24
795 803 1.366082 TCAATCCCCTTGAGAGGAGGA 59.634 52.381 5.51 5.51 46.74 3.71
796 804 1.885049 TCAATCCCCTTGAGAGGAGG 58.115 55.000 0.00 0.00 46.74 4.30
797 805 3.110705 TCTTCAATCCCCTTGAGAGGAG 58.889 50.000 0.00 0.00 46.74 3.69
798 806 3.110705 CTCTTCAATCCCCTTGAGAGGA 58.889 50.000 0.00 0.00 46.74 3.71
799 807 2.172293 CCTCTTCAATCCCCTTGAGAGG 59.828 54.545 13.81 13.81 44.48 3.69
800 808 3.110705 TCCTCTTCAATCCCCTTGAGAG 58.889 50.000 0.00 0.00 44.48 3.20
801 809 3.205519 TCCTCTTCAATCCCCTTGAGA 57.794 47.619 0.00 0.00 44.48 3.27
802 810 4.205587 CAATCCTCTTCAATCCCCTTGAG 58.794 47.826 0.00 0.00 44.48 3.02
803 811 3.053395 CCAATCCTCTTCAATCCCCTTGA 60.053 47.826 0.00 0.00 42.15 3.02
804 812 3.053395 TCCAATCCTCTTCAATCCCCTTG 60.053 47.826 0.00 0.00 36.09 3.61
805 813 3.201363 TCCAATCCTCTTCAATCCCCTT 58.799 45.455 0.00 0.00 0.00 3.95
806 814 2.782341 CTCCAATCCTCTTCAATCCCCT 59.218 50.000 0.00 0.00 0.00 4.79
807 815 2.158549 CCTCCAATCCTCTTCAATCCCC 60.159 54.545 0.00 0.00 0.00 4.81
808 816 2.158549 CCCTCCAATCCTCTTCAATCCC 60.159 54.545 0.00 0.00 0.00 3.85
809 817 2.158549 CCCCTCCAATCCTCTTCAATCC 60.159 54.545 0.00 0.00 0.00 3.01
810 818 2.780010 TCCCCTCCAATCCTCTTCAATC 59.220 50.000 0.00 0.00 0.00 2.67
811 819 2.863884 TCCCCTCCAATCCTCTTCAAT 58.136 47.619 0.00 0.00 0.00 2.57
812 820 2.359376 TCCCCTCCAATCCTCTTCAA 57.641 50.000 0.00 0.00 0.00 2.69
813 821 2.594536 ATCCCCTCCAATCCTCTTCA 57.405 50.000 0.00 0.00 0.00 3.02
814 822 3.956848 CAAAATCCCCTCCAATCCTCTTC 59.043 47.826 0.00 0.00 0.00 2.87
815 823 3.310141 CCAAAATCCCCTCCAATCCTCTT 60.310 47.826 0.00 0.00 0.00 2.85
816 824 2.245806 CCAAAATCCCCTCCAATCCTCT 59.754 50.000 0.00 0.00 0.00 3.69
817 825 2.670939 CCAAAATCCCCTCCAATCCTC 58.329 52.381 0.00 0.00 0.00 3.71
818 826 1.343377 GCCAAAATCCCCTCCAATCCT 60.343 52.381 0.00 0.00 0.00 3.24
819 827 1.123077 GCCAAAATCCCCTCCAATCC 58.877 55.000 0.00 0.00 0.00 3.01
820 828 2.165357 AGCCAAAATCCCCTCCAATC 57.835 50.000 0.00 0.00 0.00 2.67
821 829 2.190538 CAAGCCAAAATCCCCTCCAAT 58.809 47.619 0.00 0.00 0.00 3.16
822 830 1.132881 ACAAGCCAAAATCCCCTCCAA 60.133 47.619 0.00 0.00 0.00 3.53
823 831 0.486879 ACAAGCCAAAATCCCCTCCA 59.513 50.000 0.00 0.00 0.00 3.86
824 832 2.025321 TCTACAAGCCAAAATCCCCTCC 60.025 50.000 0.00 0.00 0.00 4.30
825 833 3.282885 CTCTACAAGCCAAAATCCCCTC 58.717 50.000 0.00 0.00 0.00 4.30
826 834 2.024941 CCTCTACAAGCCAAAATCCCCT 60.025 50.000 0.00 0.00 0.00 4.79
827 835 2.025321 TCCTCTACAAGCCAAAATCCCC 60.025 50.000 0.00 0.00 0.00 4.81
828 836 3.366052 TCCTCTACAAGCCAAAATCCC 57.634 47.619 0.00 0.00 0.00 3.85
829 837 5.921962 AAATCCTCTACAAGCCAAAATCC 57.078 39.130 0.00 0.00 0.00 3.01
830 838 8.138074 GGATTAAATCCTCTACAAGCCAAAATC 58.862 37.037 0.00 0.00 46.19 2.17
831 839 8.011844 GGATTAAATCCTCTACAAGCCAAAAT 57.988 34.615 0.00 0.00 46.19 1.82
832 840 7.404671 GGATTAAATCCTCTACAAGCCAAAA 57.595 36.000 0.00 0.00 46.19 2.44
833 841 7.088236 GGGGATTAAATCCTCTACAAGCCAAA 61.088 42.308 0.00 0.00 46.85 3.28
834 842 5.633854 GGGGATTAAATCCTCTACAAGCCAA 60.634 44.000 0.00 0.00 46.85 4.52
835 843 4.141251 GGGGATTAAATCCTCTACAAGCCA 60.141 45.833 0.00 0.00 46.85 4.75
836 844 4.399219 GGGGATTAAATCCTCTACAAGCC 58.601 47.826 0.00 0.00 46.85 4.35
847 855 4.411013 CAGGGATTGAGGGGGATTAAATC 58.589 47.826 0.00 0.00 0.00 2.17
848 856 3.438520 GCAGGGATTGAGGGGGATTAAAT 60.439 47.826 0.00 0.00 0.00 1.40
849 857 2.091333 GCAGGGATTGAGGGGGATTAAA 60.091 50.000 0.00 0.00 0.00 1.52
850 858 1.499007 GCAGGGATTGAGGGGGATTAA 59.501 52.381 0.00 0.00 0.00 1.40
851 859 1.149101 GCAGGGATTGAGGGGGATTA 58.851 55.000 0.00 0.00 0.00 1.75
852 860 1.659035 GGCAGGGATTGAGGGGGATT 61.659 60.000 0.00 0.00 0.00 3.01
853 861 2.087461 GGCAGGGATTGAGGGGGAT 61.087 63.158 0.00 0.00 0.00 3.85
854 862 2.696125 GGCAGGGATTGAGGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
855 863 1.953100 ATTGGCAGGGATTGAGGGGG 61.953 60.000 0.00 0.00 0.00 5.40
856 864 0.468771 GATTGGCAGGGATTGAGGGG 60.469 60.000 0.00 0.00 0.00 4.79
857 865 0.554792 AGATTGGCAGGGATTGAGGG 59.445 55.000 0.00 0.00 0.00 4.30
858 866 1.478288 GGAGATTGGCAGGGATTGAGG 60.478 57.143 0.00 0.00 0.00 3.86
859 867 1.493871 AGGAGATTGGCAGGGATTGAG 59.506 52.381 0.00 0.00 0.00 3.02
860 868 1.600058 AGGAGATTGGCAGGGATTGA 58.400 50.000 0.00 0.00 0.00 2.57
861 869 2.305009 GAAGGAGATTGGCAGGGATTG 58.695 52.381 0.00 0.00 0.00 2.67
862 870 1.925255 TGAAGGAGATTGGCAGGGATT 59.075 47.619 0.00 0.00 0.00 3.01
863 871 1.600058 TGAAGGAGATTGGCAGGGAT 58.400 50.000 0.00 0.00 0.00 3.85
864 872 1.371467 TTGAAGGAGATTGGCAGGGA 58.629 50.000 0.00 0.00 0.00 4.20
865 873 2.220653 TTTGAAGGAGATTGGCAGGG 57.779 50.000 0.00 0.00 0.00 4.45
866 874 3.131755 GGATTTTGAAGGAGATTGGCAGG 59.868 47.826 0.00 0.00 0.00 4.85
867 875 3.765511 TGGATTTTGAAGGAGATTGGCAG 59.234 43.478 0.00 0.00 0.00 4.85
868 876 3.511146 GTGGATTTTGAAGGAGATTGGCA 59.489 43.478 0.00 0.00 0.00 4.92
869 877 3.118992 GGTGGATTTTGAAGGAGATTGGC 60.119 47.826 0.00 0.00 0.00 4.52
870 878 4.347607 AGGTGGATTTTGAAGGAGATTGG 58.652 43.478 0.00 0.00 0.00 3.16
871 879 5.012239 TGAGGTGGATTTTGAAGGAGATTG 58.988 41.667 0.00 0.00 0.00 2.67
872 880 5.261040 TGAGGTGGATTTTGAAGGAGATT 57.739 39.130 0.00 0.00 0.00 2.40
873 881 4.934797 TGAGGTGGATTTTGAAGGAGAT 57.065 40.909 0.00 0.00 0.00 2.75
874 882 4.398319 GTTGAGGTGGATTTTGAAGGAGA 58.602 43.478 0.00 0.00 0.00 3.71
875 883 3.507622 GGTTGAGGTGGATTTTGAAGGAG 59.492 47.826 0.00 0.00 0.00 3.69
876 884 3.496331 GGTTGAGGTGGATTTTGAAGGA 58.504 45.455 0.00 0.00 0.00 3.36
877 885 2.228822 CGGTTGAGGTGGATTTTGAAGG 59.771 50.000 0.00 0.00 0.00 3.46
878 886 3.146066 TCGGTTGAGGTGGATTTTGAAG 58.854 45.455 0.00 0.00 0.00 3.02
879 887 3.216187 TCGGTTGAGGTGGATTTTGAA 57.784 42.857 0.00 0.00 0.00 2.69
880 888 2.882137 GTTCGGTTGAGGTGGATTTTGA 59.118 45.455 0.00 0.00 0.00 2.69
881 889 2.621055 TGTTCGGTTGAGGTGGATTTTG 59.379 45.455 0.00 0.00 0.00 2.44
882 890 2.938838 TGTTCGGTTGAGGTGGATTTT 58.061 42.857 0.00 0.00 0.00 1.82
883 891 2.649531 TGTTCGGTTGAGGTGGATTT 57.350 45.000 0.00 0.00 0.00 2.17
884 892 2.504367 CTTGTTCGGTTGAGGTGGATT 58.496 47.619 0.00 0.00 0.00 3.01
885 893 1.271379 CCTTGTTCGGTTGAGGTGGAT 60.271 52.381 0.00 0.00 0.00 3.41
886 894 0.107831 CCTTGTTCGGTTGAGGTGGA 59.892 55.000 0.00 0.00 0.00 4.02
887 895 1.515521 GCCTTGTTCGGTTGAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
888 896 1.515521 GGCCTTGTTCGGTTGAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
889 897 1.228154 GGCCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
890 898 0.323629 TAGGCCTTGTTCGGTTGAGG 59.676 55.000 12.58 0.00 0.00 3.86
891 899 2.076863 CTTAGGCCTTGTTCGGTTGAG 58.923 52.381 12.58 0.00 0.00 3.02
892 900 1.880646 GCTTAGGCCTTGTTCGGTTGA 60.881 52.381 12.58 0.00 0.00 3.18
893 901 0.521735 GCTTAGGCCTTGTTCGGTTG 59.478 55.000 12.58 0.00 0.00 3.77
894 902 0.953960 CGCTTAGGCCTTGTTCGGTT 60.954 55.000 12.58 0.00 34.44 4.44
895 903 1.375523 CGCTTAGGCCTTGTTCGGT 60.376 57.895 12.58 0.00 34.44 4.69
896 904 2.106683 CCGCTTAGGCCTTGTTCGG 61.107 63.158 12.58 15.60 34.44 4.30
897 905 2.106683 CCCGCTTAGGCCTTGTTCG 61.107 63.158 12.58 10.03 39.21 3.95
898 906 3.905249 CCCGCTTAGGCCTTGTTC 58.095 61.111 12.58 0.00 39.21 3.18
906 914 0.815615 GGAACAGATGCCCGCTTAGG 60.816 60.000 0.00 0.00 40.63 2.69
907 915 0.107703 TGGAACAGATGCCCGCTTAG 60.108 55.000 0.00 0.00 0.00 2.18
908 916 1.987213 TGGAACAGATGCCCGCTTA 59.013 52.632 0.00 0.00 0.00 3.09
909 917 2.756400 TGGAACAGATGCCCGCTT 59.244 55.556 0.00 0.00 0.00 4.68
952 1085 7.186268 TGGTGCCCATCTATATATAGTGTACA 58.814 38.462 17.44 12.09 0.00 2.90
968 1101 1.212935 GTTAGGTCTCATGGTGCCCAT 59.787 52.381 1.21 1.21 46.37 4.00
969 1102 0.618458 GTTAGGTCTCATGGTGCCCA 59.382 55.000 0.00 0.00 38.19 5.36
985 1118 8.806429 ATGATGAACATGGAAGTGTATTGTTA 57.194 30.769 0.00 0.00 37.87 2.41
1041 1174 4.596585 GGTGGTGGGTGGTGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
1073 1206 1.204146 CCAGTTAGCTCTAGCCCCAA 58.796 55.000 0.00 0.00 43.38 4.12
1112 1245 1.153086 GATTGGCCGGAGAGCATGT 60.153 57.895 5.05 0.00 0.00 3.21
1123 1256 2.242043 CTTCATATGGTGGGATTGGCC 58.758 52.381 2.13 0.00 0.00 5.36
1126 1259 4.796606 AGAACCTTCATATGGTGGGATTG 58.203 43.478 15.79 0.00 37.93 2.67
1133 1266 1.202533 CGGCGAGAACCTTCATATGGT 60.203 52.381 0.00 0.00 39.91 3.55
1134 1267 1.202533 ACGGCGAGAACCTTCATATGG 60.203 52.381 16.62 0.00 0.00 2.74
1138 1271 0.391263 GGAACGGCGAGAACCTTCAT 60.391 55.000 16.62 0.00 0.00 2.57
1161 1294 1.228552 GTTGCCTTGGGAGCTGGAA 60.229 57.895 0.00 0.00 0.00 3.53
1188 1321 5.531634 AGTTTTGTATGTTGGCTGATGTTG 58.468 37.500 0.00 0.00 0.00 3.33
1238 1371 6.489603 TGTTCTACCAAATACCAATGGATGT 58.510 36.000 6.16 0.00 39.12 3.06
1258 1391 8.604035 TGAAGCTATTTGACGAGATTATTGTTC 58.396 33.333 0.00 0.00 0.00 3.18
1259 1392 8.492673 TGAAGCTATTTGACGAGATTATTGTT 57.507 30.769 0.00 0.00 0.00 2.83
1260 1393 8.668510 ATGAAGCTATTTGACGAGATTATTGT 57.331 30.769 0.00 0.00 0.00 2.71
1312 1524 4.091509 CGAAGAACTTGTCCGTCCTAATTG 59.908 45.833 0.00 0.00 0.00 2.32
1351 1563 1.398451 CGTCAAGTTCGTTGTCATGGC 60.398 52.381 0.00 0.00 37.43 4.40
1358 1570 3.571571 TCCATACTCGTCAAGTTCGTTG 58.428 45.455 0.00 0.00 39.55 4.10
1425 1637 5.064962 ACTGCAAACAAACATCATTTTGGTG 59.935 36.000 0.00 0.39 40.25 4.17
1503 1715 2.101965 CCTCTCGAGCTGCAGACG 59.898 66.667 20.43 21.22 0.00 4.18
1522 1734 4.189188 CCAATGCTCGCAGCCAGC 62.189 66.667 4.83 4.83 41.51 4.85
1546 1758 2.186903 CGTGCTACGGAGGCCATT 59.813 61.111 5.01 0.00 38.08 3.16
1556 1768 4.084888 GTTGCCGGTGCGTGCTAC 62.085 66.667 1.90 0.00 41.78 3.58
1585 1797 0.689623 ACTTGAGGTTCAGCTCCAGG 59.310 55.000 10.81 1.77 0.00 4.45
1665 1877 7.995488 AGATAAGTTGACCTGGGATAAATCTTG 59.005 37.037 0.00 0.00 0.00 3.02
1698 1911 9.727859 TTAGCACATTTTCTTATACACTTGGTA 57.272 29.630 0.00 0.00 36.16 3.25
1799 2014 9.751542 CTTTGACCAAAGTCTATAGAACGATAT 57.248 33.333 3.40 0.00 43.91 1.63
1835 2050 3.281727 AGCTTTGTCCTCAGTCAAACA 57.718 42.857 0.00 0.00 29.74 2.83
1945 2160 9.651718 GCGTGGTTATTAAATCTCTTCTATTTG 57.348 33.333 0.00 0.00 0.00 2.32
1954 2169 6.360148 CGTAGAGAGCGTGGTTATTAAATCTC 59.640 42.308 0.00 0.00 33.70 2.75
1962 2177 1.100510 TGCGTAGAGAGCGTGGTTAT 58.899 50.000 0.00 0.00 37.44 1.89
1970 2185 5.718649 TTAATCAAATGTGCGTAGAGAGC 57.281 39.130 0.00 0.00 0.00 4.09
2038 2253 4.058817 CAAGTATCCTCACGCCCTTTATC 58.941 47.826 0.00 0.00 0.00 1.75
2049 2264 6.358974 TGAAGTGATCAACAAGTATCCTCA 57.641 37.500 0.00 0.00 34.30 3.86
2059 2274 3.501950 CGTCTCGATGAAGTGATCAACA 58.498 45.455 0.00 0.00 42.54 3.33
2120 2335 2.202349 GGCGCGTTCATGTTGAGC 60.202 61.111 8.43 0.00 0.00 4.26
2156 2371 7.601073 TGATCAATAGTGTGTGTTTGAGATC 57.399 36.000 0.00 0.00 32.13 2.75
2168 2383 3.686016 GTGTGGGGTTGATCAATAGTGT 58.314 45.455 12.12 0.00 0.00 3.55
2332 2549 7.589395 CGAGTATACTGATCTTCATGCTAACT 58.411 38.462 10.90 0.00 0.00 2.24
2399 2616 4.827284 CCAGAGGGGCGAACATATTTTAAT 59.173 41.667 0.00 0.00 0.00 1.40
2564 2784 0.107703 CCTCTAGATGCCGGCACAAA 60.108 55.000 35.50 18.79 0.00 2.83
2632 2852 3.897657 TGGGAGATAGAGGGATACGTT 57.102 47.619 0.00 0.00 37.60 3.99
2635 2855 7.841729 TGAAAGATATGGGAGATAGAGGGATAC 59.158 40.741 0.00 0.00 0.00 2.24
2641 2861 7.739825 TGGTTTGAAAGATATGGGAGATAGAG 58.260 38.462 0.00 0.00 0.00 2.43
2671 3297 9.125026 TGCTCAAAAATAAGGGAGAATATCTTC 57.875 33.333 0.00 0.00 0.00 2.87
2705 3571 5.469760 TGTATTGGCTCGATATGACATTTGG 59.530 40.000 0.00 0.00 0.00 3.28
2731 3597 1.002624 GGGTGTTCGCTCATTGGGA 60.003 57.895 0.00 0.00 35.75 4.37
2757 3624 4.079980 TGGTTGTGTGCACTTACTATGT 57.920 40.909 19.41 0.00 0.00 2.29
2800 3668 2.772568 TGAAACGTGTTGCTCCATTG 57.227 45.000 0.00 0.00 0.00 2.82
2815 3683 5.241506 GGTGATGGTTTCAGTGATCTTGAAA 59.758 40.000 16.79 16.79 34.17 2.69
2828 3699 2.280628 GACGGATGAGGTGATGGTTTC 58.719 52.381 0.00 0.00 0.00 2.78
2832 3703 1.050988 AGGGACGGATGAGGTGATGG 61.051 60.000 0.00 0.00 0.00 3.51
2840 3711 0.901114 TTCGACCAAGGGACGGATGA 60.901 55.000 7.24 0.00 40.79 2.92
2841 3712 0.739813 GTTCGACCAAGGGACGGATG 60.740 60.000 7.24 0.00 40.79 3.51
2857 3728 3.350219 TGGTCTGGCTATCTTTGGTTC 57.650 47.619 0.00 0.00 0.00 3.62
2865 3736 5.904362 ATGAAAGTTTTGGTCTGGCTATC 57.096 39.130 0.00 0.00 0.00 2.08
2902 3773 9.763465 GCCATTTTTCAATAATGTCATTTTCAG 57.237 29.630 2.79 0.00 32.38 3.02
2907 3778 7.830201 ACATGGCCATTTTTCAATAATGTCATT 59.170 29.630 17.92 3.06 32.38 2.57
2908 3779 7.340256 ACATGGCCATTTTTCAATAATGTCAT 58.660 30.769 17.92 1.89 32.38 3.06
2909 3780 6.709281 ACATGGCCATTTTTCAATAATGTCA 58.291 32.000 17.92 0.00 32.38 3.58
2911 3782 7.999450 AAACATGGCCATTTTTCAATAATGT 57.001 28.000 21.62 9.01 32.38 2.71
2915 3786 9.512588 ACATAAAAACATGGCCATTTTTCAATA 57.487 25.926 26.04 19.48 38.58 1.90
2917 3788 7.307632 CGACATAAAAACATGGCCATTTTTCAA 60.308 33.333 26.04 18.31 38.58 2.69
2918 3789 6.146837 CGACATAAAAACATGGCCATTTTTCA 59.853 34.615 26.04 18.34 38.58 2.69
2919 3790 6.367422 TCGACATAAAAACATGGCCATTTTTC 59.633 34.615 26.04 14.04 38.58 2.29
2920 3791 6.226787 TCGACATAAAAACATGGCCATTTTT 58.773 32.000 25.44 25.44 40.28 1.94
2978 3849 7.435068 TGTTTCAAGCTCTTTGTATAGGTTC 57.565 36.000 0.00 0.00 38.01 3.62
3017 3888 5.460091 CCATGTCAGAGTTGTACATGTATCG 59.540 44.000 9.18 0.29 45.78 2.92
3050 3921 2.873472 ACAACCGACTAAAACGATTGCA 59.127 40.909 0.00 0.00 37.73 4.08
3065 3936 6.590292 AGATTTGTACAGATCACTAACAACCG 59.410 38.462 23.91 0.00 33.77 4.44
3128 4000 5.555966 TGCATGGATCACTTAACTGTTGTA 58.444 37.500 2.69 0.00 0.00 2.41
3130 4002 5.124297 TCATGCATGGATCACTTAACTGTTG 59.876 40.000 25.97 0.00 0.00 3.33
3131 4003 5.255687 TCATGCATGGATCACTTAACTGTT 58.744 37.500 25.97 0.00 0.00 3.16
3133 4005 5.823209 TTCATGCATGGATCACTTAACTG 57.177 39.130 25.97 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.