Multiple sequence alignment - TraesCS3D01G029600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G029600 chr3D 100.000 2489 0 0 485 2973 10675205 10677693 0.000000e+00 4597
1 TraesCS3D01G029600 chr3D 100.000 198 0 0 1 198 10674721 10674918 1.900000e-97 366
2 TraesCS3D01G029600 chr3D 75.193 649 137 20 1487 2126 10660995 10661628 5.460000e-73 285
3 TraesCS3D01G029600 chr3D 100.000 125 0 0 3219 3343 10677939 10678063 7.210000e-57 231
4 TraesCS3D01G029600 chr3D 91.579 95 4 2 1331 1424 66523466 66523375 9.740000e-26 128
5 TraesCS3D01G029600 chr3A 86.273 1559 131 45 1418 2951 17578934 17577434 0.000000e+00 1616
6 TraesCS3D01G029600 chr3A 90.075 665 42 11 507 1168 17579970 17579327 0.000000e+00 841
7 TraesCS3D01G029600 chr3A 90.000 200 16 3 1 198 17580213 17580016 4.280000e-64 255
8 TraesCS3D01G029600 chr3A 90.625 96 5 3 1334 1429 194703966 194703875 1.260000e-24 124
9 TraesCS3D01G029600 chr3B 88.042 1246 119 21 1418 2653 26513812 26512587 0.000000e+00 1448
10 TraesCS3D01G029600 chr3B 87.923 621 50 9 550 1168 26514802 26514205 0.000000e+00 708
11 TraesCS3D01G029600 chr3B 74.478 670 145 19 1465 2126 15054849 15055500 1.980000e-67 267
12 TraesCS3D01G029600 chrUn 74.924 662 144 17 1464 2118 333045810 333046456 1.960000e-72 283
13 TraesCS3D01G029600 chr5A 91.489 94 5 1 1334 1427 526875400 526875310 3.500000e-25 126
14 TraesCS3D01G029600 chr5A 90.526 95 6 1 1331 1425 450750795 450750704 4.530000e-24 122
15 TraesCS3D01G029600 chr5D 90.625 96 6 1 1334 1429 225584162 225584070 1.260000e-24 124
16 TraesCS3D01G029600 chr5B 90.426 94 9 0 1331 1424 665204742 665204835 1.260000e-24 124
17 TraesCS3D01G029600 chr5B 88.235 102 8 2 1333 1433 62940322 62940420 5.860000e-23 119
18 TraesCS3D01G029600 chr2A 90.526 95 6 1 1331 1425 65084813 65084904 4.530000e-24 122
19 TraesCS3D01G029600 chr7D 89.691 97 7 1 1334 1430 498226568 498226661 1.630000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G029600 chr3D 10674721 10678063 3342 False 1731.333333 4597 100.000000 1 3343 3 chr3D.!!$F2 3342
1 TraesCS3D01G029600 chr3D 10660995 10661628 633 False 285.000000 285 75.193000 1487 2126 1 chr3D.!!$F1 639
2 TraesCS3D01G029600 chr3A 17577434 17580213 2779 True 904.000000 1616 88.782667 1 2951 3 chr3A.!!$R2 2950
3 TraesCS3D01G029600 chr3B 26512587 26514802 2215 True 1078.000000 1448 87.982500 550 2653 2 chr3B.!!$R1 2103
4 TraesCS3D01G029600 chr3B 15054849 15055500 651 False 267.000000 267 74.478000 1465 2126 1 chr3B.!!$F1 661
5 TraesCS3D01G029600 chrUn 333045810 333046456 646 False 283.000000 283 74.924000 1464 2118 1 chrUn.!!$F1 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.673644 CGCCAACTCTGAACCGGAAT 60.674 55.0 9.46 0.0 0.0 3.01 F
1005 1010 0.741221 GAGTTCTGGTGGCGATGGAC 60.741 60.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1030 1035 0.752054 CCCTCTAGCTGAGCTTCCAG 59.248 60.0 14.14 3.97 41.35 3.86 R
2793 3054 0.034059 CACAAGACTTCCCGCTCACT 59.966 55.0 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.123928 CCCTCTCGATTAGGCACCTT 58.876 55.000 8.18 0.00 32.34 3.50
79 80 0.673644 CGCCAACTCTGAACCGGAAT 60.674 55.000 9.46 0.00 0.00 3.01
82 83 3.279434 GCCAACTCTGAACCGGAATAAT 58.721 45.455 9.46 0.00 0.00 1.28
95 97 7.608376 TGAACCGGAATAATTTCTTGTGTATGA 59.392 33.333 9.46 0.00 32.16 2.15
117 119 7.387265 TGAGCTATTCATGTTATTTCCCCTA 57.613 36.000 0.00 0.00 0.00 3.53
135 137 4.314121 CCCTAGATACTTCTGCTGATTGC 58.686 47.826 0.00 0.00 43.25 3.56
163 165 5.072741 AGGAGATAAGCAAAACAGCTCAAA 58.927 37.500 0.00 0.00 45.89 2.69
168 171 8.302965 AGATAAGCAAAACAGCTCAAATTTTC 57.697 30.769 0.00 0.00 45.89 2.29
169 172 5.393902 AAGCAAAACAGCTCAAATTTTCG 57.606 34.783 0.00 0.00 45.89 3.46
170 173 4.681744 AGCAAAACAGCTCAAATTTTCGA 58.318 34.783 0.00 0.00 42.18 3.71
174 177 6.906678 GCAAAACAGCTCAAATTTTCGATTTT 59.093 30.769 0.00 0.00 0.00 1.82
177 180 6.998258 ACAGCTCAAATTTTCGATTTTCTG 57.002 33.333 0.00 0.00 0.00 3.02
179 182 6.418819 ACAGCTCAAATTTTCGATTTTCTGTG 59.581 34.615 0.00 0.00 30.03 3.66
185 188 9.973450 TCAAATTTTCGATTTTCTGTGGAAATA 57.027 25.926 0.00 0.00 40.57 1.40
505 508 2.729360 GTGAAATTTTGTTACTGCCCGC 59.271 45.455 0.00 0.00 0.00 6.13
536 539 7.615582 TTAGCTATGTCATTTTGAGGAACAG 57.384 36.000 0.00 0.00 0.00 3.16
539 542 5.065731 GCTATGTCATTTTGAGGAACAGGAG 59.934 44.000 0.00 0.00 0.00 3.69
559 562 4.036144 GGAGCAGGAGCAGATTACAATTTC 59.964 45.833 0.00 0.00 45.49 2.17
572 575 8.689972 CAGATTACAATTTCCCTTGCTAGATTT 58.310 33.333 0.00 0.00 0.00 2.17
589 592 1.872388 TTTGCAGAAACCGTCGATCA 58.128 45.000 0.00 0.00 0.00 2.92
616 619 1.163420 TTCTGCGTGCCGTGTCATTT 61.163 50.000 0.00 0.00 0.00 2.32
624 627 3.724716 CGTGCCGTGTCATTTCTGTTATG 60.725 47.826 0.00 0.00 0.00 1.90
632 635 7.011773 CGTGTCATTTCTGTTATGTTCTCTTG 58.988 38.462 0.00 0.00 0.00 3.02
633 636 7.095649 CGTGTCATTTCTGTTATGTTCTCTTGA 60.096 37.037 0.00 0.00 0.00 3.02
634 637 8.725148 GTGTCATTTCTGTTATGTTCTCTTGAT 58.275 33.333 0.00 0.00 0.00 2.57
652 655 7.710044 TCTCTTGATACTTCTGCTGAATTGATC 59.290 37.037 6.48 9.92 0.00 2.92
662 665 5.048504 TCTGCTGAATTGATCAAGGAAACAC 60.049 40.000 14.54 1.09 37.67 3.32
665 668 5.048504 GCTGAATTGATCAAGGAAACACTGA 60.049 40.000 14.54 0.00 37.67 3.41
691 694 6.849588 AACAGCTCAAATGTTCAATTTTCC 57.150 33.333 0.00 0.00 36.10 3.13
696 699 7.225145 CAGCTCAAATGTTCAATTTTCCTTTCA 59.775 33.333 0.00 0.00 0.00 2.69
697 700 7.440255 AGCTCAAATGTTCAATTTTCCTTTCAG 59.560 33.333 0.00 0.00 0.00 3.02
698 701 7.439056 GCTCAAATGTTCAATTTTCCTTTCAGA 59.561 33.333 0.00 0.00 0.00 3.27
699 702 9.316730 CTCAAATGTTCAATTTTCCTTTCAGAA 57.683 29.630 0.00 0.00 0.00 3.02
707 710 8.066612 TCAATTTTCCTTTCAGAACAGAAGTT 57.933 30.769 0.00 0.00 41.64 2.66
783 786 7.872483 CCCTTTAGATGCTTGTATTGTTGTTTT 59.128 33.333 0.00 0.00 0.00 2.43
851 856 1.003118 TGCCACACCAGTATCACTTCC 59.997 52.381 0.00 0.00 0.00 3.46
852 857 1.003118 GCCACACCAGTATCACTTCCA 59.997 52.381 0.00 0.00 0.00 3.53
853 858 2.356125 GCCACACCAGTATCACTTCCAT 60.356 50.000 0.00 0.00 0.00 3.41
854 859 3.273434 CCACACCAGTATCACTTCCATG 58.727 50.000 0.00 0.00 0.00 3.66
896 901 2.590114 GGAACAGGTACACGGGGCT 61.590 63.158 0.00 0.00 0.00 5.19
917 922 5.336213 GGCTGTGAGATTGTGTTGATCAATT 60.336 40.000 12.12 0.00 35.94 2.32
945 950 1.421646 AGCCTGGTTCTGCTTGTAGTT 59.578 47.619 0.00 0.00 32.94 2.24
970 975 6.374053 TGCAAACTAGCAATATCAAGTAAGCA 59.626 34.615 0.00 0.00 42.46 3.91
991 996 5.758784 AGCAAGTGGTAGTTACTTTGAGTTC 59.241 40.000 0.00 0.00 36.29 3.01
999 1004 2.163818 TACTTTGAGTTCTGGTGGCG 57.836 50.000 0.00 0.00 0.00 5.69
1005 1010 0.741221 GAGTTCTGGTGGCGATGGAC 60.741 60.000 0.00 0.00 0.00 4.02
1010 1015 2.202837 GGTGGCGATGGACGGTAC 60.203 66.667 0.00 0.00 42.83 3.34
1028 1033 3.510360 GGTACTAGCTCCAACAAGAGACA 59.490 47.826 0.00 0.00 35.82 3.41
1030 1035 3.996480 ACTAGCTCCAACAAGAGACAAC 58.004 45.455 0.00 0.00 35.82 3.32
1032 1037 2.843701 AGCTCCAACAAGAGACAACTG 58.156 47.619 0.00 0.00 35.82 3.16
1122 1127 1.139308 CTCTGTCTGCTCTGAGCCG 59.861 63.158 25.61 19.81 41.51 5.52
1150 1155 6.210784 CAGACCTCCGATATTCCAGGTAAATA 59.789 42.308 1.45 0.00 39.49 1.40
1153 1158 6.328148 ACCTCCGATATTCCAGGTAAATACAA 59.672 38.462 0.00 0.00 37.50 2.41
1183 1221 9.489084 GTGTATGCATATATTTACTTGTCCTCA 57.511 33.333 10.16 0.00 0.00 3.86
1197 1235 0.178921 TCCTCAGACACCAGCCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
1198 1236 0.036577 CCTCAGACACCAGCCTCTTG 60.037 60.000 0.00 0.00 0.00 3.02
1204 1242 2.706190 AGACACCAGCCTCTTGTAAAGT 59.294 45.455 0.00 0.00 46.34 2.66
1223 1459 8.673711 TGTAAAGTTCGGGATAAAATGAATCTG 58.326 33.333 0.00 0.00 0.00 2.90
1225 1461 7.703058 AAGTTCGGGATAAAATGAATCTGTT 57.297 32.000 0.00 0.00 0.00 3.16
1228 1464 6.677781 TCGGGATAAAATGAATCTGTTGTC 57.322 37.500 0.00 0.00 0.00 3.18
1229 1465 6.414732 TCGGGATAAAATGAATCTGTTGTCT 58.585 36.000 0.00 0.00 0.00 3.41
1231 1467 6.268566 GGGATAAAATGAATCTGTTGTCTGC 58.731 40.000 0.00 0.00 0.00 4.26
1236 1472 6.882610 AAATGAATCTGTTGTCTGCTGTAA 57.117 33.333 0.00 0.00 0.00 2.41
1237 1473 5.869753 ATGAATCTGTTGTCTGCTGTAAC 57.130 39.130 6.56 6.56 0.00 2.50
1252 1488 3.365220 GCTGTAACGCTAGTTGTCAAGAG 59.635 47.826 0.00 0.00 41.35 2.85
1254 1490 5.190992 TGTAACGCTAGTTGTCAAGAGAA 57.809 39.130 0.00 0.00 41.35 2.87
1256 1492 5.461078 TGTAACGCTAGTTGTCAAGAGAAAC 59.539 40.000 0.00 0.00 41.35 2.78
1263 1499 7.466050 CGCTAGTTGTCAAGAGAAACTTTCTTT 60.466 37.037 5.49 0.00 40.87 2.52
1264 1500 7.853437 GCTAGTTGTCAAGAGAAACTTTCTTTC 59.147 37.037 5.49 0.00 40.87 2.62
1266 1502 5.734855 TGTCAAGAGAAACTTTCTTTCGG 57.265 39.130 5.49 0.00 40.87 4.30
1267 1503 5.424757 TGTCAAGAGAAACTTTCTTTCGGA 58.575 37.500 5.49 0.20 40.87 4.55
1272 1508 7.170998 TCAAGAGAAACTTTCTTTCGGACATAC 59.829 37.037 5.49 0.00 40.87 2.39
1277 1513 8.365647 AGAAACTTTCTTTCGGACATACTTAGA 58.634 33.333 0.00 0.00 36.36 2.10
1319 1555 8.792830 ACAAAATGTGCAGTACTAATGTATCT 57.207 30.769 0.00 0.00 0.00 1.98
1321 1557 9.708222 CAAAATGTGCAGTACTAATGTATCTTC 57.292 33.333 0.00 0.00 0.00 2.87
1322 1558 9.672673 AAAATGTGCAGTACTAATGTATCTTCT 57.327 29.630 0.00 0.00 0.00 2.85
1324 1560 7.404671 TGTGCAGTACTAATGTATCTTCTCA 57.595 36.000 0.00 0.00 0.00 3.27
1327 1563 8.973378 GTGCAGTACTAATGTATCTTCTCATTC 58.027 37.037 0.00 0.00 36.06 2.67
1328 1564 8.144478 TGCAGTACTAATGTATCTTCTCATTCC 58.856 37.037 0.00 0.00 36.06 3.01
1335 1571 9.828852 CTAATGTATCTTCTCATTCCGTAGTAC 57.171 37.037 0.00 0.00 36.06 2.73
1336 1572 8.466617 AATGTATCTTCTCATTCCGTAGTACT 57.533 34.615 0.00 0.00 29.74 2.73
1337 1573 7.493743 TGTATCTTCTCATTCCGTAGTACTC 57.506 40.000 0.00 0.00 0.00 2.59
1338 1574 6.485984 TGTATCTTCTCATTCCGTAGTACTCC 59.514 42.308 0.00 0.00 0.00 3.85
1339 1575 4.205587 TCTTCTCATTCCGTAGTACTCCC 58.794 47.826 0.00 0.00 0.00 4.30
1340 1576 3.947612 TCTCATTCCGTAGTACTCCCT 57.052 47.619 0.00 0.00 0.00 4.20
1341 1577 3.818180 TCTCATTCCGTAGTACTCCCTC 58.182 50.000 0.00 0.00 0.00 4.30
1342 1578 3.458857 TCTCATTCCGTAGTACTCCCTCT 59.541 47.826 0.00 0.00 0.00 3.69
1343 1579 3.552875 TCATTCCGTAGTACTCCCTCTG 58.447 50.000 0.00 0.00 0.00 3.35
1344 1580 3.053842 TCATTCCGTAGTACTCCCTCTGT 60.054 47.826 0.00 0.00 0.00 3.41
1345 1581 4.164796 TCATTCCGTAGTACTCCCTCTGTA 59.835 45.833 0.00 0.00 0.00 2.74
1346 1582 4.574674 TTCCGTAGTACTCCCTCTGTAA 57.425 45.455 0.00 0.00 0.00 2.41
1347 1583 4.574674 TCCGTAGTACTCCCTCTGTAAA 57.425 45.455 0.00 0.00 0.00 2.01
1348 1584 4.265073 TCCGTAGTACTCCCTCTGTAAAC 58.735 47.826 0.00 0.00 0.00 2.01
1349 1585 4.012374 CCGTAGTACTCCCTCTGTAAACA 58.988 47.826 0.00 0.00 0.00 2.83
1350 1586 4.643784 CCGTAGTACTCCCTCTGTAAACAT 59.356 45.833 0.00 0.00 0.00 2.71
1351 1587 5.824624 CCGTAGTACTCCCTCTGTAAACATA 59.175 44.000 0.00 0.00 0.00 2.29
1352 1588 6.489361 CCGTAGTACTCCCTCTGTAAACATAT 59.511 42.308 0.00 0.00 0.00 1.78
1353 1589 7.663081 CCGTAGTACTCCCTCTGTAAACATATA 59.337 40.741 0.00 0.00 0.00 0.86
1354 1590 9.228949 CGTAGTACTCCCTCTGTAAACATATAT 57.771 37.037 0.00 0.00 0.00 0.86
1360 1596 8.808092 ACTCCCTCTGTAAACATATATAAGAGC 58.192 37.037 0.00 0.00 0.00 4.09
1361 1597 7.827701 TCCCTCTGTAAACATATATAAGAGCG 58.172 38.462 0.00 0.00 0.00 5.03
1362 1598 7.450634 TCCCTCTGTAAACATATATAAGAGCGT 59.549 37.037 0.00 0.00 0.00 5.07
1363 1599 8.088981 CCCTCTGTAAACATATATAAGAGCGTT 58.911 37.037 0.00 0.00 0.00 4.84
1364 1600 9.477484 CCTCTGTAAACATATATAAGAGCGTTT 57.523 33.333 0.00 0.00 0.00 3.60
1372 1608 9.640963 AACATATATAAGAGCGTTTAGATCACC 57.359 33.333 0.00 0.00 37.82 4.02
1373 1609 8.803235 ACATATATAAGAGCGTTTAGATCACCA 58.197 33.333 0.00 0.00 37.82 4.17
1374 1610 9.077674 CATATATAAGAGCGTTTAGATCACCAC 57.922 37.037 0.00 0.00 37.82 4.16
1375 1611 3.963428 AAGAGCGTTTAGATCACCACT 57.037 42.857 0.00 0.00 37.82 4.00
1376 1612 3.238108 AGAGCGTTTAGATCACCACTG 57.762 47.619 0.00 0.00 37.82 3.66
1377 1613 2.826128 AGAGCGTTTAGATCACCACTGA 59.174 45.455 0.00 0.00 37.82 3.41
1378 1614 3.258372 AGAGCGTTTAGATCACCACTGAA 59.742 43.478 0.00 0.00 37.82 3.02
1379 1615 3.589988 AGCGTTTAGATCACCACTGAAG 58.410 45.455 0.00 0.00 0.00 3.02
1380 1616 3.006967 AGCGTTTAGATCACCACTGAAGT 59.993 43.478 0.00 0.00 0.00 3.01
1381 1617 3.123621 GCGTTTAGATCACCACTGAAGTG 59.876 47.826 3.35 3.35 45.23 3.16
1394 1630 5.597813 CACTGAAGTGGTGATCTAAACAC 57.402 43.478 2.35 0.00 42.10 3.32
1395 1631 5.300752 CACTGAAGTGGTGATCTAAACACT 58.699 41.667 2.35 0.00 45.34 3.55
1396 1632 5.406780 CACTGAAGTGGTGATCTAAACACTC 59.593 44.000 4.34 0.60 42.85 3.51
1397 1633 5.305644 ACTGAAGTGGTGATCTAAACACTCT 59.694 40.000 4.34 0.00 42.85 3.24
1398 1634 6.174720 TGAAGTGGTGATCTAAACACTCTT 57.825 37.500 4.34 0.00 42.85 2.85
1399 1635 7.015292 ACTGAAGTGGTGATCTAAACACTCTTA 59.985 37.037 4.34 0.00 42.85 2.10
1400 1636 7.907389 TGAAGTGGTGATCTAAACACTCTTAT 58.093 34.615 4.34 0.00 42.85 1.73
1401 1637 9.031537 TGAAGTGGTGATCTAAACACTCTTATA 57.968 33.333 4.34 0.00 42.85 0.98
1416 1652 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
1417 1653 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
1418 1654 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
1419 1655 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
1435 1671 6.017852 CAGAGGGAGTACTTTGTTTTTCTGTC 60.018 42.308 0.00 0.00 0.00 3.51
1436 1672 4.814771 AGGGAGTACTTTGTTTTTCTGTCG 59.185 41.667 0.00 0.00 0.00 4.35
1437 1673 4.524749 GGAGTACTTTGTTTTTCTGTCGC 58.475 43.478 0.00 0.00 0.00 5.19
1472 1709 2.810852 GTGAGAGCCCTGTTCTTTTCTG 59.189 50.000 0.00 0.00 0.00 3.02
1480 1724 3.565902 CCCTGTTCTTTTCTGTTCCAGTC 59.434 47.826 0.00 0.00 32.61 3.51
1515 1759 2.710377 TCATATGCTTGTCTTGCCGTT 58.290 42.857 0.00 0.00 0.00 4.44
1571 1815 1.938016 GCCGTAACTTCCTTTGAGCGA 60.938 52.381 0.00 0.00 0.00 4.93
1859 2103 0.034756 TACGTGTTCTGCACTGCCAT 59.965 50.000 0.00 0.00 45.57 4.40
1899 2150 3.079578 CTGTTCAACATGGCATCTGAGT 58.920 45.455 0.00 0.00 0.00 3.41
2129 2380 3.023949 GCTCAGAGCCACCATCCGT 62.024 63.158 11.84 0.00 34.48 4.69
2131 2382 1.607801 CTCAGAGCCACCATCCGTGA 61.608 60.000 0.00 0.00 46.20 4.35
2141 2392 0.729140 CCATCCGTGAAAAGCGCAAC 60.729 55.000 11.47 0.00 0.00 4.17
2144 2395 1.298041 CCGTGAAAAGCGCAACGTT 60.298 52.632 11.47 0.00 0.00 3.99
2147 2398 1.073054 CGTGAAAAGCGCAACGTTTTC 60.073 47.619 19.88 19.88 39.13 2.29
2156 2407 3.098636 GCGCAACGTTTTCTATGATTCC 58.901 45.455 0.30 0.00 0.00 3.01
2170 2421 7.295322 TCTATGATTCCGATTCTGATGAAGT 57.705 36.000 0.00 0.00 35.44 3.01
2173 2424 5.601662 TGATTCCGATTCTGATGAAGTACC 58.398 41.667 0.00 0.00 35.44 3.34
2177 2428 3.493350 CCGATTCTGATGAAGTACCCAGG 60.493 52.174 0.00 0.00 35.44 4.45
2192 2443 1.596934 CAGGGCTTTAGGTCGCAGA 59.403 57.895 0.00 0.00 0.00 4.26
2196 2447 1.883926 GGGCTTTAGGTCGCAGAAAAA 59.116 47.619 0.00 0.00 39.69 1.94
2198 2449 2.095212 GGCTTTAGGTCGCAGAAAAAGG 60.095 50.000 0.00 0.00 39.69 3.11
2206 2457 0.456653 CGCAGAAAAAGGAATGGCCG 60.457 55.000 0.00 0.00 43.43 6.13
2214 2465 0.106519 AAGGAATGGCCGGAATCCTG 60.107 55.000 16.41 0.00 41.39 3.86
2217 2468 1.479389 GGAATGGCCGGAATCCTGATT 60.479 52.381 5.05 0.00 0.00 2.57
2218 2469 1.610522 GAATGGCCGGAATCCTGATTG 59.389 52.381 5.05 0.00 0.00 2.67
2228 2479 4.140536 GGAATCCTGATTGTTCTGATCCC 58.859 47.826 0.00 0.00 0.00 3.85
2231 2482 4.868172 TCCTGATTGTTCTGATCCCAAT 57.132 40.909 0.00 0.00 0.00 3.16
2243 2494 0.109342 ATCCCAATCATGAGCGACCC 59.891 55.000 0.09 0.00 0.00 4.46
2279 2530 5.771666 TGCCAGATTGATTCCTGATTATTCC 59.228 40.000 0.00 0.00 32.37 3.01
2297 2548 1.472878 TCCGAGTCTGAAGATGAACGG 59.527 52.381 0.00 0.00 37.17 4.44
2303 2554 1.089920 CTGAAGATGAACGGCCCTTG 58.910 55.000 0.00 0.00 0.00 3.61
2324 2575 2.498885 GGCTGCCAGATTCTCCAAAATT 59.501 45.455 15.17 0.00 0.00 1.82
2325 2576 3.429960 GGCTGCCAGATTCTCCAAAATTC 60.430 47.826 15.17 0.00 0.00 2.17
2327 2578 3.420893 TGCCAGATTCTCCAAAATTCGT 58.579 40.909 0.00 0.00 0.00 3.85
2339 2590 3.606346 CCAAAATTCGTGGTTATGAACGC 59.394 43.478 0.78 0.00 39.61 4.84
2349 2600 2.414161 GGTTATGAACGCTGAAGGTTGC 60.414 50.000 0.00 0.00 0.00 4.17
2358 2609 0.518636 CTGAAGGTTGCGGACATGTG 59.481 55.000 1.15 0.00 0.00 3.21
2359 2610 0.107643 TGAAGGTTGCGGACATGTGA 59.892 50.000 1.15 0.00 0.00 3.58
2364 2615 2.030007 AGGTTGCGGACATGTGATTTTG 60.030 45.455 1.15 0.00 0.00 2.44
2365 2616 2.288152 GGTTGCGGACATGTGATTTTGT 60.288 45.455 1.15 0.00 0.00 2.83
2372 2624 3.059166 GACATGTGATTTTGTGGTTGGC 58.941 45.455 1.15 0.00 0.00 4.52
2378 2630 2.364970 TGATTTTGTGGTTGGCTTCAGG 59.635 45.455 0.00 0.00 0.00 3.86
2390 2642 1.408969 GCTTCAGGGTTTTGGTTCCA 58.591 50.000 0.00 0.00 0.00 3.53
2397 2649 4.045334 TCAGGGTTTTGGTTCCAGGATATT 59.955 41.667 0.00 0.00 0.00 1.28
2398 2650 5.254267 TCAGGGTTTTGGTTCCAGGATATTA 59.746 40.000 0.00 0.00 0.00 0.98
2399 2651 6.068498 TCAGGGTTTTGGTTCCAGGATATTAT 60.068 38.462 0.00 0.00 0.00 1.28
2401 2653 7.782644 CAGGGTTTTGGTTCCAGGATATTATTA 59.217 37.037 0.00 0.00 0.00 0.98
2403 2655 8.585018 GGGTTTTGGTTCCAGGATATTATTATG 58.415 37.037 0.00 0.00 0.00 1.90
2404 2656 8.088365 GGTTTTGGTTCCAGGATATTATTATGC 58.912 37.037 0.00 0.00 0.00 3.14
2405 2657 7.775053 TTTGGTTCCAGGATATTATTATGCC 57.225 36.000 0.00 0.00 0.00 4.40
2406 2658 5.496556 TGGTTCCAGGATATTATTATGCCG 58.503 41.667 0.00 0.00 0.00 5.69
2407 2659 5.249622 TGGTTCCAGGATATTATTATGCCGA 59.750 40.000 0.00 0.00 0.00 5.54
2408 2660 5.817816 GGTTCCAGGATATTATTATGCCGAG 59.182 44.000 0.00 0.00 0.00 4.63
2415 2667 7.984050 CAGGATATTATTATGCCGAGTCTCAAT 59.016 37.037 0.00 0.00 0.00 2.57
2422 2674 3.998099 TGCCGAGTCTCAATATCTCAG 57.002 47.619 0.00 0.00 0.00 3.35
2424 2676 3.316588 TGCCGAGTCTCAATATCTCAGAC 59.683 47.826 0.00 0.00 37.42 3.51
2425 2677 3.305064 GCCGAGTCTCAATATCTCAGACC 60.305 52.174 0.00 0.00 37.82 3.85
2426 2678 4.141287 CCGAGTCTCAATATCTCAGACCT 58.859 47.826 0.00 0.00 37.82 3.85
2427 2679 4.582656 CCGAGTCTCAATATCTCAGACCTT 59.417 45.833 0.00 0.00 37.82 3.50
2428 2680 5.278266 CCGAGTCTCAATATCTCAGACCTTC 60.278 48.000 0.00 0.00 37.82 3.46
2429 2681 5.530915 CGAGTCTCAATATCTCAGACCTTCT 59.469 44.000 0.00 0.00 37.82 2.85
2430 2682 6.513230 CGAGTCTCAATATCTCAGACCTTCTG 60.513 46.154 0.00 0.00 45.59 3.02
2443 2695 1.705186 ACCTTCTGGTAGCATGGTTGT 59.295 47.619 1.12 0.00 46.43 3.32
2445 2697 2.749621 CCTTCTGGTAGCATGGTTGTTC 59.250 50.000 1.12 0.00 0.00 3.18
2446 2698 3.560025 CCTTCTGGTAGCATGGTTGTTCT 60.560 47.826 1.12 0.00 0.00 3.01
2448 2700 4.471904 TCTGGTAGCATGGTTGTTCTAG 57.528 45.455 1.12 0.00 0.00 2.43
2449 2701 3.838317 TCTGGTAGCATGGTTGTTCTAGT 59.162 43.478 1.12 0.00 0.00 2.57
2450 2702 3.935203 CTGGTAGCATGGTTGTTCTAGTG 59.065 47.826 1.12 0.00 0.00 2.74
2451 2703 3.580895 TGGTAGCATGGTTGTTCTAGTGA 59.419 43.478 1.12 0.00 0.00 3.41
2452 2704 4.041075 TGGTAGCATGGTTGTTCTAGTGAA 59.959 41.667 1.12 0.00 0.00 3.18
2453 2705 4.631813 GGTAGCATGGTTGTTCTAGTGAAG 59.368 45.833 1.12 0.00 32.15 3.02
2454 2706 4.357918 AGCATGGTTGTTCTAGTGAAGT 57.642 40.909 0.00 0.00 32.15 3.01
2455 2707 4.718961 AGCATGGTTGTTCTAGTGAAGTT 58.281 39.130 0.00 0.00 32.15 2.66
2456 2708 5.865085 AGCATGGTTGTTCTAGTGAAGTTA 58.135 37.500 0.00 0.00 32.15 2.24
2460 2712 7.571428 GCATGGTTGTTCTAGTGAAGTTACTTC 60.571 40.741 17.34 17.34 40.54 3.01
2476 2728 2.218603 ACTTCTGTTTCGGCGTTTGAT 58.781 42.857 6.85 0.00 0.00 2.57
2477 2729 2.032030 ACTTCTGTTTCGGCGTTTGATG 60.032 45.455 6.85 4.93 0.00 3.07
2479 2731 2.756829 TCTGTTTCGGCGTTTGATGTA 58.243 42.857 6.85 0.00 0.00 2.29
2483 2735 2.157834 TTCGGCGTTTGATGTACTGT 57.842 45.000 6.85 0.00 0.00 3.55
2522 2774 6.714356 GGCTCTTGCTGATCTAATAGGAAAAT 59.286 38.462 0.00 0.00 39.59 1.82
2523 2775 7.230309 GGCTCTTGCTGATCTAATAGGAAAATT 59.770 37.037 0.00 0.00 39.59 1.82
2535 2787 8.832735 TCTAATAGGAAAATTCTGGGTTAGTGT 58.167 33.333 0.00 0.00 0.00 3.55
2560 2812 1.541233 GGATGGTATGTTGCTAGCGCT 60.541 52.381 17.26 17.26 36.97 5.92
2590 2842 3.731867 GCTACATTTTGGTGATGCGAAGG 60.732 47.826 0.00 0.00 0.00 3.46
2591 2843 2.513753 ACATTTTGGTGATGCGAAGGA 58.486 42.857 0.00 0.00 0.00 3.36
2592 2844 3.091545 ACATTTTGGTGATGCGAAGGAT 58.908 40.909 0.00 0.00 45.36 3.24
2599 2851 4.737346 ATGCGAAGGATCCCCTCT 57.263 55.556 8.55 0.00 43.48 3.69
2600 2852 2.446512 ATGCGAAGGATCCCCTCTC 58.553 57.895 8.55 1.10 43.48 3.20
2614 2866 1.507174 CTCTCGTCGGAGGTTGGAC 59.493 63.158 0.00 0.00 40.85 4.02
2621 2873 2.543861 CGTCGGAGGTTGGACATATCAG 60.544 54.545 0.00 0.00 32.74 2.90
2638 2890 8.894768 ACATATCAGCAGGATAGTCTTAAAAC 57.105 34.615 4.70 0.00 41.64 2.43
2639 2891 8.709308 ACATATCAGCAGGATAGTCTTAAAACT 58.291 33.333 4.70 0.00 41.64 2.66
2643 2895 7.556844 TCAGCAGGATAGTCTTAAAACTAAGG 58.443 38.462 0.00 0.00 35.47 2.69
2644 2896 7.180408 TCAGCAGGATAGTCTTAAAACTAAGGT 59.820 37.037 0.00 0.00 35.47 3.50
2645 2897 7.492994 CAGCAGGATAGTCTTAAAACTAAGGTC 59.507 40.741 0.00 0.00 35.47 3.85
2646 2898 6.762187 GCAGGATAGTCTTAAAACTAAGGTCC 59.238 42.308 0.00 0.00 35.47 4.46
2647 2899 7.580882 GCAGGATAGTCTTAAAACTAAGGTCCA 60.581 40.741 8.94 0.00 33.59 4.02
2648 2900 8.487028 CAGGATAGTCTTAAAACTAAGGTCCAT 58.513 37.037 8.94 0.00 33.59 3.41
2649 2901 9.725206 AGGATAGTCTTAAAACTAAGGTCCATA 57.275 33.333 8.94 0.00 33.59 2.74
2684 2936 7.595819 AATTAAGGTCCATGAAAAGTTGTCA 57.404 32.000 0.00 0.00 0.00 3.58
2693 2945 7.227910 GTCCATGAAAAGTTGTCACTTACCTTA 59.772 37.037 0.00 0.00 42.89 2.69
2704 2956 4.335594 GTCACTTACCTTATCCAACCATGC 59.664 45.833 0.00 0.00 0.00 4.06
2708 2960 1.283613 ACCTTATCCAACCATGCGGAA 59.716 47.619 1.40 0.00 34.22 4.30
2723 2975 6.030228 CCATGCGGAAAATAGAACTTCTTTC 58.970 40.000 0.00 0.00 33.95 2.62
2724 2976 5.622770 TGCGGAAAATAGAACTTCTTTCC 57.377 39.130 9.46 9.46 42.21 3.13
2741 2993 1.221635 TCCCCTGAATATGGTGGTGG 58.778 55.000 0.00 0.00 0.00 4.61
2747 2999 1.064758 TGAATATGGTGGTGGCCAGTC 60.065 52.381 5.11 1.45 42.47 3.51
2748 3000 0.998928 AATATGGTGGTGGCCAGTCA 59.001 50.000 5.11 4.86 42.47 3.41
2749 3001 0.548031 ATATGGTGGTGGCCAGTCAG 59.452 55.000 5.11 0.00 42.47 3.51
2750 3002 0.546507 TATGGTGGTGGCCAGTCAGA 60.547 55.000 5.11 0.00 42.47 3.27
2751 3003 1.210204 ATGGTGGTGGCCAGTCAGAT 61.210 55.000 5.11 0.11 42.47 2.90
2752 3004 1.377725 GGTGGTGGCCAGTCAGATG 60.378 63.158 5.11 0.00 32.34 2.90
2756 3017 1.168714 GGTGGCCAGTCAGATGTTTC 58.831 55.000 5.11 0.00 0.00 2.78
2758 3019 2.508526 GTGGCCAGTCAGATGTTTCTT 58.491 47.619 5.11 0.00 0.00 2.52
2771 3032 9.139174 GTCAGATGTTTCTTTGTTTTCTTTGAA 57.861 29.630 0.00 0.00 0.00 2.69
2778 3039 7.608308 TTCTTTGTTTTCTTTGAAATGGTGG 57.392 32.000 0.00 0.00 0.00 4.61
2783 3044 6.514947 TGTTTTCTTTGAAATGGTGGATCAG 58.485 36.000 0.00 0.00 0.00 2.90
2787 3048 5.573219 TCTTTGAAATGGTGGATCAGATGT 58.427 37.500 0.00 0.00 0.00 3.06
2793 3054 7.118060 TGAAATGGTGGATCAGATGTTTGATA 58.882 34.615 0.00 0.00 37.90 2.15
2794 3055 7.283807 TGAAATGGTGGATCAGATGTTTGATAG 59.716 37.037 0.00 0.00 37.90 2.08
2796 3057 5.430886 TGGTGGATCAGATGTTTGATAGTG 58.569 41.667 0.00 0.00 37.90 2.74
2799 3064 5.236047 GTGGATCAGATGTTTGATAGTGAGC 59.764 44.000 0.00 0.00 37.90 4.26
2804 3069 3.197766 AGATGTTTGATAGTGAGCGGGAA 59.802 43.478 0.00 0.00 0.00 3.97
2808 3073 2.145397 TGATAGTGAGCGGGAAGTCT 57.855 50.000 0.00 0.00 0.00 3.24
2821 3086 3.435671 CGGGAAGTCTTGTGGAATTGTAC 59.564 47.826 0.00 0.00 32.03 2.90
2871 3140 4.134563 AGTAGTTAACTGCTTGGTGGTTG 58.865 43.478 19.23 0.00 35.32 3.77
2877 3146 0.595095 CTGCTTGGTGGTTGCTCTTC 59.405 55.000 0.00 0.00 0.00 2.87
2878 3147 1.165907 TGCTTGGTGGTTGCTCTTCG 61.166 55.000 0.00 0.00 0.00 3.79
2879 3148 0.884704 GCTTGGTGGTTGCTCTTCGA 60.885 55.000 0.00 0.00 0.00 3.71
2895 3164 1.040646 TCGAGCTGTTGAACTCTGGT 58.959 50.000 0.00 0.00 0.00 4.00
2896 3165 1.143305 CGAGCTGTTGAACTCTGGTG 58.857 55.000 0.00 0.00 0.00 4.17
2907 3176 6.183361 TGTTGAACTCTGGTGGTATCTGTTTA 60.183 38.462 0.00 0.00 0.00 2.01
2909 3178 6.406370 TGAACTCTGGTGGTATCTGTTTATG 58.594 40.000 0.00 0.00 0.00 1.90
2910 3179 6.212589 TGAACTCTGGTGGTATCTGTTTATGA 59.787 38.462 0.00 0.00 0.00 2.15
2911 3180 6.227298 ACTCTGGTGGTATCTGTTTATGAG 57.773 41.667 0.00 0.00 0.00 2.90
2915 3184 5.030147 TGGTGGTATCTGTTTATGAGGAGT 58.970 41.667 0.00 0.00 0.00 3.85
2924 3193 7.435068 TCTGTTTATGAGGAGTTAACTTTGC 57.565 36.000 10.02 2.83 0.00 3.68
2945 3214 7.857734 TTGCGAGTGGAAGATTATTTCATAA 57.142 32.000 0.00 0.00 0.00 1.90
2948 3217 6.853362 GCGAGTGGAAGATTATTTCATAAAGC 59.147 38.462 0.00 0.00 0.00 3.51
2951 3220 7.357471 AGTGGAAGATTATTTCATAAAGCCCT 58.643 34.615 0.00 0.00 0.00 5.19
2952 3221 7.841222 AGTGGAAGATTATTTCATAAAGCCCTT 59.159 33.333 0.00 0.00 0.00 3.95
2953 3222 8.138074 GTGGAAGATTATTTCATAAAGCCCTTC 58.862 37.037 0.00 0.00 0.00 3.46
2954 3223 7.287696 TGGAAGATTATTTCATAAAGCCCTTCC 59.712 37.037 0.00 0.00 39.01 3.46
2955 3224 7.255977 GGAAGATTATTTCATAAAGCCCTTCCC 60.256 40.741 0.00 0.00 36.49 3.97
2956 3225 6.927067 AGATTATTTCATAAAGCCCTTCCCT 58.073 36.000 0.00 0.00 0.00 4.20
2957 3226 6.779539 AGATTATTTCATAAAGCCCTTCCCTG 59.220 38.462 0.00 0.00 0.00 4.45
2958 3227 2.143876 TTCATAAAGCCCTTCCCTGC 57.856 50.000 0.00 0.00 0.00 4.85
2959 3228 1.298953 TCATAAAGCCCTTCCCTGCT 58.701 50.000 0.00 0.00 40.17 4.24
2960 3229 1.064463 TCATAAAGCCCTTCCCTGCTG 60.064 52.381 0.00 0.00 38.00 4.41
2961 3230 0.396278 ATAAAGCCCTTCCCTGCTGC 60.396 55.000 0.00 0.00 38.00 5.25
2962 3231 2.499303 TAAAGCCCTTCCCTGCTGCC 62.499 60.000 0.00 0.00 38.00 4.85
2967 3236 4.020617 CTTCCCTGCTGCCGGTGA 62.021 66.667 1.90 3.61 0.00 4.02
2968 3237 4.329545 TTCCCTGCTGCCGGTGAC 62.330 66.667 1.90 0.00 0.00 3.67
3236 3505 2.706636 CGTAGGATTGCCCCATGTG 58.293 57.895 0.00 0.00 34.66 3.21
3237 3506 0.107214 CGTAGGATTGCCCCATGTGT 60.107 55.000 0.00 0.00 34.66 3.72
3238 3507 1.140052 CGTAGGATTGCCCCATGTGTA 59.860 52.381 0.00 0.00 34.66 2.90
3239 3508 2.806745 CGTAGGATTGCCCCATGTGTAG 60.807 54.545 0.00 0.00 34.66 2.74
3240 3509 1.595311 AGGATTGCCCCATGTGTAGA 58.405 50.000 0.00 0.00 34.66 2.59
3241 3510 1.922447 AGGATTGCCCCATGTGTAGAA 59.078 47.619 0.00 0.00 34.66 2.10
3242 3511 2.024414 GGATTGCCCCATGTGTAGAAC 58.976 52.381 0.00 0.00 0.00 3.01
3243 3512 2.024414 GATTGCCCCATGTGTAGAACC 58.976 52.381 0.00 0.00 0.00 3.62
3244 3513 0.039035 TTGCCCCATGTGTAGAACCC 59.961 55.000 0.00 0.00 0.00 4.11
3245 3514 1.451387 GCCCCATGTGTAGAACCCG 60.451 63.158 0.00 0.00 0.00 5.28
3246 3515 1.451387 CCCCATGTGTAGAACCCGC 60.451 63.158 0.00 0.00 0.00 6.13
3247 3516 1.451387 CCCATGTGTAGAACCCGCC 60.451 63.158 0.00 0.00 0.00 6.13
3248 3517 1.451387 CCATGTGTAGAACCCGCCC 60.451 63.158 0.00 0.00 0.00 6.13
3249 3518 1.602237 CATGTGTAGAACCCGCCCT 59.398 57.895 0.00 0.00 0.00 5.19
3250 3519 0.035439 CATGTGTAGAACCCGCCCTT 60.035 55.000 0.00 0.00 0.00 3.95
3251 3520 0.252197 ATGTGTAGAACCCGCCCTTC 59.748 55.000 0.00 0.00 0.00 3.46
3252 3521 1.447314 GTGTAGAACCCGCCCTTCG 60.447 63.158 0.00 0.00 38.08 3.79
3271 3540 3.898509 TGCACAGCACGCCAAACC 61.899 61.111 0.00 0.00 31.71 3.27
3272 3541 3.898509 GCACAGCACGCCAAACCA 61.899 61.111 0.00 0.00 0.00 3.67
3273 3542 2.804167 CACAGCACGCCAAACCAA 59.196 55.556 0.00 0.00 0.00 3.67
3274 3543 1.140589 CACAGCACGCCAAACCAAA 59.859 52.632 0.00 0.00 0.00 3.28
3275 3544 0.249405 CACAGCACGCCAAACCAAAT 60.249 50.000 0.00 0.00 0.00 2.32
3276 3545 0.463620 ACAGCACGCCAAACCAAATT 59.536 45.000 0.00 0.00 0.00 1.82
3277 3546 1.139163 CAGCACGCCAAACCAAATTC 58.861 50.000 0.00 0.00 0.00 2.17
3278 3547 0.033366 AGCACGCCAAACCAAATTCC 59.967 50.000 0.00 0.00 0.00 3.01
3279 3548 0.249657 GCACGCCAAACCAAATTCCA 60.250 50.000 0.00 0.00 0.00 3.53
3280 3549 1.607767 GCACGCCAAACCAAATTCCAT 60.608 47.619 0.00 0.00 0.00 3.41
3281 3550 2.353208 GCACGCCAAACCAAATTCCATA 60.353 45.455 0.00 0.00 0.00 2.74
3282 3551 3.510719 CACGCCAAACCAAATTCCATAG 58.489 45.455 0.00 0.00 0.00 2.23
3283 3552 3.192422 CACGCCAAACCAAATTCCATAGA 59.808 43.478 0.00 0.00 0.00 1.98
3284 3553 3.829601 ACGCCAAACCAAATTCCATAGAA 59.170 39.130 0.00 0.00 36.15 2.10
3285 3554 4.082245 ACGCCAAACCAAATTCCATAGAAG 60.082 41.667 0.00 0.00 34.86 2.85
3286 3555 4.082245 CGCCAAACCAAATTCCATAGAAGT 60.082 41.667 0.00 0.00 34.86 3.01
3287 3556 5.410924 GCCAAACCAAATTCCATAGAAGTC 58.589 41.667 0.00 0.00 34.86 3.01
3288 3557 5.640732 CCAAACCAAATTCCATAGAAGTCG 58.359 41.667 0.00 0.00 34.86 4.18
3289 3558 5.414454 CCAAACCAAATTCCATAGAAGTCGA 59.586 40.000 0.00 0.00 34.86 4.20
3290 3559 6.072175 CCAAACCAAATTCCATAGAAGTCGAA 60.072 38.462 0.00 0.00 34.86 3.71
3291 3560 6.743575 AACCAAATTCCATAGAAGTCGAAG 57.256 37.500 0.00 0.00 34.86 3.79
3292 3561 4.636206 ACCAAATTCCATAGAAGTCGAAGC 59.364 41.667 0.00 0.00 34.86 3.86
3293 3562 4.035675 CCAAATTCCATAGAAGTCGAAGCC 59.964 45.833 0.00 0.00 34.86 4.35
3294 3563 4.487714 AATTCCATAGAAGTCGAAGCCA 57.512 40.909 0.00 0.00 34.86 4.75
3295 3564 3.973206 TTCCATAGAAGTCGAAGCCAA 57.027 42.857 0.00 0.00 0.00 4.52
3296 3565 3.973206 TCCATAGAAGTCGAAGCCAAA 57.027 42.857 0.00 0.00 0.00 3.28
3297 3566 4.280436 TCCATAGAAGTCGAAGCCAAAA 57.720 40.909 0.00 0.00 0.00 2.44
3298 3567 4.647611 TCCATAGAAGTCGAAGCCAAAAA 58.352 39.130 0.00 0.00 0.00 1.94
3299 3568 4.695455 TCCATAGAAGTCGAAGCCAAAAAG 59.305 41.667 0.00 0.00 0.00 2.27
3300 3569 4.695455 CCATAGAAGTCGAAGCCAAAAAGA 59.305 41.667 0.00 0.00 0.00 2.52
3301 3570 5.163814 CCATAGAAGTCGAAGCCAAAAAGAG 60.164 44.000 0.00 0.00 0.00 2.85
3302 3571 2.550180 AGAAGTCGAAGCCAAAAAGAGC 59.450 45.455 0.00 0.00 0.00 4.09
3303 3572 0.868406 AGTCGAAGCCAAAAAGAGCG 59.132 50.000 0.00 0.00 0.00 5.03
3304 3573 0.586802 GTCGAAGCCAAAAAGAGCGT 59.413 50.000 0.00 0.00 0.00 5.07
3305 3574 0.586319 TCGAAGCCAAAAAGAGCGTG 59.414 50.000 0.00 0.00 0.00 5.34
3306 3575 0.586319 CGAAGCCAAAAAGAGCGTGA 59.414 50.000 0.00 0.00 0.00 4.35
3307 3576 1.197721 CGAAGCCAAAAAGAGCGTGAT 59.802 47.619 0.00 0.00 0.00 3.06
3308 3577 2.589014 GAAGCCAAAAAGAGCGTGATG 58.411 47.619 0.00 0.00 0.00 3.07
3309 3578 0.242017 AGCCAAAAAGAGCGTGATGC 59.758 50.000 0.00 0.00 46.98 3.91
3319 3588 2.016961 GCGTGATGCTATGTGTGGG 58.983 57.895 0.00 0.00 41.73 4.61
3320 3589 0.461870 GCGTGATGCTATGTGTGGGA 60.462 55.000 0.00 0.00 41.73 4.37
3321 3590 1.290203 CGTGATGCTATGTGTGGGAC 58.710 55.000 0.00 0.00 0.00 4.46
3322 3591 1.405391 CGTGATGCTATGTGTGGGACA 60.405 52.381 0.00 0.00 39.53 4.02
3337 3606 4.380843 TGGGACACTGTTACATCCAATT 57.619 40.909 5.92 0.00 32.45 2.32
3338 3607 4.735369 TGGGACACTGTTACATCCAATTT 58.265 39.130 5.92 0.00 32.45 1.82
3339 3608 5.144100 TGGGACACTGTTACATCCAATTTT 58.856 37.500 5.92 0.00 32.45 1.82
3340 3609 5.600484 TGGGACACTGTTACATCCAATTTTT 59.400 36.000 5.92 0.00 32.45 1.94
3341 3610 5.925969 GGGACACTGTTACATCCAATTTTTG 59.074 40.000 5.92 0.00 32.45 2.44
3342 3611 6.462347 GGGACACTGTTACATCCAATTTTTGT 60.462 38.462 5.92 0.00 32.45 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.202545 GGTGCCTAATCGAGAGGGAAC 60.203 57.143 15.94 12.88 36.01 3.62
34 35 4.077184 AAGTGCGATTCCGGCGGA 62.077 61.111 27.46 27.46 36.06 5.54
35 36 3.564027 GAAGTGCGATTCCGGCGG 61.564 66.667 22.51 22.51 36.06 6.13
36 37 2.813474 TGAAGTGCGATTCCGGCG 60.813 61.111 0.00 0.00 36.06 6.46
37 38 1.970917 CTGTGAAGTGCGATTCCGGC 61.971 60.000 0.00 0.00 36.06 6.13
38 39 1.970917 GCTGTGAAGTGCGATTCCGG 61.971 60.000 0.00 0.00 36.06 5.14
45 46 4.374702 GCGTGGCTGTGAAGTGCG 62.375 66.667 0.00 0.00 0.00 5.34
82 83 8.565896 AACATGAATAGCTCATACACAAGAAA 57.434 30.769 0.00 0.00 43.28 2.52
95 97 7.633018 TCTAGGGGAAATAACATGAATAGCT 57.367 36.000 0.00 0.00 0.00 3.32
135 137 5.125097 AGCTGTTTTGCTTATCTCCTTCATG 59.875 40.000 0.00 0.00 40.93 3.07
144 146 7.114811 TCGAAAATTTGAGCTGTTTTGCTTATC 59.885 33.333 0.00 0.00 44.17 1.75
168 171 5.734498 CGCTTCTTATTTCCACAGAAAATCG 59.266 40.000 0.00 0.00 44.91 3.34
169 172 6.612306 ACGCTTCTTATTTCCACAGAAAATC 58.388 36.000 0.00 0.00 44.91 2.17
170 173 6.575162 ACGCTTCTTATTTCCACAGAAAAT 57.425 33.333 0.00 0.00 44.91 1.82
174 177 5.654603 TCTACGCTTCTTATTTCCACAGA 57.345 39.130 0.00 0.00 0.00 3.41
484 487 2.729360 GCGGGCAGTAACAAAATTTCAC 59.271 45.455 0.00 0.00 0.00 3.18
485 488 2.288518 GGCGGGCAGTAACAAAATTTCA 60.289 45.455 0.00 0.00 0.00 2.69
486 489 2.333926 GGCGGGCAGTAACAAAATTTC 58.666 47.619 0.00 0.00 0.00 2.17
487 490 1.001520 GGGCGGGCAGTAACAAAATTT 59.998 47.619 3.27 0.00 0.00 1.82
488 491 0.606096 GGGCGGGCAGTAACAAAATT 59.394 50.000 3.27 0.00 0.00 1.82
489 492 1.254975 GGGGCGGGCAGTAACAAAAT 61.255 55.000 3.27 0.00 0.00 1.82
490 493 1.904378 GGGGCGGGCAGTAACAAAA 60.904 57.895 3.27 0.00 0.00 2.44
491 494 2.282603 GGGGCGGGCAGTAACAAA 60.283 61.111 3.27 0.00 0.00 2.83
492 495 4.354162 GGGGGCGGGCAGTAACAA 62.354 66.667 3.27 0.00 0.00 2.83
536 539 2.698855 TTGTAATCTGCTCCTGCTCC 57.301 50.000 0.00 0.00 40.48 4.70
539 542 3.067320 GGGAAATTGTAATCTGCTCCTGC 59.933 47.826 0.00 0.00 40.20 4.85
559 562 3.119352 GGTTTCTGCAAATCTAGCAAGGG 60.119 47.826 0.00 0.00 42.17 3.95
572 575 2.093306 AATGATCGACGGTTTCTGCA 57.907 45.000 0.00 0.00 0.00 4.41
616 619 7.761704 GCAGAAGTATCAAGAGAACATAACAGA 59.238 37.037 0.00 0.00 0.00 3.41
624 627 7.332926 TCAATTCAGCAGAAGTATCAAGAGAAC 59.667 37.037 0.00 0.00 37.14 3.01
632 635 6.765036 TCCTTGATCAATTCAGCAGAAGTATC 59.235 38.462 8.96 1.62 37.14 2.24
633 636 6.656902 TCCTTGATCAATTCAGCAGAAGTAT 58.343 36.000 8.96 0.00 37.14 2.12
634 637 6.053632 TCCTTGATCAATTCAGCAGAAGTA 57.946 37.500 8.96 0.00 37.14 2.24
652 655 4.747810 AGCTGTTTTTCAGTGTTTCCTTG 58.252 39.130 0.00 0.00 45.23 3.61
662 665 6.890663 TTGAACATTTGAGCTGTTTTTCAG 57.109 33.333 0.00 0.00 46.12 3.02
665 668 8.183536 GGAAAATTGAACATTTGAGCTGTTTTT 58.816 29.630 0.00 0.00 36.98 1.94
691 694 6.538742 TGTCCAGTAAACTTCTGTTCTGAAAG 59.461 38.462 0.00 0.00 34.96 2.62
696 699 4.654262 TCCTGTCCAGTAAACTTCTGTTCT 59.346 41.667 0.00 0.00 34.96 3.01
697 700 4.957296 TCCTGTCCAGTAAACTTCTGTTC 58.043 43.478 0.00 0.00 34.96 3.18
698 701 5.123936 GTTCCTGTCCAGTAAACTTCTGTT 58.876 41.667 0.00 0.00 38.16 3.16
699 702 4.163458 TGTTCCTGTCCAGTAAACTTCTGT 59.837 41.667 9.70 0.00 0.00 3.41
757 760 6.515272 ACAACAATACAAGCATCTAAAGGG 57.485 37.500 0.00 0.00 0.00 3.95
827 832 1.815421 GATACTGGTGTGGCAGGCG 60.815 63.158 0.00 0.00 0.00 5.52
851 856 3.358707 ACACAACAACAGTCATGCATG 57.641 42.857 21.07 21.07 0.00 4.06
852 857 4.098349 AGAAACACAACAACAGTCATGCAT 59.902 37.500 0.00 0.00 0.00 3.96
853 858 3.443329 AGAAACACAACAACAGTCATGCA 59.557 39.130 0.00 0.00 0.00 3.96
854 859 3.792956 CAGAAACACAACAACAGTCATGC 59.207 43.478 0.00 0.00 0.00 4.06
886 891 0.249120 CAATCTCACAGCCCCGTGTA 59.751 55.000 0.00 0.00 38.12 2.90
896 901 5.535783 ACCAATTGATCAACACAATCTCACA 59.464 36.000 11.07 0.00 37.04 3.58
917 922 0.178992 CAGAACCAGGCTCCAAACCA 60.179 55.000 0.00 0.00 0.00 3.67
945 950 6.374053 TGCTTACTTGATATTGCTAGTTTGCA 59.626 34.615 0.00 0.00 41.65 4.08
970 975 6.126854 ACCAGAACTCAAAGTAACTACCACTT 60.127 38.462 0.00 0.00 37.85 3.16
991 996 2.717044 TACCGTCCATCGCCACCAG 61.717 63.158 0.00 0.00 38.35 4.00
999 1004 1.688772 TGGAGCTAGTACCGTCCATC 58.311 55.000 0.00 0.00 34.03 3.51
1005 1010 2.753452 TCTCTTGTTGGAGCTAGTACCG 59.247 50.000 0.00 0.00 33.70 4.02
1010 1015 3.993081 CAGTTGTCTCTTGTTGGAGCTAG 59.007 47.826 0.00 0.00 33.70 3.42
1028 1033 1.830477 CCTCTAGCTGAGCTTCCAGTT 59.170 52.381 14.14 1.17 41.35 3.16
1030 1035 0.752054 CCCTCTAGCTGAGCTTCCAG 59.248 60.000 14.14 3.97 41.35 3.86
1032 1037 1.039856 CTCCCTCTAGCTGAGCTTCC 58.960 60.000 14.14 0.00 41.35 3.46
1122 1127 1.964223 TGGAATATCGGAGGTCTGAGC 59.036 52.381 0.00 0.00 34.27 4.26
1156 1161 9.489084 GAGGACAAGTAAATATATGCATACACA 57.511 33.333 8.99 0.00 0.00 3.72
1183 1221 2.706190 ACTTTACAAGAGGCTGGTGTCT 59.294 45.455 0.00 0.00 0.00 3.41
1187 1225 2.550208 CCGAACTTTACAAGAGGCTGGT 60.550 50.000 0.00 0.00 0.00 4.00
1193 1231 8.263940 TCATTTTATCCCGAACTTTACAAGAG 57.736 34.615 0.00 0.00 0.00 2.85
1197 1235 8.673711 CAGATTCATTTTATCCCGAACTTTACA 58.326 33.333 0.00 0.00 0.00 2.41
1198 1236 8.674607 ACAGATTCATTTTATCCCGAACTTTAC 58.325 33.333 0.00 0.00 0.00 2.01
1204 1242 6.884295 AGACAACAGATTCATTTTATCCCGAA 59.116 34.615 0.00 0.00 0.00 4.30
1223 1459 2.673833 ACTAGCGTTACAGCAGACAAC 58.326 47.619 0.00 0.00 40.15 3.32
1225 1461 2.035449 ACAACTAGCGTTACAGCAGACA 59.965 45.455 0.00 0.00 40.15 3.41
1228 1464 2.672714 TGACAACTAGCGTTACAGCAG 58.327 47.619 0.00 0.00 40.15 4.24
1229 1465 2.804697 TGACAACTAGCGTTACAGCA 57.195 45.000 0.00 0.00 40.15 4.41
1231 1467 4.795268 TCTCTTGACAACTAGCGTTACAG 58.205 43.478 0.00 0.00 0.00 2.74
1236 1472 4.323553 AGTTTCTCTTGACAACTAGCGT 57.676 40.909 0.00 0.00 0.00 5.07
1237 1473 5.463724 AGAAAGTTTCTCTTGACAACTAGCG 59.536 40.000 12.50 0.00 34.07 4.26
1252 1488 8.530269 TCTAAGTATGTCCGAAAGAAAGTTTC 57.470 34.615 7.57 7.57 0.00 2.78
1256 1492 9.197694 CCATATCTAAGTATGTCCGAAAGAAAG 57.802 37.037 0.00 0.00 31.55 2.62
1263 1499 7.455891 TGTCTACCATATCTAAGTATGTCCGA 58.544 38.462 0.00 0.00 31.55 4.55
1264 1500 7.683437 TGTCTACCATATCTAAGTATGTCCG 57.317 40.000 0.00 0.00 31.55 4.79
1295 1531 9.708222 GAAGATACATTAGTACTGCACATTTTG 57.292 33.333 5.39 0.00 31.96 2.44
1296 1532 9.672673 AGAAGATACATTAGTACTGCACATTTT 57.327 29.630 5.39 0.00 31.96 1.82
1301 1537 8.879342 AATGAGAAGATACATTAGTACTGCAC 57.121 34.615 5.39 0.00 35.39 4.57
1313 1549 6.485984 GGAGTACTACGGAATGAGAAGATACA 59.514 42.308 0.00 0.00 0.00 2.29
1319 1555 4.079901 AGAGGGAGTACTACGGAATGAGAA 60.080 45.833 0.00 0.00 0.00 2.87
1321 1557 3.566322 CAGAGGGAGTACTACGGAATGAG 59.434 52.174 0.00 0.00 0.00 2.90
1322 1558 3.053842 ACAGAGGGAGTACTACGGAATGA 60.054 47.826 0.00 0.00 0.00 2.57
1324 1560 3.666345 ACAGAGGGAGTACTACGGAAT 57.334 47.619 0.00 0.00 0.00 3.01
1327 1563 4.012374 TGTTTACAGAGGGAGTACTACGG 58.988 47.826 0.00 0.00 0.00 4.02
1328 1564 5.831702 ATGTTTACAGAGGGAGTACTACG 57.168 43.478 0.00 0.00 0.00 3.51
1335 1571 7.971168 CGCTCTTATATATGTTTACAGAGGGAG 59.029 40.741 13.31 0.00 36.40 4.30
1336 1572 7.450634 ACGCTCTTATATATGTTTACAGAGGGA 59.549 37.037 20.58 0.00 37.30 4.20
1337 1573 7.603651 ACGCTCTTATATATGTTTACAGAGGG 58.396 38.462 15.53 15.53 38.95 4.30
1338 1574 9.477484 AAACGCTCTTATATATGTTTACAGAGG 57.523 33.333 0.00 2.15 0.00 3.69
1346 1582 9.640963 GGTGATCTAAACGCTCTTATATATGTT 57.359 33.333 0.00 0.00 0.00 2.71
1347 1583 8.803235 TGGTGATCTAAACGCTCTTATATATGT 58.197 33.333 0.00 0.00 0.00 2.29
1348 1584 9.077674 GTGGTGATCTAAACGCTCTTATATATG 57.922 37.037 0.00 0.00 0.00 1.78
1349 1585 9.026121 AGTGGTGATCTAAACGCTCTTATATAT 57.974 33.333 0.00 0.00 0.00 0.86
1350 1586 8.297426 CAGTGGTGATCTAAACGCTCTTATATA 58.703 37.037 0.00 0.00 0.00 0.86
1351 1587 7.014326 TCAGTGGTGATCTAAACGCTCTTATAT 59.986 37.037 0.00 0.00 0.00 0.86
1352 1588 6.320418 TCAGTGGTGATCTAAACGCTCTTATA 59.680 38.462 0.00 0.00 0.00 0.98
1353 1589 5.127194 TCAGTGGTGATCTAAACGCTCTTAT 59.873 40.000 0.00 0.00 0.00 1.73
1354 1590 4.461431 TCAGTGGTGATCTAAACGCTCTTA 59.539 41.667 0.00 0.00 0.00 2.10
1355 1591 3.258372 TCAGTGGTGATCTAAACGCTCTT 59.742 43.478 0.00 0.00 0.00 2.85
1356 1592 2.826128 TCAGTGGTGATCTAAACGCTCT 59.174 45.455 0.00 0.00 0.00 4.09
1357 1593 3.232213 TCAGTGGTGATCTAAACGCTC 57.768 47.619 0.00 0.00 0.00 5.03
1358 1594 3.006967 ACTTCAGTGGTGATCTAAACGCT 59.993 43.478 0.00 0.00 30.85 5.07
1359 1595 3.123621 CACTTCAGTGGTGATCTAAACGC 59.876 47.826 0.00 0.00 42.10 4.84
1360 1596 4.910746 CACTTCAGTGGTGATCTAAACG 57.089 45.455 0.00 0.00 42.10 3.60
1372 1608 5.300752 AGTGTTTAGATCACCACTTCAGTG 58.699 41.667 0.00 0.00 45.23 3.66
1373 1609 5.305644 AGAGTGTTTAGATCACCACTTCAGT 59.694 40.000 0.00 0.00 38.23 3.41
1374 1610 5.788450 AGAGTGTTTAGATCACCACTTCAG 58.212 41.667 0.00 0.00 38.23 3.02
1375 1611 5.808366 AGAGTGTTTAGATCACCACTTCA 57.192 39.130 0.00 0.00 38.23 3.02
1390 1626 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
1391 1627 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
1392 1628 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
1393 1629 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
1399 1635 9.892130 CAAAGTACTCCCTCTGTAAAGAAATAT 57.108 33.333 0.00 0.00 0.00 1.28
1400 1636 8.877195 ACAAAGTACTCCCTCTGTAAAGAAATA 58.123 33.333 0.00 0.00 0.00 1.40
1401 1637 7.746703 ACAAAGTACTCCCTCTGTAAAGAAAT 58.253 34.615 0.00 0.00 0.00 2.17
1402 1638 7.133133 ACAAAGTACTCCCTCTGTAAAGAAA 57.867 36.000 0.00 0.00 0.00 2.52
1403 1639 6.742559 ACAAAGTACTCCCTCTGTAAAGAA 57.257 37.500 0.00 0.00 0.00 2.52
1404 1640 6.742559 AACAAAGTACTCCCTCTGTAAAGA 57.257 37.500 0.00 0.00 0.00 2.52
1405 1641 7.803279 AAAACAAAGTACTCCCTCTGTAAAG 57.197 36.000 0.00 0.00 0.00 1.85
1406 1642 8.050930 AGAAAAACAAAGTACTCCCTCTGTAAA 58.949 33.333 0.00 0.00 0.00 2.01
1407 1643 7.497909 CAGAAAAACAAAGTACTCCCTCTGTAA 59.502 37.037 0.00 0.00 0.00 2.41
1408 1644 6.990349 CAGAAAAACAAAGTACTCCCTCTGTA 59.010 38.462 0.00 0.00 0.00 2.74
1409 1645 5.823045 CAGAAAAACAAAGTACTCCCTCTGT 59.177 40.000 0.00 0.00 0.00 3.41
1410 1646 5.823045 ACAGAAAAACAAAGTACTCCCTCTG 59.177 40.000 0.00 4.92 34.22 3.35
1411 1647 6.002653 ACAGAAAAACAAAGTACTCCCTCT 57.997 37.500 0.00 0.00 0.00 3.69
1412 1648 5.050295 CGACAGAAAAACAAAGTACTCCCTC 60.050 44.000 0.00 0.00 0.00 4.30
1413 1649 4.814771 CGACAGAAAAACAAAGTACTCCCT 59.185 41.667 0.00 0.00 0.00 4.20
1414 1650 4.554134 GCGACAGAAAAACAAAGTACTCCC 60.554 45.833 0.00 0.00 0.00 4.30
1415 1651 4.034742 TGCGACAGAAAAACAAAGTACTCC 59.965 41.667 0.00 0.00 0.00 3.85
1416 1652 5.151632 TGCGACAGAAAAACAAAGTACTC 57.848 39.130 0.00 0.00 0.00 2.59
1417 1653 5.123344 ACTTGCGACAGAAAAACAAAGTACT 59.877 36.000 0.00 0.00 0.00 2.73
1418 1654 5.329493 ACTTGCGACAGAAAAACAAAGTAC 58.671 37.500 0.00 0.00 0.00 2.73
1419 1655 5.554822 ACTTGCGACAGAAAAACAAAGTA 57.445 34.783 0.00 0.00 0.00 2.24
1420 1656 4.434713 ACTTGCGACAGAAAAACAAAGT 57.565 36.364 0.00 0.00 0.00 2.66
1421 1657 6.560251 GCATAACTTGCGACAGAAAAACAAAG 60.560 38.462 0.00 0.00 42.54 2.77
1450 1686 2.708325 AGAAAAGAACAGGGCTCTCACT 59.292 45.455 0.00 0.00 0.00 3.41
1451 1687 2.810852 CAGAAAAGAACAGGGCTCTCAC 59.189 50.000 0.00 0.00 0.00 3.51
1457 1693 2.306847 TGGAACAGAAAAGAACAGGGC 58.693 47.619 0.00 0.00 0.00 5.19
1472 1709 1.248486 GCCCCAAAGAAGACTGGAAC 58.752 55.000 0.00 0.00 34.35 3.62
1480 1724 4.100498 AGCATATGAAATGCCCCAAAGAAG 59.900 41.667 6.97 0.00 45.59 2.85
1515 1759 2.103373 CTTCTTGTCCAGGATCTCGGA 58.897 52.381 0.00 0.00 0.00 4.55
1571 1815 2.762327 GACATGTTCCATCCCAAAGCAT 59.238 45.455 0.00 0.00 0.00 3.79
1593 1837 3.482156 AGCAACAGTGACTGACTTGAT 57.518 42.857 20.97 10.19 35.18 2.57
1651 1895 6.178324 TCGTGTTCTTCCTTCTGATAGTAGA 58.822 40.000 0.00 0.00 0.00 2.59
2081 2332 5.478332 ACCATTTCCTTCATCAGAAACCTTC 59.522 40.000 0.00 0.00 34.97 3.46
2129 2380 2.553079 AGAAAACGTTGCGCTTTTCA 57.447 40.000 25.25 0.00 38.25 2.69
2131 2382 4.217754 TCATAGAAAACGTTGCGCTTTT 57.782 36.364 9.73 6.90 0.00 2.27
2141 2392 6.828502 TCAGAATCGGAATCATAGAAAACG 57.171 37.500 0.00 0.00 0.00 3.60
2144 2395 8.206867 ACTTCATCAGAATCGGAATCATAGAAA 58.793 33.333 0.00 0.00 32.31 2.52
2147 2398 7.543868 GGTACTTCATCAGAATCGGAATCATAG 59.456 40.741 0.00 0.00 32.31 2.23
2156 2407 3.493350 CCCTGGGTACTTCATCAGAATCG 60.493 52.174 3.97 0.00 32.31 3.34
2170 2421 1.619807 GCGACCTAAAGCCCTGGGTA 61.620 60.000 15.56 0.00 31.60 3.69
2173 2424 1.450312 CTGCGACCTAAAGCCCTGG 60.450 63.158 0.00 0.00 0.00 4.45
2177 2428 2.095212 CCTTTTTCTGCGACCTAAAGCC 60.095 50.000 0.00 0.00 0.00 4.35
2192 2443 1.831106 GGATTCCGGCCATTCCTTTTT 59.169 47.619 2.24 0.00 0.00 1.94
2196 2447 0.988145 TCAGGATTCCGGCCATTCCT 60.988 55.000 2.24 5.18 39.18 3.36
2198 2449 1.610522 CAATCAGGATTCCGGCCATTC 59.389 52.381 2.24 0.00 0.00 2.67
2206 2457 4.140536 GGGATCAGAACAATCAGGATTCC 58.859 47.826 0.00 0.00 33.02 3.01
2214 2465 5.278364 GCTCATGATTGGGATCAGAACAATC 60.278 44.000 17.53 17.53 45.01 2.67
2217 2468 3.548770 GCTCATGATTGGGATCAGAACA 58.451 45.455 0.00 0.00 45.01 3.18
2218 2469 2.547211 CGCTCATGATTGGGATCAGAAC 59.453 50.000 0.00 0.00 45.01 3.01
2228 2479 1.209128 GTACGGGTCGCTCATGATTG 58.791 55.000 0.00 0.00 0.00 2.67
2231 2482 2.420568 GGGTACGGGTCGCTCATGA 61.421 63.158 0.00 0.00 0.00 3.07
2243 2494 2.257409 ATCTGGCAGCCAAGGGTACG 62.257 60.000 17.03 1.41 30.80 3.67
2279 2530 1.272781 GCCGTTCATCTTCAGACTCG 58.727 55.000 0.00 0.00 0.00 4.18
2303 2554 1.549203 TTTTGGAGAATCTGGCAGCC 58.451 50.000 10.34 3.66 33.73 4.85
2324 2575 2.333926 CTTCAGCGTTCATAACCACGA 58.666 47.619 0.00 0.00 38.76 4.35
2325 2576 1.393539 CCTTCAGCGTTCATAACCACG 59.606 52.381 0.00 0.00 39.49 4.94
2327 2578 2.811431 CAACCTTCAGCGTTCATAACCA 59.189 45.455 0.00 0.00 0.00 3.67
2339 2590 0.518636 CACATGTCCGCAACCTTCAG 59.481 55.000 0.00 0.00 0.00 3.02
2349 2600 3.307674 CAACCACAAAATCACATGTCCG 58.692 45.455 0.00 0.00 0.00 4.79
2358 2609 2.289010 CCCTGAAGCCAACCACAAAATC 60.289 50.000 0.00 0.00 0.00 2.17
2359 2610 1.693606 CCCTGAAGCCAACCACAAAAT 59.306 47.619 0.00 0.00 0.00 1.82
2364 2615 1.119684 AAAACCCTGAAGCCAACCAC 58.880 50.000 0.00 0.00 0.00 4.16
2365 2616 1.118838 CAAAACCCTGAAGCCAACCA 58.881 50.000 0.00 0.00 0.00 3.67
2372 2624 1.963515 CCTGGAACCAAAACCCTGAAG 59.036 52.381 0.00 0.00 0.00 3.02
2378 2630 8.088365 GCATAATAATATCCTGGAACCAAAACC 58.912 37.037 0.00 0.00 0.00 3.27
2390 2642 7.482169 TTGAGACTCGGCATAATAATATCCT 57.518 36.000 0.00 0.00 0.00 3.24
2397 2649 7.611855 TCTGAGATATTGAGACTCGGCATAATA 59.388 37.037 0.00 0.00 37.08 0.98
2398 2650 6.435591 TCTGAGATATTGAGACTCGGCATAAT 59.564 38.462 0.00 0.00 37.08 1.28
2399 2651 5.770162 TCTGAGATATTGAGACTCGGCATAA 59.230 40.000 0.00 0.00 37.08 1.90
2401 2653 4.022416 GTCTGAGATATTGAGACTCGGCAT 60.022 45.833 0.00 0.00 37.08 4.40
2403 2655 3.305064 GGTCTGAGATATTGAGACTCGGC 60.305 52.174 0.00 0.00 37.00 5.54
2404 2656 4.141287 AGGTCTGAGATATTGAGACTCGG 58.859 47.826 0.00 0.00 37.00 4.63
2405 2657 5.530915 AGAAGGTCTGAGATATTGAGACTCG 59.469 44.000 0.00 0.00 37.00 4.18
2406 2658 6.959639 AGAAGGTCTGAGATATTGAGACTC 57.040 41.667 0.00 0.00 37.00 3.36
2424 2676 2.496899 ACAACCATGCTACCAGAAGG 57.503 50.000 0.00 0.00 42.21 3.46
2425 2677 3.679389 AGAACAACCATGCTACCAGAAG 58.321 45.455 0.00 0.00 0.00 2.85
2426 2678 3.788227 AGAACAACCATGCTACCAGAA 57.212 42.857 0.00 0.00 0.00 3.02
2427 2679 3.838317 ACTAGAACAACCATGCTACCAGA 59.162 43.478 0.00 0.00 0.00 3.86
2428 2680 3.935203 CACTAGAACAACCATGCTACCAG 59.065 47.826 0.00 0.00 0.00 4.00
2429 2681 3.580895 TCACTAGAACAACCATGCTACCA 59.419 43.478 0.00 0.00 0.00 3.25
2430 2682 4.202245 TCACTAGAACAACCATGCTACC 57.798 45.455 0.00 0.00 0.00 3.18
2432 2684 5.483685 ACTTCACTAGAACAACCATGCTA 57.516 39.130 0.00 0.00 0.00 3.49
2433 2685 4.357918 ACTTCACTAGAACAACCATGCT 57.642 40.909 0.00 0.00 0.00 3.79
2435 2687 7.657761 AGAAGTAACTTCACTAGAACAACCATG 59.342 37.037 0.00 0.00 42.37 3.66
2436 2688 7.657761 CAGAAGTAACTTCACTAGAACAACCAT 59.342 37.037 0.00 0.00 42.37 3.55
2437 2689 6.984474 CAGAAGTAACTTCACTAGAACAACCA 59.016 38.462 0.00 0.00 42.37 3.67
2438 2690 6.985059 ACAGAAGTAACTTCACTAGAACAACC 59.015 38.462 0.00 0.00 42.37 3.77
2439 2691 8.421673 AACAGAAGTAACTTCACTAGAACAAC 57.578 34.615 0.00 0.00 42.37 3.32
2441 2693 7.434307 CGAAACAGAAGTAACTTCACTAGAACA 59.566 37.037 0.00 0.00 42.37 3.18
2443 2695 6.921857 CCGAAACAGAAGTAACTTCACTAGAA 59.078 38.462 0.00 0.00 42.37 2.10
2445 2697 5.118817 GCCGAAACAGAAGTAACTTCACTAG 59.881 44.000 0.00 0.00 42.37 2.57
2446 2698 4.986659 GCCGAAACAGAAGTAACTTCACTA 59.013 41.667 0.00 0.00 42.37 2.74
2448 2700 3.362693 CGCCGAAACAGAAGTAACTTCAC 60.363 47.826 0.00 0.00 42.37 3.18
2449 2701 2.798283 CGCCGAAACAGAAGTAACTTCA 59.202 45.455 0.00 0.00 42.37 3.02
2450 2702 2.798847 ACGCCGAAACAGAAGTAACTTC 59.201 45.455 0.00 0.00 40.45 3.01
2451 2703 2.830104 ACGCCGAAACAGAAGTAACTT 58.170 42.857 0.00 0.00 0.00 2.66
2452 2704 2.521105 ACGCCGAAACAGAAGTAACT 57.479 45.000 0.00 0.00 0.00 2.24
2453 2705 3.001533 TCAAACGCCGAAACAGAAGTAAC 59.998 43.478 0.00 0.00 0.00 2.50
2454 2706 3.196463 TCAAACGCCGAAACAGAAGTAA 58.804 40.909 0.00 0.00 0.00 2.24
2455 2707 2.823984 TCAAACGCCGAAACAGAAGTA 58.176 42.857 0.00 0.00 0.00 2.24
2456 2708 1.658994 TCAAACGCCGAAACAGAAGT 58.341 45.000 0.00 0.00 0.00 3.01
2460 2712 2.478894 AGTACATCAAACGCCGAAACAG 59.521 45.455 0.00 0.00 0.00 3.16
2476 2728 4.063967 CGGCCCTGCGACAGTACA 62.064 66.667 0.00 0.00 0.00 2.90
2477 2729 4.065281 ACGGCCCTGCGACAGTAC 62.065 66.667 0.00 0.00 0.00 2.73
2501 2753 8.566260 CCAGAATTTTCCTATTAGATCAGCAAG 58.434 37.037 0.00 0.00 0.00 4.01
2522 2774 1.771854 TCCAGCAACACTAACCCAGAA 59.228 47.619 0.00 0.00 0.00 3.02
2523 2775 1.429930 TCCAGCAACACTAACCCAGA 58.570 50.000 0.00 0.00 0.00 3.86
2535 2787 2.512692 AGCAACATACCATCCAGCAA 57.487 45.000 0.00 0.00 0.00 3.91
2560 2812 6.680810 CATCACCAAAATGTAGCTCAGAAAA 58.319 36.000 0.00 0.00 0.00 2.29
2590 2842 3.752704 CTCCGACGAGAGGGGATC 58.247 66.667 0.00 0.00 38.52 3.36
2599 2851 1.679680 GATATGTCCAACCTCCGACGA 59.320 52.381 0.00 0.00 0.00 4.20
2600 2852 1.407618 TGATATGTCCAACCTCCGACG 59.592 52.381 0.00 0.00 0.00 5.12
2621 2873 6.762187 GGACCTTAGTTTTAAGACTATCCTGC 59.238 42.308 13.38 2.89 38.88 4.85
2657 2909 9.325198 GACAACTTTTCATGGACCTTAATTTTT 57.675 29.630 0.00 0.00 0.00 1.94
2658 2910 8.482128 TGACAACTTTTCATGGACCTTAATTTT 58.518 29.630 0.00 0.00 0.00 1.82
2659 2911 7.926018 GTGACAACTTTTCATGGACCTTAATTT 59.074 33.333 0.00 0.00 0.00 1.82
2660 2912 7.287696 AGTGACAACTTTTCATGGACCTTAATT 59.712 33.333 0.00 0.00 30.14 1.40
2661 2913 6.777580 AGTGACAACTTTTCATGGACCTTAAT 59.222 34.615 0.00 0.00 30.14 1.40
2662 2914 6.126409 AGTGACAACTTTTCATGGACCTTAA 58.874 36.000 0.00 0.00 30.14 1.85
2679 2931 5.570205 TGGTTGGATAAGGTAAGTGACAA 57.430 39.130 0.00 0.00 0.00 3.18
2680 2932 5.496556 CATGGTTGGATAAGGTAAGTGACA 58.503 41.667 0.00 0.00 0.00 3.58
2684 2936 3.541632 CGCATGGTTGGATAAGGTAAGT 58.458 45.455 0.00 0.00 0.00 2.24
2693 2945 3.897239 TCTATTTTCCGCATGGTTGGAT 58.103 40.909 0.00 0.00 33.42 3.41
2704 2956 5.123979 CAGGGGAAAGAAGTTCTATTTTCCG 59.876 44.000 20.91 9.72 46.02 4.30
2708 2960 9.413734 CATATTCAGGGGAAAGAAGTTCTATTT 57.586 33.333 5.65 0.00 36.43 1.40
2723 2975 0.468029 GCCACCACCATATTCAGGGG 60.468 60.000 0.00 0.00 0.00 4.79
2724 2976 0.468029 GGCCACCACCATATTCAGGG 60.468 60.000 0.00 0.00 0.00 4.45
2741 2993 4.574599 AACAAAGAAACATCTGACTGGC 57.425 40.909 0.00 0.00 0.00 4.85
2749 3001 9.706846 CCATTTCAAAGAAAACAAAGAAACATC 57.293 29.630 0.00 0.00 0.00 3.06
2750 3002 9.230122 ACCATTTCAAAGAAAACAAAGAAACAT 57.770 25.926 0.00 0.00 0.00 2.71
2751 3003 8.502387 CACCATTTCAAAGAAAACAAAGAAACA 58.498 29.630 0.00 0.00 0.00 2.83
2752 3004 7.962373 CCACCATTTCAAAGAAAACAAAGAAAC 59.038 33.333 0.00 0.00 0.00 2.78
2756 3017 7.495279 TGATCCACCATTTCAAAGAAAACAAAG 59.505 33.333 0.00 0.00 0.00 2.77
2758 3019 6.882656 TGATCCACCATTTCAAAGAAAACAA 58.117 32.000 0.00 0.00 0.00 2.83
2771 3032 6.544931 CACTATCAAACATCTGATCCACCATT 59.455 38.462 0.00 0.00 37.27 3.16
2778 3039 4.447054 CCGCTCACTATCAAACATCTGATC 59.553 45.833 0.00 0.00 37.27 2.92
2783 3044 3.179443 TCCCGCTCACTATCAAACATC 57.821 47.619 0.00 0.00 0.00 3.06
2787 3048 2.832129 AGACTTCCCGCTCACTATCAAA 59.168 45.455 0.00 0.00 0.00 2.69
2793 3054 0.034059 CACAAGACTTCCCGCTCACT 59.966 55.000 0.00 0.00 0.00 3.41
2794 3055 0.951040 CCACAAGACTTCCCGCTCAC 60.951 60.000 0.00 0.00 0.00 3.51
2796 3057 0.034896 TTCCACAAGACTTCCCGCTC 59.965 55.000 0.00 0.00 0.00 5.03
2799 3064 2.504367 ACAATTCCACAAGACTTCCCG 58.496 47.619 0.00 0.00 0.00 5.14
2877 3146 1.143305 CACCAGAGTTCAACAGCTCG 58.857 55.000 0.00 0.00 36.88 5.03
2878 3147 1.202698 ACCACCAGAGTTCAACAGCTC 60.203 52.381 0.00 0.00 0.00 4.09
2879 3148 0.839946 ACCACCAGAGTTCAACAGCT 59.160 50.000 0.00 0.00 0.00 4.24
2891 3160 5.129485 ACTCCTCATAAACAGATACCACCAG 59.871 44.000 0.00 0.00 0.00 4.00
2895 3164 8.375493 AGTTAACTCCTCATAAACAGATACCA 57.625 34.615 1.12 0.00 0.00 3.25
2896 3165 9.668497 AAAGTTAACTCCTCATAAACAGATACC 57.332 33.333 8.95 0.00 0.00 2.73
2907 3176 3.997021 CACTCGCAAAGTTAACTCCTCAT 59.003 43.478 8.95 0.00 35.45 2.90
2909 3178 2.737252 CCACTCGCAAAGTTAACTCCTC 59.263 50.000 8.95 0.02 35.45 3.71
2910 3179 2.367567 TCCACTCGCAAAGTTAACTCCT 59.632 45.455 8.95 0.00 35.45 3.69
2911 3180 2.762745 TCCACTCGCAAAGTTAACTCC 58.237 47.619 8.95 0.00 35.45 3.85
2915 3184 7.681939 AATAATCTTCCACTCGCAAAGTTAA 57.318 32.000 0.00 0.00 35.45 2.01
2924 3193 7.355778 GGCTTTATGAAATAATCTTCCACTCG 58.644 38.462 0.00 0.00 38.83 4.18
2945 3214 4.372999 GGCAGCAGGGAAGGGCTT 62.373 66.667 0.00 0.00 38.56 4.35
2951 3220 4.329545 GTCACCGGCAGCAGGGAA 62.330 66.667 16.74 0.03 0.00 3.97
3218 3487 0.107214 ACACATGGGGCAATCCTACG 60.107 55.000 0.00 0.00 35.33 3.51
3219 3488 2.438021 TCTACACATGGGGCAATCCTAC 59.562 50.000 0.00 0.00 35.33 3.18
3220 3489 2.770447 TCTACACATGGGGCAATCCTA 58.230 47.619 0.00 0.00 35.33 2.94
3221 3490 1.595311 TCTACACATGGGGCAATCCT 58.405 50.000 0.00 0.00 35.33 3.24
3222 3491 2.024414 GTTCTACACATGGGGCAATCC 58.976 52.381 0.00 0.00 0.00 3.01
3223 3492 2.024414 GGTTCTACACATGGGGCAATC 58.976 52.381 0.00 0.00 0.00 2.67
3224 3493 1.341976 GGGTTCTACACATGGGGCAAT 60.342 52.381 0.00 0.00 0.00 3.56
3225 3494 0.039035 GGGTTCTACACATGGGGCAA 59.961 55.000 0.00 0.00 0.00 4.52
3226 3495 1.688811 GGGTTCTACACATGGGGCA 59.311 57.895 0.00 0.00 0.00 5.36
3227 3496 1.451387 CGGGTTCTACACATGGGGC 60.451 63.158 0.00 0.00 0.00 5.80
3228 3497 1.451387 GCGGGTTCTACACATGGGG 60.451 63.158 0.00 0.00 0.00 4.96
3229 3498 1.451387 GGCGGGTTCTACACATGGG 60.451 63.158 0.00 0.00 0.00 4.00
3230 3499 1.451387 GGGCGGGTTCTACACATGG 60.451 63.158 0.00 0.00 0.00 3.66
3231 3500 0.035439 AAGGGCGGGTTCTACACATG 60.035 55.000 0.00 0.00 0.00 3.21
3232 3501 0.252197 GAAGGGCGGGTTCTACACAT 59.748 55.000 0.00 0.00 0.00 3.21
3233 3502 1.675219 GAAGGGCGGGTTCTACACA 59.325 57.895 0.00 0.00 0.00 3.72
3234 3503 1.447314 CGAAGGGCGGGTTCTACAC 60.447 63.158 0.00 0.00 36.03 2.90
3235 3504 2.975536 CGAAGGGCGGGTTCTACA 59.024 61.111 0.00 0.00 36.03 2.74
3254 3523 3.898509 GGTTTGGCGTGCTGTGCA 61.899 61.111 0.00 0.00 35.60 4.57
3255 3524 2.897641 TTTGGTTTGGCGTGCTGTGC 62.898 55.000 0.00 0.00 0.00 4.57
3256 3525 0.249405 ATTTGGTTTGGCGTGCTGTG 60.249 50.000 0.00 0.00 0.00 3.66
3257 3526 0.463620 AATTTGGTTTGGCGTGCTGT 59.536 45.000 0.00 0.00 0.00 4.40
3258 3527 1.139163 GAATTTGGTTTGGCGTGCTG 58.861 50.000 0.00 0.00 0.00 4.41
3259 3528 0.033366 GGAATTTGGTTTGGCGTGCT 59.967 50.000 0.00 0.00 0.00 4.40
3260 3529 0.249657 TGGAATTTGGTTTGGCGTGC 60.250 50.000 0.00 0.00 0.00 5.34
3261 3530 2.453983 ATGGAATTTGGTTTGGCGTG 57.546 45.000 0.00 0.00 0.00 5.34
3262 3531 3.426615 TCTATGGAATTTGGTTTGGCGT 58.573 40.909 0.00 0.00 0.00 5.68
3263 3532 4.082245 ACTTCTATGGAATTTGGTTTGGCG 60.082 41.667 0.00 0.00 0.00 5.69
3264 3533 5.405935 ACTTCTATGGAATTTGGTTTGGC 57.594 39.130 0.00 0.00 0.00 4.52
3265 3534 5.414454 TCGACTTCTATGGAATTTGGTTTGG 59.586 40.000 0.00 0.00 0.00 3.28
3266 3535 6.494893 TCGACTTCTATGGAATTTGGTTTG 57.505 37.500 0.00 0.00 0.00 2.93
3267 3536 6.349363 GCTTCGACTTCTATGGAATTTGGTTT 60.349 38.462 0.00 0.00 0.00 3.27
3268 3537 5.123979 GCTTCGACTTCTATGGAATTTGGTT 59.876 40.000 0.00 0.00 0.00 3.67
3269 3538 4.636206 GCTTCGACTTCTATGGAATTTGGT 59.364 41.667 0.00 0.00 0.00 3.67
3270 3539 4.035675 GGCTTCGACTTCTATGGAATTTGG 59.964 45.833 0.00 0.00 0.00 3.28
3271 3540 4.635765 TGGCTTCGACTTCTATGGAATTTG 59.364 41.667 0.00 0.00 0.00 2.32
3272 3541 4.843728 TGGCTTCGACTTCTATGGAATTT 58.156 39.130 0.00 0.00 0.00 1.82
3273 3542 4.487714 TGGCTTCGACTTCTATGGAATT 57.512 40.909 0.00 0.00 0.00 2.17
3274 3543 4.487714 TTGGCTTCGACTTCTATGGAAT 57.512 40.909 0.00 0.00 0.00 3.01
3275 3544 3.973206 TTGGCTTCGACTTCTATGGAA 57.027 42.857 0.00 0.00 0.00 3.53
3276 3545 3.973206 TTTGGCTTCGACTTCTATGGA 57.027 42.857 0.00 0.00 0.00 3.41
3277 3546 4.695455 TCTTTTTGGCTTCGACTTCTATGG 59.305 41.667 0.00 0.00 0.00 2.74
3278 3547 5.672321 GCTCTTTTTGGCTTCGACTTCTATG 60.672 44.000 0.00 0.00 0.00 2.23
3279 3548 4.393371 GCTCTTTTTGGCTTCGACTTCTAT 59.607 41.667 0.00 0.00 0.00 1.98
3280 3549 3.746492 GCTCTTTTTGGCTTCGACTTCTA 59.254 43.478 0.00 0.00 0.00 2.10
3281 3550 2.550180 GCTCTTTTTGGCTTCGACTTCT 59.450 45.455 0.00 0.00 0.00 2.85
3282 3551 2.663063 CGCTCTTTTTGGCTTCGACTTC 60.663 50.000 0.00 0.00 0.00 3.01
3283 3552 1.264288 CGCTCTTTTTGGCTTCGACTT 59.736 47.619 0.00 0.00 0.00 3.01
3284 3553 0.868406 CGCTCTTTTTGGCTTCGACT 59.132 50.000 0.00 0.00 0.00 4.18
3285 3554 0.586802 ACGCTCTTTTTGGCTTCGAC 59.413 50.000 0.00 0.00 0.00 4.20
3286 3555 0.586319 CACGCTCTTTTTGGCTTCGA 59.414 50.000 0.00 0.00 0.00 3.71
3287 3556 0.586319 TCACGCTCTTTTTGGCTTCG 59.414 50.000 0.00 0.00 0.00 3.79
3288 3557 2.589014 CATCACGCTCTTTTTGGCTTC 58.411 47.619 0.00 0.00 0.00 3.86
3289 3558 1.336240 GCATCACGCTCTTTTTGGCTT 60.336 47.619 0.00 0.00 37.77 4.35
3290 3559 0.242017 GCATCACGCTCTTTTTGGCT 59.758 50.000 0.00 0.00 37.77 4.75
3291 3560 2.729378 GCATCACGCTCTTTTTGGC 58.271 52.632 0.00 0.00 37.77 4.52
3301 3570 0.461870 TCCCACACATAGCATCACGC 60.462 55.000 0.00 0.00 42.91 5.34
3302 3571 1.290203 GTCCCACACATAGCATCACG 58.710 55.000 0.00 0.00 0.00 4.35
3303 3572 2.401583 TGTCCCACACATAGCATCAC 57.598 50.000 0.00 0.00 0.00 3.06
3314 3583 2.050918 TGGATGTAACAGTGTCCCACA 58.949 47.619 0.00 1.86 36.74 4.17
3315 3584 2.851263 TGGATGTAACAGTGTCCCAC 57.149 50.000 0.00 0.00 34.10 4.61
3316 3585 4.380843 AATTGGATGTAACAGTGTCCCA 57.619 40.909 0.00 0.00 0.00 4.37
3317 3586 5.722021 AAAATTGGATGTAACAGTGTCCC 57.278 39.130 0.00 0.00 0.00 4.46
3318 3587 6.512297 ACAAAAATTGGATGTAACAGTGTCC 58.488 36.000 0.00 0.00 34.12 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.