Multiple sequence alignment - TraesCS3D01G029300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G029300 chr3D 100.000 3281 0 0 1 3281 10642209 10645489 0.000000e+00 6059.0
1 TraesCS3D01G029300 chr3D 91.498 741 48 6 952 1691 10376678 10375952 0.000000e+00 1005.0
2 TraesCS3D01G029300 chr3D 95.866 387 16 0 1683 2069 10366125 10365739 7.730000e-176 627.0
3 TraesCS3D01G029300 chr3D 77.211 667 62 49 347 961 10377769 10377141 1.140000e-79 307.0
4 TraesCS3D01G029300 chr3D 74.769 325 66 12 1332 1648 10531725 10532041 7.390000e-27 132.0
5 TraesCS3D01G029300 chr3D 92.453 53 4 0 347 399 591666755 591666807 3.510000e-10 76.8
6 TraesCS3D01G029300 chr3A 91.678 2199 133 21 639 2812 17623141 17620968 0.000000e+00 3001.0
7 TraesCS3D01G029300 chr3A 80.402 796 149 5 1249 2043 16458027 16457238 1.680000e-167 599.0
8 TraesCS3D01G029300 chr3A 90.000 130 11 2 3143 3271 17620454 17620326 2.030000e-37 167.0
9 TraesCS3D01G029300 chr3A 93.878 49 2 1 790 837 723648047 723647999 4.540000e-09 73.1
10 TraesCS3D01G029300 chr3B 92.885 2038 120 13 727 2756 26588776 26586756 0.000000e+00 2937.0
11 TraesCS3D01G029300 chr3B 88.149 616 51 12 639 1241 15053406 15054012 0.000000e+00 713.0
12 TraesCS3D01G029300 chr3B 86.976 453 49 5 1247 1692 15054062 15054511 4.890000e-138 501.0
13 TraesCS3D01G029300 chr3B 95.089 224 11 0 36 259 14708606 14708829 1.450000e-93 353.0
14 TraesCS3D01G029300 chr3B 79.560 318 22 18 347 638 15053073 15053373 1.550000e-43 187.0
15 TraesCS3D01G029300 chr3B 78.683 319 23 12 347 642 26589170 26588874 1.570000e-38 171.0
16 TraesCS3D01G029300 chr3B 86.364 154 18 3 349 501 14708976 14709127 7.280000e-37 165.0
17 TraesCS3D01G029300 chr3B 85.526 76 9 2 46 119 4501423 4501348 9.760000e-11 78.7
18 TraesCS3D01G029300 chr3B 97.778 45 1 0 794 838 415934786 415934830 9.760000e-11 78.7
19 TraesCS3D01G029300 chr3B 93.878 49 3 0 790 838 567473610 567473562 1.260000e-09 75.0
20 TraesCS3D01G029300 chr3B 93.478 46 3 0 793 838 689307660 689307615 5.870000e-08 69.4
21 TraesCS3D01G029300 chr3B 96.774 31 1 0 142 172 14708578 14708608 6.000000e-03 52.8
22 TraesCS3D01G029300 chrUn 80.402 796 149 5 1249 2043 358413536 358412747 1.680000e-167 599.0
23 TraesCS3D01G029300 chrUn 79.774 796 154 5 1249 2043 254254659 254255448 3.670000e-159 571.0
24 TraesCS3D01G029300 chrUn 79.774 796 154 5 1249 2043 290074119 290073330 3.670000e-159 571.0
25 TraesCS3D01G029300 chrUn 79.774 796 154 5 1249 2043 360302543 360301754 3.670000e-159 571.0
26 TraesCS3D01G029300 chrUn 81.605 598 83 8 1356 1943 43295771 43295191 1.380000e-128 470.0
27 TraesCS3D01G029300 chrUn 80.781 333 38 16 919 1239 43296230 43295912 1.520000e-58 237.0
28 TraesCS3D01G029300 chrUn 95.745 47 2 0 792 838 122302093 122302139 3.510000e-10 76.8
29 TraesCS3D01G029300 chr1A 84.375 96 10 5 39 132 520859185 520859277 4.510000e-14 89.8
30 TraesCS3D01G029300 chr2A 87.013 77 8 2 46 121 531153898 531153973 5.830000e-13 86.1
31 TraesCS3D01G029300 chr6B 97.826 46 1 0 793 838 72175640 72175685 2.710000e-11 80.5
32 TraesCS3D01G029300 chr7B 97.778 45 1 0 793 837 222329687 222329731 9.760000e-11 78.7
33 TraesCS3D01G029300 chr5D 84.615 78 10 2 46 122 551998250 551998326 3.510000e-10 76.8
34 TraesCS3D01G029300 chr5D 90.244 41 4 0 637 677 492285875 492285835 2.000000e-03 54.7
35 TraesCS3D01G029300 chr4B 95.745 47 2 0 792 838 140924648 140924602 3.510000e-10 76.8
36 TraesCS3D01G029300 chr4A 93.878 49 3 0 790 838 115298605 115298557 1.260000e-09 75.0
37 TraesCS3D01G029300 chr2D 84.416 77 11 1 46 121 393207384 393207460 1.260000e-09 75.0
38 TraesCS3D01G029300 chr6D 81.522 92 14 2 42 130 284603168 284603077 4.540000e-09 73.1
39 TraesCS3D01G029300 chr5B 81.319 91 15 2 46 134 504680861 504680771 4.540000e-09 73.1
40 TraesCS3D01G029300 chr5A 82.716 81 14 0 42 122 343867358 343867278 4.540000e-09 73.1
41 TraesCS3D01G029300 chr1B 100.000 28 0 0 1 28 535353524 535353551 6.000000e-03 52.8
42 TraesCS3D01G029300 chr1B 100.000 28 0 0 1 28 535360301 535360328 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G029300 chr3D 10642209 10645489 3280 False 6059.0 6059 100.0000 1 3281 1 chr3D.!!$F2 3280
1 TraesCS3D01G029300 chr3D 10375952 10377769 1817 True 656.0 1005 84.3545 347 1691 2 chr3D.!!$R2 1344
2 TraesCS3D01G029300 chr3A 17620326 17623141 2815 True 1584.0 3001 90.8390 639 3271 2 chr3A.!!$R3 2632
3 TraesCS3D01G029300 chr3A 16457238 16458027 789 True 599.0 599 80.4020 1249 2043 1 chr3A.!!$R1 794
4 TraesCS3D01G029300 chr3B 26586756 26589170 2414 True 1554.0 2937 85.7840 347 2756 2 chr3B.!!$R4 2409
5 TraesCS3D01G029300 chr3B 15053073 15054511 1438 False 467.0 713 84.8950 347 1692 3 chr3B.!!$F3 1345
6 TraesCS3D01G029300 chrUn 358412747 358413536 789 True 599.0 599 80.4020 1249 2043 1 chrUn.!!$R2 794
7 TraesCS3D01G029300 chrUn 254254659 254255448 789 False 571.0 571 79.7740 1249 2043 1 chrUn.!!$F2 794
8 TraesCS3D01G029300 chrUn 290073330 290074119 789 True 571.0 571 79.7740 1249 2043 1 chrUn.!!$R1 794
9 TraesCS3D01G029300 chrUn 360301754 360302543 789 True 571.0 571 79.7740 1249 2043 1 chrUn.!!$R3 794
10 TraesCS3D01G029300 chrUn 43295191 43296230 1039 True 353.5 470 81.1930 919 1943 2 chrUn.!!$R4 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.185175 AAACCCAAACCCTCGCTTCT 59.815 50.0 0.00 0.0 0.00 2.85 F
299 300 0.250770 AACCCAAACCCTCGCTTCTC 60.251 55.0 0.00 0.0 0.00 2.87 F
302 303 0.321671 CCAAACCCTCGCTTCTCAGA 59.678 55.0 0.00 0.0 0.00 3.27 F
339 340 0.584876 AAAGAAACTTTCCGCCGTCG 59.415 50.0 0.00 0.0 0.00 5.12 F
2095 2737 0.695347 AGGAAAGGGCCTGACTTCTG 59.305 55.0 6.92 0.0 36.76 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1910 0.033504 AGACAGGTTAGTGCCACACG 59.966 55.0 0.0 0.0 39.64 4.49 R
1795 2429 0.463295 CGCTCTGGCTCCATGTTGAT 60.463 55.0 0.0 0.0 36.09 2.57 R
2095 2737 1.177401 GGAAACAGGGTCAATGGAGC 58.823 55.0 0.0 0.0 40.81 4.70 R
2207 2849 5.752472 ACATCATCATCGTCATCAGAAGAAC 59.248 40.0 0.0 0.0 35.90 3.01 R
2932 3587 1.832883 AGCGTGGCATCCAATAAACA 58.167 45.0 0.0 0.0 34.18 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.996554 TGTATCGAAAAGATATCACCATGTATT 57.003 29.630 5.32 0.00 43.13 1.89
182 183 8.272176 TCAATGATTTGAATTTGTTAAACGTGC 58.728 29.630 0.00 0.00 38.90 5.34
183 184 6.517914 TGATTTGAATTTGTTAAACGTGCC 57.482 33.333 0.00 0.00 0.00 5.01
184 185 5.463724 TGATTTGAATTTGTTAAACGTGCCC 59.536 36.000 0.00 0.00 0.00 5.36
185 186 4.657436 TTGAATTTGTTAAACGTGCCCT 57.343 36.364 0.00 0.00 0.00 5.19
186 187 4.657436 TGAATTTGTTAAACGTGCCCTT 57.343 36.364 0.00 0.00 0.00 3.95
187 188 4.612943 TGAATTTGTTAAACGTGCCCTTC 58.387 39.130 0.00 0.00 0.00 3.46
188 189 4.339814 TGAATTTGTTAAACGTGCCCTTCT 59.660 37.500 0.00 0.00 0.00 2.85
189 190 5.531659 TGAATTTGTTAAACGTGCCCTTCTA 59.468 36.000 0.00 0.00 0.00 2.10
190 191 5.622770 ATTTGTTAAACGTGCCCTTCTAG 57.377 39.130 0.00 0.00 0.00 2.43
191 192 3.048337 TGTTAAACGTGCCCTTCTAGG 57.952 47.619 0.00 0.00 34.30 3.02
211 212 4.980805 GTGCCGTGCCAGGAACGA 62.981 66.667 22.97 0.00 43.68 3.85
212 213 4.015406 TGCCGTGCCAGGAACGAT 62.015 61.111 22.97 0.00 43.68 3.73
213 214 2.746277 GCCGTGCCAGGAACGATT 60.746 61.111 22.97 0.00 43.68 3.34
214 215 3.039202 GCCGTGCCAGGAACGATTG 62.039 63.158 22.97 5.91 43.68 2.67
215 216 2.480555 CGTGCCAGGAACGATTGC 59.519 61.111 15.94 0.00 43.68 3.56
216 217 2.877691 GTGCCAGGAACGATTGCC 59.122 61.111 0.00 0.00 0.00 4.52
217 218 2.745884 TGCCAGGAACGATTGCCG 60.746 61.111 0.00 0.00 45.44 5.69
218 219 3.508840 GCCAGGAACGATTGCCGG 61.509 66.667 0.00 0.00 43.93 6.13
219 220 2.824041 CCAGGAACGATTGCCGGG 60.824 66.667 2.18 0.00 43.93 5.73
220 221 3.508840 CAGGAACGATTGCCGGGC 61.509 66.667 13.32 13.32 43.93 6.13
221 222 3.717294 AGGAACGATTGCCGGGCT 61.717 61.111 21.46 0.00 43.93 5.19
222 223 3.508840 GGAACGATTGCCGGGCTG 61.509 66.667 21.46 9.85 43.93 4.85
223 224 2.746277 GAACGATTGCCGGGCTGT 60.746 61.111 21.46 8.58 43.93 4.40
224 225 3.039202 GAACGATTGCCGGGCTGTG 62.039 63.158 21.46 9.85 43.93 3.66
227 228 3.818787 GATTGCCGGGCTGTGCAG 61.819 66.667 21.46 0.00 38.95 4.41
228 229 4.666253 ATTGCCGGGCTGTGCAGT 62.666 61.111 21.46 4.69 38.95 4.40
256 257 3.058160 CCCGTTTGGCCAGCTCTG 61.058 66.667 5.11 0.00 0.00 3.35
257 258 2.281761 CCGTTTGGCCAGCTCTGT 60.282 61.111 5.11 0.00 0.00 3.41
258 259 2.328099 CCGTTTGGCCAGCTCTGTC 61.328 63.158 5.11 0.00 0.00 3.51
259 260 2.671177 CGTTTGGCCAGCTCTGTCG 61.671 63.158 5.11 0.81 0.00 4.35
260 261 2.669569 TTTGGCCAGCTCTGTCGC 60.670 61.111 5.11 0.00 0.00 5.19
261 262 4.704833 TTGGCCAGCTCTGTCGCC 62.705 66.667 5.11 9.35 38.08 5.54
263 264 4.828925 GGCCAGCTCTGTCGCCTC 62.829 72.222 0.00 0.00 35.76 4.70
264 265 4.828925 GCCAGCTCTGTCGCCTCC 62.829 72.222 0.00 0.00 0.00 4.30
265 266 4.154347 CCAGCTCTGTCGCCTCCC 62.154 72.222 0.00 0.00 0.00 4.30
266 267 4.504916 CAGCTCTGTCGCCTCCCG 62.505 72.222 0.00 0.00 38.61 5.14
269 270 4.504916 CTCTGTCGCCTCCCGCTG 62.505 72.222 0.00 0.00 36.73 5.18
281 282 4.697756 CCGCTGCCTCGTCCCAAA 62.698 66.667 0.00 0.00 0.00 3.28
282 283 3.423154 CGCTGCCTCGTCCCAAAC 61.423 66.667 0.00 0.00 0.00 2.93
283 284 3.056328 GCTGCCTCGTCCCAAACC 61.056 66.667 0.00 0.00 0.00 3.27
284 285 2.359975 CTGCCTCGTCCCAAACCC 60.360 66.667 0.00 0.00 0.00 4.11
285 286 3.172106 TGCCTCGTCCCAAACCCA 61.172 61.111 0.00 0.00 0.00 4.51
286 287 2.114411 GCCTCGTCCCAAACCCAA 59.886 61.111 0.00 0.00 0.00 4.12
287 288 1.529713 GCCTCGTCCCAAACCCAAA 60.530 57.895 0.00 0.00 0.00 3.28
288 289 1.802337 GCCTCGTCCCAAACCCAAAC 61.802 60.000 0.00 0.00 0.00 2.93
289 290 1.176619 CCTCGTCCCAAACCCAAACC 61.177 60.000 0.00 0.00 0.00 3.27
290 291 1.152715 TCGTCCCAAACCCAAACCC 60.153 57.895 0.00 0.00 0.00 4.11
291 292 1.152631 CGTCCCAAACCCAAACCCT 60.153 57.895 0.00 0.00 0.00 4.34
292 293 1.176619 CGTCCCAAACCCAAACCCTC 61.177 60.000 0.00 0.00 0.00 4.30
293 294 1.151908 TCCCAAACCCAAACCCTCG 59.848 57.895 0.00 0.00 0.00 4.63
294 295 2.570284 CCCAAACCCAAACCCTCGC 61.570 63.158 0.00 0.00 0.00 5.03
295 296 1.530655 CCAAACCCAAACCCTCGCT 60.531 57.895 0.00 0.00 0.00 4.93
296 297 1.112916 CCAAACCCAAACCCTCGCTT 61.113 55.000 0.00 0.00 0.00 4.68
297 298 0.313987 CAAACCCAAACCCTCGCTTC 59.686 55.000 0.00 0.00 0.00 3.86
298 299 0.185175 AAACCCAAACCCTCGCTTCT 59.815 50.000 0.00 0.00 0.00 2.85
299 300 0.250770 AACCCAAACCCTCGCTTCTC 60.251 55.000 0.00 0.00 0.00 2.87
300 301 1.374947 CCCAAACCCTCGCTTCTCA 59.625 57.895 0.00 0.00 0.00 3.27
301 302 0.674895 CCCAAACCCTCGCTTCTCAG 60.675 60.000 0.00 0.00 0.00 3.35
302 303 0.321671 CCAAACCCTCGCTTCTCAGA 59.678 55.000 0.00 0.00 0.00 3.27
303 304 1.674221 CCAAACCCTCGCTTCTCAGAG 60.674 57.143 0.00 0.00 0.00 3.35
304 305 1.273606 CAAACCCTCGCTTCTCAGAGA 59.726 52.381 0.00 0.00 36.65 3.10
305 306 1.181786 AACCCTCGCTTCTCAGAGAG 58.818 55.000 0.00 0.00 44.45 3.20
338 339 2.768833 AAAAGAAACTTTCCGCCGTC 57.231 45.000 0.00 0.00 0.00 4.79
339 340 0.584876 AAAGAAACTTTCCGCCGTCG 59.415 50.000 0.00 0.00 0.00 5.12
340 341 1.838568 AAGAAACTTTCCGCCGTCGC 61.839 55.000 0.00 0.00 0.00 5.19
341 342 3.304764 GAAACTTTCCGCCGTCGCC 62.305 63.158 0.00 0.00 0.00 5.54
501 506 0.975556 TCTTGCAGCGGATAGACCCA 60.976 55.000 0.00 0.00 34.64 4.51
505 521 0.969894 GCAGCGGATAGACCCAGTAT 59.030 55.000 0.00 0.00 34.64 2.12
517 533 7.674772 GGATAGACCCAGTATTAGTTCAGGTAT 59.325 40.741 0.00 0.00 0.00 2.73
523 544 5.070446 CCAGTATTAGTTCAGGTATGGCTGA 59.930 44.000 0.00 0.00 0.00 4.26
528 549 2.846206 AGTTCAGGTATGGCTGAATCCA 59.154 45.455 0.00 0.00 40.96 3.41
538 562 1.072965 GGCTGAATCCATCCCGATTCT 59.927 52.381 11.43 0.00 45.59 2.40
540 564 2.775890 CTGAATCCATCCCGATTCTGG 58.224 52.381 11.43 0.00 45.59 3.86
543 567 3.008375 TGAATCCATCCCGATTCTGGATC 59.992 47.826 6.64 0.00 46.57 3.36
600 625 1.066215 GCCCAAATTTGAGCCGGAATT 60.066 47.619 19.86 0.00 0.00 2.17
601 626 2.615240 GCCCAAATTTGAGCCGGAATTT 60.615 45.455 19.86 5.61 36.25 1.82
619 646 5.278315 GGAATTTACCGTCTTTTCACTGCTT 60.278 40.000 0.00 0.00 0.00 3.91
620 647 4.806342 TTTACCGTCTTTTCACTGCTTC 57.194 40.909 0.00 0.00 0.00 3.86
672 731 4.386867 AATGAGGCAAATCAGCTCAATG 57.613 40.909 0.00 0.00 31.44 2.82
680 739 4.325472 GCAAATCAGCTCAATGTTTACTGC 59.675 41.667 0.00 0.00 0.00 4.40
684 743 1.075374 AGCTCAATGTTTACTGCCCCA 59.925 47.619 0.00 0.00 0.00 4.96
709 768 9.390795 CAAAACAAGAGAAATTACAGATGTGAG 57.609 33.333 0.00 0.00 0.00 3.51
712 771 9.512588 AACAAGAGAAATTACAGATGTGAGATT 57.487 29.630 0.00 0.00 0.00 2.40
747 809 4.508124 CCACTCGATTAATTAGCCTGTGTC 59.492 45.833 0.00 0.00 0.00 3.67
755 822 7.587757 CGATTAATTAGCCTGTGTCTAAATTGC 59.412 37.037 0.00 0.00 30.76 3.56
778 846 4.497340 CGCTTGTCTGTTGCTTTTCCTTTA 60.497 41.667 0.00 0.00 0.00 1.85
802 872 3.252554 TCTTGGCCCCAAACAATTACT 57.747 42.857 0.00 0.00 35.33 2.24
803 873 3.161866 TCTTGGCCCCAAACAATTACTC 58.838 45.455 0.00 0.00 35.33 2.59
804 874 1.931635 TGGCCCCAAACAATTACTCC 58.068 50.000 0.00 0.00 0.00 3.85
805 875 1.191535 GGCCCCAAACAATTACTCCC 58.808 55.000 0.00 0.00 0.00 4.30
809 879 2.752903 CCCCAAACAATTACTCCCTTCG 59.247 50.000 0.00 0.00 0.00 3.79
813 883 4.082949 CCAAACAATTACTCCCTTCGTTCC 60.083 45.833 0.00 0.00 0.00 3.62
815 885 4.360951 ACAATTACTCCCTTCGTTCCAA 57.639 40.909 0.00 0.00 0.00 3.53
816 886 4.721132 ACAATTACTCCCTTCGTTCCAAA 58.279 39.130 0.00 0.00 0.00 3.28
817 887 5.134661 ACAATTACTCCCTTCGTTCCAAAA 58.865 37.500 0.00 0.00 0.00 2.44
820 890 7.120726 ACAATTACTCCCTTCGTTCCAAAATAG 59.879 37.037 0.00 0.00 0.00 1.73
821 891 4.903045 ACTCCCTTCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
822 892 5.437191 ACTCCCTTCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
823 893 5.186198 ACTCCCTTCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
824 894 5.045869 ACTCCCTTCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
826 896 5.045869 TCCCTTCGTTCCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
827 897 5.294552 CCCTTCGTTCCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
829 899 6.371548 CCTTCGTTCCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
830 900 6.721571 TCGTTCCAAAATAGATGACTCAAC 57.278 37.500 0.00 0.00 0.00 3.18
831 901 6.464222 TCGTTCCAAAATAGATGACTCAACT 58.536 36.000 0.00 0.00 0.00 3.16
832 902 6.934645 TCGTTCCAAAATAGATGACTCAACTT 59.065 34.615 0.00 0.00 0.00 2.66
833 903 7.444183 TCGTTCCAAAATAGATGACTCAACTTT 59.556 33.333 0.00 0.00 0.00 2.66
834 904 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
835 905 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
836 906 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
845 915 4.994852 TGACTCAACTTTGTACATACCAGC 59.005 41.667 0.00 0.00 0.00 4.85
861 931 0.804989 CAGCGTCACTTCCAAATCCC 59.195 55.000 0.00 0.00 0.00 3.85
894 964 5.419542 TCAGTATATCTTGTGGTCTTGTGC 58.580 41.667 0.00 0.00 0.00 4.57
1006 1564 1.606668 GAGTTTTGTTGGCGATGGACA 59.393 47.619 0.00 0.00 0.00 4.02
1280 1910 7.989826 AGTTATGGTAGCTGAAATGATGAAAC 58.010 34.615 0.00 0.00 0.00 2.78
1285 1915 4.151258 AGCTGAAATGATGAAACGTGTG 57.849 40.909 0.00 0.00 0.00 3.82
1342 1974 8.950007 TTCTGTTTTCCCCTTCTTATTTATGT 57.050 30.769 0.00 0.00 0.00 2.29
1458 2090 1.966451 GGACAAGAAGTGCCCCACG 60.966 63.158 0.00 0.00 39.64 4.94
1518 2152 2.218603 GAACATGTTGTCCGGTCAGTT 58.781 47.619 17.58 2.26 0.00 3.16
1815 2453 2.110967 CAACATGGAGCCAGAGCGG 61.111 63.158 0.00 0.00 46.67 5.52
1863 2501 2.734492 CGTCCAACCTAAAGCTACGGAG 60.734 54.545 0.00 0.00 0.00 4.63
1998 2640 5.472137 CGACTTAATTCCACCCAAGAGAAAA 59.528 40.000 0.00 0.00 0.00 2.29
2094 2736 1.450360 AAGGAAAGGGCCTGACTTCT 58.550 50.000 6.92 0.00 38.58 2.85
2095 2737 0.695347 AGGAAAGGGCCTGACTTCTG 59.305 55.000 6.92 0.00 36.76 3.02
2130 2772 4.447290 TGTTTCCTCGTTGTTCTGATGAA 58.553 39.130 0.00 0.00 0.00 2.57
2135 2777 3.063180 CCTCGTTGTTCTGATGAAGATGC 59.937 47.826 0.00 0.00 33.93 3.91
2136 2778 3.930336 TCGTTGTTCTGATGAAGATGCT 58.070 40.909 0.00 0.00 33.93 3.79
2207 2849 6.205464 TCTCAAAAGCTACTGTTTCCTGATTG 59.795 38.462 0.00 0.00 0.00 2.67
2464 3109 7.284489 AGCTGTTTTGACCTTCTTTATGTGTTA 59.716 33.333 0.00 0.00 0.00 2.41
2471 3116 9.562408 TTGACCTTCTTTATGTGTTATGTTGTA 57.438 29.630 0.00 0.00 0.00 2.41
2480 3125 4.309099 TGTGTTATGTTGTACGGAACTCC 58.691 43.478 0.00 0.00 0.00 3.85
2485 3130 0.672711 GTTGTACGGAACTCCTGCCC 60.673 60.000 0.00 0.00 0.00 5.36
2486 3131 1.833787 TTGTACGGAACTCCTGCCCC 61.834 60.000 0.00 0.00 0.00 5.80
2487 3132 2.120940 TACGGAACTCCTGCCCCA 59.879 61.111 0.00 0.00 0.00 4.96
2488 3133 1.536907 TACGGAACTCCTGCCCCAA 60.537 57.895 0.00 0.00 0.00 4.12
2494 3139 0.188342 AACTCCTGCCCCAACATGTT 59.812 50.000 4.92 4.92 0.00 2.71
2496 3141 1.640670 ACTCCTGCCCCAACATGTTAT 59.359 47.619 11.53 0.00 0.00 1.89
2504 3149 2.445427 CCCAACATGTTATGCTGTCCA 58.555 47.619 11.53 0.00 0.00 4.02
2592 3238 9.461312 AGTTATCCTGTTTTATAATCTTGCACA 57.539 29.630 0.00 0.00 0.00 4.57
2602 3248 7.581213 TTATAATCTTGCACAATAACAGGGG 57.419 36.000 0.00 0.00 0.00 4.79
2607 3253 3.670105 CACAATAACAGGGGTGCCT 57.330 52.632 0.00 0.00 0.00 4.75
2658 3313 6.363882 TGAGTTCCCAATGTTGCATATATCA 58.636 36.000 0.00 0.00 0.00 2.15
2685 3340 7.110765 GCAATATCGACGAAATGAATTGTCTTC 59.889 37.037 0.00 0.00 0.00 2.87
2742 3397 4.878397 GCACAAAGACCAAGCTAGACATAT 59.122 41.667 0.00 0.00 0.00 1.78
2769 3424 0.401738 ACTGCCAGGCACAATACTGT 59.598 50.000 11.22 1.53 33.79 3.55
2812 3467 5.897377 AATTGCAACTGGTTACTATGTCC 57.103 39.130 0.00 0.00 0.00 4.02
2813 3468 2.967362 TGCAACTGGTTACTATGTCCG 58.033 47.619 0.00 0.00 0.00 4.79
2814 3469 1.664151 GCAACTGGTTACTATGTCCGC 59.336 52.381 0.00 0.00 0.00 5.54
2815 3470 2.933492 GCAACTGGTTACTATGTCCGCA 60.933 50.000 0.00 0.00 0.00 5.69
2816 3471 2.667473 ACTGGTTACTATGTCCGCAC 57.333 50.000 0.00 0.00 0.00 5.34
2817 3472 2.176889 ACTGGTTACTATGTCCGCACT 58.823 47.619 0.00 0.00 0.00 4.40
2818 3473 2.565834 ACTGGTTACTATGTCCGCACTT 59.434 45.455 0.00 0.00 0.00 3.16
2819 3474 3.007614 ACTGGTTACTATGTCCGCACTTT 59.992 43.478 0.00 0.00 0.00 2.66
2820 3475 4.000988 CTGGTTACTATGTCCGCACTTTT 58.999 43.478 0.00 0.00 0.00 2.27
2821 3476 5.149973 TGGTTACTATGTCCGCACTTTTA 57.850 39.130 0.00 0.00 0.00 1.52
2822 3477 5.549347 TGGTTACTATGTCCGCACTTTTAA 58.451 37.500 0.00 0.00 0.00 1.52
2823 3478 5.640357 TGGTTACTATGTCCGCACTTTTAAG 59.360 40.000 0.00 0.00 0.00 1.85
2824 3479 5.870978 GGTTACTATGTCCGCACTTTTAAGA 59.129 40.000 0.00 0.00 0.00 2.10
2825 3480 6.369615 GGTTACTATGTCCGCACTTTTAAGAA 59.630 38.462 0.00 0.00 0.00 2.52
2826 3481 7.412672 GGTTACTATGTCCGCACTTTTAAGAAG 60.413 40.741 0.00 0.00 0.00 2.85
2827 3482 5.548406 ACTATGTCCGCACTTTTAAGAAGT 58.452 37.500 0.00 0.00 0.00 3.01
2828 3483 5.995897 ACTATGTCCGCACTTTTAAGAAGTT 59.004 36.000 0.00 0.00 0.00 2.66
2829 3484 4.545823 TGTCCGCACTTTTAAGAAGTTG 57.454 40.909 0.00 0.00 0.00 3.16
2830 3485 3.314080 TGTCCGCACTTTTAAGAAGTTGG 59.686 43.478 0.00 9.74 0.00 3.77
2831 3486 3.314357 GTCCGCACTTTTAAGAAGTTGGT 59.686 43.478 0.00 0.00 0.00 3.67
2832 3487 3.562557 TCCGCACTTTTAAGAAGTTGGTC 59.437 43.478 0.00 0.00 0.00 4.02
2833 3488 3.541711 CGCACTTTTAAGAAGTTGGTCG 58.458 45.455 0.00 0.00 0.00 4.79
2834 3489 3.001939 CGCACTTTTAAGAAGTTGGTCGT 59.998 43.478 0.00 0.00 0.00 4.34
2835 3490 4.524749 GCACTTTTAAGAAGTTGGTCGTC 58.475 43.478 0.00 0.00 0.00 4.20
2836 3491 4.034742 GCACTTTTAAGAAGTTGGTCGTCA 59.965 41.667 0.00 0.00 0.00 4.35
2837 3492 5.499047 CACTTTTAAGAAGTTGGTCGTCAC 58.501 41.667 0.00 0.00 0.00 3.67
2838 3493 5.064198 CACTTTTAAGAAGTTGGTCGTCACA 59.936 40.000 0.00 0.00 0.00 3.58
2839 3494 5.820947 ACTTTTAAGAAGTTGGTCGTCACAT 59.179 36.000 0.00 0.00 0.00 3.21
2840 3495 5.666969 TTTAAGAAGTTGGTCGTCACATG 57.333 39.130 0.00 0.00 0.00 3.21
2841 3496 2.910688 AGAAGTTGGTCGTCACATGT 57.089 45.000 0.00 0.00 0.00 3.21
2842 3497 3.194005 AGAAGTTGGTCGTCACATGTT 57.806 42.857 0.00 0.00 0.00 2.71
2843 3498 4.330944 AGAAGTTGGTCGTCACATGTTA 57.669 40.909 0.00 0.00 0.00 2.41
2844 3499 4.056050 AGAAGTTGGTCGTCACATGTTAC 58.944 43.478 0.00 0.00 0.00 2.50
2845 3500 3.746045 AGTTGGTCGTCACATGTTACT 57.254 42.857 8.46 0.00 0.00 2.24
2846 3501 3.390135 AGTTGGTCGTCACATGTTACTG 58.610 45.455 8.46 2.83 0.00 2.74
2847 3502 3.128349 GTTGGTCGTCACATGTTACTGT 58.872 45.455 8.46 0.00 0.00 3.55
2848 3503 3.462483 TGGTCGTCACATGTTACTGTT 57.538 42.857 8.46 0.00 0.00 3.16
2849 3504 3.799366 TGGTCGTCACATGTTACTGTTT 58.201 40.909 8.46 0.00 0.00 2.83
2850 3505 3.805422 TGGTCGTCACATGTTACTGTTTC 59.195 43.478 8.46 0.00 0.00 2.78
2851 3506 3.805422 GGTCGTCACATGTTACTGTTTCA 59.195 43.478 8.46 0.00 0.00 2.69
2852 3507 4.271533 GGTCGTCACATGTTACTGTTTCAA 59.728 41.667 8.46 0.00 0.00 2.69
2853 3508 5.432157 GTCGTCACATGTTACTGTTTCAAG 58.568 41.667 8.46 0.00 0.00 3.02
2854 3509 5.006358 GTCGTCACATGTTACTGTTTCAAGT 59.994 40.000 8.46 0.00 0.00 3.16
2855 3510 5.583061 TCGTCACATGTTACTGTTTCAAGTT 59.417 36.000 8.46 0.00 0.00 2.66
2856 3511 6.092944 TCGTCACATGTTACTGTTTCAAGTTT 59.907 34.615 8.46 0.00 0.00 2.66
2857 3512 6.194508 CGTCACATGTTACTGTTTCAAGTTTG 59.805 38.462 8.46 0.00 0.00 2.93
2858 3513 7.247728 GTCACATGTTACTGTTTCAAGTTTGA 58.752 34.615 0.00 0.00 34.92 2.69
2859 3514 7.753132 GTCACATGTTACTGTTTCAAGTTTGAA 59.247 33.333 0.00 3.28 44.78 2.69
2874 3529 9.868277 TTCAAGTTTGAAACAACTGAAATATGT 57.132 25.926 11.02 0.00 43.62 2.29
2875 3530 9.515020 TCAAGTTTGAAACAACTGAAATATGTC 57.485 29.630 11.02 0.00 33.55 3.06
2876 3531 8.755018 CAAGTTTGAAACAACTGAAATATGTCC 58.245 33.333 11.02 0.00 0.00 4.02
2877 3532 8.006298 AGTTTGAAACAACTGAAATATGTCCA 57.994 30.769 11.02 0.00 0.00 4.02
2878 3533 7.920682 AGTTTGAAACAACTGAAATATGTCCAC 59.079 33.333 11.02 0.00 0.00 4.02
2879 3534 5.996219 TGAAACAACTGAAATATGTCCACG 58.004 37.500 0.00 0.00 0.00 4.94
2880 3535 5.529430 TGAAACAACTGAAATATGTCCACGT 59.471 36.000 0.00 0.00 0.00 4.49
2881 3536 6.706716 TGAAACAACTGAAATATGTCCACGTA 59.293 34.615 0.00 0.00 0.00 3.57
2882 3537 7.389330 TGAAACAACTGAAATATGTCCACGTAT 59.611 33.333 0.00 0.00 0.00 3.06
2883 3538 6.903883 ACAACTGAAATATGTCCACGTATC 57.096 37.500 0.00 0.00 0.00 2.24
2884 3539 5.815740 ACAACTGAAATATGTCCACGTATCC 59.184 40.000 0.00 0.00 0.00 2.59
2885 3540 4.957296 ACTGAAATATGTCCACGTATCCC 58.043 43.478 0.00 0.00 0.00 3.85
2886 3541 4.654262 ACTGAAATATGTCCACGTATCCCT 59.346 41.667 0.00 0.00 0.00 4.20
2887 3542 4.956085 TGAAATATGTCCACGTATCCCTG 58.044 43.478 0.00 0.00 0.00 4.45
2888 3543 4.407621 TGAAATATGTCCACGTATCCCTGT 59.592 41.667 0.00 0.00 0.00 4.00
2889 3544 5.599242 TGAAATATGTCCACGTATCCCTGTA 59.401 40.000 0.00 0.00 0.00 2.74
2890 3545 6.098552 TGAAATATGTCCACGTATCCCTGTAA 59.901 38.462 0.00 0.00 0.00 2.41
2891 3546 3.814005 ATGTCCACGTATCCCTGTAAC 57.186 47.619 0.00 0.00 0.00 2.50
2892 3547 1.473677 TGTCCACGTATCCCTGTAACG 59.526 52.381 0.00 0.00 42.17 3.18
2893 3548 1.745087 GTCCACGTATCCCTGTAACGA 59.255 52.381 0.63 0.00 39.80 3.85
2894 3549 2.360165 GTCCACGTATCCCTGTAACGAT 59.640 50.000 0.63 0.00 39.80 3.73
2895 3550 3.565482 GTCCACGTATCCCTGTAACGATA 59.435 47.826 0.63 0.00 39.80 2.92
2896 3551 3.817084 TCCACGTATCCCTGTAACGATAG 59.183 47.826 0.63 0.00 39.80 2.08
2897 3552 3.817084 CCACGTATCCCTGTAACGATAGA 59.183 47.826 0.63 0.00 39.80 1.98
2898 3553 4.458295 CCACGTATCCCTGTAACGATAGAT 59.542 45.833 0.63 0.00 39.80 1.98
2899 3554 5.645067 CCACGTATCCCTGTAACGATAGATA 59.355 44.000 0.63 0.00 39.80 1.98
2900 3555 6.183360 CCACGTATCCCTGTAACGATAGATAG 60.183 46.154 0.63 0.00 39.80 2.08
2901 3556 5.879223 ACGTATCCCTGTAACGATAGATAGG 59.121 44.000 0.63 0.00 39.80 2.57
2902 3557 5.220815 CGTATCCCTGTAACGATAGATAGGC 60.221 48.000 0.00 0.00 38.89 3.93
2903 3558 4.108501 TCCCTGTAACGATAGATAGGCA 57.891 45.455 0.00 0.00 41.38 4.75
2904 3559 4.673968 TCCCTGTAACGATAGATAGGCAT 58.326 43.478 0.00 0.00 41.38 4.40
2905 3560 5.823312 TCCCTGTAACGATAGATAGGCATA 58.177 41.667 0.00 0.00 41.38 3.14
2906 3561 5.886474 TCCCTGTAACGATAGATAGGCATAG 59.114 44.000 0.00 0.00 41.38 2.23
2907 3562 5.886474 CCCTGTAACGATAGATAGGCATAGA 59.114 44.000 0.00 0.00 41.38 1.98
2908 3563 6.547880 CCCTGTAACGATAGATAGGCATAGAT 59.452 42.308 0.00 0.00 41.38 1.98
2909 3564 7.720074 CCCTGTAACGATAGATAGGCATAGATA 59.280 40.741 0.00 0.00 41.38 1.98
2910 3565 9.121658 CCTGTAACGATAGATAGGCATAGATAA 57.878 37.037 0.00 0.00 41.38 1.75
2925 3580 9.780186 AGGCATAGATAAACTTACTGTATTTCC 57.220 33.333 0.00 0.00 0.00 3.13
2926 3581 9.555727 GGCATAGATAAACTTACTGTATTTCCA 57.444 33.333 0.00 0.00 0.00 3.53
2947 3602 7.429374 TCCAAATATTGTTTATTGGATGCCA 57.571 32.000 2.12 0.00 44.71 4.92
2948 3603 7.271511 TCCAAATATTGTTTATTGGATGCCAC 58.728 34.615 2.12 0.00 44.71 5.01
2949 3604 6.200665 CCAAATATTGTTTATTGGATGCCACG 59.799 38.462 0.00 0.00 44.01 4.94
2950 3605 2.645730 TTGTTTATTGGATGCCACGC 57.354 45.000 0.00 0.00 30.78 5.34
2951 3606 1.832883 TGTTTATTGGATGCCACGCT 58.167 45.000 0.00 0.00 30.78 5.07
2952 3607 2.992593 TGTTTATTGGATGCCACGCTA 58.007 42.857 0.00 0.00 30.78 4.26
2953 3608 3.550820 TGTTTATTGGATGCCACGCTAT 58.449 40.909 0.00 0.00 30.78 2.97
2954 3609 4.709250 TGTTTATTGGATGCCACGCTATA 58.291 39.130 0.00 0.00 30.78 1.31
2955 3610 5.126779 TGTTTATTGGATGCCACGCTATAA 58.873 37.500 0.00 0.00 30.78 0.98
2956 3611 5.767665 TGTTTATTGGATGCCACGCTATAAT 59.232 36.000 0.00 0.00 30.78 1.28
2957 3612 6.264292 TGTTTATTGGATGCCACGCTATAATT 59.736 34.615 0.00 0.00 30.78 1.40
2958 3613 6.892658 TTATTGGATGCCACGCTATAATTT 57.107 33.333 0.00 0.00 30.78 1.82
2959 3614 5.789643 ATTGGATGCCACGCTATAATTTT 57.210 34.783 0.00 0.00 30.78 1.82
2960 3615 5.590530 TTGGATGCCACGCTATAATTTTT 57.409 34.783 0.00 0.00 30.78 1.94
3104 4128 6.268847 TGGTGCCCTTTTGTAATTTAGTTGAT 59.731 34.615 0.00 0.00 0.00 2.57
3107 4131 8.034804 GTGCCCTTTTGTAATTTAGTTGATCAT 58.965 33.333 0.00 0.00 0.00 2.45
3182 4206 5.428496 ACATGTGTCATCTTTGTCTGTTG 57.572 39.130 0.00 0.00 0.00 3.33
3227 4252 9.331282 ACTAGTAATCCTCTAAAATGTGCAATC 57.669 33.333 0.00 0.00 0.00 2.67
3228 4253 9.330063 CTAGTAATCCTCTAAAATGTGCAATCA 57.670 33.333 0.00 0.00 0.00 2.57
3257 4282 5.983333 ACATATTCTTCTGTGGGGATCTT 57.017 39.130 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.996554 AATACATGGTGATATCTTTTCGATACA 57.003 29.630 3.98 0.00 37.43 2.29
156 157 8.272176 GCACGTTTAACAAATTCAAATCATTGA 58.728 29.630 0.00 0.00 43.70 2.57
157 158 7.530190 GGCACGTTTAACAAATTCAAATCATTG 59.470 33.333 0.00 0.00 37.92 2.82
158 159 7.307692 GGGCACGTTTAACAAATTCAAATCATT 60.308 33.333 0.00 0.00 0.00 2.57
159 160 6.147000 GGGCACGTTTAACAAATTCAAATCAT 59.853 34.615 0.00 0.00 0.00 2.45
160 161 5.463724 GGGCACGTTTAACAAATTCAAATCA 59.536 36.000 0.00 0.00 0.00 2.57
161 162 5.694458 AGGGCACGTTTAACAAATTCAAATC 59.306 36.000 0.00 0.00 0.00 2.17
162 163 5.606505 AGGGCACGTTTAACAAATTCAAAT 58.393 33.333 0.00 0.00 0.00 2.32
163 164 5.012328 AGGGCACGTTTAACAAATTCAAA 57.988 34.783 0.00 0.00 0.00 2.69
164 165 4.657436 AGGGCACGTTTAACAAATTCAA 57.343 36.364 0.00 0.00 0.00 2.69
165 166 4.339814 AGAAGGGCACGTTTAACAAATTCA 59.660 37.500 0.00 0.00 36.18 2.57
166 167 4.866921 AGAAGGGCACGTTTAACAAATTC 58.133 39.130 0.00 0.00 36.18 2.17
167 168 4.929819 AGAAGGGCACGTTTAACAAATT 57.070 36.364 0.00 0.00 36.18 1.82
168 169 4.457949 CCTAGAAGGGCACGTTTAACAAAT 59.542 41.667 0.00 0.00 36.18 2.32
169 170 3.816523 CCTAGAAGGGCACGTTTAACAAA 59.183 43.478 0.00 0.00 36.18 2.83
170 171 3.404899 CCTAGAAGGGCACGTTTAACAA 58.595 45.455 0.00 0.00 36.18 2.83
171 172 3.048337 CCTAGAAGGGCACGTTTAACA 57.952 47.619 0.00 0.00 36.18 2.41
194 195 4.980805 TCGTTCCTGGCACGGCAC 62.981 66.667 18.32 0.00 38.23 5.01
195 196 3.545124 AATCGTTCCTGGCACGGCA 62.545 57.895 18.32 0.79 38.23 5.69
196 197 2.746277 AATCGTTCCTGGCACGGC 60.746 61.111 18.32 0.00 38.23 5.68
197 198 3.039202 GCAATCGTTCCTGGCACGG 62.039 63.158 18.32 4.31 38.23 4.94
198 199 2.480555 GCAATCGTTCCTGGCACG 59.519 61.111 12.75 12.75 39.08 5.34
199 200 2.877691 GGCAATCGTTCCTGGCAC 59.122 61.111 0.00 0.00 37.99 5.01
200 201 2.745884 CGGCAATCGTTCCTGGCA 60.746 61.111 0.00 0.00 37.97 4.92
201 202 3.508840 CCGGCAATCGTTCCTGGC 61.509 66.667 0.00 0.00 37.11 4.85
202 203 2.824041 CCCGGCAATCGTTCCTGG 60.824 66.667 0.00 0.00 37.11 4.45
203 204 3.508840 GCCCGGCAATCGTTCCTG 61.509 66.667 3.91 0.00 37.11 3.86
204 205 3.717294 AGCCCGGCAATCGTTCCT 61.717 61.111 13.15 0.00 37.11 3.36
205 206 3.508840 CAGCCCGGCAATCGTTCC 61.509 66.667 13.15 0.00 37.11 3.62
206 207 2.746277 ACAGCCCGGCAATCGTTC 60.746 61.111 13.15 0.00 37.11 3.95
207 208 3.055719 CACAGCCCGGCAATCGTT 61.056 61.111 13.15 0.00 37.11 3.85
210 211 3.818787 CTGCACAGCCCGGCAATC 61.819 66.667 13.15 0.00 39.93 2.67
211 212 4.666253 ACTGCACAGCCCGGCAAT 62.666 61.111 13.15 0.00 39.93 3.56
239 240 3.058160 CAGAGCTGGCCAAACGGG 61.058 66.667 7.01 0.00 40.85 5.28
240 241 2.281761 ACAGAGCTGGCCAAACGG 60.282 61.111 7.01 4.49 34.19 4.44
241 242 2.671177 CGACAGAGCTGGCCAAACG 61.671 63.158 7.01 0.00 34.34 3.60
242 243 2.970974 GCGACAGAGCTGGCCAAAC 61.971 63.158 7.01 1.16 34.34 2.93
243 244 2.669569 GCGACAGAGCTGGCCAAA 60.670 61.111 7.01 0.00 34.34 3.28
244 245 4.704833 GGCGACAGAGCTGGCCAA 62.705 66.667 7.01 0.00 44.91 4.52
246 247 4.828925 GAGGCGACAGAGCTGGCC 62.829 72.222 0.00 0.00 45.91 5.36
247 248 4.828925 GGAGGCGACAGAGCTGGC 62.829 72.222 0.00 0.00 37.29 4.85
248 249 4.154347 GGGAGGCGACAGAGCTGG 62.154 72.222 0.00 0.00 37.29 4.85
249 250 4.504916 CGGGAGGCGACAGAGCTG 62.505 72.222 0.00 0.00 37.29 4.24
264 265 4.697756 TTTGGGACGAGGCAGCGG 62.698 66.667 4.86 0.00 35.12 5.52
265 266 3.423154 GTTTGGGACGAGGCAGCG 61.423 66.667 0.00 0.00 37.29 5.18
266 267 3.056328 GGTTTGGGACGAGGCAGC 61.056 66.667 0.00 0.00 0.00 5.25
267 268 2.359975 GGGTTTGGGACGAGGCAG 60.360 66.667 0.00 0.00 0.00 4.85
268 269 2.285889 TTTGGGTTTGGGACGAGGCA 62.286 55.000 0.00 0.00 0.00 4.75
269 270 1.529713 TTTGGGTTTGGGACGAGGC 60.530 57.895 0.00 0.00 0.00 4.70
270 271 1.176619 GGTTTGGGTTTGGGACGAGG 61.177 60.000 0.00 0.00 0.00 4.63
271 272 1.176619 GGGTTTGGGTTTGGGACGAG 61.177 60.000 0.00 0.00 0.00 4.18
272 273 1.152715 GGGTTTGGGTTTGGGACGA 60.153 57.895 0.00 0.00 0.00 4.20
273 274 1.152631 AGGGTTTGGGTTTGGGACG 60.153 57.895 0.00 0.00 0.00 4.79
274 275 1.176619 CGAGGGTTTGGGTTTGGGAC 61.177 60.000 0.00 0.00 0.00 4.46
275 276 1.151908 CGAGGGTTTGGGTTTGGGA 59.848 57.895 0.00 0.00 0.00 4.37
276 277 2.570284 GCGAGGGTTTGGGTTTGGG 61.570 63.158 0.00 0.00 0.00 4.12
277 278 1.112916 AAGCGAGGGTTTGGGTTTGG 61.113 55.000 0.00 0.00 0.00 3.28
278 279 0.313987 GAAGCGAGGGTTTGGGTTTG 59.686 55.000 0.00 0.00 0.00 2.93
279 280 0.185175 AGAAGCGAGGGTTTGGGTTT 59.815 50.000 0.00 0.00 0.00 3.27
280 281 0.250770 GAGAAGCGAGGGTTTGGGTT 60.251 55.000 0.00 0.00 0.00 4.11
281 282 1.375326 GAGAAGCGAGGGTTTGGGT 59.625 57.895 0.00 0.00 0.00 4.51
282 283 0.674895 CTGAGAAGCGAGGGTTTGGG 60.675 60.000 0.00 0.00 0.00 4.12
283 284 0.321671 TCTGAGAAGCGAGGGTTTGG 59.678 55.000 0.00 0.00 0.00 3.28
284 285 1.273606 TCTCTGAGAAGCGAGGGTTTG 59.726 52.381 4.57 0.00 0.00 2.93
285 286 1.548269 CTCTCTGAGAAGCGAGGGTTT 59.452 52.381 8.95 0.00 0.00 3.27
286 287 1.181786 CTCTCTGAGAAGCGAGGGTT 58.818 55.000 8.95 0.00 0.00 4.11
287 288 0.329931 TCTCTCTGAGAAGCGAGGGT 59.670 55.000 8.95 0.00 35.59 4.34
288 289 1.024271 CTCTCTCTGAGAAGCGAGGG 58.976 60.000 8.95 0.00 45.39 4.30
297 298 3.827505 CCCCCTCTCTCTCTCTGAG 57.172 63.158 0.00 0.00 43.96 3.35
318 319 2.540157 CGACGGCGGAAAGTTTCTTTTT 60.540 45.455 13.24 0.00 0.00 1.94
319 320 1.003223 CGACGGCGGAAAGTTTCTTTT 60.003 47.619 13.24 0.00 0.00 2.27
320 321 0.584876 CGACGGCGGAAAGTTTCTTT 59.415 50.000 13.24 0.00 0.00 2.52
321 322 1.838568 GCGACGGCGGAAAGTTTCTT 61.839 55.000 15.06 0.00 38.16 2.52
322 323 2.315386 GCGACGGCGGAAAGTTTCT 61.315 57.895 15.06 0.00 38.16 2.52
323 324 2.172659 GCGACGGCGGAAAGTTTC 59.827 61.111 15.06 7.09 38.16 2.78
324 325 3.351416 GGCGACGGCGGAAAGTTT 61.351 61.111 15.06 0.00 41.24 2.66
388 393 4.500116 GCCGGTGAGCTCTCGGAC 62.500 72.222 35.73 26.70 45.96 4.79
501 506 6.808321 TTCAGCCATACCTGAACTAATACT 57.192 37.500 0.81 0.00 44.49 2.12
538 562 1.374343 CGACGACGGAGGAAGATCCA 61.374 60.000 0.00 0.00 39.53 3.41
600 625 4.056050 GAGAAGCAGTGAAAAGACGGTAA 58.944 43.478 0.00 0.00 0.00 2.85
601 626 3.321111 AGAGAAGCAGTGAAAAGACGGTA 59.679 43.478 0.00 0.00 0.00 4.02
605 632 4.376146 ACAGAGAGAAGCAGTGAAAAGAC 58.624 43.478 0.00 0.00 0.00 3.01
612 639 3.872511 ATCTGACAGAGAGAAGCAGTG 57.127 47.619 11.52 0.00 32.80 3.66
672 731 3.634910 TCTCTTGTTTTGGGGCAGTAAAC 59.365 43.478 0.00 0.00 33.50 2.01
680 739 6.648879 TCTGTAATTTCTCTTGTTTTGGGG 57.351 37.500 0.00 0.00 0.00 4.96
684 743 9.342308 TCTCACATCTGTAATTTCTCTTGTTTT 57.658 29.630 0.00 0.00 0.00 2.43
709 768 3.693085 TCGAGTGGTGGAGTACTACAATC 59.307 47.826 10.06 6.06 42.69 2.67
712 771 2.865119 TCGAGTGGTGGAGTACTACA 57.135 50.000 2.78 2.78 42.69 2.74
747 809 2.658325 GCAACAGACAAGCGCAATTTAG 59.342 45.455 11.47 0.00 0.00 1.85
755 822 1.334869 AGGAAAAGCAACAGACAAGCG 59.665 47.619 0.00 0.00 0.00 4.68
778 846 2.990740 TTGTTTGGGGCCAAGATAGT 57.009 45.000 4.39 0.00 37.24 2.12
802 872 5.045869 AGTCATCTATTTTGGAACGAAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
803 873 5.186198 AGTCATCTATTTTGGAACGAAGGG 58.814 41.667 0.00 0.00 0.00 3.95
804 874 5.874810 TGAGTCATCTATTTTGGAACGAAGG 59.125 40.000 0.00 0.00 0.00 3.46
805 875 6.968131 TGAGTCATCTATTTTGGAACGAAG 57.032 37.500 0.00 0.00 0.00 3.79
809 879 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
816 886 9.601217 GGTATGTACAAAGTTGAGTCATCTATT 57.399 33.333 0.00 0.00 0.00 1.73
817 887 8.758829 TGGTATGTACAAAGTTGAGTCATCTAT 58.241 33.333 0.00 0.00 0.00 1.98
820 890 6.183360 GCTGGTATGTACAAAGTTGAGTCATC 60.183 42.308 0.00 0.00 0.00 2.92
821 891 5.643777 GCTGGTATGTACAAAGTTGAGTCAT 59.356 40.000 0.00 2.74 0.00 3.06
822 892 4.994852 GCTGGTATGTACAAAGTTGAGTCA 59.005 41.667 0.00 0.00 0.00 3.41
823 893 4.091509 CGCTGGTATGTACAAAGTTGAGTC 59.908 45.833 0.00 0.00 0.00 3.36
824 894 3.994392 CGCTGGTATGTACAAAGTTGAGT 59.006 43.478 0.00 0.00 0.00 3.41
826 896 3.991773 GACGCTGGTATGTACAAAGTTGA 59.008 43.478 0.00 0.00 0.00 3.18
827 897 3.743911 TGACGCTGGTATGTACAAAGTTG 59.256 43.478 0.00 0.00 0.00 3.16
829 899 3.006537 AGTGACGCTGGTATGTACAAAGT 59.993 43.478 0.00 0.00 0.00 2.66
830 900 3.585862 AGTGACGCTGGTATGTACAAAG 58.414 45.455 0.00 0.00 0.00 2.77
831 901 3.671008 AGTGACGCTGGTATGTACAAA 57.329 42.857 0.00 0.00 0.00 2.83
832 902 3.581755 GAAGTGACGCTGGTATGTACAA 58.418 45.455 0.00 0.00 0.00 2.41
833 903 2.094390 GGAAGTGACGCTGGTATGTACA 60.094 50.000 0.00 0.00 0.00 2.90
834 904 2.094390 TGGAAGTGACGCTGGTATGTAC 60.094 50.000 0.00 0.00 0.00 2.90
835 905 2.172679 TGGAAGTGACGCTGGTATGTA 58.827 47.619 0.00 0.00 0.00 2.29
836 906 0.973632 TGGAAGTGACGCTGGTATGT 59.026 50.000 0.00 0.00 0.00 2.29
839 909 2.614481 GGATTTGGAAGTGACGCTGGTA 60.614 50.000 0.00 0.00 0.00 3.25
845 915 2.472695 TCAGGGATTTGGAAGTGACG 57.527 50.000 0.00 0.00 0.00 4.35
894 964 0.674895 CTCCTTTCTCCGGCCTGTTG 60.675 60.000 0.00 0.00 0.00 3.33
1006 1564 1.602311 CTCTTGTTGGAGTTGCTGCT 58.398 50.000 0.00 0.00 0.00 4.24
1280 1910 0.033504 AGACAGGTTAGTGCCACACG 59.966 55.000 0.00 0.00 39.64 4.49
1285 1915 3.127425 ACAAGAAGACAGGTTAGTGCC 57.873 47.619 0.00 0.00 0.00 5.01
1342 1974 9.416284 GGTCCCCATGAGAATAAGTTTTAATAA 57.584 33.333 0.00 0.00 0.00 1.40
1344 1976 6.839134 GGGTCCCCATGAGAATAAGTTTTAAT 59.161 38.462 0.00 0.00 35.81 1.40
1458 2090 6.374578 GTTGAAGGAAGTTTTGATAGAGCAC 58.625 40.000 0.00 0.00 0.00 4.40
1511 2145 2.070262 GCAAGGAAATGCAACTGACC 57.930 50.000 0.00 0.00 45.70 4.02
1636 2270 2.203480 TGTCAGCCCACCAAAGCC 60.203 61.111 0.00 0.00 0.00 4.35
1795 2429 0.463295 CGCTCTGGCTCCATGTTGAT 60.463 55.000 0.00 0.00 36.09 2.57
1815 2453 4.172505 CGACTGAGATAGCATATCCAAGC 58.827 47.826 0.00 0.00 0.00 4.01
1863 2501 2.018542 TACTACATGCGAACTTGGGC 57.981 50.000 0.00 0.00 0.00 5.36
2094 2736 1.547675 GGAAACAGGGTCAATGGAGCA 60.548 52.381 0.91 0.00 43.32 4.26
2095 2737 1.177401 GGAAACAGGGTCAATGGAGC 58.823 55.000 0.00 0.00 40.81 4.70
2135 2777 5.981088 ACAGGATCTGCAGACTATATCAG 57.019 43.478 20.97 10.88 34.37 2.90
2136 2778 7.671398 TCAATACAGGATCTGCAGACTATATCA 59.329 37.037 20.97 2.19 34.37 2.15
2207 2849 5.752472 ACATCATCATCGTCATCAGAAGAAC 59.248 40.000 0.00 0.00 35.90 3.01
2464 3109 1.338769 GGCAGGAGTTCCGTACAACAT 60.339 52.381 0.00 0.00 42.08 2.71
2471 3116 2.852075 TTGGGGCAGGAGTTCCGT 60.852 61.111 0.00 0.00 42.08 4.69
2480 3125 1.135527 CAGCATAACATGTTGGGGCAG 59.864 52.381 21.42 13.63 37.77 4.85
2485 3130 3.695556 TCATGGACAGCATAACATGTTGG 59.304 43.478 21.42 13.68 44.52 3.77
2486 3131 4.968812 TCATGGACAGCATAACATGTTG 57.031 40.909 21.42 7.28 45.53 3.33
2487 3132 4.951715 ACATCATGGACAGCATAACATGTT 59.048 37.500 16.68 16.68 41.01 2.71
2488 3133 4.529897 ACATCATGGACAGCATAACATGT 58.470 39.130 0.00 0.00 41.01 3.21
2494 3139 6.976934 TTCTAGTACATCATGGACAGCATA 57.023 37.500 1.88 0.00 32.29 3.14
2496 3141 5.675684 TTTCTAGTACATCATGGACAGCA 57.324 39.130 1.88 0.00 32.29 4.41
2524 3170 8.208718 TCCATACAAATTTACTGACATAGCAC 57.791 34.615 0.00 0.00 0.00 4.40
2547 3193 3.347216 ACTGCATGTTAGTGGTTCATCC 58.653 45.455 4.29 0.00 0.00 3.51
2592 3238 2.279173 AGAGAAGGCACCCCTGTTATT 58.721 47.619 0.00 0.00 41.90 1.40
2602 3248 5.163612 ACAAAGAAACTGAAAGAGAAGGCAC 60.164 40.000 0.00 0.00 37.43 5.01
2607 3253 5.895636 TGCACAAAGAAACTGAAAGAGAA 57.104 34.783 0.00 0.00 37.43 2.87
2658 3313 6.258727 AGACAATTCATTTCGTCGATATTGCT 59.741 34.615 0.00 2.19 33.56 3.91
2669 3324 6.845302 TGATTCAGGAAGACAATTCATTTCG 58.155 36.000 0.00 0.00 0.00 3.46
2742 3397 1.352687 TGTGCCTGGCAGTATTACCAA 59.647 47.619 24.10 0.00 40.08 3.67
2795 3450 2.671396 GTGCGGACATAGTAACCAGTTG 59.329 50.000 0.63 0.00 0.00 3.16
2799 3454 3.688694 AAAGTGCGGACATAGTAACCA 57.311 42.857 10.52 0.00 0.00 3.67
2806 3461 5.180492 CCAACTTCTTAAAAGTGCGGACATA 59.820 40.000 10.52 0.00 0.00 2.29
2812 3467 3.001939 ACGACCAACTTCTTAAAAGTGCG 59.998 43.478 0.00 0.00 0.00 5.34
2813 3468 4.034742 TGACGACCAACTTCTTAAAAGTGC 59.965 41.667 0.00 0.00 0.00 4.40
2814 3469 5.064198 TGTGACGACCAACTTCTTAAAAGTG 59.936 40.000 0.00 0.00 0.00 3.16
2815 3470 5.180271 TGTGACGACCAACTTCTTAAAAGT 58.820 37.500 0.00 0.00 0.00 2.66
2816 3471 5.728351 TGTGACGACCAACTTCTTAAAAG 57.272 39.130 0.00 0.00 0.00 2.27
2817 3472 5.587043 ACATGTGACGACCAACTTCTTAAAA 59.413 36.000 0.00 0.00 0.00 1.52
2818 3473 5.120399 ACATGTGACGACCAACTTCTTAAA 58.880 37.500 0.00 0.00 0.00 1.52
2819 3474 4.699637 ACATGTGACGACCAACTTCTTAA 58.300 39.130 0.00 0.00 0.00 1.85
2820 3475 4.330944 ACATGTGACGACCAACTTCTTA 57.669 40.909 0.00 0.00 0.00 2.10
2821 3476 3.194005 ACATGTGACGACCAACTTCTT 57.806 42.857 0.00 0.00 0.00 2.52
2822 3477 2.910688 ACATGTGACGACCAACTTCT 57.089 45.000 0.00 0.00 0.00 2.85
2823 3478 4.056050 AGTAACATGTGACGACCAACTTC 58.944 43.478 7.73 0.00 0.00 3.01
2824 3479 3.807622 CAGTAACATGTGACGACCAACTT 59.192 43.478 7.73 0.00 0.00 2.66
2825 3480 3.181469 ACAGTAACATGTGACGACCAACT 60.181 43.478 7.73 0.00 30.46 3.16
2826 3481 3.128349 ACAGTAACATGTGACGACCAAC 58.872 45.455 7.73 0.00 30.46 3.77
2827 3482 3.462483 ACAGTAACATGTGACGACCAA 57.538 42.857 7.73 0.00 30.46 3.67
2828 3483 3.462483 AACAGTAACATGTGACGACCA 57.538 42.857 7.73 0.00 32.52 4.02
2829 3484 3.805422 TGAAACAGTAACATGTGACGACC 59.195 43.478 7.73 0.00 32.52 4.79
2830 3485 5.006358 ACTTGAAACAGTAACATGTGACGAC 59.994 40.000 7.73 0.43 32.52 4.34
2831 3486 5.113383 ACTTGAAACAGTAACATGTGACGA 58.887 37.500 7.73 0.00 32.52 4.20
2832 3487 5.403897 ACTTGAAACAGTAACATGTGACG 57.596 39.130 7.73 5.77 32.52 4.35
2833 3488 7.247728 TCAAACTTGAAACAGTAACATGTGAC 58.752 34.615 5.04 5.04 33.55 3.67
2834 3489 7.384439 TCAAACTTGAAACAGTAACATGTGA 57.616 32.000 0.00 0.00 33.55 3.58
2848 3503 9.868277 ACATATTTCAGTTGTTTCAAACTTGAA 57.132 25.926 1.10 6.59 44.78 2.69
2849 3504 9.515020 GACATATTTCAGTTGTTTCAAACTTGA 57.485 29.630 1.10 0.70 38.34 3.02
2850 3505 8.755018 GGACATATTTCAGTTGTTTCAAACTTG 58.245 33.333 1.10 0.00 38.34 3.16
2851 3506 8.474025 TGGACATATTTCAGTTGTTTCAAACTT 58.526 29.630 1.10 0.00 38.34 2.66
2852 3507 7.920682 GTGGACATATTTCAGTTGTTTCAAACT 59.079 33.333 1.10 0.00 41.08 2.66
2853 3508 7.096640 CGTGGACATATTTCAGTTGTTTCAAAC 60.097 37.037 0.00 0.00 0.00 2.93
2854 3509 6.915300 CGTGGACATATTTCAGTTGTTTCAAA 59.085 34.615 0.00 0.00 0.00 2.69
2855 3510 6.038825 ACGTGGACATATTTCAGTTGTTTCAA 59.961 34.615 0.00 0.00 0.00 2.69
2856 3511 5.529430 ACGTGGACATATTTCAGTTGTTTCA 59.471 36.000 0.00 0.00 0.00 2.69
2857 3512 5.997385 ACGTGGACATATTTCAGTTGTTTC 58.003 37.500 0.00 0.00 0.00 2.78
2858 3513 7.148306 GGATACGTGGACATATTTCAGTTGTTT 60.148 37.037 0.00 0.00 0.00 2.83
2859 3514 6.315393 GGATACGTGGACATATTTCAGTTGTT 59.685 38.462 0.00 0.00 0.00 2.83
2860 3515 5.815740 GGATACGTGGACATATTTCAGTTGT 59.184 40.000 0.00 0.00 0.00 3.32
2861 3516 5.236478 GGGATACGTGGACATATTTCAGTTG 59.764 44.000 0.00 0.00 37.60 3.16
2862 3517 5.130477 AGGGATACGTGGACATATTTCAGTT 59.870 40.000 0.00 0.00 37.60 3.16
2863 3518 4.654262 AGGGATACGTGGACATATTTCAGT 59.346 41.667 0.00 0.00 37.60 3.41
2864 3519 5.215252 AGGGATACGTGGACATATTTCAG 57.785 43.478 0.00 0.00 37.60 3.02
2877 3532 5.879223 CCTATCTATCGTTACAGGGATACGT 59.121 44.000 0.00 0.00 36.70 3.57
2878 3533 5.220815 GCCTATCTATCGTTACAGGGATACG 60.221 48.000 0.00 0.00 36.67 3.06
2879 3534 5.651139 TGCCTATCTATCGTTACAGGGATAC 59.349 44.000 0.00 0.00 0.00 2.24
2880 3535 5.823312 TGCCTATCTATCGTTACAGGGATA 58.177 41.667 0.00 0.00 0.00 2.59
2881 3536 4.673968 TGCCTATCTATCGTTACAGGGAT 58.326 43.478 0.00 0.00 0.00 3.85
2882 3537 4.108501 TGCCTATCTATCGTTACAGGGA 57.891 45.455 0.00 0.00 0.00 4.20
2883 3538 5.886474 TCTATGCCTATCTATCGTTACAGGG 59.114 44.000 0.00 0.00 0.00 4.45
2884 3539 7.575414 ATCTATGCCTATCTATCGTTACAGG 57.425 40.000 0.00 0.00 0.00 4.00
2899 3554 9.780186 GGAAATACAGTAAGTTTATCTATGCCT 57.220 33.333 0.00 0.00 0.00 4.75
2900 3555 9.555727 TGGAAATACAGTAAGTTTATCTATGCC 57.444 33.333 0.00 0.00 0.00 4.40
2920 3575 9.341078 GGCATCCAATAAACAATATTTGGAAAT 57.659 29.630 8.08 0.00 34.12 2.17
2921 3576 8.324306 TGGCATCCAATAAACAATATTTGGAAA 58.676 29.630 8.08 0.00 34.12 3.13
2922 3577 7.768120 GTGGCATCCAATAAACAATATTTGGAA 59.232 33.333 8.08 0.00 34.18 3.53
2923 3578 7.271511 GTGGCATCCAATAAACAATATTTGGA 58.728 34.615 6.73 6.73 34.18 3.53
2924 3579 6.200665 CGTGGCATCCAATAAACAATATTTGG 59.799 38.462 0.00 0.00 34.18 3.28
2925 3580 6.292274 GCGTGGCATCCAATAAACAATATTTG 60.292 38.462 0.00 0.00 34.18 2.32
2926 3581 5.752955 GCGTGGCATCCAATAAACAATATTT 59.247 36.000 0.00 0.00 34.18 1.40
2927 3582 5.068987 AGCGTGGCATCCAATAAACAATATT 59.931 36.000 0.00 0.00 34.18 1.28
2928 3583 4.584325 AGCGTGGCATCCAATAAACAATAT 59.416 37.500 0.00 0.00 34.18 1.28
2929 3584 3.951037 AGCGTGGCATCCAATAAACAATA 59.049 39.130 0.00 0.00 34.18 1.90
2930 3585 2.760092 AGCGTGGCATCCAATAAACAAT 59.240 40.909 0.00 0.00 34.18 2.71
2931 3586 2.166829 AGCGTGGCATCCAATAAACAA 58.833 42.857 0.00 0.00 34.18 2.83
2932 3587 1.832883 AGCGTGGCATCCAATAAACA 58.167 45.000 0.00 0.00 34.18 2.83
2933 3588 5.682943 TTATAGCGTGGCATCCAATAAAC 57.317 39.130 0.00 0.00 34.18 2.01
2934 3589 6.892658 AATTATAGCGTGGCATCCAATAAA 57.107 33.333 0.00 0.00 34.18 1.40
2935 3590 6.892658 AAATTATAGCGTGGCATCCAATAA 57.107 33.333 0.00 0.00 34.18 1.40
2936 3591 6.892658 AAAATTATAGCGTGGCATCCAATA 57.107 33.333 0.00 0.00 34.18 1.90
2937 3592 5.789643 AAAATTATAGCGTGGCATCCAAT 57.210 34.783 0.00 0.00 34.18 3.16
2938 3593 5.590530 AAAAATTATAGCGTGGCATCCAA 57.409 34.783 0.00 0.00 34.18 3.53
2994 3649 9.015577 CAAGCAACTTATTTTAAACGAGTTTGA 57.984 29.630 11.09 0.39 34.23 2.69
2995 3650 8.265998 CCAAGCAACTTATTTTAAACGAGTTTG 58.734 33.333 11.09 4.95 34.23 2.93
2996 3651 8.192110 TCCAAGCAACTTATTTTAAACGAGTTT 58.808 29.630 6.46 6.46 36.63 2.66
2999 3654 7.581476 TCTCCAAGCAACTTATTTTAAACGAG 58.419 34.615 0.00 0.00 0.00 4.18
3129 4153 5.830912 AGACAACTTGATTCATCGCAAAAA 58.169 33.333 0.00 0.00 0.00 1.94
3130 4154 5.437289 AGACAACTTGATTCATCGCAAAA 57.563 34.783 0.00 0.00 0.00 2.44
3131 4155 5.437289 AAGACAACTTGATTCATCGCAAA 57.563 34.783 0.00 0.00 34.80 3.68
3132 4156 5.437289 AAAGACAACTTGATTCATCGCAA 57.563 34.783 0.00 0.00 36.39 4.85
3133 4157 6.741992 ATAAAGACAACTTGATTCATCGCA 57.258 33.333 0.00 0.00 36.39 5.10
3134 4158 9.554724 TTTAATAAAGACAACTTGATTCATCGC 57.445 29.630 0.00 0.00 38.01 4.58
3164 4188 3.003689 CCACCAACAGACAAAGATGACAC 59.996 47.826 0.00 0.00 0.00 3.67
3167 4191 3.855255 TCCACCAACAGACAAAGATGA 57.145 42.857 0.00 0.00 0.00 2.92
3171 4195 8.511604 AGATATTTATCCACCAACAGACAAAG 57.488 34.615 0.00 0.00 33.17 2.77
3227 4252 6.349611 CCCCACAGAAGAATATGTTTGAAGTG 60.350 42.308 0.00 0.00 0.00 3.16
3228 4253 5.711976 CCCCACAGAAGAATATGTTTGAAGT 59.288 40.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.