Multiple sequence alignment - TraesCS3D01G030900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G030900 chr3D 100.000 2726 0 0 1 2726 11369269 11371994 0.000000e+00 5035.0
1 TraesCS3D01G030900 chr3D 87.570 1617 182 12 983 2582 11772880 11771266 0.000000e+00 1855.0
2 TraesCS3D01G030900 chr3D 80.603 1825 319 24 658 2468 11392917 11394720 0.000000e+00 1376.0
3 TraesCS3D01G030900 chr3D 83.028 1473 223 13 1000 2469 11361506 11362954 0.000000e+00 1310.0
4 TraesCS3D01G030900 chr3B 90.338 2277 186 21 283 2531 16048407 16050677 0.000000e+00 2955.0
5 TraesCS3D01G030900 chr3B 90.207 1256 104 12 418 1660 25260351 25259102 0.000000e+00 1620.0
6 TraesCS3D01G030900 chr3B 83.066 1494 222 17 981 2469 16035862 16037329 0.000000e+00 1328.0
7 TraesCS3D01G030900 chr3B 79.834 1805 330 22 656 2446 25249746 25247962 0.000000e+00 1286.0
8 TraesCS3D01G030900 chr3B 82.213 1473 219 17 1000 2469 25281676 25280244 0.000000e+00 1229.0
9 TraesCS3D01G030900 chr3B 87.591 137 9 4 12 148 16043220 16043348 4.700000e-33 152.0
10 TraesCS3D01G030900 chr3A 83.186 1475 216 18 1001 2469 25911590 25910142 0.000000e+00 1321.0
11 TraesCS3D01G030900 chr5A 82.911 158 19 2 400 550 352899864 352899708 4.730000e-28 135.0
12 TraesCS3D01G030900 chr5A 81.132 159 22 1 400 550 275102169 275102011 1.330000e-23 121.0
13 TraesCS3D01G030900 chr6A 82.803 157 20 2 400 549 157337473 157337317 1.700000e-27 134.0
14 TraesCS3D01G030900 chr6A 81.250 160 21 2 400 551 591650193 591650035 1.330000e-23 121.0
15 TraesCS3D01G030900 chr7A 81.646 158 23 2 400 551 109458020 109458177 2.850000e-25 126.0
16 TraesCS3D01G030900 chr6B 84.167 120 19 0 431 550 489835466 489835347 1.720000e-22 117.0
17 TraesCS3D01G030900 chr2A 81.746 126 20 1 425 550 751397182 751397304 4.800000e-18 102.0
18 TraesCS3D01G030900 chr2A 78.571 168 19 8 402 552 38803995 38803828 8.040000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G030900 chr3D 11369269 11371994 2725 False 5035 5035 100.000 1 2726 1 chr3D.!!$F2 2725
1 TraesCS3D01G030900 chr3D 11771266 11772880 1614 True 1855 1855 87.570 983 2582 1 chr3D.!!$R1 1599
2 TraesCS3D01G030900 chr3D 11392917 11394720 1803 False 1376 1376 80.603 658 2468 1 chr3D.!!$F3 1810
3 TraesCS3D01G030900 chr3D 11361506 11362954 1448 False 1310 1310 83.028 1000 2469 1 chr3D.!!$F1 1469
4 TraesCS3D01G030900 chr3B 16048407 16050677 2270 False 2955 2955 90.338 283 2531 1 chr3B.!!$F3 2248
5 TraesCS3D01G030900 chr3B 25259102 25260351 1249 True 1620 1620 90.207 418 1660 1 chr3B.!!$R2 1242
6 TraesCS3D01G030900 chr3B 16035862 16037329 1467 False 1328 1328 83.066 981 2469 1 chr3B.!!$F1 1488
7 TraesCS3D01G030900 chr3B 25247962 25249746 1784 True 1286 1286 79.834 656 2446 1 chr3B.!!$R1 1790
8 TraesCS3D01G030900 chr3B 25280244 25281676 1432 True 1229 1229 82.213 1000 2469 1 chr3B.!!$R3 1469
9 TraesCS3D01G030900 chr3A 25910142 25911590 1448 True 1321 1321 83.186 1001 2469 1 chr3A.!!$R1 1468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.033504 GTCCTGAAGTCAACCGCAGA 59.966 55.0 0.00 0.0 0.00 4.26 F
146 147 0.037232 GCAGACCTTGAAGGCGTAGT 60.037 55.0 11.96 0.0 39.63 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1077 1115 0.041684 TCTCCCCTGAGCATGTGAGA 59.958 55.0 0.0 0.0 38.58 3.27 R
1994 2033 0.250467 TGAACTCTCCTGCCAACAGC 60.250 55.0 0.0 0.0 43.02 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.256117 AAGTGGGTTACTGTGACTGC 57.744 50.000 2.63 0.00 40.26 4.40
20 21 1.128200 AGTGGGTTACTGTGACTGCA 58.872 50.000 2.63 0.00 38.49 4.41
21 22 1.488812 AGTGGGTTACTGTGACTGCAA 59.511 47.619 2.63 0.00 38.49 4.08
22 23 2.092646 AGTGGGTTACTGTGACTGCAAA 60.093 45.455 2.63 0.00 38.49 3.68
23 24 2.884639 GTGGGTTACTGTGACTGCAAAT 59.115 45.455 2.63 0.00 0.00 2.32
24 25 4.069304 GTGGGTTACTGTGACTGCAAATA 58.931 43.478 2.63 0.00 0.00 1.40
25 26 4.154195 GTGGGTTACTGTGACTGCAAATAG 59.846 45.833 2.63 0.00 0.00 1.73
26 27 4.041075 TGGGTTACTGTGACTGCAAATAGA 59.959 41.667 2.63 0.00 0.00 1.98
27 28 5.186198 GGGTTACTGTGACTGCAAATAGAT 58.814 41.667 2.63 0.00 0.00 1.98
28 29 6.070481 TGGGTTACTGTGACTGCAAATAGATA 60.070 38.462 2.63 0.00 0.00 1.98
29 30 6.992715 GGGTTACTGTGACTGCAAATAGATAT 59.007 38.462 2.63 0.00 0.00 1.63
30 31 7.499232 GGGTTACTGTGACTGCAAATAGATATT 59.501 37.037 2.63 0.00 0.00 1.28
31 32 8.552034 GGTTACTGTGACTGCAAATAGATATTC 58.448 37.037 2.63 0.00 0.00 1.75
32 33 9.319143 GTTACTGTGACTGCAAATAGATATTCT 57.681 33.333 0.00 0.00 0.00 2.40
33 34 9.890629 TTACTGTGACTGCAAATAGATATTCTT 57.109 29.630 0.00 0.00 0.00 2.52
34 35 8.430801 ACTGTGACTGCAAATAGATATTCTTC 57.569 34.615 0.00 0.00 0.00 2.87
35 36 7.497249 ACTGTGACTGCAAATAGATATTCTTCC 59.503 37.037 0.00 0.00 0.00 3.46
36 37 7.337938 TGTGACTGCAAATAGATATTCTTCCA 58.662 34.615 0.00 0.00 0.00 3.53
37 38 7.994911 TGTGACTGCAAATAGATATTCTTCCAT 59.005 33.333 0.00 0.00 0.00 3.41
38 39 8.288208 GTGACTGCAAATAGATATTCTTCCATG 58.712 37.037 0.00 0.00 0.00 3.66
39 40 7.446319 TGACTGCAAATAGATATTCTTCCATGG 59.554 37.037 4.97 4.97 0.00 3.66
40 41 6.718454 ACTGCAAATAGATATTCTTCCATGGG 59.282 38.462 13.02 0.00 0.00 4.00
41 42 6.012113 TGCAAATAGATATTCTTCCATGGGG 58.988 40.000 13.02 5.58 0.00 4.96
42 43 6.183361 TGCAAATAGATATTCTTCCATGGGGA 60.183 38.462 13.02 8.07 43.03 4.81
43 44 6.894103 GCAAATAGATATTCTTCCATGGGGAT 59.106 38.462 13.02 0.00 44.48 3.85
44 45 7.398332 GCAAATAGATATTCTTCCATGGGGATT 59.602 37.037 13.02 9.57 44.48 3.01
45 46 9.317827 CAAATAGATATTCTTCCATGGGGATTT 57.682 33.333 13.02 4.08 44.48 2.17
46 47 9.903190 AAATAGATATTCTTCCATGGGGATTTT 57.097 29.630 13.02 3.09 44.48 1.82
47 48 9.903190 AATAGATATTCTTCCATGGGGATTTTT 57.097 29.630 13.02 0.00 44.48 1.94
87 88 4.764679 TTGAGAATGTTGTTTCCATCCG 57.235 40.909 0.00 0.00 0.00 4.18
88 89 2.487762 TGAGAATGTTGTTTCCATCCGC 59.512 45.455 0.00 0.00 0.00 5.54
89 90 2.749621 GAGAATGTTGTTTCCATCCGCT 59.250 45.455 0.00 0.00 0.00 5.52
90 91 3.157087 AGAATGTTGTTTCCATCCGCTT 58.843 40.909 0.00 0.00 0.00 4.68
91 92 3.191371 AGAATGTTGTTTCCATCCGCTTC 59.809 43.478 0.00 0.00 0.00 3.86
92 93 0.871722 TGTTGTTTCCATCCGCTTCG 59.128 50.000 0.00 0.00 0.00 3.79
93 94 0.872388 GTTGTTTCCATCCGCTTCGT 59.128 50.000 0.00 0.00 0.00 3.85
94 95 1.136057 GTTGTTTCCATCCGCTTCGTC 60.136 52.381 0.00 0.00 0.00 4.20
95 96 0.672401 TGTTTCCATCCGCTTCGTCC 60.672 55.000 0.00 0.00 0.00 4.79
96 97 0.672401 GTTTCCATCCGCTTCGTCCA 60.672 55.000 0.00 0.00 0.00 4.02
97 98 0.251916 TTTCCATCCGCTTCGTCCAT 59.748 50.000 0.00 0.00 0.00 3.41
98 99 0.461870 TTCCATCCGCTTCGTCCATG 60.462 55.000 0.00 0.00 0.00 3.66
99 100 1.153369 CCATCCGCTTCGTCCATGT 60.153 57.895 0.00 0.00 0.00 3.21
100 101 1.154205 CCATCCGCTTCGTCCATGTC 61.154 60.000 0.00 0.00 0.00 3.06
101 102 1.226974 ATCCGCTTCGTCCATGTCG 60.227 57.895 0.00 0.00 0.00 4.35
102 103 1.663379 ATCCGCTTCGTCCATGTCGA 61.663 55.000 6.21 6.21 35.50 4.20
103 104 2.158959 CCGCTTCGTCCATGTCGAC 61.159 63.158 9.11 9.11 37.05 4.20
109 110 4.478195 GTCCATGTCGACGTCCTG 57.522 61.111 7.47 3.88 0.00 3.86
110 111 1.880894 GTCCATGTCGACGTCCTGA 59.119 57.895 7.47 2.20 0.00 3.86
111 112 0.242825 GTCCATGTCGACGTCCTGAA 59.757 55.000 7.47 0.00 0.00 3.02
112 113 0.526211 TCCATGTCGACGTCCTGAAG 59.474 55.000 7.47 0.00 0.00 3.02
113 114 0.243907 CCATGTCGACGTCCTGAAGT 59.756 55.000 7.47 0.00 0.00 3.01
114 115 1.618861 CATGTCGACGTCCTGAAGTC 58.381 55.000 7.47 3.52 36.65 3.01
115 116 1.068541 CATGTCGACGTCCTGAAGTCA 60.069 52.381 7.47 0.00 39.29 3.41
116 117 1.026584 TGTCGACGTCCTGAAGTCAA 58.973 50.000 10.58 0.00 39.29 3.18
117 118 1.268896 TGTCGACGTCCTGAAGTCAAC 60.269 52.381 10.58 5.84 39.29 3.18
118 119 0.313043 TCGACGTCCTGAAGTCAACC 59.687 55.000 10.58 0.00 39.29 3.77
119 120 1.002250 CGACGTCCTGAAGTCAACCG 61.002 60.000 10.58 0.00 39.29 4.44
120 121 1.282930 GACGTCCTGAAGTCAACCGC 61.283 60.000 3.51 0.00 39.18 5.68
121 122 1.300620 CGTCCTGAAGTCAACCGCA 60.301 57.895 0.00 0.00 0.00 5.69
122 123 1.284982 CGTCCTGAAGTCAACCGCAG 61.285 60.000 0.00 0.00 0.00 5.18
123 124 0.033504 GTCCTGAAGTCAACCGCAGA 59.966 55.000 0.00 0.00 0.00 4.26
124 125 0.033504 TCCTGAAGTCAACCGCAGAC 59.966 55.000 0.00 0.00 36.26 3.51
125 126 0.951040 CCTGAAGTCAACCGCAGACC 60.951 60.000 0.00 0.00 36.68 3.85
126 127 0.249868 CTGAAGTCAACCGCAGACCA 60.250 55.000 0.00 0.00 36.68 4.02
127 128 0.249868 TGAAGTCAACCGCAGACCAG 60.250 55.000 0.00 0.00 36.68 4.00
128 129 1.569479 GAAGTCAACCGCAGACCAGC 61.569 60.000 0.00 0.00 36.68 4.85
129 130 2.280797 GTCAACCGCAGACCAGCA 60.281 61.111 0.00 0.00 0.00 4.41
130 131 2.031012 TCAACCGCAGACCAGCAG 59.969 61.111 0.00 0.00 0.00 4.24
131 132 2.031012 CAACCGCAGACCAGCAGA 59.969 61.111 0.00 0.00 0.00 4.26
132 133 2.031163 AACCGCAGACCAGCAGAC 59.969 61.111 0.00 0.00 0.00 3.51
133 134 3.537206 AACCGCAGACCAGCAGACC 62.537 63.158 0.00 0.00 0.00 3.85
134 135 3.699894 CCGCAGACCAGCAGACCT 61.700 66.667 0.00 0.00 0.00 3.85
135 136 2.345244 CGCAGACCAGCAGACCTT 59.655 61.111 0.00 0.00 0.00 3.50
136 137 2.031516 CGCAGACCAGCAGACCTTG 61.032 63.158 0.00 0.00 0.00 3.61
137 138 1.372683 GCAGACCAGCAGACCTTGA 59.627 57.895 0.00 0.00 0.00 3.02
138 139 0.250467 GCAGACCAGCAGACCTTGAA 60.250 55.000 0.00 0.00 0.00 2.69
139 140 1.805869 CAGACCAGCAGACCTTGAAG 58.194 55.000 0.00 0.00 0.00 3.02
140 141 0.689623 AGACCAGCAGACCTTGAAGG 59.310 55.000 10.24 10.24 42.49 3.46
141 142 0.957888 GACCAGCAGACCTTGAAGGC 60.958 60.000 11.96 4.29 39.63 4.35
142 143 2.037136 CCAGCAGACCTTGAAGGCG 61.037 63.158 11.96 1.05 39.63 5.52
143 144 1.302033 CAGCAGACCTTGAAGGCGT 60.302 57.895 11.96 0.00 39.63 5.68
144 145 0.037326 CAGCAGACCTTGAAGGCGTA 60.037 55.000 11.96 0.00 39.63 4.42
145 146 0.247736 AGCAGACCTTGAAGGCGTAG 59.752 55.000 11.96 0.03 39.63 3.51
146 147 0.037232 GCAGACCTTGAAGGCGTAGT 60.037 55.000 11.96 0.00 39.63 2.73
147 148 1.608283 GCAGACCTTGAAGGCGTAGTT 60.608 52.381 11.96 0.00 39.63 2.24
148 149 2.767505 CAGACCTTGAAGGCGTAGTTT 58.232 47.619 11.96 0.00 39.63 2.66
149 150 2.737252 CAGACCTTGAAGGCGTAGTTTC 59.263 50.000 11.96 0.00 39.63 2.78
150 151 2.367567 AGACCTTGAAGGCGTAGTTTCA 59.632 45.455 11.96 0.00 39.63 2.69
151 152 3.008049 AGACCTTGAAGGCGTAGTTTCAT 59.992 43.478 11.96 0.00 39.63 2.57
152 153 3.074412 ACCTTGAAGGCGTAGTTTCATG 58.926 45.455 11.96 0.00 39.63 3.07
153 154 3.074412 CCTTGAAGGCGTAGTTTCATGT 58.926 45.455 0.00 0.00 34.42 3.21
154 155 3.125316 CCTTGAAGGCGTAGTTTCATGTC 59.875 47.826 0.00 0.00 34.42 3.06
155 156 3.394674 TGAAGGCGTAGTTTCATGTCA 57.605 42.857 0.00 0.00 30.79 3.58
156 157 3.937814 TGAAGGCGTAGTTTCATGTCAT 58.062 40.909 0.00 0.00 30.79 3.06
157 158 3.932710 TGAAGGCGTAGTTTCATGTCATC 59.067 43.478 0.00 0.00 30.79 2.92
158 159 2.906354 AGGCGTAGTTTCATGTCATCC 58.094 47.619 0.00 0.00 0.00 3.51
159 160 1.940613 GGCGTAGTTTCATGTCATCCC 59.059 52.381 0.00 0.00 0.00 3.85
160 161 2.627945 GCGTAGTTTCATGTCATCCCA 58.372 47.619 0.00 0.00 0.00 4.37
161 162 2.351726 GCGTAGTTTCATGTCATCCCAC 59.648 50.000 0.00 0.00 0.00 4.61
162 163 3.595173 CGTAGTTTCATGTCATCCCACA 58.405 45.455 0.00 0.00 0.00 4.17
163 164 4.191544 CGTAGTTTCATGTCATCCCACAT 58.808 43.478 0.00 0.00 37.49 3.21
164 165 4.271049 CGTAGTTTCATGTCATCCCACATC 59.729 45.833 0.00 0.00 34.60 3.06
165 166 4.581309 AGTTTCATGTCATCCCACATCT 57.419 40.909 0.00 0.00 34.60 2.90
166 167 5.698741 AGTTTCATGTCATCCCACATCTA 57.301 39.130 0.00 0.00 34.60 1.98
167 168 5.431765 AGTTTCATGTCATCCCACATCTAC 58.568 41.667 0.00 0.00 34.60 2.59
168 169 4.422073 TTCATGTCATCCCACATCTACC 57.578 45.455 0.00 0.00 34.60 3.18
169 170 2.705658 TCATGTCATCCCACATCTACCC 59.294 50.000 0.00 0.00 34.60 3.69
170 171 2.262266 TGTCATCCCACATCTACCCA 57.738 50.000 0.00 0.00 0.00 4.51
171 172 1.837439 TGTCATCCCACATCTACCCAC 59.163 52.381 0.00 0.00 0.00 4.61
172 173 1.119684 TCATCCCACATCTACCCACG 58.880 55.000 0.00 0.00 0.00 4.94
173 174 1.119684 CATCCCACATCTACCCACGA 58.880 55.000 0.00 0.00 0.00 4.35
174 175 1.694150 CATCCCACATCTACCCACGAT 59.306 52.381 0.00 0.00 0.00 3.73
175 176 1.410004 TCCCACATCTACCCACGATC 58.590 55.000 0.00 0.00 0.00 3.69
176 177 1.063190 TCCCACATCTACCCACGATCT 60.063 52.381 0.00 0.00 0.00 2.75
177 178 2.176148 TCCCACATCTACCCACGATCTA 59.824 50.000 0.00 0.00 0.00 1.98
178 179 2.558795 CCCACATCTACCCACGATCTAG 59.441 54.545 0.00 0.00 0.00 2.43
179 180 3.223435 CCACATCTACCCACGATCTAGT 58.777 50.000 0.00 0.00 0.00 2.57
180 181 3.253677 CCACATCTACCCACGATCTAGTC 59.746 52.174 0.00 0.00 0.00 2.59
189 190 1.502640 CGATCTAGTCGGCGATCCC 59.497 63.158 14.79 0.00 46.47 3.85
190 191 1.235281 CGATCTAGTCGGCGATCCCA 61.235 60.000 14.79 0.00 46.47 4.37
191 192 0.523966 GATCTAGTCGGCGATCCCAG 59.476 60.000 14.79 8.23 31.95 4.45
192 193 0.896019 ATCTAGTCGGCGATCCCAGG 60.896 60.000 14.79 0.91 0.00 4.45
193 194 1.828660 CTAGTCGGCGATCCCAGGT 60.829 63.158 14.79 0.00 0.00 4.00
194 195 1.797211 CTAGTCGGCGATCCCAGGTC 61.797 65.000 14.79 0.00 0.00 3.85
195 196 2.561467 TAGTCGGCGATCCCAGGTCA 62.561 60.000 14.79 0.00 0.00 4.02
196 197 2.682136 TCGGCGATCCCAGGTCAA 60.682 61.111 4.99 0.00 0.00 3.18
197 198 2.202932 CGGCGATCCCAGGTCAAG 60.203 66.667 0.00 0.00 0.00 3.02
198 199 2.190578 GGCGATCCCAGGTCAAGG 59.809 66.667 0.00 0.00 0.00 3.61
207 208 4.003788 AGGTCAAGGGACGTGGCG 62.004 66.667 0.00 0.00 44.93 5.69
208 209 4.309950 GGTCAAGGGACGTGGCGT 62.310 66.667 0.00 0.00 44.93 5.68
209 210 2.280592 GTCAAGGGACGTGGCGTT 60.281 61.111 0.00 0.00 41.37 4.84
210 211 2.280524 TCAAGGGACGTGGCGTTG 60.281 61.111 0.00 0.00 41.37 4.10
211 212 2.590575 CAAGGGACGTGGCGTTGT 60.591 61.111 0.00 0.00 41.37 3.32
212 213 2.184167 CAAGGGACGTGGCGTTGTT 61.184 57.895 0.00 0.00 41.37 2.83
213 214 1.890510 AAGGGACGTGGCGTTGTTC 60.891 57.895 0.00 0.00 41.37 3.18
214 215 3.351416 GGGACGTGGCGTTGTTCC 61.351 66.667 0.00 0.00 41.37 3.62
215 216 3.351416 GGACGTGGCGTTGTTCCC 61.351 66.667 0.00 0.00 41.37 3.97
216 217 2.280592 GACGTGGCGTTGTTCCCT 60.281 61.111 0.00 0.00 41.37 4.20
217 218 2.590575 ACGTGGCGTTGTTCCCTG 60.591 61.111 0.00 0.00 36.35 4.45
218 219 3.353836 CGTGGCGTTGTTCCCTGG 61.354 66.667 0.00 0.00 0.00 4.45
219 220 2.203294 GTGGCGTTGTTCCCTGGT 60.203 61.111 0.00 0.00 0.00 4.00
220 221 1.826487 GTGGCGTTGTTCCCTGGTT 60.826 57.895 0.00 0.00 0.00 3.67
221 222 1.527380 TGGCGTTGTTCCCTGGTTC 60.527 57.895 0.00 0.00 0.00 3.62
222 223 1.228154 GGCGTTGTTCCCTGGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
223 224 1.515521 GGCGTTGTTCCCTGGTTCTG 61.516 60.000 0.00 0.00 0.00 3.02
224 225 1.515521 GCGTTGTTCCCTGGTTCTGG 61.516 60.000 0.00 0.00 0.00 3.86
225 226 1.515521 CGTTGTTCCCTGGTTCTGGC 61.516 60.000 0.00 0.00 0.00 4.85
226 227 0.178990 GTTGTTCCCTGGTTCTGGCT 60.179 55.000 0.00 0.00 0.00 4.75
227 228 1.073284 GTTGTTCCCTGGTTCTGGCTA 59.927 52.381 0.00 0.00 0.00 3.93
228 229 0.690762 TGTTCCCTGGTTCTGGCTAC 59.309 55.000 0.00 0.00 0.00 3.58
229 230 0.690762 GTTCCCTGGTTCTGGCTACA 59.309 55.000 0.00 0.00 0.00 2.74
230 231 1.073284 GTTCCCTGGTTCTGGCTACAA 59.927 52.381 0.00 0.00 0.00 2.41
231 232 1.668826 TCCCTGGTTCTGGCTACAAT 58.331 50.000 0.00 0.00 0.00 2.71
232 233 1.281867 TCCCTGGTTCTGGCTACAATG 59.718 52.381 0.00 0.00 0.00 2.82
233 234 1.683011 CCCTGGTTCTGGCTACAATGG 60.683 57.143 0.00 0.00 0.00 3.16
234 235 1.004745 CCTGGTTCTGGCTACAATGGT 59.995 52.381 0.00 0.00 0.00 3.55
235 236 2.359900 CTGGTTCTGGCTACAATGGTC 58.640 52.381 0.00 0.00 0.00 4.02
236 237 1.985159 TGGTTCTGGCTACAATGGTCT 59.015 47.619 0.00 0.00 0.00 3.85
237 238 3.178046 TGGTTCTGGCTACAATGGTCTA 58.822 45.455 0.00 0.00 0.00 2.59
238 239 3.055385 TGGTTCTGGCTACAATGGTCTAC 60.055 47.826 0.00 0.00 0.00 2.59
239 240 3.197983 GGTTCTGGCTACAATGGTCTACT 59.802 47.826 0.00 0.00 0.00 2.57
240 241 4.323562 GGTTCTGGCTACAATGGTCTACTT 60.324 45.833 0.00 0.00 0.00 2.24
241 242 5.246307 GTTCTGGCTACAATGGTCTACTTT 58.754 41.667 0.00 0.00 0.00 2.66
242 243 6.403878 GTTCTGGCTACAATGGTCTACTTTA 58.596 40.000 0.00 0.00 0.00 1.85
243 244 6.222038 TCTGGCTACAATGGTCTACTTTAG 57.778 41.667 0.00 0.00 0.00 1.85
244 245 5.720041 TCTGGCTACAATGGTCTACTTTAGT 59.280 40.000 0.00 0.00 0.00 2.24
245 246 6.212791 TCTGGCTACAATGGTCTACTTTAGTT 59.787 38.462 0.00 0.00 0.00 2.24
246 247 6.403878 TGGCTACAATGGTCTACTTTAGTTC 58.596 40.000 0.00 0.00 0.00 3.01
247 248 6.014070 TGGCTACAATGGTCTACTTTAGTTCA 60.014 38.462 0.00 0.00 0.00 3.18
248 249 7.048512 GGCTACAATGGTCTACTTTAGTTCAT 58.951 38.462 0.00 0.00 0.00 2.57
249 250 8.202137 GGCTACAATGGTCTACTTTAGTTCATA 58.798 37.037 0.00 0.00 0.00 2.15
250 251 9.250624 GCTACAATGGTCTACTTTAGTTCATAG 57.749 37.037 0.00 0.00 0.00 2.23
251 252 9.751542 CTACAATGGTCTACTTTAGTTCATAGG 57.248 37.037 0.00 0.00 0.00 2.57
252 253 8.147244 ACAATGGTCTACTTTAGTTCATAGGT 57.853 34.615 0.00 0.00 0.00 3.08
253 254 8.603304 ACAATGGTCTACTTTAGTTCATAGGTT 58.397 33.333 0.00 0.00 0.00 3.50
257 258 9.537852 TGGTCTACTTTAGTTCATAGGTTAAGA 57.462 33.333 0.00 0.00 0.00 2.10
275 276 9.807921 AGGTTAAGAATATCAAAGGAACAGAAA 57.192 29.630 0.00 0.00 0.00 2.52
291 292 9.889128 AGGAACAGAAAAATCAAAGAAAATGAA 57.111 25.926 0.00 0.00 0.00 2.57
365 366 9.726438 ATAGTGTTGAAGTATAAATCATAGCCC 57.274 33.333 0.00 0.00 0.00 5.19
366 367 7.573710 AGTGTTGAAGTATAAATCATAGCCCA 58.426 34.615 0.00 0.00 0.00 5.36
367 368 8.220559 AGTGTTGAAGTATAAATCATAGCCCAT 58.779 33.333 0.00 0.00 0.00 4.00
369 370 8.439971 TGTTGAAGTATAAATCATAGCCCATCT 58.560 33.333 0.00 0.00 0.00 2.90
372 373 9.866655 TGAAGTATAAATCATAGCCCATCTTTT 57.133 29.630 0.00 0.00 0.00 2.27
380 381 6.753913 TCATAGCCCATCTTTTCTCTACAT 57.246 37.500 0.00 0.00 0.00 2.29
382 383 8.262601 TCATAGCCCATCTTTTCTCTACATAA 57.737 34.615 0.00 0.00 0.00 1.90
454 463 4.243270 GGATTGGTCCGTATACTGCATAC 58.757 47.826 0.56 0.00 36.85 2.39
484 493 7.550712 AGGAATCCATTCTTACAAATCAAAGC 58.449 34.615 0.61 0.00 37.00 3.51
497 506 4.871933 AATCAAAGCGGTCCAAAGAAAT 57.128 36.364 0.00 0.00 0.00 2.17
554 563 3.011708 ACAAACCAAAGGAGGCCTATGAT 59.988 43.478 4.42 0.00 31.13 2.45
555 564 4.229582 ACAAACCAAAGGAGGCCTATGATA 59.770 41.667 4.42 0.00 31.13 2.15
556 565 5.200483 CAAACCAAAGGAGGCCTATGATAA 58.800 41.667 4.42 0.00 31.13 1.75
557 566 5.466127 AACCAAAGGAGGCCTATGATAAA 57.534 39.130 4.42 0.00 31.13 1.40
558 567 5.466127 ACCAAAGGAGGCCTATGATAAAA 57.534 39.130 4.42 0.00 31.13 1.52
559 568 5.837829 ACCAAAGGAGGCCTATGATAAAAA 58.162 37.500 4.42 0.00 31.13 1.94
581 599 6.391227 AAAAATTACGGGAATCTGGCTATG 57.609 37.500 0.00 0.00 0.00 2.23
604 622 7.812309 TGATGATTTGACTTAGACTTACACG 57.188 36.000 0.00 0.00 0.00 4.49
631 652 6.598753 TGCTTTCCTAATCTAATTACACGC 57.401 37.500 0.00 0.00 0.00 5.34
685 707 3.195610 CAGATTAGTGTAGGCCTGTCACA 59.804 47.826 30.59 20.26 34.94 3.58
759 787 0.612744 TCAAGATGCATCCGTGGTGA 59.387 50.000 23.06 14.98 0.00 4.02
773 801 1.618837 GTGGTGAGAACTGCCTCTACA 59.381 52.381 0.00 0.00 34.38 2.74
824 853 2.673368 GACGTGGATTGATCACCAAGAC 59.327 50.000 20.23 12.85 38.31 3.01
879 908 6.925165 GCAATACCATGTCATCCATTTAAAGG 59.075 38.462 0.00 0.00 0.00 3.11
912 942 4.681744 CTCAGAACCTGATCTCTACAAGC 58.318 47.826 0.00 0.00 39.92 4.01
927 957 6.151985 TCTCTACAAGCTGAAAACCAAAACAA 59.848 34.615 0.00 0.00 0.00 2.83
943 976 6.152379 CCAAAACAATTTCCTCTACAAGCTC 58.848 40.000 0.00 0.00 0.00 4.09
945 978 6.566197 AAACAATTTCCTCTACAAGCTCAG 57.434 37.500 0.00 0.00 0.00 3.35
956 990 6.092807 CCTCTACAAGCTCAGAACCAAAATAC 59.907 42.308 0.00 0.00 0.00 1.89
996 1034 7.225011 CCCTTTAGTCTCAACCTAGAGTTTTT 58.775 38.462 0.00 0.00 36.18 1.94
1035 1073 0.389948 CTGCGGTTACAGGTGACCTC 60.390 60.000 0.00 4.38 37.12 3.85
1067 1105 8.517878 CAGATTTTTCTCCTTTCTGATAAGCAA 58.482 33.333 0.00 0.00 36.72 3.91
1077 1115 4.672587 TCTGATAAGCAAATACTCGGCT 57.327 40.909 0.00 0.00 40.14 5.52
1091 1129 1.521010 CGGCTCTCACATGCTCAGG 60.521 63.158 0.00 0.00 0.00 3.86
1122 1160 0.770499 TGGATGTGGAGAGGTTGCAA 59.230 50.000 0.00 0.00 0.00 4.08
1129 1167 1.490490 TGGAGAGGTTGCAACAACTCT 59.510 47.619 32.98 30.76 42.60 3.24
1173 1211 2.029666 GAGGCAGATGCGCGGTAT 59.970 61.111 8.83 0.00 43.26 2.73
1316 1354 3.567164 GTGATGGATACTGGCTCATTTGG 59.433 47.826 0.00 0.00 37.61 3.28
1370 1408 4.397382 CGCACAAACACTGATGTATCAAG 58.603 43.478 0.00 0.00 38.45 3.02
1424 1462 7.833183 AGAAGATGCCTTGTTGAATTTAGAGAT 59.167 33.333 0.00 0.00 31.62 2.75
1497 1535 3.470709 CATGTTTCGCAGACCCTATGAT 58.529 45.455 0.00 0.00 34.32 2.45
1557 1595 4.020928 TGGACCGAGAAGCAACAAGTTATA 60.021 41.667 0.00 0.00 0.00 0.98
1677 1715 3.733988 GCAATGATGAGAACGTCCGTAGA 60.734 47.826 0.00 0.00 0.00 2.59
1774 1813 6.485313 AGAACACTGGTTATTGTCGAATTTCA 59.515 34.615 0.00 0.00 37.36 2.69
1805 1844 3.955471 TGATGATGAGAAGTGGAAACCC 58.045 45.455 0.00 0.00 0.00 4.11
1876 1915 6.957631 TCATAAGTAGGATGGAAAGCTTGAA 58.042 36.000 0.00 0.00 0.00 2.69
1965 2004 5.376625 TCAAGACACTAGCATTTGGAAGTT 58.623 37.500 0.00 0.00 0.00 2.66
1970 2009 3.074412 ACTAGCATTTGGAAGTTCACGG 58.926 45.455 5.01 0.00 0.00 4.94
1993 2032 1.780309 TGAGGACCACCCAAAGTTGAT 59.220 47.619 0.00 0.00 37.41 2.57
1994 2033 2.162681 GAGGACCACCCAAAGTTGATG 58.837 52.381 0.00 0.00 37.41 3.07
2054 2093 4.096833 TCATTTGTGGCAGCATATTCAGTC 59.903 41.667 0.00 0.00 0.00 3.51
2083 2122 2.552031 GTTGAGGACGAATCTAAGCCC 58.448 52.381 0.00 0.00 0.00 5.19
2140 2179 7.338800 AGAATGTGATGAAGAACAACTTGTT 57.661 32.000 6.87 6.87 44.37 2.83
2159 2198 5.565592 TGTTCATGTTTGGTGAGCATATC 57.434 39.130 0.00 0.00 32.88 1.63
2172 2211 4.183539 GAGCATATCTCAAACCGTTTCG 57.816 45.455 0.00 0.00 41.51 3.46
2200 2239 3.868757 TTATCCAGTCGACTTCACCAG 57.131 47.619 17.26 3.06 0.00 4.00
2230 2271 1.599606 CTCCCGCTGCTCCGCTATAT 61.600 60.000 0.00 0.00 0.00 0.86
2231 2272 1.446792 CCCGCTGCTCCGCTATATG 60.447 63.158 0.00 0.00 0.00 1.78
2244 2285 3.449018 CCGCTATATGTTATGCCTCCTCT 59.551 47.826 0.00 0.00 0.00 3.69
2314 2355 4.021280 AGAGACATCATTGATGATCCCTCG 60.021 45.833 28.81 4.50 45.23 4.63
2315 2356 3.899980 AGACATCATTGATGATCCCTCGA 59.100 43.478 28.81 0.00 45.23 4.04
2319 2360 5.012871 ACATCATTGATGATCCCTCGATTCT 59.987 40.000 28.81 3.16 45.23 2.40
2375 2416 4.579850 TCAAGGATACCCCCTTATACCA 57.420 45.455 0.00 0.00 44.30 3.25
2425 2466 2.753452 TCAACCGCAACCTAAAACAACA 59.247 40.909 0.00 0.00 0.00 3.33
2465 2506 5.238006 AGCGACTATTTCTCTGTAGTGTC 57.762 43.478 0.00 0.00 31.61 3.67
2471 2527 8.666573 CGACTATTTCTCTGTAGTGTCTTTCTA 58.333 37.037 0.00 0.00 31.61 2.10
2536 2592 8.247562 TCAAACTTGAATAATTGAATAACGGGG 58.752 33.333 0.00 0.00 33.55 5.73
2537 2593 7.712204 AACTTGAATAATTGAATAACGGGGT 57.288 32.000 0.00 0.00 0.00 4.95
2539 2595 8.990163 ACTTGAATAATTGAATAACGGGGTAT 57.010 30.769 0.00 0.00 0.00 2.73
2544 2600 9.275398 GAATAATTGAATAACGGGGTATGTGTA 57.725 33.333 0.00 0.00 0.00 2.90
2549 2605 2.994186 AACGGGGTATGTGTATCACC 57.006 50.000 0.00 0.00 32.73 4.02
2561 2617 2.169352 GTGTATCACCTGATGCAGAGGT 59.831 50.000 13.37 13.37 45.38 3.85
2563 2619 4.030216 TGTATCACCTGATGCAGAGGTTA 58.970 43.478 15.97 10.11 41.31 2.85
2564 2620 3.834489 ATCACCTGATGCAGAGGTTAG 57.166 47.619 15.97 7.79 41.31 2.34
2567 2623 1.207791 CCTGATGCAGAGGTTAGGGT 58.792 55.000 6.42 0.00 32.44 4.34
2571 2627 4.082125 CTGATGCAGAGGTTAGGGTTTTT 58.918 43.478 0.00 0.00 32.44 1.94
2572 2628 5.249780 TGATGCAGAGGTTAGGGTTTTTA 57.750 39.130 0.00 0.00 0.00 1.52
2574 2630 3.758425 TGCAGAGGTTAGGGTTTTTACC 58.242 45.455 0.00 0.00 0.00 2.85
2575 2631 3.396611 TGCAGAGGTTAGGGTTTTTACCT 59.603 43.478 0.00 0.00 43.48 3.08
2581 2637 6.034442 AGGTTAGGGTTTTTACCTCCTTTT 57.966 37.500 0.00 0.00 36.25 2.27
2582 2638 6.073314 AGGTTAGGGTTTTTACCTCCTTTTC 58.927 40.000 0.00 0.00 36.25 2.29
2583 2639 5.834742 GGTTAGGGTTTTTACCTCCTTTTCA 59.165 40.000 0.00 0.00 39.54 2.69
2584 2640 6.324512 GGTTAGGGTTTTTACCTCCTTTTCAA 59.675 38.462 0.00 0.00 39.54 2.69
2585 2641 7.147689 GGTTAGGGTTTTTACCTCCTTTTCAAA 60.148 37.037 0.00 0.00 39.54 2.69
2586 2642 6.229936 AGGGTTTTTACCTCCTTTTCAAAC 57.770 37.500 0.00 0.00 31.01 2.93
2587 2643 5.722441 AGGGTTTTTACCTCCTTTTCAAACA 59.278 36.000 0.00 0.00 31.01 2.83
2588 2644 5.813672 GGGTTTTTACCTCCTTTTCAAACAC 59.186 40.000 0.00 0.00 0.00 3.32
2589 2645 6.399743 GGTTTTTACCTCCTTTTCAAACACA 58.600 36.000 0.00 0.00 0.00 3.72
2590 2646 7.045416 GGTTTTTACCTCCTTTTCAAACACAT 58.955 34.615 0.00 0.00 0.00 3.21
2591 2647 8.198778 GGTTTTTACCTCCTTTTCAAACACATA 58.801 33.333 0.00 0.00 0.00 2.29
2592 2648 9.758651 GTTTTTACCTCCTTTTCAAACACATAT 57.241 29.630 0.00 0.00 0.00 1.78
2593 2649 9.974980 TTTTTACCTCCTTTTCAAACACATATC 57.025 29.630 0.00 0.00 0.00 1.63
2594 2650 8.698973 TTTACCTCCTTTTCAAACACATATCA 57.301 30.769 0.00 0.00 0.00 2.15
2595 2651 6.575162 ACCTCCTTTTCAAACACATATCAC 57.425 37.500 0.00 0.00 0.00 3.06
2596 2652 6.068010 ACCTCCTTTTCAAACACATATCACA 58.932 36.000 0.00 0.00 0.00 3.58
2597 2653 6.207417 ACCTCCTTTTCAAACACATATCACAG 59.793 38.462 0.00 0.00 0.00 3.66
2598 2654 6.349611 CCTCCTTTTCAAACACATATCACAGG 60.350 42.308 0.00 0.00 0.00 4.00
2599 2655 6.303054 TCCTTTTCAAACACATATCACAGGA 58.697 36.000 0.00 0.00 0.00 3.86
2600 2656 6.775142 TCCTTTTCAAACACATATCACAGGAA 59.225 34.615 0.00 0.00 0.00 3.36
2601 2657 6.863126 CCTTTTCAAACACATATCACAGGAAC 59.137 38.462 0.00 0.00 0.00 3.62
2602 2658 5.957842 TTCAAACACATATCACAGGAACC 57.042 39.130 0.00 0.00 0.00 3.62
2603 2659 5.241403 TCAAACACATATCACAGGAACCT 57.759 39.130 0.00 0.00 0.00 3.50
2604 2660 6.367374 TCAAACACATATCACAGGAACCTA 57.633 37.500 0.00 0.00 0.00 3.08
2605 2661 6.957631 TCAAACACATATCACAGGAACCTAT 58.042 36.000 0.00 0.00 0.00 2.57
2606 2662 6.823182 TCAAACACATATCACAGGAACCTATG 59.177 38.462 0.00 0.00 0.00 2.23
2607 2663 6.560003 AACACATATCACAGGAACCTATGA 57.440 37.500 4.27 4.27 33.73 2.15
2608 2664 6.560003 ACACATATCACAGGAACCTATGAA 57.440 37.500 5.92 0.00 32.88 2.57
2609 2665 7.141758 ACACATATCACAGGAACCTATGAAT 57.858 36.000 5.92 0.00 32.88 2.57
2610 2666 7.220030 ACACATATCACAGGAACCTATGAATC 58.780 38.462 5.92 0.00 32.88 2.52
2611 2667 7.147497 ACACATATCACAGGAACCTATGAATCA 60.147 37.037 5.92 0.00 32.88 2.57
2612 2668 7.716560 CACATATCACAGGAACCTATGAATCAA 59.283 37.037 5.92 0.00 32.88 2.57
2613 2669 7.935755 ACATATCACAGGAACCTATGAATCAAG 59.064 37.037 5.92 0.00 32.88 3.02
2614 2670 6.566079 ATCACAGGAACCTATGAATCAAGA 57.434 37.500 5.92 0.00 32.88 3.02
2615 2671 6.373005 TCACAGGAACCTATGAATCAAGAA 57.627 37.500 0.00 0.00 0.00 2.52
2616 2672 6.962182 TCACAGGAACCTATGAATCAAGAAT 58.038 36.000 0.00 0.00 0.00 2.40
2617 2673 7.405292 TCACAGGAACCTATGAATCAAGAATT 58.595 34.615 0.00 0.00 0.00 2.17
2618 2674 8.548025 TCACAGGAACCTATGAATCAAGAATTA 58.452 33.333 0.00 0.00 0.00 1.40
2619 2675 8.616076 CACAGGAACCTATGAATCAAGAATTAC 58.384 37.037 0.00 0.00 0.00 1.89
2620 2676 8.552296 ACAGGAACCTATGAATCAAGAATTACT 58.448 33.333 0.00 0.00 0.00 2.24
2621 2677 9.050601 CAGGAACCTATGAATCAAGAATTACTC 57.949 37.037 0.00 0.00 0.00 2.59
2622 2678 8.772250 AGGAACCTATGAATCAAGAATTACTCA 58.228 33.333 0.00 0.00 0.00 3.41
2623 2679 9.566432 GGAACCTATGAATCAAGAATTACTCAT 57.434 33.333 0.00 0.00 0.00 2.90
2625 2681 9.911788 AACCTATGAATCAAGAATTACTCATGT 57.088 29.630 0.00 0.00 0.00 3.21
2666 2722 9.545611 CATTAAAATTGCCAAGTTAATTTCTGC 57.454 29.630 6.29 0.00 35.94 4.26
2667 2723 8.668510 TTAAAATTGCCAAGTTAATTTCTGCA 57.331 26.923 0.00 1.63 35.94 4.41
2668 2724 7.748691 AAAATTGCCAAGTTAATTTCTGCAT 57.251 28.000 5.59 0.00 35.94 3.96
2669 2725 6.973229 AATTGCCAAGTTAATTTCTGCATC 57.027 33.333 5.59 0.00 0.00 3.91
2670 2726 5.465532 TTGCCAAGTTAATTTCTGCATCA 57.534 34.783 5.59 0.00 0.00 3.07
2671 2727 4.808558 TGCCAAGTTAATTTCTGCATCAC 58.191 39.130 0.00 0.00 0.00 3.06
2672 2728 3.853671 GCCAAGTTAATTTCTGCATCACG 59.146 43.478 0.00 0.00 0.00 4.35
2673 2729 3.853671 CCAAGTTAATTTCTGCATCACGC 59.146 43.478 0.00 0.00 42.89 5.34
2674 2730 3.389687 AGTTAATTTCTGCATCACGCG 57.610 42.857 3.53 3.53 46.97 6.01
2675 2731 2.742053 AGTTAATTTCTGCATCACGCGT 59.258 40.909 5.58 5.58 46.97 6.01
2676 2732 3.930229 AGTTAATTTCTGCATCACGCGTA 59.070 39.130 13.44 0.28 46.97 4.42
2677 2733 4.032900 AGTTAATTTCTGCATCACGCGTAG 59.967 41.667 13.44 5.33 46.97 3.51
2678 2734 2.293677 ATTTCTGCATCACGCGTAGA 57.706 45.000 13.44 12.86 46.97 2.59
2679 2735 2.293677 TTTCTGCATCACGCGTAGAT 57.706 45.000 13.44 14.72 46.97 1.98
2680 2736 1.559831 TTCTGCATCACGCGTAGATG 58.440 50.000 30.39 30.39 46.97 2.90
2681 2737 0.455815 TCTGCATCACGCGTAGATGT 59.544 50.000 32.36 13.16 46.97 3.06
2682 2738 1.135112 TCTGCATCACGCGTAGATGTT 60.135 47.619 32.36 11.27 46.97 2.71
2683 2739 1.256376 CTGCATCACGCGTAGATGTTC 59.744 52.381 32.36 23.94 46.97 3.18
2684 2740 1.277326 GCATCACGCGTAGATGTTCA 58.723 50.000 32.36 9.47 43.66 3.18
2685 2741 1.860950 GCATCACGCGTAGATGTTCAT 59.139 47.619 32.36 11.58 43.66 2.57
2686 2742 2.347939 GCATCACGCGTAGATGTTCATG 60.348 50.000 32.36 19.69 43.66 3.07
2687 2743 2.931512 TCACGCGTAGATGTTCATGA 57.068 45.000 13.44 0.00 0.00 3.07
2688 2744 3.436700 TCACGCGTAGATGTTCATGAT 57.563 42.857 13.44 0.00 0.00 2.45
2689 2745 3.780902 TCACGCGTAGATGTTCATGATT 58.219 40.909 13.44 0.00 0.00 2.57
2690 2746 3.796717 TCACGCGTAGATGTTCATGATTC 59.203 43.478 13.44 0.00 0.00 2.52
2691 2747 3.798878 CACGCGTAGATGTTCATGATTCT 59.201 43.478 13.44 2.47 0.00 2.40
2692 2748 4.268644 CACGCGTAGATGTTCATGATTCTT 59.731 41.667 13.44 0.00 0.00 2.52
2693 2749 4.870426 ACGCGTAGATGTTCATGATTCTTT 59.130 37.500 11.67 0.00 0.00 2.52
2694 2750 6.019881 CACGCGTAGATGTTCATGATTCTTTA 60.020 38.462 13.44 0.00 0.00 1.85
2695 2751 6.533723 ACGCGTAGATGTTCATGATTCTTTAA 59.466 34.615 11.67 0.00 0.00 1.52
2696 2752 7.224753 ACGCGTAGATGTTCATGATTCTTTAAT 59.775 33.333 11.67 0.00 0.00 1.40
2697 2753 8.699749 CGCGTAGATGTTCATGATTCTTTAATA 58.300 33.333 0.00 0.00 0.00 0.98
2702 2758 9.412460 AGATGTTCATGATTCTTTAATAAGGCA 57.588 29.630 0.00 0.00 32.02 4.75
2706 2762 9.173939 GTTCATGATTCTTTAATAAGGCATTCG 57.826 33.333 0.00 0.00 32.02 3.34
2707 2763 7.362662 TCATGATTCTTTAATAAGGCATTCGC 58.637 34.615 0.00 0.00 37.44 4.70
2719 2775 2.159467 GCATTCGCCAGTAGAAAACG 57.841 50.000 0.00 0.00 0.00 3.60
2720 2776 1.202031 GCATTCGCCAGTAGAAAACGG 60.202 52.381 0.00 0.00 0.00 4.44
2721 2777 1.396996 CATTCGCCAGTAGAAAACGGG 59.603 52.381 0.00 0.00 45.49 5.28
2725 2781 3.644861 CCAGTAGAAAACGGGCCTT 57.355 52.632 0.84 0.00 36.60 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.488812 TGCAGTCACAGTAACCCACTT 59.511 47.619 0.00 0.00 34.26 3.16
1 2 1.128200 TGCAGTCACAGTAACCCACT 58.872 50.000 0.00 0.00 38.32 4.00
2 3 1.961793 TTGCAGTCACAGTAACCCAC 58.038 50.000 0.00 0.00 0.00 4.61
3 4 2.719531 TTTGCAGTCACAGTAACCCA 57.280 45.000 0.00 0.00 0.00 4.51
4 5 4.575885 TCTATTTGCAGTCACAGTAACCC 58.424 43.478 0.00 0.00 0.00 4.11
5 6 8.438676 AATATCTATTTGCAGTCACAGTAACC 57.561 34.615 0.00 0.00 0.00 2.85
6 7 9.319143 AGAATATCTATTTGCAGTCACAGTAAC 57.681 33.333 0.00 0.00 0.00 2.50
7 8 9.890629 AAGAATATCTATTTGCAGTCACAGTAA 57.109 29.630 0.00 0.00 0.00 2.24
8 9 9.534565 GAAGAATATCTATTTGCAGTCACAGTA 57.465 33.333 0.00 0.00 0.00 2.74
9 10 7.497249 GGAAGAATATCTATTTGCAGTCACAGT 59.503 37.037 0.00 0.00 0.00 3.55
10 11 7.496920 TGGAAGAATATCTATTTGCAGTCACAG 59.503 37.037 0.00 0.00 0.00 3.66
11 12 7.337938 TGGAAGAATATCTATTTGCAGTCACA 58.662 34.615 0.00 0.00 0.00 3.58
12 13 7.792374 TGGAAGAATATCTATTTGCAGTCAC 57.208 36.000 0.00 0.00 0.00 3.67
13 14 7.446319 CCATGGAAGAATATCTATTTGCAGTCA 59.554 37.037 5.56 0.00 0.00 3.41
14 15 7.094463 CCCATGGAAGAATATCTATTTGCAGTC 60.094 40.741 15.22 0.00 0.00 3.51
15 16 6.718454 CCCATGGAAGAATATCTATTTGCAGT 59.282 38.462 15.22 0.00 0.00 4.40
16 17 6.152323 CCCCATGGAAGAATATCTATTTGCAG 59.848 42.308 15.22 0.00 0.00 4.41
17 18 6.012113 CCCCATGGAAGAATATCTATTTGCA 58.988 40.000 15.22 0.00 0.00 4.08
18 19 6.248433 TCCCCATGGAAGAATATCTATTTGC 58.752 40.000 15.22 0.00 37.86 3.68
19 20 8.890410 AATCCCCATGGAAGAATATCTATTTG 57.110 34.615 15.22 0.00 45.98 2.32
20 21 9.903190 AAAATCCCCATGGAAGAATATCTATTT 57.097 29.630 15.22 2.75 45.98 1.40
21 22 9.903190 AAAAATCCCCATGGAAGAATATCTATT 57.097 29.630 15.22 0.00 45.98 1.73
77 78 0.672401 TGGACGAAGCGGATGGAAAC 60.672 55.000 0.00 0.00 0.00 2.78
78 79 0.251916 ATGGACGAAGCGGATGGAAA 59.748 50.000 0.00 0.00 0.00 3.13
79 80 0.461870 CATGGACGAAGCGGATGGAA 60.462 55.000 0.00 0.00 0.00 3.53
80 81 1.143838 CATGGACGAAGCGGATGGA 59.856 57.895 0.00 0.00 0.00 3.41
81 82 1.153369 ACATGGACGAAGCGGATGG 60.153 57.895 0.00 0.00 0.00 3.51
82 83 1.482621 CGACATGGACGAAGCGGATG 61.483 60.000 8.49 0.00 0.00 3.51
83 84 1.226974 CGACATGGACGAAGCGGAT 60.227 57.895 8.49 0.00 0.00 4.18
84 85 2.180769 CGACATGGACGAAGCGGA 59.819 61.111 8.49 0.00 0.00 5.54
85 86 2.158959 GTCGACATGGACGAAGCGG 61.159 63.158 11.55 0.00 41.31 5.52
86 87 3.374330 GTCGACATGGACGAAGCG 58.626 61.111 11.55 0.00 41.31 4.68
92 93 0.242825 TTCAGGACGTCGACATGGAC 59.757 55.000 17.16 0.00 0.00 4.02
93 94 0.526211 CTTCAGGACGTCGACATGGA 59.474 55.000 17.16 0.00 0.00 3.41
94 95 0.243907 ACTTCAGGACGTCGACATGG 59.756 55.000 17.16 1.48 0.00 3.66
95 96 1.068541 TGACTTCAGGACGTCGACATG 60.069 52.381 17.16 8.42 32.93 3.21
96 97 1.244816 TGACTTCAGGACGTCGACAT 58.755 50.000 17.16 0.00 32.93 3.06
97 98 1.026584 TTGACTTCAGGACGTCGACA 58.973 50.000 17.16 0.00 32.93 4.35
98 99 1.406447 GTTGACTTCAGGACGTCGAC 58.594 55.000 9.92 5.18 37.38 4.20
99 100 0.313043 GGTTGACTTCAGGACGTCGA 59.687 55.000 9.92 0.00 32.93 4.20
100 101 1.002250 CGGTTGACTTCAGGACGTCG 61.002 60.000 9.92 0.00 32.93 5.12
101 102 1.282930 GCGGTTGACTTCAGGACGTC 61.283 60.000 7.13 7.13 0.00 4.34
102 103 1.300697 GCGGTTGACTTCAGGACGT 60.301 57.895 0.00 0.00 0.00 4.34
103 104 1.284982 CTGCGGTTGACTTCAGGACG 61.285 60.000 0.00 0.00 0.00 4.79
104 105 0.033504 TCTGCGGTTGACTTCAGGAC 59.966 55.000 0.00 0.00 0.00 3.85
105 106 0.033504 GTCTGCGGTTGACTTCAGGA 59.966 55.000 0.00 0.00 0.00 3.86
106 107 0.951040 GGTCTGCGGTTGACTTCAGG 60.951 60.000 0.00 0.00 35.04 3.86
107 108 0.249868 TGGTCTGCGGTTGACTTCAG 60.250 55.000 0.00 0.00 35.04 3.02
108 109 0.249868 CTGGTCTGCGGTTGACTTCA 60.250 55.000 0.00 0.00 35.04 3.02
109 110 1.569479 GCTGGTCTGCGGTTGACTTC 61.569 60.000 0.00 0.00 35.04 3.01
110 111 1.598130 GCTGGTCTGCGGTTGACTT 60.598 57.895 0.00 0.00 35.04 3.01
111 112 2.031163 GCTGGTCTGCGGTTGACT 59.969 61.111 0.00 0.00 35.04 3.41
112 113 2.280797 TGCTGGTCTGCGGTTGAC 60.281 61.111 0.00 0.00 35.36 3.18
113 114 2.031012 CTGCTGGTCTGCGGTTGA 59.969 61.111 0.00 0.00 34.82 3.18
114 115 2.031012 TCTGCTGGTCTGCGGTTG 59.969 61.111 8.20 0.00 40.06 3.77
115 116 2.031163 GTCTGCTGGTCTGCGGTT 59.969 61.111 8.20 0.00 40.06 4.44
116 117 4.008933 GGTCTGCTGGTCTGCGGT 62.009 66.667 8.20 0.00 40.06 5.68
117 118 3.245668 AAGGTCTGCTGGTCTGCGG 62.246 63.158 2.77 2.77 40.46 5.69
118 119 2.031516 CAAGGTCTGCTGGTCTGCG 61.032 63.158 0.00 0.00 35.36 5.18
119 120 0.250467 TTCAAGGTCTGCTGGTCTGC 60.250 55.000 0.00 0.00 0.00 4.26
120 121 1.610102 CCTTCAAGGTCTGCTGGTCTG 60.610 57.143 0.00 0.00 0.00 3.51
121 122 0.689623 CCTTCAAGGTCTGCTGGTCT 59.310 55.000 0.00 0.00 0.00 3.85
122 123 0.957888 GCCTTCAAGGTCTGCTGGTC 60.958 60.000 5.03 0.00 37.80 4.02
123 124 1.073897 GCCTTCAAGGTCTGCTGGT 59.926 57.895 5.03 0.00 37.80 4.00
124 125 2.037136 CGCCTTCAAGGTCTGCTGG 61.037 63.158 5.03 0.00 37.80 4.85
125 126 0.037326 TACGCCTTCAAGGTCTGCTG 60.037 55.000 5.03 0.00 37.80 4.41
126 127 0.247736 CTACGCCTTCAAGGTCTGCT 59.752 55.000 5.03 0.00 37.80 4.24
127 128 0.037232 ACTACGCCTTCAAGGTCTGC 60.037 55.000 5.03 0.00 37.80 4.26
128 129 2.457366 AACTACGCCTTCAAGGTCTG 57.543 50.000 5.03 0.00 37.80 3.51
129 130 2.367567 TGAAACTACGCCTTCAAGGTCT 59.632 45.455 5.03 0.00 37.80 3.85
130 131 2.762745 TGAAACTACGCCTTCAAGGTC 58.237 47.619 5.03 0.00 37.80 3.85
131 132 2.922740 TGAAACTACGCCTTCAAGGT 57.077 45.000 5.03 0.00 37.80 3.50
132 133 3.074412 ACATGAAACTACGCCTTCAAGG 58.926 45.455 0.00 0.00 35.31 3.61
133 134 3.745975 TGACATGAAACTACGCCTTCAAG 59.254 43.478 0.00 0.00 35.31 3.02
134 135 3.734463 TGACATGAAACTACGCCTTCAA 58.266 40.909 0.00 0.00 35.31 2.69
135 136 3.394674 TGACATGAAACTACGCCTTCA 57.605 42.857 0.00 0.00 36.08 3.02
136 137 3.309954 GGATGACATGAAACTACGCCTTC 59.690 47.826 0.00 0.00 0.00 3.46
137 138 3.270877 GGATGACATGAAACTACGCCTT 58.729 45.455 0.00 0.00 0.00 4.35
138 139 2.420129 GGGATGACATGAAACTACGCCT 60.420 50.000 0.00 0.00 0.00 5.52
139 140 1.940613 GGGATGACATGAAACTACGCC 59.059 52.381 0.00 0.00 0.00 5.68
140 141 2.351726 GTGGGATGACATGAAACTACGC 59.648 50.000 0.00 0.00 0.00 4.42
141 142 3.595173 TGTGGGATGACATGAAACTACG 58.405 45.455 0.00 0.00 0.00 3.51
142 143 5.431765 AGATGTGGGATGACATGAAACTAC 58.568 41.667 0.00 0.00 36.67 2.73
143 144 5.698741 AGATGTGGGATGACATGAAACTA 57.301 39.130 0.00 0.00 36.67 2.24
144 145 4.581309 AGATGTGGGATGACATGAAACT 57.419 40.909 0.00 0.00 36.67 2.66
145 146 4.576463 GGTAGATGTGGGATGACATGAAAC 59.424 45.833 0.00 0.00 36.67 2.78
146 147 4.385199 GGGTAGATGTGGGATGACATGAAA 60.385 45.833 0.00 0.00 36.67 2.69
147 148 3.136443 GGGTAGATGTGGGATGACATGAA 59.864 47.826 0.00 0.00 36.67 2.57
148 149 2.705658 GGGTAGATGTGGGATGACATGA 59.294 50.000 0.00 0.00 36.67 3.07
149 150 2.439135 TGGGTAGATGTGGGATGACATG 59.561 50.000 0.00 0.00 36.67 3.21
150 151 2.439507 GTGGGTAGATGTGGGATGACAT 59.560 50.000 0.00 0.00 39.34 3.06
151 152 1.837439 GTGGGTAGATGTGGGATGACA 59.163 52.381 0.00 0.00 0.00 3.58
152 153 1.202533 CGTGGGTAGATGTGGGATGAC 60.203 57.143 0.00 0.00 0.00 3.06
153 154 1.119684 CGTGGGTAGATGTGGGATGA 58.880 55.000 0.00 0.00 0.00 2.92
154 155 1.119684 TCGTGGGTAGATGTGGGATG 58.880 55.000 0.00 0.00 0.00 3.51
155 156 1.971357 GATCGTGGGTAGATGTGGGAT 59.029 52.381 0.00 0.00 0.00 3.85
156 157 1.063190 AGATCGTGGGTAGATGTGGGA 60.063 52.381 0.00 0.00 0.00 4.37
157 158 1.414158 AGATCGTGGGTAGATGTGGG 58.586 55.000 0.00 0.00 0.00 4.61
158 159 3.223435 ACTAGATCGTGGGTAGATGTGG 58.777 50.000 0.00 0.00 0.00 4.17
159 160 3.058846 CGACTAGATCGTGGGTAGATGTG 60.059 52.174 0.00 0.00 46.25 3.21
160 161 3.139850 CGACTAGATCGTGGGTAGATGT 58.860 50.000 0.00 0.00 46.25 3.06
161 162 3.815337 CGACTAGATCGTGGGTAGATG 57.185 52.381 0.00 0.00 46.25 2.90
172 173 0.523966 CTGGGATCGCCGACTAGATC 59.476 60.000 7.38 0.00 41.73 2.75
173 174 0.896019 CCTGGGATCGCCGACTAGAT 60.896 60.000 7.38 0.00 33.83 1.98
174 175 1.528542 CCTGGGATCGCCGACTAGA 60.529 63.158 7.38 0.00 33.83 2.43
175 176 1.797211 GACCTGGGATCGCCGACTAG 61.797 65.000 7.38 0.00 33.83 2.57
176 177 1.826921 GACCTGGGATCGCCGACTA 60.827 63.158 7.38 0.00 33.83 2.59
177 178 3.148279 GACCTGGGATCGCCGACT 61.148 66.667 7.38 0.00 33.83 4.18
178 179 2.907897 CTTGACCTGGGATCGCCGAC 62.908 65.000 7.38 0.00 33.83 4.79
179 180 2.682136 TTGACCTGGGATCGCCGA 60.682 61.111 7.38 0.00 33.83 5.54
180 181 2.202932 CTTGACCTGGGATCGCCG 60.203 66.667 7.38 0.26 33.83 6.46
181 182 2.190578 CCTTGACCTGGGATCGCC 59.809 66.667 7.38 0.12 0.00 5.54
187 188 2.347490 CACGTCCCTTGACCTGGG 59.653 66.667 0.00 0.00 45.90 4.45
188 189 2.347490 CCACGTCCCTTGACCTGG 59.653 66.667 0.00 0.00 40.00 4.45
189 190 2.358737 GCCACGTCCCTTGACCTG 60.359 66.667 0.00 0.00 38.32 4.00
190 191 4.003788 CGCCACGTCCCTTGACCT 62.004 66.667 0.00 0.00 38.32 3.85
191 192 3.819877 AACGCCACGTCCCTTGACC 62.820 63.158 0.00 0.00 39.99 4.02
192 193 2.280592 AACGCCACGTCCCTTGAC 60.281 61.111 0.00 0.00 39.99 3.18
193 194 2.280524 CAACGCCACGTCCCTTGA 60.281 61.111 0.00 0.00 39.99 3.02
194 195 2.113131 GAACAACGCCACGTCCCTTG 62.113 60.000 0.00 0.00 39.99 3.61
195 196 1.890510 GAACAACGCCACGTCCCTT 60.891 57.895 0.00 0.00 39.99 3.95
196 197 2.280592 GAACAACGCCACGTCCCT 60.281 61.111 0.00 0.00 39.99 4.20
197 198 3.351416 GGAACAACGCCACGTCCC 61.351 66.667 0.00 0.00 39.99 4.46
198 199 3.351416 GGGAACAACGCCACGTCC 61.351 66.667 0.00 0.00 39.99 4.79
199 200 2.280592 AGGGAACAACGCCACGTC 60.281 61.111 0.00 0.00 39.99 4.34
200 201 2.590575 CAGGGAACAACGCCACGT 60.591 61.111 0.00 0.00 43.97 4.49
201 202 3.353836 CCAGGGAACAACGCCACG 61.354 66.667 0.00 0.00 0.00 4.94
202 203 1.792118 GAACCAGGGAACAACGCCAC 61.792 60.000 0.00 0.00 0.00 5.01
203 204 1.527380 GAACCAGGGAACAACGCCA 60.527 57.895 0.00 0.00 0.00 5.69
204 205 1.228154 AGAACCAGGGAACAACGCC 60.228 57.895 0.00 0.00 0.00 5.68
205 206 1.515521 CCAGAACCAGGGAACAACGC 61.516 60.000 0.00 0.00 0.00 4.84
206 207 1.515521 GCCAGAACCAGGGAACAACG 61.516 60.000 0.00 0.00 0.00 4.10
207 208 0.178990 AGCCAGAACCAGGGAACAAC 60.179 55.000 0.00 0.00 0.00 3.32
208 209 1.073284 GTAGCCAGAACCAGGGAACAA 59.927 52.381 0.00 0.00 0.00 2.83
209 210 0.690762 GTAGCCAGAACCAGGGAACA 59.309 55.000 0.00 0.00 0.00 3.18
210 211 0.690762 TGTAGCCAGAACCAGGGAAC 59.309 55.000 0.00 0.00 0.00 3.62
211 212 1.440618 TTGTAGCCAGAACCAGGGAA 58.559 50.000 0.00 0.00 0.00 3.97
212 213 1.281867 CATTGTAGCCAGAACCAGGGA 59.718 52.381 0.00 0.00 0.00 4.20
213 214 1.683011 CCATTGTAGCCAGAACCAGGG 60.683 57.143 0.00 0.00 0.00 4.45
214 215 1.004745 ACCATTGTAGCCAGAACCAGG 59.995 52.381 0.00 0.00 0.00 4.45
215 216 2.026822 AGACCATTGTAGCCAGAACCAG 60.027 50.000 0.00 0.00 0.00 4.00
216 217 1.985159 AGACCATTGTAGCCAGAACCA 59.015 47.619 0.00 0.00 0.00 3.67
217 218 2.789409 AGACCATTGTAGCCAGAACC 57.211 50.000 0.00 0.00 0.00 3.62
218 219 4.473477 AGTAGACCATTGTAGCCAGAAC 57.527 45.455 0.00 0.00 0.00 3.01
219 220 5.499004 AAAGTAGACCATTGTAGCCAGAA 57.501 39.130 0.00 0.00 0.00 3.02
220 221 5.720041 ACTAAAGTAGACCATTGTAGCCAGA 59.280 40.000 0.00 0.00 0.00 3.86
221 222 5.978814 ACTAAAGTAGACCATTGTAGCCAG 58.021 41.667 0.00 0.00 0.00 4.85
222 223 6.014070 TGAACTAAAGTAGACCATTGTAGCCA 60.014 38.462 0.00 0.00 0.00 4.75
223 224 6.403878 TGAACTAAAGTAGACCATTGTAGCC 58.596 40.000 0.00 0.00 0.00 3.93
224 225 9.250624 CTATGAACTAAAGTAGACCATTGTAGC 57.749 37.037 0.00 0.00 0.00 3.58
225 226 9.751542 CCTATGAACTAAAGTAGACCATTGTAG 57.248 37.037 0.00 0.00 0.00 2.74
226 227 9.263446 ACCTATGAACTAAAGTAGACCATTGTA 57.737 33.333 0.00 0.00 0.00 2.41
227 228 8.147244 ACCTATGAACTAAAGTAGACCATTGT 57.853 34.615 0.00 0.00 0.00 2.71
231 232 9.537852 TCTTAACCTATGAACTAAAGTAGACCA 57.462 33.333 0.00 0.00 0.00 4.02
249 250 9.807921 TTTCTGTTCCTTTGATATTCTTAACCT 57.192 29.630 0.00 0.00 0.00 3.50
260 261 9.889128 TTTCTTTGATTTTTCTGTTCCTTTGAT 57.111 25.926 0.00 0.00 0.00 2.57
261 262 9.717942 TTTTCTTTGATTTTTCTGTTCCTTTGA 57.282 25.926 0.00 0.00 0.00 2.69
264 265 9.889128 TCATTTTCTTTGATTTTTCTGTTCCTT 57.111 25.926 0.00 0.00 0.00 3.36
265 266 9.889128 TTCATTTTCTTTGATTTTTCTGTTCCT 57.111 25.926 0.00 0.00 0.00 3.36
327 328 6.332630 ACTTCAACACTATGCATTAAATGGC 58.667 36.000 3.54 0.00 0.00 4.40
343 344 8.439971 AGATGGGCTATGATTTATACTTCAACA 58.560 33.333 0.00 0.00 0.00 3.33
358 359 8.908786 TTTATGTAGAGAAAAGATGGGCTATG 57.091 34.615 0.00 0.00 0.00 2.23
359 360 9.920946 TTTTTATGTAGAGAAAAGATGGGCTAT 57.079 29.630 0.00 0.00 0.00 2.97
440 449 7.277981 GGATTCCTATTTGTATGCAGTATACGG 59.722 40.741 4.40 0.00 43.78 4.02
442 451 9.672673 ATGGATTCCTATTTGTATGCAGTATAC 57.327 33.333 3.95 1.79 41.68 1.47
447 456 7.756395 AGAATGGATTCCTATTTGTATGCAG 57.244 36.000 3.95 0.00 37.51 4.41
518 527 9.053472 TCCTTTGGTTTGTAGGAATTCTATAGA 57.947 33.333 5.23 0.00 35.20 1.98
558 567 6.126409 TCATAGCCAGATTCCCGTAATTTTT 58.874 36.000 0.00 0.00 0.00 1.94
559 568 5.690865 TCATAGCCAGATTCCCGTAATTTT 58.309 37.500 0.00 0.00 0.00 1.82
560 569 5.304686 TCATAGCCAGATTCCCGTAATTT 57.695 39.130 0.00 0.00 0.00 1.82
561 570 4.974645 TCATAGCCAGATTCCCGTAATT 57.025 40.909 0.00 0.00 0.00 1.40
562 571 4.532126 TCATCATAGCCAGATTCCCGTAAT 59.468 41.667 0.00 0.00 0.00 1.89
565 574 2.329267 TCATCATAGCCAGATTCCCGT 58.671 47.619 0.00 0.00 0.00 5.28
566 575 3.623906 ATCATCATAGCCAGATTCCCG 57.376 47.619 0.00 0.00 0.00 5.14
568 577 6.002704 AGTCAAATCATCATAGCCAGATTCC 58.997 40.000 0.00 0.00 30.87 3.01
571 580 7.877097 GTCTAAGTCAAATCATCATAGCCAGAT 59.123 37.037 0.00 0.00 0.00 2.90
572 581 7.070447 AGTCTAAGTCAAATCATCATAGCCAGA 59.930 37.037 0.00 0.00 0.00 3.86
573 582 7.215789 AGTCTAAGTCAAATCATCATAGCCAG 58.784 38.462 0.00 0.00 0.00 4.85
580 598 7.328493 CACGTGTAAGTCTAAGTCAAATCATCA 59.672 37.037 7.58 0.00 0.00 3.07
581 599 7.328737 ACACGTGTAAGTCTAAGTCAAATCATC 59.671 37.037 21.98 0.00 0.00 2.92
604 622 7.903431 CGTGTAATTAGATTAGGAAAGCAACAC 59.097 37.037 0.00 0.00 0.00 3.32
631 652 9.326413 CAATTAGTAGTTGGGTCTAAGTATTGG 57.674 37.037 0.00 0.00 0.00 3.16
685 707 3.551485 GTGAGCGCATTGTTCAACTTTTT 59.449 39.130 11.47 0.00 39.69 1.94
759 787 7.512992 AGCATAATTAATGTAGAGGCAGTTCT 58.487 34.615 0.00 0.00 37.93 3.01
811 840 0.605319 GGTGCGGTCTTGGTGATCAA 60.605 55.000 0.00 0.00 0.00 2.57
814 843 2.063015 TTGGGTGCGGTCTTGGTGAT 62.063 55.000 0.00 0.00 0.00 3.06
839 868 1.448985 ATTGCCGTGTAGCGTGAAAT 58.551 45.000 0.00 0.00 39.32 2.17
865 894 8.055181 AGCTATTGTCTTCCTTTAAATGGATGA 58.945 33.333 13.48 13.48 36.03 2.92
879 908 5.078411 TCAGGTTCTGAGCTATTGTCTTC 57.922 43.478 0.00 0.00 35.39 2.87
912 942 7.978975 TGTAGAGGAAATTGTTTTGGTTTTCAG 59.021 33.333 0.00 0.00 31.29 3.02
927 957 4.287067 TGGTTCTGAGCTTGTAGAGGAAAT 59.713 41.667 0.00 0.00 0.00 2.17
956 990 5.325239 ACTAAAGGGGATGAACCAAGAAAG 58.675 41.667 0.00 0.00 41.20 2.62
996 1034 2.303022 AGAAAGAACCGCTTCCATCTCA 59.697 45.455 0.00 0.00 35.24 3.27
1035 1073 6.147821 TCAGAAAGGAGAAAAATCTGCTAACG 59.852 38.462 0.14 0.00 37.43 3.18
1067 1105 1.759445 AGCATGTGAGAGCCGAGTATT 59.241 47.619 0.00 0.00 0.00 1.89
1077 1115 0.041684 TCTCCCCTGAGCATGTGAGA 59.958 55.000 0.00 0.00 38.58 3.27
1091 1129 1.091771 CACATCCACATGCGTCTCCC 61.092 60.000 0.00 0.00 32.57 4.30
1129 1167 6.096141 TCAACAACCATTTGAGCTCTTAACAA 59.904 34.615 16.19 0.00 36.48 2.83
1230 1268 3.639538 AGTGTCTAGCGCATAATAACCG 58.360 45.455 11.47 0.00 0.00 4.44
1370 1408 6.356190 GTCGCACTTGTTATAAACTTTGTGAC 59.644 38.462 12.57 12.57 37.86 3.67
1424 1462 5.730550 ACTCTGTGATATTAGAAACGGCAA 58.269 37.500 0.00 0.00 0.00 4.52
1497 1535 9.733556 ATGAAGTTGTTGATGTAAAGGTATGTA 57.266 29.630 0.00 0.00 0.00 2.29
1557 1595 6.463995 TGGAAGCATTGTAACAAGAAGTTT 57.536 33.333 0.00 0.00 41.64 2.66
1573 1611 1.339055 CGGAGAACCAAGATGGAAGCA 60.339 52.381 2.85 0.00 40.96 3.91
1677 1715 9.822185 ATTAAAGTGCAAAATTGAAGAGAAGTT 57.178 25.926 0.00 0.00 0.00 2.66
1774 1813 6.542735 CCACTTCTCATCATCAACATCTGAAT 59.457 38.462 0.00 0.00 37.67 2.57
1805 1844 3.763360 TGGATGTCATTGCCTGGTAAAAG 59.237 43.478 0.16 0.00 0.00 2.27
1876 1915 4.290093 TGGCTTCACAGTACCATATCTCT 58.710 43.478 0.00 0.00 0.00 3.10
1965 2004 1.906824 GGTGGTCCTCACTCCGTGA 60.907 63.158 0.00 0.00 45.38 4.35
1970 2009 0.765510 ACTTTGGGTGGTCCTCACTC 59.234 55.000 0.00 0.00 46.86 3.51
1994 2033 0.250467 TGAACTCTCCTGCCAACAGC 60.250 55.000 0.00 0.00 43.02 4.40
2159 2198 3.936902 TGTCTTTCGAAACGGTTTGAG 57.063 42.857 11.43 5.18 0.00 3.02
2163 2202 4.998672 TGGATAATGTCTTTCGAAACGGTT 59.001 37.500 6.47 2.82 0.00 4.44
2172 2211 6.035112 GTGAAGTCGACTGGATAATGTCTTTC 59.965 42.308 20.85 8.43 0.00 2.62
2200 2239 0.523519 CAGCGGGAGAAGGAAAAAGC 59.476 55.000 0.00 0.00 0.00 3.51
2230 2271 2.820178 TCAGTCAGAGGAGGCATAACA 58.180 47.619 0.00 0.00 0.00 2.41
2231 2272 3.791245 CTTCAGTCAGAGGAGGCATAAC 58.209 50.000 0.00 0.00 0.00 1.89
2244 2285 1.270305 CGGAAACCTCAGCTTCAGTCA 60.270 52.381 0.00 0.00 0.00 3.41
2314 2355 3.441500 AAGTCACCCTTGGGAAGAATC 57.558 47.619 13.39 0.06 30.18 2.52
2315 2356 3.117131 ACAAAGTCACCCTTGGGAAGAAT 60.117 43.478 13.39 6.39 32.32 2.40
2319 2360 4.463050 AATACAAAGTCACCCTTGGGAA 57.537 40.909 13.39 0.00 32.32 3.97
2375 2416 4.062991 GACGGAACATGGTAACTGAACTT 58.937 43.478 0.00 0.00 37.61 2.66
2425 2466 1.677217 GCTTCACGCTTCCTCCTCAAT 60.677 52.381 0.00 0.00 35.14 2.57
2480 2536 7.341445 AGAATTTGCTACTACACCAAACAAA 57.659 32.000 0.00 0.00 32.02 2.83
2532 2588 2.036387 TCAGGTGATACACATACCCCG 58.964 52.381 0.00 0.00 35.86 5.73
2536 2592 4.948847 TCTGCATCAGGTGATACACATAC 58.051 43.478 0.00 0.00 35.86 2.39
2537 2593 4.039609 CCTCTGCATCAGGTGATACACATA 59.960 45.833 3.99 0.00 35.86 2.29
2539 2595 2.169144 CCTCTGCATCAGGTGATACACA 59.831 50.000 3.99 0.00 35.86 3.72
2544 2600 2.437281 CCTAACCTCTGCATCAGGTGAT 59.563 50.000 16.39 6.39 44.03 3.06
2549 2605 3.356529 AAACCCTAACCTCTGCATCAG 57.643 47.619 0.00 0.00 0.00 2.90
2561 2617 7.399478 TGTTTGAAAAGGAGGTAAAAACCCTAA 59.601 33.333 0.00 0.00 30.60 2.69
2563 2619 5.722441 TGTTTGAAAAGGAGGTAAAAACCCT 59.278 36.000 0.00 0.00 34.11 4.34
2564 2620 5.813672 GTGTTTGAAAAGGAGGTAAAAACCC 59.186 40.000 0.00 0.00 0.00 4.11
2567 2623 9.974980 GATATGTGTTTGAAAAGGAGGTAAAAA 57.025 29.630 0.00 0.00 0.00 1.94
2571 2627 7.227873 TGTGATATGTGTTTGAAAAGGAGGTA 58.772 34.615 0.00 0.00 0.00 3.08
2572 2628 6.068010 TGTGATATGTGTTTGAAAAGGAGGT 58.932 36.000 0.00 0.00 0.00 3.85
2574 2630 6.430925 TCCTGTGATATGTGTTTGAAAAGGAG 59.569 38.462 0.00 0.00 0.00 3.69
2575 2631 6.303054 TCCTGTGATATGTGTTTGAAAAGGA 58.697 36.000 0.00 0.00 0.00 3.36
2577 2633 6.863126 GGTTCCTGTGATATGTGTTTGAAAAG 59.137 38.462 0.00 0.00 0.00 2.27
2578 2634 6.549364 AGGTTCCTGTGATATGTGTTTGAAAA 59.451 34.615 0.00 0.00 0.00 2.29
2581 2637 5.241403 AGGTTCCTGTGATATGTGTTTGA 57.759 39.130 0.00 0.00 0.00 2.69
2582 2638 6.823182 TCATAGGTTCCTGTGATATGTGTTTG 59.177 38.462 12.99 0.00 31.03 2.93
2583 2639 6.957631 TCATAGGTTCCTGTGATATGTGTTT 58.042 36.000 12.99 0.00 31.03 2.83
2584 2640 6.560003 TCATAGGTTCCTGTGATATGTGTT 57.440 37.500 12.99 0.00 31.03 3.32
2585 2641 6.560003 TTCATAGGTTCCTGTGATATGTGT 57.440 37.500 16.66 0.00 34.92 3.72
2586 2642 7.219322 TGATTCATAGGTTCCTGTGATATGTG 58.781 38.462 16.66 0.00 34.92 3.21
2587 2643 7.379059 TGATTCATAGGTTCCTGTGATATGT 57.621 36.000 16.66 6.22 34.92 2.29
2588 2644 8.152898 TCTTGATTCATAGGTTCCTGTGATATG 58.847 37.037 16.66 5.85 34.92 1.78
2589 2645 8.267620 TCTTGATTCATAGGTTCCTGTGATAT 57.732 34.615 16.66 13.06 34.92 1.63
2590 2646 7.675161 TCTTGATTCATAGGTTCCTGTGATA 57.325 36.000 16.66 9.77 34.92 2.15
2591 2647 6.566079 TCTTGATTCATAGGTTCCTGTGAT 57.434 37.500 16.66 8.86 34.92 3.06
2592 2648 6.373005 TTCTTGATTCATAGGTTCCTGTGA 57.627 37.500 12.99 12.99 33.48 3.58
2593 2649 7.636150 AATTCTTGATTCATAGGTTCCTGTG 57.364 36.000 8.92 8.92 0.00 3.66
2594 2650 8.552296 AGTAATTCTTGATTCATAGGTTCCTGT 58.448 33.333 1.12 0.00 0.00 4.00
2595 2651 8.970859 AGTAATTCTTGATTCATAGGTTCCTG 57.029 34.615 1.12 0.00 0.00 3.86
2596 2652 8.772250 TGAGTAATTCTTGATTCATAGGTTCCT 58.228 33.333 0.00 0.00 0.00 3.36
2597 2653 8.964476 TGAGTAATTCTTGATTCATAGGTTCC 57.036 34.615 0.00 0.00 0.00 3.62
2599 2655 9.911788 ACATGAGTAATTCTTGATTCATAGGTT 57.088 29.630 0.00 0.00 35.51 3.50
2640 2696 9.545611 GCAGAAATTAACTTGGCAATTTTAATG 57.454 29.630 19.67 13.45 35.14 1.90
2641 2697 9.282569 TGCAGAAATTAACTTGGCAATTTTAAT 57.717 25.926 15.88 15.88 35.14 1.40
2642 2698 8.668510 TGCAGAAATTAACTTGGCAATTTTAA 57.331 26.923 8.17 11.36 35.14 1.52
2643 2699 8.845413 ATGCAGAAATTAACTTGGCAATTTTA 57.155 26.923 8.17 0.00 35.14 1.52
2644 2700 7.444792 TGATGCAGAAATTAACTTGGCAATTTT 59.555 29.630 8.17 4.01 35.14 1.82
2645 2701 6.935771 TGATGCAGAAATTAACTTGGCAATTT 59.064 30.769 7.97 7.97 37.12 1.82
2646 2702 6.369615 GTGATGCAGAAATTAACTTGGCAATT 59.630 34.615 0.00 0.00 33.09 2.32
2647 2703 5.870978 GTGATGCAGAAATTAACTTGGCAAT 59.129 36.000 0.00 0.00 33.09 3.56
2648 2704 5.229423 GTGATGCAGAAATTAACTTGGCAA 58.771 37.500 0.00 0.00 33.09 4.52
2649 2705 4.615682 CGTGATGCAGAAATTAACTTGGCA 60.616 41.667 0.00 0.00 0.00 4.92
2650 2706 3.853671 CGTGATGCAGAAATTAACTTGGC 59.146 43.478 0.00 0.00 0.00 4.52
2651 2707 3.853671 GCGTGATGCAGAAATTAACTTGG 59.146 43.478 0.00 0.00 45.45 3.61
2652 2708 3.539563 CGCGTGATGCAGAAATTAACTTG 59.460 43.478 0.00 0.00 46.97 3.16
2653 2709 3.188460 ACGCGTGATGCAGAAATTAACTT 59.812 39.130 12.93 0.00 46.97 2.66
2654 2710 2.742053 ACGCGTGATGCAGAAATTAACT 59.258 40.909 12.93 0.00 46.97 2.24
2655 2711 3.117434 ACGCGTGATGCAGAAATTAAC 57.883 42.857 12.93 0.00 46.97 2.01
2656 2712 4.177783 TCTACGCGTGATGCAGAAATTAA 58.822 39.130 24.59 0.00 46.97 1.40
2657 2713 3.776340 TCTACGCGTGATGCAGAAATTA 58.224 40.909 24.59 0.00 46.97 1.40
2658 2714 2.616960 TCTACGCGTGATGCAGAAATT 58.383 42.857 24.59 0.00 46.97 1.82
2659 2715 2.293677 TCTACGCGTGATGCAGAAAT 57.706 45.000 24.59 0.00 46.97 2.17
2660 2716 1.926510 CATCTACGCGTGATGCAGAAA 59.073 47.619 26.77 5.73 46.97 2.52
2661 2717 1.135112 ACATCTACGCGTGATGCAGAA 60.135 47.619 32.48 11.52 46.97 3.02
2662 2718 0.455815 ACATCTACGCGTGATGCAGA 59.544 50.000 32.48 24.19 46.97 4.26
2663 2719 1.256376 GAACATCTACGCGTGATGCAG 59.744 52.381 32.48 20.64 46.97 4.41
2664 2720 1.277326 GAACATCTACGCGTGATGCA 58.723 50.000 32.48 13.39 46.97 3.96
2665 2721 1.277326 TGAACATCTACGCGTGATGC 58.723 50.000 32.48 23.80 43.53 3.91
2666 2722 3.115554 TCATGAACATCTACGCGTGATG 58.884 45.455 31.66 31.66 44.79 3.07
2667 2723 3.436700 TCATGAACATCTACGCGTGAT 57.563 42.857 24.59 18.99 0.00 3.06
2668 2724 2.931512 TCATGAACATCTACGCGTGA 57.068 45.000 24.59 17.50 0.00 4.35
2669 2725 3.798878 AGAATCATGAACATCTACGCGTG 59.201 43.478 24.59 12.26 0.00 5.34
2670 2726 4.046938 AGAATCATGAACATCTACGCGT 57.953 40.909 19.17 19.17 0.00 6.01
2671 2727 5.395325 AAAGAATCATGAACATCTACGCG 57.605 39.130 3.53 3.53 0.00 6.01
2676 2732 9.412460 TGCCTTATTAAAGAATCATGAACATCT 57.588 29.630 0.00 1.09 34.37 2.90
2680 2736 9.173939 CGAATGCCTTATTAAAGAATCATGAAC 57.826 33.333 0.00 0.00 34.37 3.18
2681 2737 7.862372 GCGAATGCCTTATTAAAGAATCATGAA 59.138 33.333 0.00 0.00 34.37 2.57
2682 2738 7.362662 GCGAATGCCTTATTAAAGAATCATGA 58.637 34.615 0.00 0.00 34.37 3.07
2683 2739 7.558435 GCGAATGCCTTATTAAAGAATCATG 57.442 36.000 0.00 0.00 34.37 3.07
2700 2756 1.202031 CCGTTTTCTACTGGCGAATGC 60.202 52.381 0.00 0.00 41.71 3.56
2701 2757 1.396996 CCCGTTTTCTACTGGCGAATG 59.603 52.381 0.00 0.00 0.00 2.67
2702 2758 1.734163 CCCGTTTTCTACTGGCGAAT 58.266 50.000 0.00 0.00 0.00 3.34
2703 2759 0.952010 GCCCGTTTTCTACTGGCGAA 60.952 55.000 0.00 0.00 45.43 4.70
2704 2760 1.375013 GCCCGTTTTCTACTGGCGA 60.375 57.895 0.00 0.00 45.43 5.54
2705 2761 3.174788 GCCCGTTTTCTACTGGCG 58.825 61.111 0.00 0.00 45.43 5.69
2707 2763 3.644861 AAGGCCCGTTTTCTACTGG 57.355 52.632 0.00 0.00 34.47 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.