Multiple sequence alignment - TraesCS3D01G030200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G030200 chr3D 100.000 3478 0 0 1 3478 11024906 11028383 0.000000e+00 6423.0
1 TraesCS3D01G030200 chr3D 76.639 244 31 14 3104 3324 592807780 592808020 1.020000e-20 111.0
2 TraesCS3D01G030200 chrUn 93.909 1576 57 13 923 2488 32426050 32424504 0.000000e+00 2342.0
3 TraesCS3D01G030200 chrUn 93.857 1579 58 13 920 2488 288680569 288682118 0.000000e+00 2342.0
4 TraesCS3D01G030200 chrUn 89.316 936 63 14 1 929 32426890 32425985 0.000000e+00 1140.0
5 TraesCS3D01G030200 chrUn 89.316 936 63 14 1 929 288679732 288680637 0.000000e+00 1140.0
6 TraesCS3D01G030200 chrUn 92.211 796 48 6 930 1720 381101193 381101979 0.000000e+00 1114.0
7 TraesCS3D01G030200 chrUn 90.415 386 20 6 1743 2119 381102231 381102608 3.120000e-135 492.0
8 TraesCS3D01G030200 chrUn 90.099 101 3 3 33 126 476477067 476477167 1.310000e-24 124.0
9 TraesCS3D01G030200 chr3B 93.204 824 38 7 1743 2556 73076583 73077398 0.000000e+00 1195.0
10 TraesCS3D01G030200 chr3B 92.840 824 41 7 1743 2556 73113671 73114486 0.000000e+00 1179.0
11 TraesCS3D01G030200 chr3B 92.920 791 47 5 930 1720 73112638 73113419 0.000000e+00 1142.0
12 TraesCS3D01G030200 chr3B 92.211 796 48 6 930 1720 73075545 73076331 0.000000e+00 1114.0
13 TraesCS3D01G030200 chr3B 88.022 359 15 13 33 382 73111643 73111982 1.940000e-107 399.0
14 TraesCS3D01G030200 chr3B 87.187 359 18 13 33 382 73074550 73074889 1.960000e-102 383.0
15 TraesCS3D01G030200 chr3B 79.259 135 21 6 3081 3213 448229009 448228880 1.720000e-13 87.9
16 TraesCS3D01G030200 chr3B 94.872 39 2 0 619 657 73075205 73075243 1.040000e-05 62.1
17 TraesCS3D01G030200 chr3B 94.872 39 2 0 619 657 73112298 73112336 1.040000e-05 62.1
18 TraesCS3D01G030200 chr7B 92.529 696 46 2 1794 2483 353630646 353631341 0.000000e+00 992.0
19 TraesCS3D01G030200 chr7B 86.926 719 64 7 992 1710 353629673 353630361 0.000000e+00 780.0
20 TraesCS3D01G030200 chr7B 92.857 168 10 1 2552 2717 328512158 328511991 3.470000e-60 243.0
21 TraesCS3D01G030200 chr7D 92.407 698 43 5 1794 2483 351767282 351766587 0.000000e+00 987.0
22 TraesCS3D01G030200 chr7D 86.872 716 64 7 995 1710 351768240 351767555 0.000000e+00 774.0
23 TraesCS3D01G030200 chr7D 92.353 170 12 1 2555 2723 593193273 593193104 1.250000e-59 241.0
24 TraesCS3D01G030200 chr7D 91.908 173 10 3 2553 2723 201883585 201883415 4.490000e-59 239.0
25 TraesCS3D01G030200 chr7D 78.947 209 29 10 3006 3207 29309984 29310184 1.010000e-25 128.0
26 TraesCS3D01G030200 chr7A 91.799 695 51 1 1794 2482 399933448 399932754 0.000000e+00 963.0
27 TraesCS3D01G030200 chr7A 91.351 370 32 0 1341 1710 399934130 399933761 1.110000e-139 507.0
28 TraesCS3D01G030200 chr7A 91.597 119 10 0 1211 1329 399934230 399934112 7.720000e-37 165.0
29 TraesCS3D01G030200 chr6D 92.814 167 10 1 2553 2717 307340870 307341036 1.250000e-59 241.0
30 TraesCS3D01G030200 chr6D 91.429 175 12 2 2552 2724 389700538 389700711 1.610000e-58 237.0
31 TraesCS3D01G030200 chr6D 88.601 193 15 5 2532 2719 206560250 206560440 9.710000e-56 228.0
32 TraesCS3D01G030200 chr6D 84.874 119 17 1 2320 2438 430243180 430243063 6.100000e-23 119.0
33 TraesCS3D01G030200 chr6D 85.088 114 15 2 2320 2432 84676969 84676857 7.890000e-22 115.0
34 TraesCS3D01G030200 chr6B 90.659 182 13 2 2540 2719 211161656 211161477 4.490000e-59 239.0
35 TraesCS3D01G030200 chr6B 81.343 134 18 6 3080 3208 77150041 77150172 6.140000e-18 102.0
36 TraesCS3D01G030200 chr4D 90.909 176 15 1 2545 2719 413012025 413012200 5.800000e-58 235.0
37 TraesCS3D01G030200 chr1B 90.857 175 15 1 2546 2719 28563388 28563562 2.090000e-57 233.0
38 TraesCS3D01G030200 chr5B 73.163 626 97 42 2746 3338 10099606 10099019 3.590000e-35 159.0
39 TraesCS3D01G030200 chr1D 81.915 94 13 2 3103 3196 220918626 220918537 3.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G030200 chr3D 11024906 11028383 3477 False 6423.000 6423 100.000000 1 3478 1 chr3D.!!$F1 3477
1 TraesCS3D01G030200 chrUn 32424504 32426890 2386 True 1741.000 2342 91.612500 1 2488 2 chrUn.!!$R1 2487
2 TraesCS3D01G030200 chrUn 288679732 288682118 2386 False 1741.000 2342 91.586500 1 2488 2 chrUn.!!$F2 2487
3 TraesCS3D01G030200 chrUn 381101193 381102608 1415 False 803.000 1114 91.313000 930 2119 2 chrUn.!!$F3 1189
4 TraesCS3D01G030200 chr3B 73111643 73114486 2843 False 695.525 1179 92.163500 33 2556 4 chr3B.!!$F2 2523
5 TraesCS3D01G030200 chr3B 73074550 73077398 2848 False 688.525 1195 91.868500 33 2556 4 chr3B.!!$F1 2523
6 TraesCS3D01G030200 chr7B 353629673 353631341 1668 False 886.000 992 89.727500 992 2483 2 chr7B.!!$F1 1491
7 TraesCS3D01G030200 chr7D 351766587 351768240 1653 True 880.500 987 89.639500 995 2483 2 chr7D.!!$R3 1488
8 TraesCS3D01G030200 chr7A 399932754 399934230 1476 True 545.000 963 91.582333 1211 2482 3 chr7A.!!$R1 1271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 1090 0.319083 CGCCCACCACCGCTATAATA 59.681 55.0 0.0 0.0 0.0 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2758 3299 0.028242 TTTAGGTTGCAACGCACGTG 59.972 50.0 22.67 12.28 38.71 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.479560 GCGCGCCCATTTCTCTATTTTT 60.480 45.455 23.24 0.00 0.00 1.94
162 169 4.991056 GCGTCATTCCATCTAGAAGCATTA 59.009 41.667 0.00 0.00 35.91 1.90
163 170 5.119898 GCGTCATTCCATCTAGAAGCATTAG 59.880 44.000 0.00 0.00 35.91 1.73
164 171 6.450545 CGTCATTCCATCTAGAAGCATTAGA 58.549 40.000 0.00 0.00 0.00 2.10
167 174 6.933521 TCATTCCATCTAGAAGCATTAGAAGC 59.066 38.462 0.00 0.00 31.41 3.86
168 175 5.876651 TCCATCTAGAAGCATTAGAAGCA 57.123 39.130 0.00 0.00 31.41 3.91
169 176 6.430962 TCCATCTAGAAGCATTAGAAGCAT 57.569 37.500 0.00 0.00 31.41 3.79
170 177 6.835174 TCCATCTAGAAGCATTAGAAGCATT 58.165 36.000 0.00 0.00 31.41 3.56
328 335 4.971924 AGCTGGTATCTACTCCCTTCATTT 59.028 41.667 0.00 0.00 0.00 2.32
333 340 8.195165 TGGTATCTACTCCCTTCATTTCATAG 57.805 38.462 0.00 0.00 0.00 2.23
338 345 8.441311 TCTACTCCCTTCATTTCATAGCATAT 57.559 34.615 0.00 0.00 0.00 1.78
359 366 4.775440 TGACCGTGTAGTGTTAAAAACG 57.225 40.909 0.00 0.00 0.00 3.60
411 528 7.038154 GCCATTTTATAGAAGTGTTGGCATA 57.962 36.000 11.55 0.00 45.93 3.14
422 539 4.848357 AGTGTTGGCATAACATAAGAGCT 58.152 39.130 8.71 0.00 32.23 4.09
464 581 8.758633 AGTAGTACGTGGATTATATCATTTGC 57.241 34.615 0.00 0.00 0.00 3.68
468 585 9.890629 AGTACGTGGATTATATCATTTGCATAT 57.109 29.630 0.00 0.00 0.00 1.78
556 677 3.205338 CTGATCACAGTCCACAAACACA 58.795 45.455 0.00 0.00 39.11 3.72
570 691 0.319727 AACACATCCGGACGCGTTTA 60.320 50.000 15.53 0.00 0.00 2.01
576 697 2.735478 CGGACGCGTTTACTGGCA 60.735 61.111 15.53 0.00 0.00 4.92
599 720 3.474798 TGAGGGGTCAGATCTACTGTT 57.525 47.619 0.00 0.00 45.86 3.16
601 722 2.359531 GAGGGGTCAGATCTACTGTTCG 59.640 54.545 0.00 0.00 45.86 3.95
617 738 1.667154 TTCGCGGCTGTAGATGCTCT 61.667 55.000 6.13 0.00 0.00 4.09
618 739 1.659954 CGCGGCTGTAGATGCTCTC 60.660 63.158 0.00 0.00 0.00 3.20
707 916 1.144057 CTCGGTGGGTGGCTATGTC 59.856 63.158 0.00 0.00 0.00 3.06
727 946 2.569853 TCAGGATGTGTTTACACCCGAT 59.430 45.455 10.28 0.00 45.88 4.18
728 947 3.770388 TCAGGATGTGTTTACACCCGATA 59.230 43.478 10.28 0.00 45.88 2.92
729 948 3.869246 CAGGATGTGTTTACACCCGATAC 59.131 47.826 10.28 0.00 45.88 2.24
730 949 2.861935 GGATGTGTTTACACCCGATACG 59.138 50.000 10.28 0.00 45.88 3.06
733 952 4.095410 TGTGTTTACACCCGATACGTAG 57.905 45.455 10.28 0.00 45.88 3.51
762 988 3.496131 CACCGCACCACCGCATAC 61.496 66.667 0.00 0.00 0.00 2.39
824 1057 1.140312 TCCAGCTTCCTTCCTTGTGT 58.860 50.000 0.00 0.00 0.00 3.72
825 1058 1.494721 TCCAGCTTCCTTCCTTGTGTT 59.505 47.619 0.00 0.00 0.00 3.32
855 1088 2.300850 GACGCCCACCACCGCTATAA 62.301 60.000 0.00 0.00 0.00 0.98
856 1089 1.070786 CGCCCACCACCGCTATAAT 59.929 57.895 0.00 0.00 0.00 1.28
857 1090 0.319083 CGCCCACCACCGCTATAATA 59.681 55.000 0.00 0.00 0.00 0.98
892 1125 6.513393 CGCATCTAACAATCTTTTCATACCCC 60.513 42.308 0.00 0.00 0.00 4.95
935 1168 2.797156 CAGTAAGTGCGGTGCATCTATC 59.203 50.000 0.00 0.00 41.91 2.08
939 1172 2.031870 AGTGCGGTGCATCTATCAGTA 58.968 47.619 0.00 0.00 41.91 2.74
956 1189 2.168728 CAGTAGTTTCCTACCCCTCTGC 59.831 54.545 0.00 0.00 43.92 4.26
966 1199 3.847602 CCCTCTGCCTCTCCAGCG 61.848 72.222 0.00 0.00 32.87 5.18
1149 1382 4.947147 TTGTGGGTCGTGCTGCCC 62.947 66.667 0.00 0.00 45.04 5.36
1245 1478 2.126812 GTCGAGCGACTCAAGCGT 60.127 61.111 15.13 0.00 41.57 5.07
1303 1536 0.535335 GGGGACGCTTGAGTATGTGA 59.465 55.000 0.00 0.00 0.00 3.58
1650 1888 4.796231 AGCCGCGACGTCATCCAC 62.796 66.667 17.16 0.27 0.00 4.02
1752 2283 2.571757 CGAAGCGAGCCCTGTGTA 59.428 61.111 0.00 0.00 0.00 2.90
1765 2296 3.812882 GCCCTGTGTATTGTTTACCAGGT 60.813 47.826 0.00 0.00 35.75 4.00
1767 2298 5.562635 CCCTGTGTATTGTTTACCAGGTAA 58.437 41.667 8.09 8.09 35.75 2.85
1768 2299 6.005198 CCCTGTGTATTGTTTACCAGGTAAA 58.995 40.000 19.40 19.40 35.92 2.01
1769 2300 6.150474 CCCTGTGTATTGTTTACCAGGTAAAG 59.850 42.308 23.08 9.44 38.44 1.85
1784 2315 6.207417 ACCAGGTAAAGAAAGACATTGACATG 59.793 38.462 0.00 0.00 36.34 3.21
1789 2320 4.978083 AGAAAGACATTGACATGCATCC 57.022 40.909 0.00 0.00 33.05 3.51
1790 2321 4.597004 AGAAAGACATTGACATGCATCCT 58.403 39.130 0.00 0.00 33.05 3.24
1791 2322 4.639310 AGAAAGACATTGACATGCATCCTC 59.361 41.667 0.00 0.00 33.05 3.71
1792 2323 2.558378 AGACATTGACATGCATCCTCG 58.442 47.619 0.00 0.00 33.05 4.63
1829 2360 1.211969 GTACGACTTCAGCCAGCGA 59.788 57.895 0.00 0.00 0.00 4.93
1838 2369 2.178890 CAGCCAGCGATTCCTGCTC 61.179 63.158 0.00 0.00 41.72 4.26
2011 2551 3.894547 TTCGTTCCAAGGGGCTCGC 62.895 63.158 0.00 0.00 32.76 5.03
2433 2973 1.215382 CAAGCCTCCGTGTCGATCA 59.785 57.895 0.00 0.00 0.00 2.92
2488 3028 5.389935 GCATCCTCGGCTAGATAAATTTTCG 60.390 44.000 0.00 0.00 0.00 3.46
2489 3029 4.056050 TCCTCGGCTAGATAAATTTTCGC 58.944 43.478 0.00 0.00 0.00 4.70
2530 3071 3.181490 GCGGTTGGGAATTAATCTGAACC 60.181 47.826 0.00 0.00 36.60 3.62
2539 3080 6.325596 GGAATTAATCTGAACCTGCAAAGTC 58.674 40.000 0.00 0.00 0.00 3.01
2543 3084 1.881973 TCTGAACCTGCAAAGTCATGC 59.118 47.619 0.00 0.00 46.58 4.06
2556 3097 5.447010 GCAAAGTCATGCAGTTGAGATCTAC 60.447 44.000 0.00 0.00 45.70 2.59
2557 3098 5.674052 AAGTCATGCAGTTGAGATCTACT 57.326 39.130 0.00 0.00 32.36 2.57
2558 3099 5.261209 AGTCATGCAGTTGAGATCTACTC 57.739 43.478 0.00 0.00 45.11 2.59
2559 3100 4.099266 AGTCATGCAGTTGAGATCTACTCC 59.901 45.833 0.00 0.00 44.34 3.85
2560 3101 3.386078 TCATGCAGTTGAGATCTACTCCC 59.614 47.826 0.00 0.00 44.34 4.30
2561 3102 3.107402 TGCAGTTGAGATCTACTCCCT 57.893 47.619 0.00 0.00 44.34 4.20
2562 3103 3.027412 TGCAGTTGAGATCTACTCCCTC 58.973 50.000 0.00 0.00 44.34 4.30
2563 3104 2.034053 GCAGTTGAGATCTACTCCCTCG 59.966 54.545 0.00 0.00 44.34 4.63
2564 3105 2.621055 CAGTTGAGATCTACTCCCTCGG 59.379 54.545 0.00 0.00 44.34 4.63
2565 3106 2.242708 AGTTGAGATCTACTCCCTCGGT 59.757 50.000 0.00 0.00 44.34 4.69
2566 3107 3.025262 GTTGAGATCTACTCCCTCGGTT 58.975 50.000 0.00 0.00 44.34 4.44
2567 3108 2.933573 TGAGATCTACTCCCTCGGTTC 58.066 52.381 0.00 0.00 44.34 3.62
2568 3109 2.232399 GAGATCTACTCCCTCGGTTCC 58.768 57.143 0.00 0.00 39.53 3.62
2569 3110 1.854280 AGATCTACTCCCTCGGTTCCT 59.146 52.381 0.00 0.00 0.00 3.36
2570 3111 3.054576 AGATCTACTCCCTCGGTTCCTA 58.945 50.000 0.00 0.00 0.00 2.94
2571 3112 3.462579 AGATCTACTCCCTCGGTTCCTAA 59.537 47.826 0.00 0.00 0.00 2.69
2572 3113 3.744940 TCTACTCCCTCGGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2573 3114 4.261411 TCTACTCCCTCGGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2574 3115 5.393068 TCTACTCCCTCGGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2575 3116 5.961897 TCTACTCCCTCGGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2576 3117 6.379579 TCTACTCCCTCGGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
2577 3118 5.970501 ACTCCCTCGGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2578 3119 5.681639 ACTCCCTCGGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2579 3120 5.191124 ACTCCCTCGGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2580 3121 5.677567 TCCCTCGGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2581 3122 5.427481 TCCCTCGGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2582 3123 6.069847 TCCCTCGGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2583 3124 6.602009 CCCTCGGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2584 3125 7.122204 CCCTCGGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2585 3126 8.520351 CCTCGGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2612 3153 8.804743 AGATATTTCAACAAATGACTACGTACG 58.195 33.333 15.01 15.01 37.92 3.67
2613 3154 5.579384 TTTCAACAAATGACTACGTACGG 57.421 39.130 21.06 5.00 37.92 4.02
2614 3155 4.502171 TCAACAAATGACTACGTACGGA 57.498 40.909 21.06 10.81 31.50 4.69
2615 3156 4.478699 TCAACAAATGACTACGTACGGAG 58.521 43.478 25.90 25.90 31.50 4.63
2616 3157 2.872370 ACAAATGACTACGTACGGAGC 58.128 47.619 27.33 19.29 0.00 4.70
2617 3158 2.229543 ACAAATGACTACGTACGGAGCA 59.770 45.455 27.33 23.90 0.00 4.26
2618 3159 3.247442 CAAATGACTACGTACGGAGCAA 58.753 45.455 27.33 15.92 0.00 3.91
2619 3160 3.581024 AATGACTACGTACGGAGCAAA 57.419 42.857 27.33 13.28 0.00 3.68
2620 3161 3.581024 ATGACTACGTACGGAGCAAAA 57.419 42.857 27.33 10.70 0.00 2.44
2621 3162 3.581024 TGACTACGTACGGAGCAAAAT 57.419 42.857 27.33 7.40 0.00 1.82
2622 3163 4.700268 TGACTACGTACGGAGCAAAATA 57.300 40.909 27.33 4.74 0.00 1.40
2623 3164 5.058149 TGACTACGTACGGAGCAAAATAA 57.942 39.130 27.33 0.00 0.00 1.40
2624 3165 5.468592 TGACTACGTACGGAGCAAAATAAA 58.531 37.500 27.33 1.43 0.00 1.40
2625 3166 6.101332 TGACTACGTACGGAGCAAAATAAAT 58.899 36.000 27.33 4.14 0.00 1.40
2626 3167 6.035220 TGACTACGTACGGAGCAAAATAAATG 59.965 38.462 27.33 0.06 0.00 2.32
2627 3168 6.101332 ACTACGTACGGAGCAAAATAAATGA 58.899 36.000 27.33 0.00 0.00 2.57
2628 3169 5.866335 ACGTACGGAGCAAAATAAATGAA 57.134 34.783 21.06 0.00 0.00 2.57
2629 3170 6.431198 ACGTACGGAGCAAAATAAATGAAT 57.569 33.333 21.06 0.00 0.00 2.57
2630 3171 6.483687 ACGTACGGAGCAAAATAAATGAATC 58.516 36.000 21.06 0.00 0.00 2.52
2631 3172 6.315393 ACGTACGGAGCAAAATAAATGAATCT 59.685 34.615 21.06 0.00 0.00 2.40
2632 3173 7.493320 ACGTACGGAGCAAAATAAATGAATCTA 59.507 33.333 21.06 0.00 0.00 1.98
2633 3174 7.792508 CGTACGGAGCAAAATAAATGAATCTAC 59.207 37.037 7.57 0.00 0.00 2.59
2634 3175 7.624360 ACGGAGCAAAATAAATGAATCTACA 57.376 32.000 0.00 0.00 0.00 2.74
2635 3176 7.472543 ACGGAGCAAAATAAATGAATCTACAC 58.527 34.615 0.00 0.00 0.00 2.90
2636 3177 7.336931 ACGGAGCAAAATAAATGAATCTACACT 59.663 33.333 0.00 0.00 0.00 3.55
2637 3178 7.852945 CGGAGCAAAATAAATGAATCTACACTC 59.147 37.037 0.00 0.00 0.00 3.51
2638 3179 8.897752 GGAGCAAAATAAATGAATCTACACTCT 58.102 33.333 0.00 0.00 0.00 3.24
2678 3219 7.962964 ATATCCGTATGTGTTAGTCCATTTG 57.037 36.000 0.00 0.00 0.00 2.32
2679 3220 5.408880 TCCGTATGTGTTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
2680 3221 5.795972 TCCGTATGTGTTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
2681 3222 6.231951 TCCGTATGTGTTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
2682 3223 6.882140 TCCGTATGTGTTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
2683 3224 7.065324 TCCGTATGTGTTAGTCCATTTGAAATC 59.935 37.037 0.00 0.00 0.00 2.17
2684 3225 7.065803 CCGTATGTGTTAGTCCATTTGAAATCT 59.934 37.037 0.00 0.00 0.00 2.40
2685 3226 9.093970 CGTATGTGTTAGTCCATTTGAAATCTA 57.906 33.333 0.00 0.00 0.00 1.98
2715 3256 9.588096 AGACAAATATTTAAAAACAGAGGGAGT 57.412 29.630 0.00 0.00 0.00 3.85
2721 3262 9.892130 ATATTTAAAAACAGAGGGAGTAGTCTG 57.108 33.333 0.00 0.00 44.92 3.51
2726 3267 3.878160 CAGAGGGAGTAGTCTGTTTCC 57.122 52.381 0.00 0.00 36.27 3.13
2727 3268 3.165875 CAGAGGGAGTAGTCTGTTTCCA 58.834 50.000 0.00 0.00 36.27 3.53
2728 3269 3.578716 CAGAGGGAGTAGTCTGTTTCCAA 59.421 47.826 0.00 0.00 36.27 3.53
2729 3270 3.579151 AGAGGGAGTAGTCTGTTTCCAAC 59.421 47.826 0.00 0.00 0.00 3.77
2730 3271 2.299297 AGGGAGTAGTCTGTTTCCAACG 59.701 50.000 0.00 0.00 0.00 4.10
2731 3272 2.298163 GGGAGTAGTCTGTTTCCAACGA 59.702 50.000 0.00 0.00 0.00 3.85
2732 3273 3.056035 GGGAGTAGTCTGTTTCCAACGAT 60.056 47.826 0.00 0.00 0.00 3.73
2733 3274 4.159135 GGGAGTAGTCTGTTTCCAACGATA 59.841 45.833 0.00 0.00 0.00 2.92
2734 3275 5.163437 GGGAGTAGTCTGTTTCCAACGATAT 60.163 44.000 0.00 0.00 0.00 1.63
2735 3276 6.040166 GGGAGTAGTCTGTTTCCAACGATATA 59.960 42.308 0.00 0.00 0.00 0.86
2736 3277 7.255871 GGGAGTAGTCTGTTTCCAACGATATAT 60.256 40.741 0.00 0.00 0.00 0.86
2737 3278 8.790718 GGAGTAGTCTGTTTCCAACGATATATA 58.209 37.037 0.00 0.00 0.00 0.86
2738 3279 9.828852 GAGTAGTCTGTTTCCAACGATATATAG 57.171 37.037 0.00 0.00 0.00 1.31
2739 3280 9.570468 AGTAGTCTGTTTCCAACGATATATAGA 57.430 33.333 0.00 0.00 0.00 1.98
2740 3281 9.828852 GTAGTCTGTTTCCAACGATATATAGAG 57.171 37.037 0.00 0.00 0.00 2.43
2741 3282 8.466617 AGTCTGTTTCCAACGATATATAGAGT 57.533 34.615 0.00 0.00 0.00 3.24
2742 3283 8.915036 AGTCTGTTTCCAACGATATATAGAGTT 58.085 33.333 0.00 0.00 0.00 3.01
2743 3284 8.969267 GTCTGTTTCCAACGATATATAGAGTTG 58.031 37.037 18.70 18.70 42.37 3.16
2744 3285 8.692710 TCTGTTTCCAACGATATATAGAGTTGT 58.307 33.333 21.53 2.04 41.48 3.32
2745 3286 9.961265 CTGTTTCCAACGATATATAGAGTTGTA 57.039 33.333 21.53 11.00 41.48 2.41
2746 3287 9.740239 TGTTTCCAACGATATATAGAGTTGTAC 57.260 33.333 21.53 17.76 41.48 2.90
2747 3288 9.962783 GTTTCCAACGATATATAGAGTTGTACT 57.037 33.333 21.53 0.00 41.48 2.73
2750 3291 8.944029 TCCAACGATATATAGAGTTGTACTAGC 58.056 37.037 21.53 0.00 41.48 3.42
2751 3292 8.727910 CCAACGATATATAGAGTTGTACTAGCA 58.272 37.037 21.53 0.00 41.48 3.49
2759 3300 5.546621 AGAGTTGTACTAGCAAAAGGACA 57.453 39.130 0.00 0.00 38.59 4.02
2760 3301 5.298347 AGAGTTGTACTAGCAAAAGGACAC 58.702 41.667 0.00 0.00 40.09 3.67
2761 3302 4.056050 AGTTGTACTAGCAAAAGGACACG 58.944 43.478 0.00 0.00 40.09 4.49
2762 3303 3.738830 TGTACTAGCAAAAGGACACGT 57.261 42.857 0.00 0.00 35.33 4.49
2763 3304 3.386486 TGTACTAGCAAAAGGACACGTG 58.614 45.455 15.48 15.48 35.33 4.49
2764 3305 1.226746 ACTAGCAAAAGGACACGTGC 58.773 50.000 17.22 8.51 37.26 5.34
2765 3306 0.163788 CTAGCAAAAGGACACGTGCG 59.836 55.000 17.22 0.00 41.90 5.34
2766 3307 0.531090 TAGCAAAAGGACACGTGCGT 60.531 50.000 17.22 7.41 41.90 5.24
2767 3308 1.063488 GCAAAAGGACACGTGCGTT 59.937 52.632 17.22 13.14 0.00 4.84
2768 3309 1.199852 GCAAAAGGACACGTGCGTTG 61.200 55.000 17.22 13.23 0.00 4.10
2769 3310 1.063488 AAAAGGACACGTGCGTTGC 59.937 52.632 17.22 1.06 0.00 4.17
2770 3311 1.649390 AAAAGGACACGTGCGTTGCA 61.649 50.000 17.22 0.00 35.60 4.08
2771 3312 1.649390 AAAGGACACGTGCGTTGCAA 61.649 50.000 17.22 0.00 41.47 4.08
2772 3313 2.317685 AAGGACACGTGCGTTGCAAC 62.318 55.000 19.89 19.89 41.47 4.17
2773 3314 2.351888 GACACGTGCGTTGCAACC 60.352 61.111 23.42 16.11 41.47 3.77
2774 3315 2.819552 GACACGTGCGTTGCAACCT 61.820 57.895 23.42 0.76 41.47 3.50
2775 3316 1.492319 GACACGTGCGTTGCAACCTA 61.492 55.000 23.42 10.02 41.47 3.08
2776 3317 1.090625 ACACGTGCGTTGCAACCTAA 61.091 50.000 23.42 6.70 41.47 2.69
2777 3318 0.028242 CACGTGCGTTGCAACCTAAA 59.972 50.000 23.42 4.13 41.47 1.85
2778 3319 0.733729 ACGTGCGTTGCAACCTAAAA 59.266 45.000 23.42 2.31 41.47 1.52
2779 3320 1.132643 ACGTGCGTTGCAACCTAAAAA 59.867 42.857 23.42 0.53 41.47 1.94
2804 3345 5.927281 ATATAATCTTCAATGGCCATGGC 57.073 39.130 29.47 29.47 41.06 4.40
2805 3346 2.170012 AATCTTCAATGGCCATGGCT 57.830 45.000 34.70 15.14 41.60 4.75
2806 3347 3.317455 AATCTTCAATGGCCATGGCTA 57.683 42.857 34.70 30.78 41.60 3.93
2807 3348 3.537795 ATCTTCAATGGCCATGGCTAT 57.462 42.857 34.70 31.60 44.16 2.97
2808 3349 4.662966 ATCTTCAATGGCCATGGCTATA 57.337 40.909 33.04 19.13 41.45 1.31
2809 3350 4.662966 TCTTCAATGGCCATGGCTATAT 57.337 40.909 33.04 22.37 41.45 0.86
2810 3351 5.001833 TCTTCAATGGCCATGGCTATATT 57.998 39.130 33.04 26.03 41.45 1.28
2811 3352 5.396485 TCTTCAATGGCCATGGCTATATTT 58.604 37.500 33.04 17.90 41.45 1.40
2812 3353 5.840149 TCTTCAATGGCCATGGCTATATTTT 59.160 36.000 33.04 17.53 41.45 1.82
2813 3354 5.471556 TCAATGGCCATGGCTATATTTTG 57.528 39.130 33.04 26.76 41.45 2.44
2814 3355 3.967332 ATGGCCATGGCTATATTTTGC 57.033 42.857 32.12 14.73 40.52 3.68
2815 3356 2.961510 TGGCCATGGCTATATTTTGCT 58.038 42.857 34.70 0.00 41.60 3.91
2816 3357 2.629137 TGGCCATGGCTATATTTTGCTG 59.371 45.455 34.70 0.00 41.60 4.41
2817 3358 2.611224 GGCCATGGCTATATTTTGCTGC 60.611 50.000 34.70 10.75 41.60 5.25
2818 3359 2.923605 GCCATGGCTATATTTTGCTGCG 60.924 50.000 29.98 0.00 38.26 5.18
2819 3360 2.294233 CCATGGCTATATTTTGCTGCGT 59.706 45.455 0.00 0.00 0.00 5.24
2820 3361 3.558505 CATGGCTATATTTTGCTGCGTC 58.441 45.455 0.00 0.00 0.00 5.19
2821 3362 2.637947 TGGCTATATTTTGCTGCGTCA 58.362 42.857 0.00 0.00 0.00 4.35
2822 3363 2.354510 TGGCTATATTTTGCTGCGTCAC 59.645 45.455 0.00 0.00 0.00 3.67
2823 3364 2.287009 GGCTATATTTTGCTGCGTCACC 60.287 50.000 0.00 0.00 0.00 4.02
2824 3365 2.614057 GCTATATTTTGCTGCGTCACCT 59.386 45.455 0.00 0.00 0.00 4.00
2825 3366 3.807622 GCTATATTTTGCTGCGTCACCTA 59.192 43.478 0.00 0.00 0.00 3.08
2826 3367 4.272504 GCTATATTTTGCTGCGTCACCTAA 59.727 41.667 0.00 0.00 0.00 2.69
2827 3368 5.220777 GCTATATTTTGCTGCGTCACCTAAA 60.221 40.000 0.00 0.00 0.00 1.85
2828 3369 5.835113 ATATTTTGCTGCGTCACCTAAAT 57.165 34.783 0.00 0.00 0.00 1.40
2829 3370 6.935741 ATATTTTGCTGCGTCACCTAAATA 57.064 33.333 0.00 0.00 0.00 1.40
2830 3371 4.413495 TTTTGCTGCGTCACCTAAATAC 57.587 40.909 0.00 0.00 0.00 1.89
2831 3372 2.753055 TGCTGCGTCACCTAAATACA 57.247 45.000 0.00 0.00 0.00 2.29
2832 3373 2.343101 TGCTGCGTCACCTAAATACAC 58.657 47.619 0.00 0.00 0.00 2.90
2833 3374 2.289133 TGCTGCGTCACCTAAATACACA 60.289 45.455 0.00 0.00 0.00 3.72
2834 3375 2.739913 GCTGCGTCACCTAAATACACAA 59.260 45.455 0.00 0.00 0.00 3.33
2835 3376 3.374058 GCTGCGTCACCTAAATACACAAT 59.626 43.478 0.00 0.00 0.00 2.71
2836 3377 4.142687 GCTGCGTCACCTAAATACACAATT 60.143 41.667 0.00 0.00 0.00 2.32
2837 3378 5.064198 GCTGCGTCACCTAAATACACAATTA 59.936 40.000 0.00 0.00 0.00 1.40
2838 3379 6.411630 TGCGTCACCTAAATACACAATTAC 57.588 37.500 0.00 0.00 0.00 1.89
2839 3380 6.167685 TGCGTCACCTAAATACACAATTACT 58.832 36.000 0.00 0.00 0.00 2.24
2840 3381 6.311935 TGCGTCACCTAAATACACAATTACTC 59.688 38.462 0.00 0.00 0.00 2.59
2841 3382 6.534079 GCGTCACCTAAATACACAATTACTCT 59.466 38.462 0.00 0.00 0.00 3.24
2842 3383 7.254017 GCGTCACCTAAATACACAATTACTCTC 60.254 40.741 0.00 0.00 0.00 3.20
2843 3384 7.758076 CGTCACCTAAATACACAATTACTCTCA 59.242 37.037 0.00 0.00 0.00 3.27
2844 3385 9.431887 GTCACCTAAATACACAATTACTCTCAA 57.568 33.333 0.00 0.00 0.00 3.02
2895 3436 8.881743 TGAAATCAAAACAATTTCTGAAACTGG 58.118 29.630 15.05 6.32 41.56 4.00
2896 3437 6.849588 ATCAAAACAATTTCTGAAACTGGC 57.150 33.333 15.05 0.00 0.00 4.85
2897 3438 4.803088 TCAAAACAATTTCTGAAACTGGCG 59.197 37.500 15.05 2.11 0.00 5.69
2898 3439 4.647424 AAACAATTTCTGAAACTGGCGA 57.353 36.364 15.05 0.00 0.00 5.54
2899 3440 4.647424 AACAATTTCTGAAACTGGCGAA 57.353 36.364 15.05 0.00 0.00 4.70
2900 3441 3.964909 ACAATTTCTGAAACTGGCGAAC 58.035 40.909 15.05 0.00 0.00 3.95
2901 3442 3.380004 ACAATTTCTGAAACTGGCGAACA 59.620 39.130 15.05 0.00 0.00 3.18
2902 3443 4.037923 ACAATTTCTGAAACTGGCGAACAT 59.962 37.500 15.05 0.00 0.00 2.71
2903 3444 5.240623 ACAATTTCTGAAACTGGCGAACATA 59.759 36.000 15.05 0.00 0.00 2.29
2904 3445 6.071952 ACAATTTCTGAAACTGGCGAACATAT 60.072 34.615 15.05 0.00 0.00 1.78
2905 3446 5.957842 TTTCTGAAACTGGCGAACATATT 57.042 34.783 0.00 0.00 0.00 1.28
2906 3447 5.957842 TTCTGAAACTGGCGAACATATTT 57.042 34.783 0.00 0.00 0.00 1.40
2907 3448 5.295431 TCTGAAACTGGCGAACATATTTG 57.705 39.130 0.00 0.00 0.00 2.32
2908 3449 5.000591 TCTGAAACTGGCGAACATATTTGA 58.999 37.500 0.00 0.00 0.00 2.69
2909 3450 5.471797 TCTGAAACTGGCGAACATATTTGAA 59.528 36.000 0.00 0.00 0.00 2.69
2910 3451 6.016693 TCTGAAACTGGCGAACATATTTGAAA 60.017 34.615 0.00 0.00 0.00 2.69
2911 3452 6.686630 TGAAACTGGCGAACATATTTGAAAT 58.313 32.000 0.00 0.00 0.00 2.17
2912 3453 6.806249 TGAAACTGGCGAACATATTTGAAATC 59.194 34.615 0.00 0.00 0.00 2.17
2913 3454 5.895636 ACTGGCGAACATATTTGAAATCA 57.104 34.783 0.00 0.00 0.00 2.57
2914 3455 6.455360 ACTGGCGAACATATTTGAAATCAT 57.545 33.333 0.00 0.00 0.00 2.45
2915 3456 6.267817 ACTGGCGAACATATTTGAAATCATG 58.732 36.000 0.00 0.47 0.00 3.07
2916 3457 6.127647 ACTGGCGAACATATTTGAAATCATGT 60.128 34.615 0.00 1.06 33.12 3.21
2917 3458 7.066887 ACTGGCGAACATATTTGAAATCATGTA 59.933 33.333 10.93 0.00 31.55 2.29
2918 3459 7.192913 TGGCGAACATATTTGAAATCATGTAC 58.807 34.615 10.93 0.00 31.55 2.90
2919 3460 7.148171 TGGCGAACATATTTGAAATCATGTACA 60.148 33.333 0.00 0.00 31.55 2.90
2920 3461 7.700234 GGCGAACATATTTGAAATCATGTACAA 59.300 33.333 0.00 0.00 31.55 2.41
2921 3462 9.236691 GCGAACATATTTGAAATCATGTACAAT 57.763 29.630 0.00 0.00 31.55 2.71
3065 3606 9.965824 AAACAATTTTCTAGAATCGTTGAACAT 57.034 25.926 21.83 9.56 0.00 2.71
3066 3607 9.965824 AACAATTTTCTAGAATCGTTGAACATT 57.034 25.926 21.83 10.08 0.00 2.71
3067 3608 9.965824 ACAATTTTCTAGAATCGTTGAACATTT 57.034 25.926 21.83 5.50 0.00 2.32
3072 3613 9.923143 TTTCTAGAATCGTTGAACATTTCTAGA 57.077 29.630 26.49 26.49 46.46 2.43
3076 3617 8.777865 AGAATCGTTGAACATTTCTAGATTCA 57.222 30.769 16.44 2.96 41.33 2.57
3077 3618 9.388506 AGAATCGTTGAACATTTCTAGATTCAT 57.611 29.630 16.44 5.20 41.33 2.57
3078 3619 9.643652 GAATCGTTGAACATTTCTAGATTCATC 57.356 33.333 7.21 6.20 40.21 2.92
3079 3620 8.722480 ATCGTTGAACATTTCTAGATTCATCA 57.278 30.769 7.21 0.82 31.45 3.07
3080 3621 8.546597 TCGTTGAACATTTCTAGATTCATCAA 57.453 30.769 7.21 6.05 31.45 2.57
3081 3622 8.998377 TCGTTGAACATTTCTAGATTCATCAAA 58.002 29.630 7.21 0.00 31.45 2.69
3082 3623 9.055248 CGTTGAACATTTCTAGATTCATCAAAC 57.945 33.333 7.21 3.04 31.45 2.93
3083 3624 9.897744 GTTGAACATTTCTAGATTCATCAAACA 57.102 29.630 7.21 0.00 31.45 2.83
3095 3636 7.923888 AGATTCATCAAACATTTCAGTATCGG 58.076 34.615 0.00 0.00 0.00 4.18
3096 3637 7.770433 AGATTCATCAAACATTTCAGTATCGGA 59.230 33.333 0.00 0.00 0.00 4.55
3097 3638 7.864108 TTCATCAAACATTTCAGTATCGGAT 57.136 32.000 0.00 0.00 0.00 4.18
3098 3639 7.250445 TCATCAAACATTTCAGTATCGGATG 57.750 36.000 0.00 0.00 0.00 3.51
3099 3640 7.047271 TCATCAAACATTTCAGTATCGGATGA 58.953 34.615 0.00 0.00 36.16 2.92
3100 3641 7.716560 TCATCAAACATTTCAGTATCGGATGAT 59.283 33.333 0.00 0.00 34.28 2.45
3101 3642 7.864108 TCAAACATTTCAGTATCGGATGATT 57.136 32.000 0.00 0.00 35.99 2.57
3102 3643 8.279970 TCAAACATTTCAGTATCGGATGATTT 57.720 30.769 0.00 0.00 35.99 2.17
3103 3644 8.739039 TCAAACATTTCAGTATCGGATGATTTT 58.261 29.630 0.00 0.00 35.99 1.82
3104 3645 9.357652 CAAACATTTCAGTATCGGATGATTTTT 57.642 29.630 0.00 0.00 35.99 1.94
3138 3679 7.834068 TTGGTCGAACAATTTTTGAAATTCA 57.166 28.000 12.93 0.00 0.00 2.57
3139 3680 7.227992 TGGTCGAACAATTTTTGAAATTCAC 57.772 32.000 0.00 0.00 0.00 3.18
3140 3681 6.020281 TGGTCGAACAATTTTTGAAATTCACG 60.020 34.615 0.00 0.00 0.00 4.35
3141 3682 6.197468 GGTCGAACAATTTTTGAAATTCACGA 59.803 34.615 0.00 0.00 0.00 4.35
3142 3683 7.253817 GGTCGAACAATTTTTGAAATTCACGAA 60.254 33.333 0.00 0.00 0.00 3.85
3143 3684 7.574128 GTCGAACAATTTTTGAAATTCACGAAC 59.426 33.333 0.00 9.17 0.00 3.95
3144 3685 7.486551 TCGAACAATTTTTGAAATTCACGAACT 59.513 29.630 0.00 0.00 0.00 3.01
3145 3686 8.107564 CGAACAATTTTTGAAATTCACGAACTT 58.892 29.630 0.00 0.00 0.00 2.66
3146 3687 9.753669 GAACAATTTTTGAAATTCACGAACTTT 57.246 25.926 0.00 0.00 0.00 2.66
3267 3808 9.480053 TTTTTGAATTGGCAAAATTTTGTTCAA 57.520 22.222 26.99 26.99 44.45 2.69
3268 3809 9.649167 TTTTGAATTGGCAAAATTTTGTTCAAT 57.351 22.222 29.04 28.75 41.38 2.57
3269 3810 9.649167 TTTGAATTGGCAAAATTTTGTTCAATT 57.351 22.222 34.90 34.90 45.20 2.32
3270 3811 9.649167 TTGAATTGGCAAAATTTTGTTCAATTT 57.351 22.222 34.80 27.29 44.14 1.82
3271 3812 9.298774 TGAATTGGCAAAATTTTGTTCAATTTC 57.701 25.926 34.80 30.10 44.14 2.17
3272 3813 9.298774 GAATTGGCAAAATTTTGTTCAATTTCA 57.701 25.926 34.80 21.26 44.14 2.69
3273 3814 9.819267 AATTGGCAAAATTTTGTTCAATTTCAT 57.181 22.222 32.48 23.12 43.12 2.57
3274 3815 9.819267 ATTGGCAAAATTTTGTTCAATTTCATT 57.181 22.222 28.47 17.64 39.06 2.57
3344 3885 9.643693 TGATTTCCTGAAGATTTTTGAATAAGC 57.356 29.630 0.00 0.00 0.00 3.09
3345 3886 9.643693 GATTTCCTGAAGATTTTTGAATAAGCA 57.356 29.630 0.00 0.00 0.00 3.91
3347 3888 9.829507 TTTCCTGAAGATTTTTGAATAAGCAAA 57.170 25.926 0.00 0.00 36.08 3.68
3348 3889 8.816640 TCCTGAAGATTTTTGAATAAGCAAAC 57.183 30.769 0.00 0.00 37.48 2.93
3349 3890 8.420222 TCCTGAAGATTTTTGAATAAGCAAACA 58.580 29.630 0.00 0.00 37.48 2.83
3350 3891 9.211485 CCTGAAGATTTTTGAATAAGCAAACAT 57.789 29.630 0.00 0.00 37.48 2.71
3367 3908 9.593134 AAGCAAACATTTACTTACAAAATCACA 57.407 25.926 0.00 0.00 0.00 3.58
3368 3909 9.593134 AGCAAACATTTACTTACAAAATCACAA 57.407 25.926 0.00 0.00 0.00 3.33
3473 4014 8.934507 AAAATAGACAAAACGGAAATGAAACA 57.065 26.923 0.00 0.00 0.00 2.83
3474 4015 8.934507 AAATAGACAAAACGGAAATGAAACAA 57.065 26.923 0.00 0.00 0.00 2.83
3475 4016 8.934507 AATAGACAAAACGGAAATGAAACAAA 57.065 26.923 0.00 0.00 0.00 2.83
3476 4017 8.934507 ATAGACAAAACGGAAATGAAACAAAA 57.065 26.923 0.00 0.00 0.00 2.44
3477 4018 7.659652 AGACAAAACGGAAATGAAACAAAAA 57.340 28.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 169 4.898320 TGTGTGTGTCTATGAATGCTTCT 58.102 39.130 0.00 0.00 0.00 2.85
163 170 5.808042 ATGTGTGTGTCTATGAATGCTTC 57.192 39.130 0.00 0.00 0.00 3.86
164 171 6.016024 ACAAATGTGTGTGTCTATGAATGCTT 60.016 34.615 0.00 0.00 36.31 3.91
167 174 6.072563 TGGACAAATGTGTGTGTCTATGAATG 60.073 38.462 0.00 0.00 43.06 2.67
168 175 6.003326 TGGACAAATGTGTGTGTCTATGAAT 58.997 36.000 0.00 0.00 43.06 2.57
169 176 5.238432 GTGGACAAATGTGTGTGTCTATGAA 59.762 40.000 0.00 0.00 43.06 2.57
170 177 4.754618 GTGGACAAATGTGTGTGTCTATGA 59.245 41.667 0.00 0.00 43.06 2.15
171 178 4.083324 GGTGGACAAATGTGTGTGTCTATG 60.083 45.833 0.00 0.00 43.06 2.23
172 179 4.072131 GGTGGACAAATGTGTGTGTCTAT 58.928 43.478 0.00 0.00 43.06 1.98
173 180 3.472652 GGTGGACAAATGTGTGTGTCTA 58.527 45.455 0.00 0.00 43.06 2.59
174 181 2.297701 GGTGGACAAATGTGTGTGTCT 58.702 47.619 0.00 0.00 43.06 3.41
175 182 1.002900 CGGTGGACAAATGTGTGTGTC 60.003 52.381 0.00 0.00 42.83 3.67
328 335 4.583073 ACACTACACGGTCATATGCTATGA 59.417 41.667 0.00 2.81 0.00 2.15
333 340 6.411630 TTTTAACACTACACGGTCATATGC 57.588 37.500 0.00 0.00 0.00 3.14
338 345 3.001127 GCGTTTTTAACACTACACGGTCA 59.999 43.478 0.00 0.00 0.00 4.02
554 675 0.734942 CAGTAAACGCGTCCGGATGT 60.735 55.000 24.33 12.88 39.22 3.06
556 677 1.153706 CCAGTAAACGCGTCCGGAT 60.154 57.895 14.44 0.00 39.22 4.18
570 691 0.038744 CTGACCCCTCAAATGCCAGT 59.961 55.000 0.00 0.00 0.00 4.00
576 697 4.366267 ACAGTAGATCTGACCCCTCAAAT 58.634 43.478 5.18 0.00 46.27 2.32
599 720 2.413351 GAGCATCTACAGCCGCGA 59.587 61.111 8.23 0.00 0.00 5.87
649 770 2.681848 CCAGCTCTGCTCATTACTTTGG 59.318 50.000 0.00 0.00 36.40 3.28
727 946 3.318839 CGGTGGAATGGAATACCTACGTA 59.681 47.826 0.00 0.00 37.04 3.57
728 947 2.101917 CGGTGGAATGGAATACCTACGT 59.898 50.000 0.00 0.00 37.04 3.57
729 948 2.750948 CGGTGGAATGGAATACCTACG 58.249 52.381 0.00 0.00 37.04 3.51
730 949 2.158871 TGCGGTGGAATGGAATACCTAC 60.159 50.000 0.00 0.00 37.04 3.18
733 952 1.021968 GTGCGGTGGAATGGAATACC 58.978 55.000 0.00 0.00 0.00 2.73
875 1108 5.430089 AGCTAGAGGGGTATGAAAAGATTGT 59.570 40.000 0.00 0.00 0.00 2.71
878 1111 5.472347 AGAGCTAGAGGGGTATGAAAAGAT 58.528 41.667 0.00 0.00 0.00 2.40
892 1125 1.357334 GTTCGCCGGAGAGCTAGAG 59.643 63.158 14.64 0.00 0.00 2.43
956 1189 0.671781 CTGGTTGTTCGCTGGAGAGG 60.672 60.000 0.00 0.00 0.00 3.69
966 1199 1.263217 CACCGCACTTACTGGTTGTTC 59.737 52.381 0.00 0.00 32.48 3.18
1066 1299 2.813908 GAGAACCGACGGCGCAAT 60.814 61.111 15.39 0.00 35.83 3.56
1149 1382 1.519455 GAACACTCGCTGGATCGGG 60.519 63.158 0.00 0.00 35.74 5.14
1201 1434 3.470567 GAAGCCGTCGTCACTGCG 61.471 66.667 0.00 0.00 37.79 5.18
1202 1435 3.112709 GGAAGCCGTCGTCACTGC 61.113 66.667 0.00 0.00 33.08 4.40
1204 1437 4.052229 CGGGAAGCCGTCGTCACT 62.052 66.667 0.00 0.00 0.00 3.41
1293 1526 2.031870 CCGGTCTCCATCACATACTCA 58.968 52.381 0.00 0.00 0.00 3.41
1299 1532 1.987855 GTCCCCGGTCTCCATCACA 60.988 63.158 0.00 0.00 0.00 3.58
1386 1624 4.577246 GCCTCGTCGCCAGCTAGG 62.577 72.222 0.00 0.00 41.84 3.02
1746 2277 7.972832 TCTTTACCTGGTAAACAATACACAG 57.027 36.000 24.39 13.51 33.76 3.66
1752 2283 8.706322 ATGTCTTTCTTTACCTGGTAAACAAT 57.294 30.769 24.39 6.32 33.76 2.71
1765 2296 6.660521 AGGATGCATGTCAATGTCTTTCTTTA 59.339 34.615 2.46 0.00 36.08 1.85
1767 2298 5.014858 AGGATGCATGTCAATGTCTTTCTT 58.985 37.500 2.46 0.00 36.08 2.52
1768 2299 4.597004 AGGATGCATGTCAATGTCTTTCT 58.403 39.130 2.46 0.00 36.08 2.52
1769 2300 4.495349 CGAGGATGCATGTCAATGTCTTTC 60.495 45.833 2.46 0.00 36.08 2.62
1784 2315 4.521062 ACCTGCGAGCGAGGATGC 62.521 66.667 16.47 0.00 34.37 3.91
1789 2320 4.504916 CCCTCACCTGCGAGCGAG 62.505 72.222 0.00 0.00 0.00 5.03
2026 2566 2.967397 CGAGGAACGCCAGGTACA 59.033 61.111 0.00 0.00 36.29 2.90
2063 2603 3.916392 CTCGCTCACACACGGGTCC 62.916 68.421 0.00 0.00 0.00 4.46
2070 2610 1.185618 AGGTAAGCCTCGCTCACACA 61.186 55.000 0.00 0.00 42.67 3.72
2400 2940 1.817099 CTTGCACCTCGCCATCTCC 60.817 63.158 0.00 0.00 41.33 3.71
2510 3050 4.142160 GCAGGTTCAGATTAATTCCCAACC 60.142 45.833 9.78 9.78 37.04 3.77
2539 3080 3.387374 AGGGAGTAGATCTCAACTGCATG 59.613 47.826 16.28 0.00 44.40 4.06
2543 3084 2.621055 CCGAGGGAGTAGATCTCAACTG 59.379 54.545 0.00 0.00 44.40 3.16
2546 3087 3.288964 GAACCGAGGGAGTAGATCTCAA 58.711 50.000 0.00 0.00 44.40 3.02
2547 3088 2.423088 GGAACCGAGGGAGTAGATCTCA 60.423 54.545 0.00 0.00 44.40 3.27
2556 3097 5.681639 ACAAATATTTAGGAACCGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2557 3098 5.427481 AGACAAATATTTAGGAACCGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2558 3099 5.681639 AGACAAATATTTAGGAACCGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2559 3100 7.625828 AAAGACAAATATTTAGGAACCGAGG 57.374 36.000 0.00 0.00 0.00 4.63
2586 3127 8.804743 CGTACGTAGTCATTTGTTGAAATATCT 58.195 33.333 7.22 0.00 43.93 1.98
2587 3128 8.054236 CCGTACGTAGTCATTTGTTGAAATATC 58.946 37.037 15.21 0.00 43.93 1.63
2588 3129 7.760794 TCCGTACGTAGTCATTTGTTGAAATAT 59.239 33.333 15.21 0.00 43.93 1.28
2589 3130 7.089538 TCCGTACGTAGTCATTTGTTGAAATA 58.910 34.615 15.21 0.00 43.93 1.40
2590 3131 5.927689 TCCGTACGTAGTCATTTGTTGAAAT 59.072 36.000 15.21 0.00 43.93 2.17
2591 3132 5.288015 TCCGTACGTAGTCATTTGTTGAAA 58.712 37.500 15.21 0.00 43.93 2.69
2592 3133 4.869215 TCCGTACGTAGTCATTTGTTGAA 58.131 39.130 15.21 0.00 43.93 2.69
2593 3134 4.478699 CTCCGTACGTAGTCATTTGTTGA 58.521 43.478 15.21 0.00 43.93 3.18
2594 3135 3.060363 GCTCCGTACGTAGTCATTTGTTG 59.940 47.826 15.21 0.00 43.93 3.33
2595 3136 3.248266 GCTCCGTACGTAGTCATTTGTT 58.752 45.455 15.21 0.00 43.93 2.83
2596 3137 2.229543 TGCTCCGTACGTAGTCATTTGT 59.770 45.455 15.21 0.00 43.93 2.83
2597 3138 2.871133 TGCTCCGTACGTAGTCATTTG 58.129 47.619 15.21 0.00 43.93 2.32
2598 3139 3.581024 TTGCTCCGTACGTAGTCATTT 57.419 42.857 15.21 0.00 43.93 2.32
2599 3140 3.581024 TTTGCTCCGTACGTAGTCATT 57.419 42.857 15.21 0.00 43.93 2.57
2600 3141 3.581024 TTTTGCTCCGTACGTAGTCAT 57.419 42.857 15.21 0.00 43.93 3.06
2601 3142 3.581024 ATTTTGCTCCGTACGTAGTCA 57.419 42.857 15.21 7.62 43.93 3.41
2602 3143 6.254157 TCATTTATTTTGCTCCGTACGTAGTC 59.746 38.462 15.21 5.03 43.93 2.59
2604 3145 6.578020 TCATTTATTTTGCTCCGTACGTAG 57.422 37.500 15.21 9.26 0.00 3.51
2605 3146 6.964741 TTCATTTATTTTGCTCCGTACGTA 57.035 33.333 15.21 0.00 0.00 3.57
2606 3147 5.866335 TTCATTTATTTTGCTCCGTACGT 57.134 34.783 15.21 0.00 0.00 3.57
2607 3148 6.715464 AGATTCATTTATTTTGCTCCGTACG 58.285 36.000 8.69 8.69 0.00 3.67
2608 3149 8.609176 TGTAGATTCATTTATTTTGCTCCGTAC 58.391 33.333 0.00 0.00 0.00 3.67
2609 3150 8.609176 GTGTAGATTCATTTATTTTGCTCCGTA 58.391 33.333 0.00 0.00 0.00 4.02
2610 3151 7.336931 AGTGTAGATTCATTTATTTTGCTCCGT 59.663 33.333 0.00 0.00 0.00 4.69
2611 3152 7.697691 AGTGTAGATTCATTTATTTTGCTCCG 58.302 34.615 0.00 0.00 0.00 4.63
2612 3153 8.897752 AGAGTGTAGATTCATTTATTTTGCTCC 58.102 33.333 0.00 0.00 0.00 4.70
2652 3193 9.653287 CAAATGGACTAACACATACGGATATAT 57.347 33.333 0.00 0.00 0.00 0.86
2653 3194 8.862085 TCAAATGGACTAACACATACGGATATA 58.138 33.333 0.00 0.00 0.00 0.86
2654 3195 7.732025 TCAAATGGACTAACACATACGGATAT 58.268 34.615 0.00 0.00 0.00 1.63
2655 3196 7.114866 TCAAATGGACTAACACATACGGATA 57.885 36.000 0.00 0.00 0.00 2.59
2656 3197 5.984725 TCAAATGGACTAACACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
2657 3198 5.408880 TCAAATGGACTAACACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
2658 3199 6.489127 TTTCAAATGGACTAACACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
2659 3200 7.974675 AGATTTCAAATGGACTAACACATACG 58.025 34.615 0.00 0.00 0.00 3.06
2689 3230 9.588096 ACTCCCTCTGTTTTTAAATATTTGTCT 57.412 29.630 11.05 0.00 0.00 3.41
2695 3236 9.892130 CAGACTACTCCCTCTGTTTTTAAATAT 57.108 33.333 0.00 0.00 30.97 1.28
2696 3237 8.877195 ACAGACTACTCCCTCTGTTTTTAAATA 58.123 33.333 0.00 0.00 43.81 1.40
2697 3238 7.746703 ACAGACTACTCCCTCTGTTTTTAAAT 58.253 34.615 0.00 0.00 43.81 1.40
2698 3239 7.133133 ACAGACTACTCCCTCTGTTTTTAAA 57.867 36.000 0.00 0.00 43.81 1.52
2699 3240 6.742559 ACAGACTACTCCCTCTGTTTTTAA 57.257 37.500 0.00 0.00 43.81 1.52
2706 3247 3.165875 TGGAAACAGACTACTCCCTCTG 58.834 50.000 0.00 0.00 39.95 3.35
2707 3248 3.544698 TGGAAACAGACTACTCCCTCT 57.455 47.619 0.00 0.00 35.01 3.69
2721 3262 9.962783 AGTACAACTCTATATATCGTTGGAAAC 57.037 33.333 19.85 15.89 45.31 2.78
2724 3265 8.944029 GCTAGTACAACTCTATATATCGTTGGA 58.056 37.037 19.85 13.44 40.63 3.53
2725 3266 8.727910 TGCTAGTACAACTCTATATATCGTTGG 58.272 37.037 19.85 9.30 40.63 3.77
2733 3274 8.978472 TGTCCTTTTGCTAGTACAACTCTATAT 58.022 33.333 0.00 0.00 0.00 0.86
2734 3275 8.248945 GTGTCCTTTTGCTAGTACAACTCTATA 58.751 37.037 0.00 0.00 0.00 1.31
2735 3276 7.097834 GTGTCCTTTTGCTAGTACAACTCTAT 58.902 38.462 0.00 0.00 0.00 1.98
2736 3277 6.453092 GTGTCCTTTTGCTAGTACAACTCTA 58.547 40.000 0.00 0.00 0.00 2.43
2737 3278 5.298347 GTGTCCTTTTGCTAGTACAACTCT 58.702 41.667 0.00 0.00 0.00 3.24
2738 3279 4.150098 CGTGTCCTTTTGCTAGTACAACTC 59.850 45.833 0.00 0.00 0.00 3.01
2739 3280 4.056050 CGTGTCCTTTTGCTAGTACAACT 58.944 43.478 0.00 0.00 0.00 3.16
2740 3281 3.805971 ACGTGTCCTTTTGCTAGTACAAC 59.194 43.478 0.00 0.00 0.00 3.32
2741 3282 3.805422 CACGTGTCCTTTTGCTAGTACAA 59.195 43.478 7.58 0.00 0.00 2.41
2742 3283 3.386486 CACGTGTCCTTTTGCTAGTACA 58.614 45.455 7.58 0.00 0.00 2.90
2743 3284 2.157085 GCACGTGTCCTTTTGCTAGTAC 59.843 50.000 18.38 0.00 32.00 2.73
2744 3285 2.409975 GCACGTGTCCTTTTGCTAGTA 58.590 47.619 18.38 0.00 32.00 1.82
2745 3286 1.226746 GCACGTGTCCTTTTGCTAGT 58.773 50.000 18.38 0.00 32.00 2.57
2746 3287 0.163788 CGCACGTGTCCTTTTGCTAG 59.836 55.000 18.38 0.00 32.56 3.42
2747 3288 0.531090 ACGCACGTGTCCTTTTGCTA 60.531 50.000 18.38 0.00 32.56 3.49
2748 3289 1.373590 AACGCACGTGTCCTTTTGCT 61.374 50.000 18.38 0.00 32.56 3.91
2749 3290 1.063488 AACGCACGTGTCCTTTTGC 59.937 52.632 18.38 0.00 0.00 3.68
2750 3291 1.199852 GCAACGCACGTGTCCTTTTG 61.200 55.000 18.38 13.44 0.00 2.44
2751 3292 1.063488 GCAACGCACGTGTCCTTTT 59.937 52.632 18.38 0.57 0.00 2.27
2752 3293 1.649390 TTGCAACGCACGTGTCCTTT 61.649 50.000 18.38 2.41 38.71 3.11
2753 3294 2.109739 TTGCAACGCACGTGTCCTT 61.110 52.632 18.38 3.06 38.71 3.36
2754 3295 2.512745 TTGCAACGCACGTGTCCT 60.513 55.556 18.38 0.00 38.71 3.85
2755 3296 2.351888 GTTGCAACGCACGTGTCC 60.352 61.111 18.38 0.00 38.71 4.02
2756 3297 1.492319 TAGGTTGCAACGCACGTGTC 61.492 55.000 22.67 8.63 38.71 3.67
2757 3298 1.090625 TTAGGTTGCAACGCACGTGT 61.091 50.000 22.67 0.00 38.71 4.49
2758 3299 0.028242 TTTAGGTTGCAACGCACGTG 59.972 50.000 22.67 12.28 38.71 4.49
2759 3300 0.733729 TTTTAGGTTGCAACGCACGT 59.266 45.000 22.67 5.12 38.71 4.49
2760 3301 1.828832 TTTTTAGGTTGCAACGCACG 58.171 45.000 22.67 0.00 38.71 5.34
2778 3319 7.662669 GCCATGGCCATTGAAGATTATATTTTT 59.337 33.333 27.24 0.00 34.56 1.94
2779 3320 7.016858 AGCCATGGCCATTGAAGATTATATTTT 59.983 33.333 33.14 4.38 43.17 1.82
2780 3321 6.499350 AGCCATGGCCATTGAAGATTATATTT 59.501 34.615 33.14 4.74 43.17 1.40
2781 3322 6.021030 AGCCATGGCCATTGAAGATTATATT 58.979 36.000 33.14 5.13 43.17 1.28
2782 3323 5.586877 AGCCATGGCCATTGAAGATTATAT 58.413 37.500 33.14 5.56 43.17 0.86
2783 3324 5.001833 AGCCATGGCCATTGAAGATTATA 57.998 39.130 33.14 0.00 43.17 0.98
2784 3325 3.853207 AGCCATGGCCATTGAAGATTAT 58.147 40.909 33.14 6.79 43.17 1.28
2785 3326 3.317455 AGCCATGGCCATTGAAGATTA 57.683 42.857 33.14 0.00 43.17 1.75
2786 3327 2.170012 AGCCATGGCCATTGAAGATT 57.830 45.000 33.14 7.61 43.17 2.40
2787 3328 3.537795 ATAGCCATGGCCATTGAAGAT 57.462 42.857 33.14 13.77 43.17 2.40
2788 3329 4.662966 ATATAGCCATGGCCATTGAAGA 57.337 40.909 33.14 10.14 43.17 2.87
2789 3330 5.733620 AAATATAGCCATGGCCATTGAAG 57.266 39.130 33.14 7.40 43.17 3.02
2790 3331 5.742546 GCAAAATATAGCCATGGCCATTGAA 60.743 40.000 33.14 10.94 43.17 2.69
2791 3332 4.262549 GCAAAATATAGCCATGGCCATTGA 60.263 41.667 33.14 11.73 43.17 2.57
2792 3333 3.998341 GCAAAATATAGCCATGGCCATTG 59.002 43.478 33.14 25.23 43.17 2.82
2793 3334 3.905591 AGCAAAATATAGCCATGGCCATT 59.094 39.130 33.14 24.59 43.17 3.16
2794 3335 3.259876 CAGCAAAATATAGCCATGGCCAT 59.740 43.478 33.14 27.15 43.17 4.40
2795 3336 2.629137 CAGCAAAATATAGCCATGGCCA 59.371 45.455 33.14 21.73 43.17 5.36
2796 3337 2.611224 GCAGCAAAATATAGCCATGGCC 60.611 50.000 33.14 15.39 43.17 5.36
2797 3338 2.680577 GCAGCAAAATATAGCCATGGC 58.319 47.619 30.12 30.12 42.33 4.40
2798 3339 2.294233 ACGCAGCAAAATATAGCCATGG 59.706 45.455 7.63 7.63 0.00 3.66
2799 3340 3.003585 TGACGCAGCAAAATATAGCCATG 59.996 43.478 0.00 0.00 0.00 3.66
2800 3341 3.003689 GTGACGCAGCAAAATATAGCCAT 59.996 43.478 0.00 0.00 0.00 4.40
2801 3342 2.354510 GTGACGCAGCAAAATATAGCCA 59.645 45.455 0.00 0.00 0.00 4.75
2802 3343 2.287009 GGTGACGCAGCAAAATATAGCC 60.287 50.000 0.00 0.00 0.00 3.93
2803 3344 2.614057 AGGTGACGCAGCAAAATATAGC 59.386 45.455 10.74 0.00 33.95 2.97
2804 3345 5.984233 TTAGGTGACGCAGCAAAATATAG 57.016 39.130 10.74 0.00 33.95 1.31
2805 3346 6.935741 ATTTAGGTGACGCAGCAAAATATA 57.064 33.333 10.74 0.00 33.95 0.86
2806 3347 5.835113 ATTTAGGTGACGCAGCAAAATAT 57.165 34.783 10.74 0.00 33.95 1.28
2807 3348 5.644206 TGTATTTAGGTGACGCAGCAAAATA 59.356 36.000 10.74 4.89 33.95 1.40
2808 3349 4.457603 TGTATTTAGGTGACGCAGCAAAAT 59.542 37.500 10.74 5.60 33.95 1.82
2809 3350 3.815962 TGTATTTAGGTGACGCAGCAAAA 59.184 39.130 10.74 3.37 33.95 2.44
2810 3351 3.187637 GTGTATTTAGGTGACGCAGCAAA 59.812 43.478 10.74 9.18 33.95 3.68
2811 3352 2.739913 GTGTATTTAGGTGACGCAGCAA 59.260 45.455 10.74 0.00 33.95 3.91
2812 3353 2.289133 TGTGTATTTAGGTGACGCAGCA 60.289 45.455 10.74 0.00 33.95 4.41
2813 3354 2.343101 TGTGTATTTAGGTGACGCAGC 58.657 47.619 1.54 1.54 0.00 5.25
2814 3355 5.545658 AATTGTGTATTTAGGTGACGCAG 57.454 39.130 0.00 0.00 35.22 5.18
2815 3356 6.167685 AGTAATTGTGTATTTAGGTGACGCA 58.832 36.000 0.00 0.00 0.00 5.24
2816 3357 6.534079 AGAGTAATTGTGTATTTAGGTGACGC 59.466 38.462 0.00 0.00 0.00 5.19
2817 3358 7.758076 TGAGAGTAATTGTGTATTTAGGTGACG 59.242 37.037 0.00 0.00 0.00 4.35
2818 3359 8.997621 TGAGAGTAATTGTGTATTTAGGTGAC 57.002 34.615 0.00 0.00 0.00 3.67
2869 3410 8.881743 CCAGTTTCAGAAATTGTTTTGATTTCA 58.118 29.630 15.22 0.00 42.93 2.69
2870 3411 7.852454 GCCAGTTTCAGAAATTGTTTTGATTTC 59.148 33.333 15.22 2.25 41.55 2.17
2871 3412 7.465781 CGCCAGTTTCAGAAATTGTTTTGATTT 60.466 33.333 15.22 0.00 0.00 2.17
2872 3413 6.018832 CGCCAGTTTCAGAAATTGTTTTGATT 60.019 34.615 15.22 0.00 0.00 2.57
2873 3414 5.463061 CGCCAGTTTCAGAAATTGTTTTGAT 59.537 36.000 15.22 0.00 0.00 2.57
2874 3415 4.803088 CGCCAGTTTCAGAAATTGTTTTGA 59.197 37.500 15.22 0.00 0.00 2.69
2875 3416 4.803088 TCGCCAGTTTCAGAAATTGTTTTG 59.197 37.500 15.22 3.65 0.00 2.44
2876 3417 5.004922 TCGCCAGTTTCAGAAATTGTTTT 57.995 34.783 15.22 0.00 0.00 2.43
2877 3418 4.647424 TCGCCAGTTTCAGAAATTGTTT 57.353 36.364 15.22 0.00 0.00 2.83
2878 3419 4.142271 TGTTCGCCAGTTTCAGAAATTGTT 60.142 37.500 15.22 0.00 0.00 2.83
2879 3420 3.380004 TGTTCGCCAGTTTCAGAAATTGT 59.620 39.130 15.22 0.00 0.00 2.71
2880 3421 3.963665 TGTTCGCCAGTTTCAGAAATTG 58.036 40.909 10.72 10.72 0.00 2.32
2881 3422 4.853924 ATGTTCGCCAGTTTCAGAAATT 57.146 36.364 0.00 0.00 0.00 1.82
2882 3423 6.515272 AATATGTTCGCCAGTTTCAGAAAT 57.485 33.333 0.00 0.00 0.00 2.17
2883 3424 5.957842 AATATGTTCGCCAGTTTCAGAAA 57.042 34.783 0.00 0.00 0.00 2.52
2884 3425 5.471797 TCAAATATGTTCGCCAGTTTCAGAA 59.528 36.000 0.00 0.00 0.00 3.02
2885 3426 5.000591 TCAAATATGTTCGCCAGTTTCAGA 58.999 37.500 0.00 0.00 0.00 3.27
2886 3427 5.295431 TCAAATATGTTCGCCAGTTTCAG 57.705 39.130 0.00 0.00 0.00 3.02
2887 3428 5.697473 TTCAAATATGTTCGCCAGTTTCA 57.303 34.783 0.00 0.00 0.00 2.69
2888 3429 6.806249 TGATTTCAAATATGTTCGCCAGTTTC 59.194 34.615 0.00 0.00 0.00 2.78
2889 3430 6.686630 TGATTTCAAATATGTTCGCCAGTTT 58.313 32.000 0.00 0.00 0.00 2.66
2890 3431 6.266168 TGATTTCAAATATGTTCGCCAGTT 57.734 33.333 0.00 0.00 0.00 3.16
2891 3432 5.895636 TGATTTCAAATATGTTCGCCAGT 57.104 34.783 0.00 0.00 0.00 4.00
2892 3433 6.267817 ACATGATTTCAAATATGTTCGCCAG 58.732 36.000 0.00 0.00 30.05 4.85
2893 3434 6.206395 ACATGATTTCAAATATGTTCGCCA 57.794 33.333 0.00 0.00 30.05 5.69
2894 3435 7.192913 TGTACATGATTTCAAATATGTTCGCC 58.807 34.615 0.00 1.19 35.55 5.54
2895 3436 8.613613 TTGTACATGATTTCAAATATGTTCGC 57.386 30.769 0.00 4.27 35.55 4.70
3039 3580 9.965824 ATGTTCAACGATTCTAGAAAATTGTTT 57.034 25.926 9.71 0.00 39.94 2.83
3040 3581 9.965824 AATGTTCAACGATTCTAGAAAATTGTT 57.034 25.926 9.71 7.51 41.73 2.83
3041 3582 9.965824 AAATGTTCAACGATTCTAGAAAATTGT 57.034 25.926 9.71 1.07 35.23 2.71
3046 3587 9.923143 TCTAGAAATGTTCAACGATTCTAGAAA 57.077 29.630 26.92 15.16 43.74 2.52
3050 3591 9.869757 TGAATCTAGAAATGTTCAACGATTCTA 57.130 29.630 12.04 12.04 38.37 2.10
3051 3592 8.777865 TGAATCTAGAAATGTTCAACGATTCT 57.222 30.769 11.21 11.21 38.37 2.40
3052 3593 9.643652 GATGAATCTAGAAATGTTCAACGATTC 57.356 33.333 9.86 13.85 38.23 2.52
3053 3594 9.166173 TGATGAATCTAGAAATGTTCAACGATT 57.834 29.630 9.86 0.00 34.62 3.34
3054 3595 8.722480 TGATGAATCTAGAAATGTTCAACGAT 57.278 30.769 9.86 0.00 34.62 3.73
3055 3596 8.546597 TTGATGAATCTAGAAATGTTCAACGA 57.453 30.769 9.86 5.56 34.62 3.85
3056 3597 9.055248 GTTTGATGAATCTAGAAATGTTCAACG 57.945 33.333 9.86 0.00 34.62 4.10
3057 3598 9.897744 TGTTTGATGAATCTAGAAATGTTCAAC 57.102 29.630 9.86 8.32 34.62 3.18
3069 3610 9.045223 CCGATACTGAAATGTTTGATGAATCTA 57.955 33.333 0.00 0.00 0.00 1.98
3070 3611 7.770433 TCCGATACTGAAATGTTTGATGAATCT 59.230 33.333 0.00 0.00 0.00 2.40
3071 3612 7.919690 TCCGATACTGAAATGTTTGATGAATC 58.080 34.615 0.00 0.00 0.00 2.52
3072 3613 7.864108 TCCGATACTGAAATGTTTGATGAAT 57.136 32.000 0.00 0.00 0.00 2.57
3073 3614 7.552330 TCATCCGATACTGAAATGTTTGATGAA 59.448 33.333 0.00 0.00 33.86 2.57
3074 3615 7.047271 TCATCCGATACTGAAATGTTTGATGA 58.953 34.615 0.00 0.00 34.25 2.92
3075 3616 7.250445 TCATCCGATACTGAAATGTTTGATG 57.750 36.000 0.00 0.00 0.00 3.07
3076 3617 8.455903 AATCATCCGATACTGAAATGTTTGAT 57.544 30.769 0.00 0.00 0.00 2.57
3077 3618 7.864108 AATCATCCGATACTGAAATGTTTGA 57.136 32.000 0.00 0.00 0.00 2.69
3078 3619 8.915871 AAAATCATCCGATACTGAAATGTTTG 57.084 30.769 0.00 0.00 0.00 2.93
3104 3645 7.617041 AAATTGTTCGACCAATTTCCAAAAA 57.383 28.000 23.22 0.00 46.73 1.94
3112 3653 8.887717 TGAATTTCAAAAATTGTTCGACCAATT 58.112 25.926 14.44 14.44 44.71 2.32
3113 3654 8.334632 GTGAATTTCAAAAATTGTTCGACCAAT 58.665 29.630 1.85 1.85 36.62 3.16
3114 3655 7.463383 CGTGAATTTCAAAAATTGTTCGACCAA 60.463 33.333 0.00 0.00 0.00 3.67
3115 3656 6.020281 CGTGAATTTCAAAAATTGTTCGACCA 60.020 34.615 0.00 0.00 0.00 4.02
3116 3657 6.197468 TCGTGAATTTCAAAAATTGTTCGACC 59.803 34.615 0.00 0.00 0.00 4.79
3117 3658 7.144007 TCGTGAATTTCAAAAATTGTTCGAC 57.856 32.000 0.00 0.00 0.00 4.20
3118 3659 7.486551 AGTTCGTGAATTTCAAAAATTGTTCGA 59.513 29.630 0.00 0.16 0.00 3.71
3119 3660 7.608755 AGTTCGTGAATTTCAAAAATTGTTCG 58.391 30.769 0.00 0.00 0.00 3.95
3120 3661 9.753669 AAAGTTCGTGAATTTCAAAAATTGTTC 57.246 25.926 0.00 0.00 0.00 3.18
3241 3782 9.480053 TTGAACAAAATTTTGCCAATTCAAAAA 57.520 22.222 27.79 16.19 45.50 1.94
3242 3783 9.649167 ATTGAACAAAATTTTGCCAATTCAAAA 57.351 22.222 30.56 20.02 46.14 2.44
3243 3784 9.649167 AATTGAACAAAATTTTGCCAATTCAAA 57.351 22.222 32.45 22.88 43.31 2.69
3244 3785 9.649167 AAATTGAACAAAATTTTGCCAATTCAA 57.351 22.222 34.72 32.40 44.46 2.69
3245 3786 9.298774 GAAATTGAACAAAATTTTGCCAATTCA 57.701 25.926 34.72 28.98 44.46 2.57
3246 3787 9.298774 TGAAATTGAACAAAATTTTGCCAATTC 57.701 25.926 34.72 29.88 44.46 2.17
3247 3788 9.819267 ATGAAATTGAACAAAATTTTGCCAATT 57.181 22.222 32.45 32.45 45.61 2.32
3248 3789 9.819267 AATGAAATTGAACAAAATTTTGCCAAT 57.181 22.222 28.23 28.23 41.82 3.16
3318 3859 9.643693 GCTTATTCAAAAATCTTCAGGAAATCA 57.356 29.630 0.00 0.00 0.00 2.57
3319 3860 9.643693 TGCTTATTCAAAAATCTTCAGGAAATC 57.356 29.630 0.00 0.00 0.00 2.17
3321 3862 9.829507 TTTGCTTATTCAAAAATCTTCAGGAAA 57.170 25.926 0.00 0.00 33.47 3.13
3322 3863 9.260002 GTTTGCTTATTCAAAAATCTTCAGGAA 57.740 29.630 0.00 0.00 37.65 3.36
3323 3864 8.420222 TGTTTGCTTATTCAAAAATCTTCAGGA 58.580 29.630 0.00 0.00 37.65 3.86
3324 3865 8.592105 TGTTTGCTTATTCAAAAATCTTCAGG 57.408 30.769 0.00 0.00 37.65 3.86
3341 3882 9.593134 TGTGATTTTGTAAGTAAATGTTTGCTT 57.407 25.926 12.30 12.30 43.76 3.91
3342 3883 9.593134 TTGTGATTTTGTAAGTAAATGTTTGCT 57.407 25.926 0.00 0.00 34.50 3.91
3448 3989 8.934507 TGTTTCATTTCCGTTTTGTCTATTTT 57.065 26.923 0.00 0.00 0.00 1.82
3449 3990 8.934507 TTGTTTCATTTCCGTTTTGTCTATTT 57.065 26.923 0.00 0.00 0.00 1.40
3450 3991 8.934507 TTTGTTTCATTTCCGTTTTGTCTATT 57.065 26.923 0.00 0.00 0.00 1.73
3451 3992 8.934507 TTTTGTTTCATTTCCGTTTTGTCTAT 57.065 26.923 0.00 0.00 0.00 1.98
3452 3993 8.758633 TTTTTGTTTCATTTCCGTTTTGTCTA 57.241 26.923 0.00 0.00 0.00 2.59
3453 3994 7.659652 TTTTTGTTTCATTTCCGTTTTGTCT 57.340 28.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.