Multiple sequence alignment - TraesCS3D01G028900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G028900 chr3D 100.000 4295 0 0 1 4295 10452839 10457133 0.000000e+00 7932.0
1 TraesCS3D01G028900 chr3A 93.884 2093 91 15 1962 4043 16631447 16633513 0.000000e+00 3121.0
2 TraesCS3D01G028900 chr3A 89.898 980 46 21 903 1860 16629763 16630711 0.000000e+00 1212.0
3 TraesCS3D01G028900 chr3A 97.115 416 8 3 1649 2061 16630978 16631392 0.000000e+00 699.0
4 TraesCS3D01G028900 chr3A 93.578 109 1 3 635 742 16629182 16629285 1.600000e-34 158.0
5 TraesCS3D01G028900 chr3A 86.517 89 7 4 1970 2053 16630838 16630926 4.570000e-15 93.5
6 TraesCS3D01G028900 chr3A 84.286 70 3 2 740 809 16629621 16629682 1.290000e-05 62.1
7 TraesCS3D01G028900 chr3B 93.240 2145 102 18 1916 4043 26753114 26750996 0.000000e+00 3118.0
8 TraesCS3D01G028900 chr3B 93.041 1552 70 21 1985 3519 14525756 14524226 0.000000e+00 2233.0
9 TraesCS3D01G028900 chr3B 85.223 1191 79 42 590 1749 14526912 14525788 0.000000e+00 1134.0
10 TraesCS3D01G028900 chr3B 83.834 1299 78 59 589 1853 26754217 26753017 0.000000e+00 1114.0
11 TraesCS3D01G028900 chr3B 79.173 677 91 28 3639 4294 14524191 14523544 1.430000e-114 424.0
12 TraesCS3D01G028900 chr3B 92.683 123 9 0 466 588 560597563 560597441 1.230000e-40 178.0
13 TraesCS3D01G028900 chr3B 76.508 315 43 12 1 284 26754852 26754538 4.480000e-30 143.0
14 TraesCS3D01G028900 chr2B 89.116 1176 126 2 2125 3299 703623807 703622633 0.000000e+00 1461.0
15 TraesCS3D01G028900 chr2B 73.919 763 130 50 1011 1756 703624675 703623965 4.290000e-60 243.0
16 TraesCS3D01G028900 chr2A 89.003 1173 127 2 2125 3296 718384312 718383141 0.000000e+00 1450.0
17 TraesCS3D01G028900 chr2A 86.873 518 55 9 2780 3296 1608659 1609164 6.230000e-158 568.0
18 TraesCS3D01G028900 chr2A 94.488 127 7 0 463 589 66088817 66088691 3.390000e-46 196.0
19 TraesCS3D01G028900 chr2A 83.721 215 17 10 1011 1225 718385188 718384992 2.040000e-43 187.0
20 TraesCS3D01G028900 chr2A 92.126 127 10 0 464 590 617004150 617004276 3.410000e-41 180.0
21 TraesCS3D01G028900 chr2D 88.776 1176 130 2 2125 3299 584257378 584256204 0.000000e+00 1439.0
22 TraesCS3D01G028900 chr2D 86.767 529 60 6 2780 3299 646462258 646461731 8.010000e-162 580.0
23 TraesCS3D01G028900 chr2D 75.331 604 101 33 1011 1598 584258230 584257659 3.320000e-61 246.0
24 TraesCS3D01G028900 chr7B 80.424 1180 213 15 2125 3295 162779681 162780851 0.000000e+00 883.0
25 TraesCS3D01G028900 chr7B 81.875 160 15 7 3896 4047 679005080 679005233 5.830000e-24 122.0
26 TraesCS3D01G028900 chr7A 79.983 1179 220 14 2124 3294 207901381 207900211 0.000000e+00 856.0
27 TraesCS3D01G028900 chr7A 81.410 156 16 6 3896 4043 17249721 17249871 9.760000e-22 115.0
28 TraesCS3D01G028900 chr7D 79.334 1171 222 17 2131 3291 198622862 198621702 0.000000e+00 804.0
29 TraesCS3D01G028900 chr7D 92.800 125 9 0 464 588 185770797 185770673 9.490000e-42 182.0
30 TraesCS3D01G028900 chrUn 86.494 696 56 15 3359 4043 291515020 291514352 0.000000e+00 730.0
31 TraesCS3D01G028900 chrUn 87.352 506 60 2 2791 3296 337092349 337092850 1.040000e-160 577.0
32 TraesCS3D01G028900 chr6B 86.494 696 56 15 3359 4043 716183028 716182360 0.000000e+00 730.0
33 TraesCS3D01G028900 chr5A 92.363 419 26 5 3359 3775 614151945 614151531 3.700000e-165 592.0
34 TraesCS3D01G028900 chr5A 81.699 153 15 7 3899 4043 614151480 614151333 9.760000e-22 115.0
35 TraesCS3D01G028900 chr1B 92.363 419 26 5 3359 3775 329043346 329043760 3.700000e-165 592.0
36 TraesCS3D01G028900 chr1B 92.124 419 27 5 3359 3775 47342130 47342544 1.720000e-163 586.0
37 TraesCS3D01G028900 chr1B 92.124 419 27 5 3359 3775 541799671 541799257 1.720000e-163 586.0
38 TraesCS3D01G028900 chr1B 82.051 156 15 6 3896 4043 47342592 47342742 2.100000e-23 121.0
39 TraesCS3D01G028900 chr1B 82.353 153 14 6 3899 4043 543959554 543959407 2.100000e-23 121.0
40 TraesCS3D01G028900 chr1B 81.410 156 16 6 3896 4043 329043808 329043958 9.760000e-22 115.0
41 TraesCS3D01G028900 chr1B 81.699 153 15 6 3899 4043 541799206 541799059 9.760000e-22 115.0
42 TraesCS3D01G028900 chr1A 92.124 419 27 5 3359 3775 392759075 392758661 1.720000e-163 586.0
43 TraesCS3D01G028900 chr1A 93.277 119 8 0 470 588 471792049 471791931 4.410000e-40 176.0
44 TraesCS3D01G028900 chr1A 82.353 153 14 6 3899 4043 392758610 392758463 2.100000e-23 121.0
45 TraesCS3D01G028900 chr1A 81.410 156 16 6 3896 4043 555143522 555143672 9.760000e-22 115.0
46 TraesCS3D01G028900 chr1D 95.968 124 5 0 465 588 413224857 413224734 7.280000e-48 202.0
47 TraesCS3D01G028900 chr6A 94.215 121 7 0 470 590 585963250 585963370 7.330000e-43 185.0
48 TraesCS3D01G028900 chr6A 94.118 119 7 0 470 588 116339351 116339233 9.490000e-42 182.0
49 TraesCS3D01G028900 chr4B 92.913 127 9 0 463 589 12626035 12626161 7.330000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G028900 chr3D 10452839 10457133 4294 False 7932.000000 7932 100.000000 1 4295 1 chr3D.!!$F1 4294
1 TraesCS3D01G028900 chr3A 16629182 16633513 4331 False 890.933333 3121 90.879667 635 4043 6 chr3A.!!$F1 3408
2 TraesCS3D01G028900 chr3B 26750996 26754852 3856 True 1458.333333 3118 84.527333 1 4043 3 chr3B.!!$R3 4042
3 TraesCS3D01G028900 chr3B 14523544 14526912 3368 True 1263.666667 2233 85.812333 590 4294 3 chr3B.!!$R2 3704
4 TraesCS3D01G028900 chr2B 703622633 703624675 2042 True 852.000000 1461 81.517500 1011 3299 2 chr2B.!!$R1 2288
5 TraesCS3D01G028900 chr2A 718383141 718385188 2047 True 818.500000 1450 86.362000 1011 3296 2 chr2A.!!$R2 2285
6 TraesCS3D01G028900 chr2A 1608659 1609164 505 False 568.000000 568 86.873000 2780 3296 1 chr2A.!!$F1 516
7 TraesCS3D01G028900 chr2D 584256204 584258230 2026 True 842.500000 1439 82.053500 1011 3299 2 chr2D.!!$R2 2288
8 TraesCS3D01G028900 chr2D 646461731 646462258 527 True 580.000000 580 86.767000 2780 3299 1 chr2D.!!$R1 519
9 TraesCS3D01G028900 chr7B 162779681 162780851 1170 False 883.000000 883 80.424000 2125 3295 1 chr7B.!!$F1 1170
10 TraesCS3D01G028900 chr7A 207900211 207901381 1170 True 856.000000 856 79.983000 2124 3294 1 chr7A.!!$R1 1170
11 TraesCS3D01G028900 chr7D 198621702 198622862 1160 True 804.000000 804 79.334000 2131 3291 1 chr7D.!!$R2 1160
12 TraesCS3D01G028900 chrUn 291514352 291515020 668 True 730.000000 730 86.494000 3359 4043 1 chrUn.!!$R1 684
13 TraesCS3D01G028900 chrUn 337092349 337092850 501 False 577.000000 577 87.352000 2791 3296 1 chrUn.!!$F1 505
14 TraesCS3D01G028900 chr6B 716182360 716183028 668 True 730.000000 730 86.494000 3359 4043 1 chr6B.!!$R1 684
15 TraesCS3D01G028900 chr5A 614151333 614151945 612 True 353.500000 592 87.031000 3359 4043 2 chr5A.!!$R1 684
16 TraesCS3D01G028900 chr1B 47342130 47342742 612 False 353.500000 586 87.087500 3359 4043 2 chr1B.!!$F1 684
17 TraesCS3D01G028900 chr1B 329043346 329043958 612 False 353.500000 592 86.886500 3359 4043 2 chr1B.!!$F2 684
18 TraesCS3D01G028900 chr1B 541799059 541799671 612 True 350.500000 586 86.911500 3359 4043 2 chr1B.!!$R2 684
19 TraesCS3D01G028900 chr1A 392758463 392759075 612 True 353.500000 586 87.238500 3359 4043 2 chr1A.!!$R2 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 741 0.036388 CCGTTCTACCACTGGCATGT 60.036 55.0 0.0 0.0 0.00 3.21 F
895 1478 0.038310 CCCCCACTTCCACCTTCTTC 59.962 60.0 0.0 0.0 0.00 2.87 F
1758 2482 0.188342 AATTGGTTGCTCCCACCACT 59.812 50.0 0.0 0.0 33.14 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 3267 0.032217 AAGTGGGCATTATGGTGGGG 60.032 55.000 0.0 0.0 0.0 4.96 R
1905 3268 1.341877 TGAAGTGGGCATTATGGTGGG 60.342 52.381 0.0 0.0 0.0 4.61 R
3689 5301 0.314302 ACTTCTCCACCTTCGACACG 59.686 55.000 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.264719 TCTAGTAACTATCATTTGCATCATGTG 57.735 33.333 6.35 0.00 0.00 3.21
160 181 5.361571 TCACGAAGTATTTATGCTACCCTCA 59.638 40.000 0.00 0.00 41.61 3.86
161 182 6.041637 TCACGAAGTATTTATGCTACCCTCAT 59.958 38.462 0.00 0.00 41.61 2.90
162 183 6.706270 CACGAAGTATTTATGCTACCCTCATT 59.294 38.462 0.00 0.00 41.61 2.57
163 184 6.929606 ACGAAGTATTTATGCTACCCTCATTC 59.070 38.462 0.00 0.00 41.94 2.67
164 185 6.089551 CGAAGTATTTATGCTACCCTCATTCG 59.910 42.308 0.00 0.00 0.00 3.34
168 189 1.056700 ATGCTACCCTCATTCGCCCT 61.057 55.000 0.00 0.00 0.00 5.19
169 190 0.397957 TGCTACCCTCATTCGCCCTA 60.398 55.000 0.00 0.00 0.00 3.53
170 191 0.318762 GCTACCCTCATTCGCCCTAG 59.681 60.000 0.00 0.00 0.00 3.02
171 192 0.318762 CTACCCTCATTCGCCCTAGC 59.681 60.000 0.00 0.00 0.00 3.42
173 194 0.105658 ACCCTCATTCGCCCTAGCTA 60.106 55.000 0.00 0.00 36.60 3.32
174 195 0.605589 CCCTCATTCGCCCTAGCTAG 59.394 60.000 14.20 14.20 36.60 3.42
189 213 1.410850 GCTAGCTAGGGCCACCATGA 61.411 60.000 22.10 0.00 40.13 3.07
193 217 0.538287 GCTAGGGCCACCATGATTCC 60.538 60.000 6.18 0.00 40.13 3.01
217 241 2.674380 GGCCCTGGAAGCAGTGTG 60.674 66.667 0.00 0.00 0.00 3.82
223 247 0.397941 CTGGAAGCAGTGTGGGAAGA 59.602 55.000 0.00 0.00 0.00 2.87
237 261 2.978978 TGGGAAGAAGTTGGAGATGACA 59.021 45.455 0.00 0.00 0.00 3.58
240 264 4.566488 GGGAAGAAGTTGGAGATGACATGT 60.566 45.833 0.00 0.00 0.00 3.21
241 265 4.394300 GGAAGAAGTTGGAGATGACATGTG 59.606 45.833 1.15 0.00 0.00 3.21
242 266 4.630644 AGAAGTTGGAGATGACATGTGT 57.369 40.909 1.15 0.00 0.00 3.72
243 267 5.745312 AGAAGTTGGAGATGACATGTGTA 57.255 39.130 1.15 0.00 0.00 2.90
245 269 5.247110 AGAAGTTGGAGATGACATGTGTACT 59.753 40.000 1.15 0.00 0.00 2.73
251 283 4.867047 GGAGATGACATGTGTACTCAGTTG 59.133 45.833 1.15 0.88 0.00 3.16
259 291 4.882842 TGTGTACTCAGTTGGATAAGCA 57.117 40.909 0.00 0.00 0.00 3.91
264 296 4.558226 ACTCAGTTGGATAAGCATGTGA 57.442 40.909 0.00 0.00 0.00 3.58
268 300 3.567164 CAGTTGGATAAGCATGTGATCCC 59.433 47.826 15.73 4.95 38.75 3.85
286 318 2.433868 CCGGTCGGGATTGTACTATG 57.566 55.000 0.74 0.00 38.47 2.23
287 319 1.958579 CCGGTCGGGATTGTACTATGA 59.041 52.381 0.74 0.00 38.47 2.15
288 320 2.030185 CCGGTCGGGATTGTACTATGAG 60.030 54.545 0.74 0.00 38.47 2.90
289 321 2.030185 CGGTCGGGATTGTACTATGAGG 60.030 54.545 0.00 0.00 0.00 3.86
290 322 2.963782 GGTCGGGATTGTACTATGAGGT 59.036 50.000 0.00 0.00 0.00 3.85
291 323 3.243771 GGTCGGGATTGTACTATGAGGTG 60.244 52.174 0.00 0.00 0.00 4.00
294 326 3.492656 CGGGATTGTACTATGAGGTGTGG 60.493 52.174 0.00 0.00 0.00 4.17
295 327 3.454812 GGGATTGTACTATGAGGTGTGGT 59.545 47.826 0.00 0.00 0.00 4.16
296 328 4.443034 GGGATTGTACTATGAGGTGTGGTC 60.443 50.000 0.00 0.00 0.00 4.02
297 329 4.161565 GGATTGTACTATGAGGTGTGGTCA 59.838 45.833 0.00 0.00 0.00 4.02
298 330 4.801330 TTGTACTATGAGGTGTGGTCAG 57.199 45.455 0.00 0.00 0.00 3.51
299 331 3.774734 TGTACTATGAGGTGTGGTCAGT 58.225 45.455 0.00 0.00 0.00 3.41
300 332 4.157246 TGTACTATGAGGTGTGGTCAGTT 58.843 43.478 0.00 0.00 0.00 3.16
301 333 5.326900 TGTACTATGAGGTGTGGTCAGTTA 58.673 41.667 0.00 0.00 0.00 2.24
302 334 5.417894 TGTACTATGAGGTGTGGTCAGTTAG 59.582 44.000 0.00 0.00 0.00 2.34
303 335 3.769844 ACTATGAGGTGTGGTCAGTTAGG 59.230 47.826 0.00 0.00 0.00 2.69
304 336 2.097110 TGAGGTGTGGTCAGTTAGGT 57.903 50.000 0.00 0.00 0.00 3.08
305 337 3.247948 TGAGGTGTGGTCAGTTAGGTA 57.752 47.619 0.00 0.00 0.00 3.08
306 338 3.578978 TGAGGTGTGGTCAGTTAGGTAA 58.421 45.455 0.00 0.00 0.00 2.85
309 341 3.712733 AGGTGTGGTCAGTTAGGTAAACA 59.287 43.478 0.00 0.00 40.83 2.83
310 342 4.349930 AGGTGTGGTCAGTTAGGTAAACAT 59.650 41.667 0.00 0.00 40.83 2.71
360 586 4.778534 ATGTGCATTGAGAAAAGGACAG 57.221 40.909 0.00 0.00 35.82 3.51
362 588 3.953612 TGTGCATTGAGAAAAGGACAGTT 59.046 39.130 0.00 0.00 0.00 3.16
395 621 4.453480 TTTTTGATTGAGGGAGGACAGT 57.547 40.909 0.00 0.00 0.00 3.55
396 622 5.576563 TTTTTGATTGAGGGAGGACAGTA 57.423 39.130 0.00 0.00 0.00 2.74
397 623 4.826274 TTTGATTGAGGGAGGACAGTAG 57.174 45.455 0.00 0.00 0.00 2.57
398 624 2.752030 TGATTGAGGGAGGACAGTAGG 58.248 52.381 0.00 0.00 0.00 3.18
399 625 2.314852 TGATTGAGGGAGGACAGTAGGA 59.685 50.000 0.00 0.00 0.00 2.94
400 626 3.051803 TGATTGAGGGAGGACAGTAGGAT 60.052 47.826 0.00 0.00 0.00 3.24
401 627 2.461300 TGAGGGAGGACAGTAGGATG 57.539 55.000 0.00 0.00 0.00 3.51
402 628 1.646447 TGAGGGAGGACAGTAGGATGT 59.354 52.381 0.00 0.00 35.68 3.06
422 648 3.747010 TGTCGGTATAACATTTTGCGTGT 59.253 39.130 0.00 0.00 0.00 4.49
427 653 3.569250 ATAACATTTTGCGTGTGTCCC 57.431 42.857 0.00 0.00 0.00 4.46
428 654 1.398692 AACATTTTGCGTGTGTCCCT 58.601 45.000 0.00 0.00 0.00 4.20
429 655 2.264005 ACATTTTGCGTGTGTCCCTA 57.736 45.000 0.00 0.00 0.00 3.53
430 656 2.790433 ACATTTTGCGTGTGTCCCTAT 58.210 42.857 0.00 0.00 0.00 2.57
431 657 2.487762 ACATTTTGCGTGTGTCCCTATG 59.512 45.455 0.00 0.00 0.00 2.23
432 658 1.529226 TTTTGCGTGTGTCCCTATGG 58.471 50.000 0.00 0.00 0.00 2.74
433 659 0.687920 TTTGCGTGTGTCCCTATGGA 59.312 50.000 0.00 0.00 38.75 3.41
434 660 0.908910 TTGCGTGTGTCCCTATGGAT 59.091 50.000 0.00 0.00 44.28 3.41
435 661 1.783071 TGCGTGTGTCCCTATGGATA 58.217 50.000 0.00 0.00 44.28 2.59
436 662 2.325484 TGCGTGTGTCCCTATGGATAT 58.675 47.619 0.00 0.00 44.28 1.63
437 663 2.299013 TGCGTGTGTCCCTATGGATATC 59.701 50.000 0.00 0.00 44.28 1.63
438 664 2.671351 GCGTGTGTCCCTATGGATATCG 60.671 54.545 0.00 0.00 44.28 2.92
439 665 2.817844 CGTGTGTCCCTATGGATATCGA 59.182 50.000 0.00 0.00 44.28 3.59
440 666 3.119814 CGTGTGTCCCTATGGATATCGAG 60.120 52.174 0.00 0.00 44.28 4.04
445 671 3.314307 CCCTATGGATATCGAGGGCTA 57.686 52.381 18.22 0.00 42.28 3.93
452 678 2.358267 GGATATCGAGGGCTATACCACG 59.642 54.545 0.00 0.00 42.05 4.94
456 682 1.666580 GAGGGCTATACCACGCCTC 59.333 63.158 0.00 0.00 45.57 4.70
457 683 1.817911 GAGGGCTATACCACGCCTCC 61.818 65.000 0.00 0.00 45.57 4.30
458 684 2.338984 GGCTATACCACGCCTCCG 59.661 66.667 0.00 0.00 42.98 4.63
460 686 1.007618 GCTATACCACGCCTCCGTC 60.008 63.158 0.00 0.00 46.39 4.79
461 687 1.281960 CTATACCACGCCTCCGTCG 59.718 63.158 0.00 0.00 46.39 5.12
462 688 1.153188 TATACCACGCCTCCGTCGA 60.153 57.895 0.00 0.00 46.39 4.20
463 689 1.439353 TATACCACGCCTCCGTCGAC 61.439 60.000 5.18 5.18 46.39 4.20
474 700 3.510846 CGTCGACCGGAAGAGGAT 58.489 61.111 9.46 0.00 34.73 3.24
475 701 2.699073 CGTCGACCGGAAGAGGATA 58.301 57.895 9.46 0.00 34.73 2.59
476 702 0.307146 CGTCGACCGGAAGAGGATAC 59.693 60.000 9.46 0.00 34.73 2.24
489 715 3.861664 GGATACTCTACCGTTCGGC 57.138 57.895 11.32 0.00 0.00 5.54
490 716 1.027357 GGATACTCTACCGTTCGGCA 58.973 55.000 11.32 0.00 0.00 5.69
491 717 1.001597 GGATACTCTACCGTTCGGCAG 60.002 57.143 11.32 8.13 0.00 4.85
492 718 0.384669 ATACTCTACCGTTCGGCAGC 59.615 55.000 11.32 0.00 0.00 5.25
493 719 1.660560 TACTCTACCGTTCGGCAGCC 61.661 60.000 11.32 0.00 0.00 4.85
494 720 3.718210 CTCTACCGTTCGGCAGCCC 62.718 68.421 5.63 0.00 0.00 5.19
506 732 4.077184 CAGCCCGCCGTTCTACCA 62.077 66.667 0.00 0.00 0.00 3.25
507 733 4.078516 AGCCCGCCGTTCTACCAC 62.079 66.667 0.00 0.00 0.00 4.16
508 734 4.078516 GCCCGCCGTTCTACCACT 62.079 66.667 0.00 0.00 0.00 4.00
509 735 2.125673 CCCGCCGTTCTACCACTG 60.126 66.667 0.00 0.00 0.00 3.66
510 736 2.125673 CCGCCGTTCTACCACTGG 60.126 66.667 0.00 0.00 0.00 4.00
511 737 2.813908 CGCCGTTCTACCACTGGC 60.814 66.667 0.00 0.00 42.29 4.85
512 738 2.345991 GCCGTTCTACCACTGGCA 59.654 61.111 0.00 0.00 45.06 4.92
513 739 1.078426 GCCGTTCTACCACTGGCAT 60.078 57.895 0.00 0.00 45.06 4.40
514 740 1.369091 GCCGTTCTACCACTGGCATG 61.369 60.000 0.00 0.00 45.06 4.06
515 741 0.036388 CCGTTCTACCACTGGCATGT 60.036 55.000 0.00 0.00 0.00 3.21
516 742 1.078709 CGTTCTACCACTGGCATGTG 58.921 55.000 9.29 9.29 37.66 3.21
522 748 2.967397 CACTGGCATGTGGGCTTG 59.033 61.111 8.60 0.00 43.83 4.01
523 749 1.904865 CACTGGCATGTGGGCTTGT 60.905 57.895 8.60 0.00 43.83 3.16
524 750 1.152483 ACTGGCATGTGGGCTTGTT 60.152 52.632 0.00 0.00 43.83 2.83
525 751 1.290955 CTGGCATGTGGGCTTGTTG 59.709 57.895 0.00 0.00 43.83 3.33
526 752 2.162338 CTGGCATGTGGGCTTGTTGG 62.162 60.000 0.00 0.00 43.83 3.77
527 753 2.658422 GCATGTGGGCTTGTTGGG 59.342 61.111 0.00 0.00 0.00 4.12
528 754 1.907807 GCATGTGGGCTTGTTGGGA 60.908 57.895 0.00 0.00 0.00 4.37
529 755 1.470996 GCATGTGGGCTTGTTGGGAA 61.471 55.000 0.00 0.00 0.00 3.97
530 756 0.318120 CATGTGGGCTTGTTGGGAAC 59.682 55.000 0.00 0.00 0.00 3.62
543 769 2.440599 GGAACCTGGCCCACATGT 59.559 61.111 0.00 0.00 0.00 3.21
544 770 1.678970 GGAACCTGGCCCACATGTC 60.679 63.158 0.00 0.00 0.00 3.06
545 771 1.074775 GAACCTGGCCCACATGTCA 59.925 57.895 0.00 0.00 0.00 3.58
546 772 0.962356 GAACCTGGCCCACATGTCAG 60.962 60.000 0.00 0.00 0.00 3.51
547 773 2.753043 CCTGGCCCACATGTCAGC 60.753 66.667 0.00 7.90 0.00 4.26
548 774 3.129502 CTGGCCCACATGTCAGCG 61.130 66.667 0.00 0.00 0.00 5.18
549 775 4.720902 TGGCCCACATGTCAGCGG 62.721 66.667 0.00 2.18 0.00 5.52
553 779 4.720902 CCACATGTCAGCGGCCCA 62.721 66.667 0.00 0.00 0.00 5.36
554 780 2.672651 CACATGTCAGCGGCCCAA 60.673 61.111 0.00 0.00 0.00 4.12
555 781 2.672996 ACATGTCAGCGGCCCAAC 60.673 61.111 0.00 0.00 0.00 3.77
556 782 3.803082 CATGTCAGCGGCCCAACG 61.803 66.667 0.00 0.00 0.00 4.10
557 783 4.329545 ATGTCAGCGGCCCAACGT 62.330 61.111 0.00 0.00 35.98 3.99
558 784 4.980805 TGTCAGCGGCCCAACGTC 62.981 66.667 0.00 0.00 35.98 4.34
559 785 4.980805 GTCAGCGGCCCAACGTCA 62.981 66.667 0.00 0.00 35.98 4.35
560 786 4.980805 TCAGCGGCCCAACGTCAC 62.981 66.667 0.00 0.00 35.98 3.67
563 789 4.382320 GCGGCCCAACGTCACCTA 62.382 66.667 0.00 0.00 35.98 3.08
564 790 2.125673 CGGCCCAACGTCACCTAG 60.126 66.667 0.00 0.00 0.00 3.02
565 791 2.436115 GGCCCAACGTCACCTAGC 60.436 66.667 0.00 0.00 0.00 3.42
566 792 2.813908 GCCCAACGTCACCTAGCG 60.814 66.667 0.00 0.00 0.00 4.26
567 793 2.813908 CCCAACGTCACCTAGCGC 60.814 66.667 0.00 0.00 0.00 5.92
568 794 2.048597 CCAACGTCACCTAGCGCA 60.049 61.111 11.47 0.00 0.00 6.09
569 795 2.094659 CCAACGTCACCTAGCGCAG 61.095 63.158 11.47 4.88 0.00 5.18
587 813 4.459089 GGCAGAGGAGCCGTGTCC 62.459 72.222 0.00 0.00 46.12 4.02
620 856 2.431601 GCGTTCTGCTCTGCTCGT 60.432 61.111 0.00 0.00 41.73 4.18
623 859 1.081108 GTTCTGCTCTGCTCGTCGT 60.081 57.895 0.00 0.00 0.00 4.34
624 860 1.081175 TTCTGCTCTGCTCGTCGTG 60.081 57.895 0.00 0.00 0.00 4.35
626 862 1.799519 CTGCTCTGCTCGTCGTGAC 60.800 63.158 0.00 0.00 0.00 3.67
838 1419 3.078836 CCCGGAGCTTTCCCCGTA 61.079 66.667 0.73 0.00 43.93 4.02
846 1427 1.143073 AGCTTTCCCCGTAATCCCATC 59.857 52.381 0.00 0.00 0.00 3.51
849 1430 0.327673 TTCCCCGTAATCCCATCCCA 60.328 55.000 0.00 0.00 0.00 4.37
890 1473 2.858974 CCACCCCCACTTCCACCT 60.859 66.667 0.00 0.00 0.00 4.00
891 1474 2.469765 CCACCCCCACTTCCACCTT 61.470 63.158 0.00 0.00 0.00 3.50
893 1476 1.072930 ACCCCCACTTCCACCTTCT 60.073 57.895 0.00 0.00 0.00 2.85
895 1478 0.038310 CCCCCACTTCCACCTTCTTC 59.962 60.000 0.00 0.00 0.00 2.87
896 1479 1.068121 CCCCACTTCCACCTTCTTCT 58.932 55.000 0.00 0.00 0.00 2.85
897 1480 2.266279 CCCCACTTCCACCTTCTTCTA 58.734 52.381 0.00 0.00 0.00 2.10
898 1481 2.237392 CCCCACTTCCACCTTCTTCTAG 59.763 54.545 0.00 0.00 0.00 2.43
899 1482 2.237392 CCCACTTCCACCTTCTTCTAGG 59.763 54.545 0.00 0.00 41.31 3.02
900 1483 3.173965 CCACTTCCACCTTCTTCTAGGA 58.826 50.000 0.00 0.00 38.73 2.94
901 1484 3.196685 CCACTTCCACCTTCTTCTAGGAG 59.803 52.174 0.00 0.00 38.73 3.69
957 1555 1.152963 GCCTCGCTCTCTCTCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
984 1587 3.838271 GAGCGCCGACAGATCCCA 61.838 66.667 2.29 0.00 0.00 4.37
1264 1881 2.565834 ACCAATTACTCCGCTGTACTGT 59.434 45.455 1.46 0.00 0.00 3.55
1265 1882 3.765511 ACCAATTACTCCGCTGTACTGTA 59.234 43.478 1.46 0.00 0.00 2.74
1305 1956 5.503031 CGATTCGATCTAACAATTGCTGCTT 60.503 40.000 5.05 0.00 0.00 3.91
1607 2304 3.643199 AAGGGAATCTCTTCTTGAGCC 57.357 47.619 0.00 0.00 42.38 4.70
1608 2305 1.843206 AGGGAATCTCTTCTTGAGCCC 59.157 52.381 0.00 0.00 42.38 5.19
1609 2306 1.843206 GGGAATCTCTTCTTGAGCCCT 59.157 52.381 0.00 0.00 42.38 5.19
1610 2307 2.158827 GGGAATCTCTTCTTGAGCCCTC 60.159 54.545 0.00 0.00 42.38 4.30
1611 2308 2.771372 GGAATCTCTTCTTGAGCCCTCT 59.229 50.000 0.00 0.00 42.38 3.69
1612 2309 3.199727 GGAATCTCTTCTTGAGCCCTCTT 59.800 47.826 0.00 0.00 42.38 2.85
1613 2310 4.324176 GGAATCTCTTCTTGAGCCCTCTTT 60.324 45.833 0.00 0.00 42.38 2.52
1614 2311 4.925390 ATCTCTTCTTGAGCCCTCTTTT 57.075 40.909 0.00 0.00 42.38 2.27
1640 2338 8.880878 TTCTTTTTCTTGGCACCTTAATTAAC 57.119 30.769 0.00 0.00 0.00 2.01
1654 2352 9.771534 CACCTTAATTAACAAATGGAAGGAAAA 57.228 29.630 14.44 0.00 36.34 2.29
1675 2376 5.551760 AACAGAGCAAAATTATCACTCCG 57.448 39.130 0.00 0.00 0.00 4.63
1679 2380 2.945668 AGCAAAATTATCACTCCGAGGC 59.054 45.455 0.00 0.00 0.00 4.70
1680 2381 2.682856 GCAAAATTATCACTCCGAGGCA 59.317 45.455 0.00 0.00 0.00 4.75
1681 2382 3.242870 GCAAAATTATCACTCCGAGGCAG 60.243 47.826 0.00 0.00 0.00 4.85
1682 2383 2.918712 AATTATCACTCCGAGGCAGG 57.081 50.000 0.00 0.00 0.00 4.85
1753 2477 2.252976 GCAAAAATTGGTTGCTCCCA 57.747 45.000 16.22 0.00 46.31 4.37
1754 2478 1.872952 GCAAAAATTGGTTGCTCCCAC 59.127 47.619 16.22 0.00 46.31 4.61
1755 2479 2.493035 CAAAAATTGGTTGCTCCCACC 58.507 47.619 0.00 0.00 33.14 4.61
1756 2480 1.799933 AAAATTGGTTGCTCCCACCA 58.200 45.000 0.00 0.00 33.14 4.17
1757 2481 1.047801 AAATTGGTTGCTCCCACCAC 58.952 50.000 0.00 0.00 33.14 4.16
1758 2482 0.188342 AATTGGTTGCTCCCACCACT 59.812 50.000 0.00 0.00 33.14 4.00
1759 2483 1.072266 ATTGGTTGCTCCCACCACTA 58.928 50.000 0.00 0.00 33.14 2.74
1760 2484 1.072266 TTGGTTGCTCCCACCACTAT 58.928 50.000 0.00 0.00 33.14 2.12
1761 2485 1.072266 TGGTTGCTCCCACCACTATT 58.928 50.000 0.00 0.00 34.77 1.73
1762 2486 1.004277 TGGTTGCTCCCACCACTATTC 59.996 52.381 0.00 0.00 34.77 1.75
1775 2509 5.590259 CCACCACTATTCCCACTTCAATTAG 59.410 44.000 0.00 0.00 0.00 1.73
1855 3218 9.822185 AGAAAAAGAAAATGTGCTACATCTTTT 57.178 25.926 15.58 15.58 42.23 2.27
1869 3232 9.734620 TGCTACATCTTTTTATACATTCAATGC 57.265 29.630 0.00 0.00 0.00 3.56
1870 3233 9.956720 GCTACATCTTTTTATACATTCAATGCT 57.043 29.630 0.00 0.00 0.00 3.79
1879 3242 8.662781 TTTATACATTCAATGCTCTGTACTCC 57.337 34.615 0.00 0.00 0.00 3.85
1880 3243 3.525537 ACATTCAATGCTCTGTACTCCG 58.474 45.455 0.00 0.00 0.00 4.63
1881 3244 2.010145 TTCAATGCTCTGTACTCCGC 57.990 50.000 0.00 0.00 0.00 5.54
1882 3245 0.894835 TCAATGCTCTGTACTCCGCA 59.105 50.000 6.11 6.11 36.75 5.69
1883 3246 1.275010 TCAATGCTCTGTACTCCGCAA 59.725 47.619 7.42 0.00 35.83 4.85
1884 3247 2.093500 TCAATGCTCTGTACTCCGCAAT 60.093 45.455 7.42 0.00 35.83 3.56
1885 3248 2.231215 ATGCTCTGTACTCCGCAATC 57.769 50.000 7.42 0.00 35.83 2.67
1886 3249 1.186200 TGCTCTGTACTCCGCAATCT 58.814 50.000 0.00 0.00 0.00 2.40
1887 3250 1.550524 TGCTCTGTACTCCGCAATCTT 59.449 47.619 0.00 0.00 0.00 2.40
1888 3251 1.929836 GCTCTGTACTCCGCAATCTTG 59.070 52.381 0.00 0.00 0.00 3.02
1889 3252 2.544685 CTCTGTACTCCGCAATCTTGG 58.455 52.381 0.00 0.00 0.00 3.61
1890 3253 1.009829 CTGTACTCCGCAATCTTGGC 58.990 55.000 0.00 0.00 0.00 4.52
1891 3254 0.323302 TGTACTCCGCAATCTTGGCA 59.677 50.000 0.00 0.00 0.00 4.92
1892 3255 1.271108 TGTACTCCGCAATCTTGGCAA 60.271 47.619 0.00 0.00 0.00 4.52
1893 3256 1.810151 GTACTCCGCAATCTTGGCAAA 59.190 47.619 0.00 0.00 0.00 3.68
1894 3257 1.327303 ACTCCGCAATCTTGGCAAAA 58.673 45.000 0.00 0.00 0.00 2.44
1895 3258 1.686052 ACTCCGCAATCTTGGCAAAAA 59.314 42.857 0.00 0.00 0.00 1.94
1896 3259 2.299867 ACTCCGCAATCTTGGCAAAAAT 59.700 40.909 0.00 0.00 0.00 1.82
1897 3260 3.244181 ACTCCGCAATCTTGGCAAAAATT 60.244 39.130 0.00 1.49 0.00 1.82
1898 3261 3.065655 TCCGCAATCTTGGCAAAAATTG 58.934 40.909 21.73 21.73 33.31 2.32
1899 3262 2.160022 CCGCAATCTTGGCAAAAATTGG 59.840 45.455 24.73 18.01 31.33 3.16
1900 3263 2.807392 CGCAATCTTGGCAAAAATTGGT 59.193 40.909 24.73 1.21 31.33 3.67
1901 3264 3.250521 CGCAATCTTGGCAAAAATTGGTT 59.749 39.130 24.73 6.61 31.33 3.67
1902 3265 4.538917 GCAATCTTGGCAAAAATTGGTTG 58.461 39.130 24.73 16.51 31.33 3.77
1907 3270 2.639970 GCAAAAATTGGTTGCCCCC 58.360 52.632 13.63 0.00 44.53 5.40
1908 3271 0.179006 GCAAAAATTGGTTGCCCCCA 60.179 50.000 13.63 0.00 44.53 4.96
1909 3272 1.603456 CAAAAATTGGTTGCCCCCAC 58.397 50.000 0.00 0.00 33.14 4.61
1910 3273 0.476338 AAAAATTGGTTGCCCCCACC 59.524 50.000 0.00 0.00 33.14 4.61
1911 3274 0.695803 AAAATTGGTTGCCCCCACCA 60.696 50.000 0.00 0.00 33.14 4.17
1912 3275 0.475437 AAATTGGTTGCCCCCACCAT 60.475 50.000 0.00 0.00 33.14 3.55
1913 3276 0.415429 AATTGGTTGCCCCCACCATA 59.585 50.000 0.00 0.00 33.14 2.74
1914 3277 0.415429 ATTGGTTGCCCCCACCATAA 59.585 50.000 0.00 0.00 33.14 1.90
1915 3278 0.415429 TTGGTTGCCCCCACCATAAT 59.585 50.000 0.00 0.00 33.14 1.28
1916 3279 0.325110 TGGTTGCCCCCACCATAATG 60.325 55.000 0.00 0.00 0.00 1.90
1917 3280 1.685355 GGTTGCCCCCACCATAATGC 61.685 60.000 0.00 0.00 0.00 3.56
1918 3281 1.382420 TTGCCCCCACCATAATGCC 60.382 57.895 0.00 0.00 0.00 4.40
1919 3282 2.524148 GCCCCCACCATAATGCCC 60.524 66.667 0.00 0.00 0.00 5.36
1920 3283 3.023327 CCCCCACCATAATGCCCA 58.977 61.111 0.00 0.00 0.00 5.36
1921 3284 1.457455 CCCCCACCATAATGCCCAC 60.457 63.158 0.00 0.00 0.00 4.61
1922 3285 1.620259 CCCCACCATAATGCCCACT 59.380 57.895 0.00 0.00 0.00 4.00
1923 3286 0.032217 CCCCACCATAATGCCCACTT 60.032 55.000 0.00 0.00 0.00 3.16
1924 3287 1.402787 CCCACCATAATGCCCACTTC 58.597 55.000 0.00 0.00 0.00 3.01
1925 3288 1.341877 CCCACCATAATGCCCACTTCA 60.342 52.381 0.00 0.00 0.00 3.02
1926 3289 2.026641 CCACCATAATGCCCACTTCAG 58.973 52.381 0.00 0.00 0.00 3.02
1927 3290 2.621407 CCACCATAATGCCCACTTCAGT 60.621 50.000 0.00 0.00 0.00 3.41
1928 3291 3.091545 CACCATAATGCCCACTTCAGTT 58.908 45.455 0.00 0.00 0.00 3.16
1929 3292 4.269183 CACCATAATGCCCACTTCAGTTA 58.731 43.478 0.00 0.00 0.00 2.24
1930 3293 4.704540 CACCATAATGCCCACTTCAGTTAA 59.295 41.667 0.00 0.00 0.00 2.01
1931 3294 5.360714 CACCATAATGCCCACTTCAGTTAAT 59.639 40.000 0.00 0.00 0.00 1.40
1932 3295 5.957774 ACCATAATGCCCACTTCAGTTAATT 59.042 36.000 0.00 0.00 0.00 1.40
1933 3296 6.440328 ACCATAATGCCCACTTCAGTTAATTT 59.560 34.615 0.00 0.00 0.00 1.82
1934 3297 7.038373 ACCATAATGCCCACTTCAGTTAATTTT 60.038 33.333 0.00 0.00 0.00 1.82
1935 3298 7.823799 CCATAATGCCCACTTCAGTTAATTTTT 59.176 33.333 0.00 0.00 0.00 1.94
1978 3341 9.732130 AGTTTTTAGAAATGTGCTAGATCTTCT 57.268 29.630 0.00 0.00 0.00 2.85
2421 3980 2.050714 GTCGTGTTCTCCGTCGCA 60.051 61.111 0.00 0.00 0.00 5.10
2946 4517 2.804090 GTGAACTCCGCCGACGTC 60.804 66.667 5.18 5.18 37.70 4.34
3243 4822 1.800586 CAGGACGTCAAGGTGAACATG 59.199 52.381 18.91 0.00 0.00 3.21
3346 4935 1.955778 CTCACATCACAGCCACCAAAA 59.044 47.619 0.00 0.00 0.00 2.44
3363 4952 5.062058 CACCAAAAACTGTACAACAAGCAAG 59.938 40.000 0.00 0.00 0.00 4.01
3425 5025 0.391661 TTGCTACTACTGCTGCTGCC 60.392 55.000 13.47 0.00 38.71 4.85
3470 5070 4.927049 TGATCAAAAGAGGAGGCTTCAAT 58.073 39.130 0.00 0.00 0.00 2.57
3474 5074 5.819991 TCAAAAGAGGAGGCTTCAATGTAT 58.180 37.500 0.00 0.00 0.00 2.29
3539 5149 4.894784 AGTGGATCGTCTTGTTGTACAAT 58.105 39.130 12.26 0.00 37.48 2.71
3650 5262 5.697473 TCTATGAAAGAGTAGGAGCATCG 57.303 43.478 0.00 0.00 34.37 3.84
3748 5363 1.144913 TGGAAGGAAAGAACCAGTGGG 59.855 52.381 15.21 0.00 41.29 4.61
3766 5381 1.133025 GGGATTGGTGAAATCTGCACG 59.867 52.381 0.00 0.00 43.71 5.34
3777 5392 0.957395 ATCTGCACGCTGGAACCAAG 60.957 55.000 0.00 0.00 0.00 3.61
3797 5412 0.673333 TGCGAATGTGGCGAGAATGT 60.673 50.000 0.00 0.00 0.00 2.71
3810 5426 2.485426 CGAGAATGTTGATGGTTGCTGT 59.515 45.455 0.00 0.00 0.00 4.40
3826 5442 1.003355 TGTTAGCCTGGACTGCTGC 60.003 57.895 0.00 0.00 39.91 5.25
3862 5478 6.942532 TCCTCTATGGTTATTTTCATGTGC 57.057 37.500 0.00 0.00 37.07 4.57
3878 5512 2.901249 TGTGCGGCTTAACCTTATCTC 58.099 47.619 0.00 0.00 35.61 2.75
3879 5513 2.235155 TGTGCGGCTTAACCTTATCTCA 59.765 45.455 0.00 0.00 35.61 3.27
3880 5514 2.866762 GTGCGGCTTAACCTTATCTCAG 59.133 50.000 0.00 0.00 35.61 3.35
3881 5515 2.500098 TGCGGCTTAACCTTATCTCAGT 59.500 45.455 0.00 0.00 35.61 3.41
3882 5516 3.702548 TGCGGCTTAACCTTATCTCAGTA 59.297 43.478 0.00 0.00 35.61 2.74
3883 5517 4.344102 TGCGGCTTAACCTTATCTCAGTAT 59.656 41.667 0.00 0.00 35.61 2.12
3884 5518 4.924462 GCGGCTTAACCTTATCTCAGTATC 59.076 45.833 0.00 0.00 35.61 2.24
3885 5519 5.154932 CGGCTTAACCTTATCTCAGTATCG 58.845 45.833 0.00 0.00 35.61 2.92
3886 5520 5.048921 CGGCTTAACCTTATCTCAGTATCGA 60.049 44.000 0.00 0.00 35.61 3.59
3887 5521 6.514541 CGGCTTAACCTTATCTCAGTATCGAA 60.515 42.308 0.00 0.00 35.61 3.71
3888 5522 6.641723 GGCTTAACCTTATCTCAGTATCGAAC 59.358 42.308 0.00 0.00 34.51 3.95
3889 5523 7.201145 GCTTAACCTTATCTCAGTATCGAACA 58.799 38.462 0.00 0.00 0.00 3.18
3890 5524 7.705325 GCTTAACCTTATCTCAGTATCGAACAA 59.295 37.037 0.00 0.00 0.00 2.83
3891 5525 9.751542 CTTAACCTTATCTCAGTATCGAACAAT 57.248 33.333 0.00 0.00 0.00 2.71
3893 5527 8.425577 AACCTTATCTCAGTATCGAACAATTG 57.574 34.615 3.24 3.24 0.00 2.32
3894 5528 7.556844 ACCTTATCTCAGTATCGAACAATTGT 58.443 34.615 4.92 4.92 0.00 2.71
3895 5529 8.041323 ACCTTATCTCAGTATCGAACAATTGTT 58.959 33.333 23.49 23.49 41.64 2.83
3896 5530 8.331022 CCTTATCTCAGTATCGAACAATTGTTG 58.669 37.037 27.85 18.61 38.56 3.33
3897 5531 5.530519 TCTCAGTATCGAACAATTGTTGC 57.469 39.130 27.85 17.09 38.56 4.17
3929 5568 7.592938 TCAACTTTGTGGCTGTTTAATATGAG 58.407 34.615 0.00 0.00 0.00 2.90
3932 5571 8.040716 ACTTTGTGGCTGTTTAATATGAGTAC 57.959 34.615 0.00 0.00 0.00 2.73
3937 5582 6.018994 GTGGCTGTTTAATATGAGTACCTTCG 60.019 42.308 0.00 0.00 0.00 3.79
3993 5639 6.908870 TTCTATGCACATGTGTTCTATCAC 57.091 37.500 26.01 8.16 38.63 3.06
4007 5653 7.828717 TGTGTTCTATCACATTCCATTACATGT 59.171 33.333 2.69 2.69 42.36 3.21
4039 5690 5.251700 AGGGATGAGAAAAGTGACCACTATT 59.748 40.000 2.78 0.00 41.58 1.73
4042 5693 7.362142 GGGATGAGAAAAGTGACCACTATTTTC 60.362 40.741 14.70 14.70 41.58 2.29
4043 5694 7.174946 GGATGAGAAAAGTGACCACTATTTTCA 59.825 37.037 20.45 14.74 41.58 2.69
4044 5695 7.259290 TGAGAAAAGTGACCACTATTTTCAC 57.741 36.000 20.45 16.78 41.58 3.18
4050 5701 6.681729 AGTGACCACTATTTTCACTAGGAA 57.318 37.500 0.03 0.00 46.45 3.36
4051 5702 7.074653 AGTGACCACTATTTTCACTAGGAAA 57.925 36.000 0.03 0.00 46.45 3.13
4052 5703 7.514721 AGTGACCACTATTTTCACTAGGAAAA 58.485 34.615 16.47 16.47 46.45 2.29
4053 5704 7.444487 AGTGACCACTATTTTCACTAGGAAAAC 59.556 37.037 16.48 7.26 46.45 2.43
4063 5714 7.745620 TTTCACTAGGAAAACTGGAAAGATC 57.254 36.000 0.00 0.00 42.37 2.75
4064 5715 6.688073 TCACTAGGAAAACTGGAAAGATCT 57.312 37.500 0.00 0.00 0.00 2.75
4065 5716 6.467677 TCACTAGGAAAACTGGAAAGATCTG 58.532 40.000 0.00 0.00 0.00 2.90
4067 5718 7.234782 TCACTAGGAAAACTGGAAAGATCTGTA 59.765 37.037 0.00 0.00 0.00 2.74
4069 5720 8.261522 ACTAGGAAAACTGGAAAGATCTGTATC 58.738 37.037 0.00 0.00 0.00 2.24
4071 5722 6.012508 AGGAAAACTGGAAAGATCTGTATCCA 60.013 38.462 18.88 18.88 39.57 3.41
4076 5727 5.762179 TGGAAAGATCTGTATCCAGTGTT 57.238 39.130 17.03 0.00 39.82 3.32
4077 5728 5.491070 TGGAAAGATCTGTATCCAGTGTTG 58.509 41.667 17.03 0.00 39.82 3.33
4078 5729 5.013079 TGGAAAGATCTGTATCCAGTGTTGT 59.987 40.000 17.03 0.00 39.82 3.32
4079 5730 5.582665 GGAAAGATCTGTATCCAGTGTTGTC 59.417 44.000 14.52 0.00 39.82 3.18
4080 5731 6.365970 AAAGATCTGTATCCAGTGTTGTCT 57.634 37.500 0.00 0.00 39.82 3.41
4081 5732 7.363880 GGAAAGATCTGTATCCAGTGTTGTCTA 60.364 40.741 14.52 0.00 39.82 2.59
4083 5734 8.768501 AAGATCTGTATCCAGTGTTGTCTATA 57.231 34.615 0.00 0.00 39.82 1.31
4085 5736 9.019656 AGATCTGTATCCAGTGTTGTCTATATC 57.980 37.037 0.00 0.00 39.82 1.63
4088 5739 9.508642 TCTGTATCCAGTGTTGTCTATATCTAG 57.491 37.037 0.00 0.00 39.82 2.43
4090 5741 9.067986 TGTATCCAGTGTTGTCTATATCTAGTG 57.932 37.037 0.00 0.00 0.00 2.74
4091 5742 9.069082 GTATCCAGTGTTGTCTATATCTAGTGT 57.931 37.037 0.00 0.00 0.00 3.55
4092 5743 7.956328 TCCAGTGTTGTCTATATCTAGTGTT 57.044 36.000 0.00 0.00 0.00 3.32
4093 5744 7.772166 TCCAGTGTTGTCTATATCTAGTGTTG 58.228 38.462 0.00 0.00 0.00 3.33
4136 5787 8.445493 CCTAAATTTGATGAAATTGCACCTTTC 58.555 33.333 3.52 12.08 40.27 2.62
4144 5795 7.394077 TGATGAAATTGCACCTTTCTGAATCTA 59.606 33.333 17.37 1.76 34.43 1.98
4150 5801 6.899393 TGCACCTTTCTGAATCTACAATTT 57.101 33.333 0.00 0.00 0.00 1.82
4151 5802 6.913170 TGCACCTTTCTGAATCTACAATTTC 58.087 36.000 0.00 0.00 0.00 2.17
4154 5805 5.705441 ACCTTTCTGAATCTACAATTTCGCA 59.295 36.000 0.00 0.00 0.00 5.10
4160 5811 7.693952 TCTGAATCTACAATTTCGCATTAACC 58.306 34.615 0.00 0.00 0.00 2.85
4162 5813 7.247728 TGAATCTACAATTTCGCATTAACCAC 58.752 34.615 0.00 0.00 0.00 4.16
4173 5824 4.760227 GCATTAACCACATTGCGATTTC 57.240 40.909 0.00 0.00 0.00 2.17
4179 5830 4.637483 ACCACATTGCGATTTCTTATGG 57.363 40.909 0.00 0.00 0.00 2.74
4191 5842 6.038271 GCGATTTCTTATGGTTACATCAGGTT 59.962 38.462 0.00 0.00 38.53 3.50
4192 5843 7.415206 GCGATTTCTTATGGTTACATCAGGTTT 60.415 37.037 0.00 0.00 38.53 3.27
4193 5844 8.122952 CGATTTCTTATGGTTACATCAGGTTTC 58.877 37.037 0.00 0.00 38.53 2.78
4194 5845 8.877864 ATTTCTTATGGTTACATCAGGTTTCA 57.122 30.769 0.00 0.00 38.53 2.69
4195 5846 7.921786 TTCTTATGGTTACATCAGGTTTCAG 57.078 36.000 0.00 0.00 38.53 3.02
4196 5847 7.016153 TCTTATGGTTACATCAGGTTTCAGT 57.984 36.000 0.00 0.00 38.53 3.41
4197 5848 8.141298 TCTTATGGTTACATCAGGTTTCAGTA 57.859 34.615 0.00 0.00 38.53 2.74
4198 5849 8.598916 TCTTATGGTTACATCAGGTTTCAGTAA 58.401 33.333 0.00 0.00 38.53 2.24
4200 5851 7.865706 ATGGTTACATCAGGTTTCAGTAATC 57.134 36.000 0.00 0.00 29.20 1.75
4201 5852 7.016153 TGGTTACATCAGGTTTCAGTAATCT 57.984 36.000 0.00 0.00 29.54 2.40
4218 5871 8.130469 TCAGTAATCTTGTGCGTTCGTAATATA 58.870 33.333 0.00 0.00 0.00 0.86
4224 5877 6.976349 TCTTGTGCGTTCGTAATATAATCTGT 59.024 34.615 0.00 0.00 0.00 3.41
4229 5882 6.982141 TGCGTTCGTAATATAATCTGTTCCTT 59.018 34.615 0.00 0.00 0.00 3.36
4261 5916 4.782019 TTTCTTGGGTGATGCATGTTAC 57.218 40.909 2.46 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.687292 ATCACATGATGCAAATGATAGTTACT 57.313 30.769 17.10 0.00 32.68 2.24
34 35 8.562052 TGATCACATGATGCAAATGATAGTTAC 58.438 33.333 17.10 5.13 34.37 2.50
38 39 6.966021 TGTGATCACATGATGCAAATGATAG 58.034 36.000 24.56 8.31 36.21 2.08
132 133 7.608761 AGGGTAGCATAAATACTTCGTGAAAAA 59.391 33.333 0.00 0.00 0.00 1.94
136 137 5.361571 TGAGGGTAGCATAAATACTTCGTGA 59.638 40.000 0.00 0.00 0.00 4.35
137 138 5.597806 TGAGGGTAGCATAAATACTTCGTG 58.402 41.667 0.00 0.00 0.00 4.35
138 139 5.864418 TGAGGGTAGCATAAATACTTCGT 57.136 39.130 0.00 0.00 0.00 3.85
139 140 6.089551 CGAATGAGGGTAGCATAAATACTTCG 59.910 42.308 0.00 0.00 0.00 3.79
140 141 6.128526 GCGAATGAGGGTAGCATAAATACTTC 60.129 42.308 0.00 0.00 0.00 3.01
150 171 0.397957 TAGGGCGAATGAGGGTAGCA 60.398 55.000 0.00 0.00 0.00 3.49
152 173 0.318762 GCTAGGGCGAATGAGGGTAG 59.681 60.000 0.00 0.00 0.00 3.18
168 189 4.621269 GGTGGCCCTAGCTAGCTA 57.379 61.111 22.85 22.85 43.90 3.32
171 192 1.356124 ATCATGGTGGCCCTAGCTAG 58.644 55.000 14.20 14.20 39.73 3.42
173 194 0.475906 GAATCATGGTGGCCCTAGCT 59.524 55.000 0.00 0.00 39.73 3.32
174 195 0.538287 GGAATCATGGTGGCCCTAGC 60.538 60.000 0.00 0.00 38.76 3.42
217 241 3.703001 TGTCATCTCCAACTTCTTCCC 57.297 47.619 0.00 0.00 0.00 3.97
223 247 5.012046 TGAGTACACATGTCATCTCCAACTT 59.988 40.000 14.19 0.00 0.00 2.66
237 261 5.420725 TGCTTATCCAACTGAGTACACAT 57.579 39.130 0.00 0.00 0.00 3.21
240 264 5.046663 TCACATGCTTATCCAACTGAGTACA 60.047 40.000 0.00 0.00 0.00 2.90
241 265 5.419542 TCACATGCTTATCCAACTGAGTAC 58.580 41.667 0.00 0.00 0.00 2.73
242 266 5.675684 TCACATGCTTATCCAACTGAGTA 57.324 39.130 0.00 0.00 0.00 2.59
243 267 4.558226 TCACATGCTTATCCAACTGAGT 57.442 40.909 0.00 0.00 0.00 3.41
245 269 4.454678 GGATCACATGCTTATCCAACTGA 58.545 43.478 13.87 0.00 39.24 3.41
251 283 1.072331 ACCGGGATCACATGCTTATCC 59.928 52.381 6.32 11.39 38.79 2.59
268 300 2.030185 CCTCATAGTACAATCCCGACCG 60.030 54.545 0.00 0.00 0.00 4.79
281 313 3.769844 CCTAACTGACCACACCTCATAGT 59.230 47.826 0.00 0.00 0.00 2.12
284 316 2.621070 ACCTAACTGACCACACCTCAT 58.379 47.619 0.00 0.00 0.00 2.90
286 318 4.202284 TGTTTACCTAACTGACCACACCTC 60.202 45.833 0.00 0.00 37.64 3.85
287 319 3.712733 TGTTTACCTAACTGACCACACCT 59.287 43.478 0.00 0.00 37.64 4.00
288 320 4.075963 TGTTTACCTAACTGACCACACC 57.924 45.455 0.00 0.00 37.64 4.16
289 321 5.061179 ACATGTTTACCTAACTGACCACAC 58.939 41.667 0.00 0.00 37.64 3.82
290 322 5.298989 ACATGTTTACCTAACTGACCACA 57.701 39.130 0.00 0.00 37.64 4.17
291 323 6.628919 AAACATGTTTACCTAACTGACCAC 57.371 37.500 22.10 0.00 37.64 4.16
301 333 9.574516 AAGAGTCTGAAATAAACATGTTTACCT 57.425 29.630 28.62 19.73 37.80 3.08
302 334 9.827411 GAAGAGTCTGAAATAAACATGTTTACC 57.173 33.333 28.62 20.84 37.80 2.85
305 337 9.566432 AGAGAAGAGTCTGAAATAAACATGTTT 57.434 29.630 25.99 25.99 32.80 2.83
306 338 9.566432 AAGAGAAGAGTCTGAAATAAACATGTT 57.434 29.630 4.92 4.92 32.80 2.71
333 559 8.149647 TGTCCTTTTCTCAATGCACATTTAATT 58.850 29.630 0.00 0.00 0.00 1.40
374 600 4.453480 ACTGTCCTCCCTCAATCAAAAA 57.547 40.909 0.00 0.00 0.00 1.94
375 601 4.019321 CCTACTGTCCTCCCTCAATCAAAA 60.019 45.833 0.00 0.00 0.00 2.44
376 602 3.519510 CCTACTGTCCTCCCTCAATCAAA 59.480 47.826 0.00 0.00 0.00 2.69
377 603 3.107601 CCTACTGTCCTCCCTCAATCAA 58.892 50.000 0.00 0.00 0.00 2.57
378 604 2.314852 TCCTACTGTCCTCCCTCAATCA 59.685 50.000 0.00 0.00 0.00 2.57
379 605 3.033659 TCCTACTGTCCTCCCTCAATC 57.966 52.381 0.00 0.00 0.00 2.67
380 606 3.310954 ACATCCTACTGTCCTCCCTCAAT 60.311 47.826 0.00 0.00 0.00 2.57
381 607 2.044492 ACATCCTACTGTCCTCCCTCAA 59.956 50.000 0.00 0.00 0.00 3.02
382 608 1.646447 ACATCCTACTGTCCTCCCTCA 59.354 52.381 0.00 0.00 0.00 3.86
383 609 2.312390 GACATCCTACTGTCCTCCCTC 58.688 57.143 0.00 0.00 39.72 4.30
384 610 1.410365 CGACATCCTACTGTCCTCCCT 60.410 57.143 0.00 0.00 42.06 4.20
385 611 1.033574 CGACATCCTACTGTCCTCCC 58.966 60.000 0.00 0.00 42.06 4.30
386 612 1.033574 CCGACATCCTACTGTCCTCC 58.966 60.000 0.00 0.00 42.06 4.30
387 613 1.765230 ACCGACATCCTACTGTCCTC 58.235 55.000 0.00 0.00 42.06 3.71
388 614 3.596940 ATACCGACATCCTACTGTCCT 57.403 47.619 0.00 0.00 42.06 3.85
389 615 4.581824 TGTTATACCGACATCCTACTGTCC 59.418 45.833 0.00 0.00 42.06 4.02
390 616 5.762825 TGTTATACCGACATCCTACTGTC 57.237 43.478 0.00 0.00 41.73 3.51
391 617 6.726490 AATGTTATACCGACATCCTACTGT 57.274 37.500 0.00 0.00 36.76 3.55
392 618 7.518370 GCAAAATGTTATACCGACATCCTACTG 60.518 40.741 0.00 0.00 36.76 2.74
393 619 6.482308 GCAAAATGTTATACCGACATCCTACT 59.518 38.462 0.00 0.00 36.76 2.57
394 620 6.563381 CGCAAAATGTTATACCGACATCCTAC 60.563 42.308 0.00 0.00 36.76 3.18
395 621 5.464057 CGCAAAATGTTATACCGACATCCTA 59.536 40.000 0.00 0.00 36.76 2.94
396 622 4.272504 CGCAAAATGTTATACCGACATCCT 59.727 41.667 0.00 0.00 36.76 3.24
397 623 4.034742 ACGCAAAATGTTATACCGACATCC 59.965 41.667 0.00 0.00 36.76 3.51
398 624 4.961551 CACGCAAAATGTTATACCGACATC 59.038 41.667 0.00 0.00 36.76 3.06
399 625 4.393680 ACACGCAAAATGTTATACCGACAT 59.606 37.500 0.00 0.00 39.31 3.06
400 626 3.747010 ACACGCAAAATGTTATACCGACA 59.253 39.130 0.00 0.00 0.00 4.35
401 627 4.085884 CACACGCAAAATGTTATACCGAC 58.914 43.478 0.00 0.00 0.00 4.79
402 628 3.747010 ACACACGCAAAATGTTATACCGA 59.253 39.130 0.00 0.00 0.00 4.69
403 629 4.073169 ACACACGCAAAATGTTATACCG 57.927 40.909 0.00 0.00 0.00 4.02
404 630 4.408694 GGACACACGCAAAATGTTATACC 58.591 43.478 0.00 0.00 0.00 2.73
405 631 4.155280 AGGGACACACGCAAAATGTTATAC 59.845 41.667 0.00 0.00 0.00 1.47
427 653 5.241949 GTGGTATAGCCCTCGATATCCATAG 59.758 48.000 0.00 0.00 36.04 2.23
428 654 5.138276 GTGGTATAGCCCTCGATATCCATA 58.862 45.833 0.00 0.00 36.04 2.74
429 655 3.961408 GTGGTATAGCCCTCGATATCCAT 59.039 47.826 0.00 0.00 36.04 3.41
430 656 3.362706 GTGGTATAGCCCTCGATATCCA 58.637 50.000 0.00 0.00 36.04 3.41
431 657 2.358267 CGTGGTATAGCCCTCGATATCC 59.642 54.545 0.00 0.00 36.30 2.59
432 658 2.223525 GCGTGGTATAGCCCTCGATATC 60.224 54.545 12.80 0.00 36.30 1.63
433 659 1.749634 GCGTGGTATAGCCCTCGATAT 59.250 52.381 12.80 0.00 36.30 1.63
434 660 1.171308 GCGTGGTATAGCCCTCGATA 58.829 55.000 12.80 0.00 36.30 2.92
435 661 1.965219 GCGTGGTATAGCCCTCGAT 59.035 57.895 12.80 0.00 36.30 3.59
436 662 3.440151 GCGTGGTATAGCCCTCGA 58.560 61.111 12.80 0.00 36.30 4.04
445 671 2.438975 TCGACGGAGGCGTGGTAT 60.439 61.111 0.00 0.00 0.00 2.73
457 683 0.307146 GTATCCTCTTCCGGTCGACG 59.693 60.000 9.92 4.95 43.80 5.12
458 684 1.603326 GAGTATCCTCTTCCGGTCGAC 59.397 57.143 7.13 7.13 34.69 4.20
459 685 1.489649 AGAGTATCCTCTTCCGGTCGA 59.510 52.381 0.00 0.00 46.08 4.20
460 686 1.970092 AGAGTATCCTCTTCCGGTCG 58.030 55.000 0.00 0.00 46.08 4.79
461 687 3.148412 GGTAGAGTATCCTCTTCCGGTC 58.852 54.545 0.00 0.00 46.08 4.79
462 688 3.226682 GGTAGAGTATCCTCTTCCGGT 57.773 52.381 0.00 0.00 46.08 5.28
465 691 3.250521 CGAACGGTAGAGTATCCTCTTCC 59.749 52.174 1.31 1.31 46.08 3.46
466 692 3.250521 CCGAACGGTAGAGTATCCTCTTC 59.749 52.174 4.99 0.00 46.08 2.87
467 693 3.212685 CCGAACGGTAGAGTATCCTCTT 58.787 50.000 4.99 0.00 46.08 2.85
468 694 3.069564 GCCGAACGGTAGAGTATCCTCT 61.070 54.545 14.63 0.00 42.40 3.69
469 695 1.266446 GCCGAACGGTAGAGTATCCTC 59.734 57.143 14.63 0.00 36.38 3.71
470 696 1.316651 GCCGAACGGTAGAGTATCCT 58.683 55.000 14.63 0.00 37.65 3.24
471 697 1.027357 TGCCGAACGGTAGAGTATCC 58.973 55.000 14.63 0.00 37.65 2.59
489 715 4.077184 TGGTAGAACGGCGGGCTG 62.077 66.667 13.24 0.00 0.00 4.85
490 716 4.078516 GTGGTAGAACGGCGGGCT 62.079 66.667 13.24 10.57 0.00 5.19
491 717 4.078516 AGTGGTAGAACGGCGGGC 62.079 66.667 13.24 1.83 0.00 6.13
492 718 2.125673 CAGTGGTAGAACGGCGGG 60.126 66.667 13.24 0.00 0.00 6.13
493 719 2.125673 CCAGTGGTAGAACGGCGG 60.126 66.667 13.24 0.00 0.00 6.13
494 720 2.813908 GCCAGTGGTAGAACGGCG 60.814 66.667 11.74 4.80 32.76 6.46
495 721 1.078426 ATGCCAGTGGTAGAACGGC 60.078 57.895 11.74 0.00 39.00 5.68
496 722 0.036388 ACATGCCAGTGGTAGAACGG 60.036 55.000 11.74 0.00 0.00 4.44
497 723 1.078709 CACATGCCAGTGGTAGAACG 58.921 55.000 11.74 0.00 35.88 3.95
505 731 1.466025 AACAAGCCCACATGCCAGTG 61.466 55.000 0.00 0.00 39.21 3.66
506 732 1.152483 AACAAGCCCACATGCCAGT 60.152 52.632 0.00 0.00 0.00 4.00
507 733 1.290955 CAACAAGCCCACATGCCAG 59.709 57.895 0.00 0.00 0.00 4.85
508 734 2.208619 CCAACAAGCCCACATGCCA 61.209 57.895 0.00 0.00 0.00 4.92
509 735 2.658422 CCAACAAGCCCACATGCC 59.342 61.111 0.00 0.00 0.00 4.40
510 736 1.470996 TTCCCAACAAGCCCACATGC 61.471 55.000 0.00 0.00 0.00 4.06
511 737 0.318120 GTTCCCAACAAGCCCACATG 59.682 55.000 0.00 0.00 0.00 3.21
512 738 0.831711 GGTTCCCAACAAGCCCACAT 60.832 55.000 0.00 0.00 0.00 3.21
513 739 1.456705 GGTTCCCAACAAGCCCACA 60.457 57.895 0.00 0.00 0.00 4.17
514 740 1.152546 AGGTTCCCAACAAGCCCAC 60.153 57.895 0.00 0.00 0.00 4.61
515 741 1.152567 CAGGTTCCCAACAAGCCCA 60.153 57.895 0.00 0.00 0.00 5.36
516 742 1.908299 CCAGGTTCCCAACAAGCCC 60.908 63.158 0.00 0.00 0.00 5.19
517 743 2.574018 GCCAGGTTCCCAACAAGCC 61.574 63.158 0.00 0.00 0.00 4.35
518 744 2.574018 GGCCAGGTTCCCAACAAGC 61.574 63.158 0.00 0.00 0.00 4.01
519 745 1.908299 GGGCCAGGTTCCCAACAAG 60.908 63.158 4.39 0.00 43.37 3.16
520 746 2.200092 GGGCCAGGTTCCCAACAA 59.800 61.111 4.39 0.00 43.37 2.83
525 751 2.362889 CATGTGGGCCAGGTTCCC 60.363 66.667 6.40 0.00 44.17 3.97
526 752 1.678970 GACATGTGGGCCAGGTTCC 60.679 63.158 6.40 0.00 38.40 3.62
527 753 0.962356 CTGACATGTGGGCCAGGTTC 60.962 60.000 6.40 1.46 38.40 3.62
528 754 1.075482 CTGACATGTGGGCCAGGTT 59.925 57.895 6.40 0.00 38.40 3.50
529 755 2.759114 CTGACATGTGGGCCAGGT 59.241 61.111 6.40 5.66 41.63 4.00
530 756 2.753043 GCTGACATGTGGGCCAGG 60.753 66.667 6.40 1.59 0.00 4.45
531 757 3.129502 CGCTGACATGTGGGCCAG 61.130 66.667 6.40 5.40 0.00 4.85
532 758 4.720902 CCGCTGACATGTGGGCCA 62.721 66.667 1.15 0.00 34.20 5.36
536 762 4.720902 TGGGCCGCTGACATGTGG 62.721 66.667 1.15 0.00 40.36 4.17
537 763 2.672651 TTGGGCCGCTGACATGTG 60.673 61.111 1.15 0.00 0.00 3.21
538 764 2.672996 GTTGGGCCGCTGACATGT 60.673 61.111 0.00 0.00 0.00 3.21
539 765 3.803082 CGTTGGGCCGCTGACATG 61.803 66.667 0.00 0.00 0.00 3.21
540 766 4.329545 ACGTTGGGCCGCTGACAT 62.330 61.111 0.00 0.00 0.00 3.06
541 767 4.980805 GACGTTGGGCCGCTGACA 62.981 66.667 0.00 0.00 0.00 3.58
542 768 4.980805 TGACGTTGGGCCGCTGAC 62.981 66.667 0.00 0.00 0.00 3.51
543 769 4.980805 GTGACGTTGGGCCGCTGA 62.981 66.667 0.00 0.00 0.00 4.26
546 772 4.382320 TAGGTGACGTTGGGCCGC 62.382 66.667 0.00 0.00 0.00 6.53
547 773 2.125673 CTAGGTGACGTTGGGCCG 60.126 66.667 0.00 0.00 0.00 6.13
548 774 2.436115 GCTAGGTGACGTTGGGCC 60.436 66.667 0.00 0.00 0.00 5.80
549 775 2.813908 CGCTAGGTGACGTTGGGC 60.814 66.667 0.00 0.00 0.00 5.36
550 776 2.813908 GCGCTAGGTGACGTTGGG 60.814 66.667 0.00 0.08 0.00 4.12
551 777 2.048597 TGCGCTAGGTGACGTTGG 60.049 61.111 9.73 0.00 0.00 3.77
552 778 2.094659 CCTGCGCTAGGTGACGTTG 61.095 63.158 9.73 0.00 42.00 4.10
553 779 2.261671 CCTGCGCTAGGTGACGTT 59.738 61.111 9.73 0.00 42.00 3.99
554 780 3.760035 CCCTGCGCTAGGTGACGT 61.760 66.667 19.93 0.00 45.80 4.34
556 782 4.082523 TGCCCTGCGCTAGGTGAC 62.083 66.667 19.93 12.00 45.80 3.67
557 783 3.774528 CTGCCCTGCGCTAGGTGA 61.775 66.667 19.93 8.69 45.80 4.02
558 784 3.729965 CTCTGCCCTGCGCTAGGTG 62.730 68.421 19.93 14.00 45.80 4.00
559 785 3.465403 CTCTGCCCTGCGCTAGGT 61.465 66.667 19.93 0.00 45.80 3.08
560 786 4.232878 CCTCTGCCCTGCGCTAGG 62.233 72.222 9.73 13.82 46.88 3.02
561 787 3.149338 CTCCTCTGCCCTGCGCTAG 62.149 68.421 9.73 4.25 38.78 3.42
562 788 3.150335 CTCCTCTGCCCTGCGCTA 61.150 66.667 9.73 0.00 38.78 4.26
571 797 4.459089 GGGACACGGCTCCTCTGC 62.459 72.222 1.08 0.00 0.00 4.26
572 798 3.775654 GGGGACACGGCTCCTCTG 61.776 72.222 1.08 0.00 0.00 3.35
581 807 4.712425 GTGGTCGACGGGGACACG 62.712 72.222 9.92 0.00 38.70 4.49
582 808 4.712425 CGTGGTCGACGGGGACAC 62.712 72.222 9.92 10.38 44.85 3.67
606 832 1.081175 CACGACGAGCAGAGCAGAA 60.081 57.895 0.00 0.00 0.00 3.02
824 1405 0.179026 GGGATTACGGGGAAAGCTCC 60.179 60.000 0.00 0.00 41.59 4.70
838 1419 1.087417 GGATGGGATGGGATGGGATT 58.913 55.000 0.00 0.00 0.00 3.01
846 1427 3.889692 CGTGGGGGATGGGATGGG 61.890 72.222 0.00 0.00 0.00 4.00
900 1483 5.012944 CTCCGTGGAGAGAGAGAGGTACT 62.013 56.522 10.50 0.00 44.53 2.73
901 1484 1.209990 TCCGTGGAGAGAGAGAGGTAC 59.790 57.143 0.00 0.00 0.00 3.34
1264 1881 5.585844 TCGAATCGAATGTGGTACAGTACTA 59.414 40.000 1.57 1.23 32.42 1.82
1265 1882 4.397103 TCGAATCGAATGTGGTACAGTACT 59.603 41.667 1.57 0.00 32.42 2.73
1305 1956 2.693762 GCGGAATCAGCAGCAGCAA 61.694 57.895 3.17 0.00 45.49 3.91
1526 2213 1.004918 CTCGGCGTGTTCCTTCCTT 60.005 57.895 6.85 0.00 0.00 3.36
1612 2309 8.800370 AATTAAGGTGCCAAGAAAAAGAAAAA 57.200 26.923 0.00 0.00 0.00 1.94
1613 2310 9.892130 TTAATTAAGGTGCCAAGAAAAAGAAAA 57.108 25.926 0.00 0.00 0.00 2.29
1614 2311 9.320352 GTTAATTAAGGTGCCAAGAAAAAGAAA 57.680 29.630 0.00 0.00 0.00 2.52
1640 2338 4.589216 TGCTCTGTTTTCCTTCCATTTG 57.411 40.909 0.00 0.00 0.00 2.32
1654 2352 4.832248 TCGGAGTGATAATTTTGCTCTGT 58.168 39.130 0.00 0.00 34.97 3.41
1720 2429 0.604578 TTTTGCCCAGATTGCAGAGC 59.395 50.000 0.00 0.00 40.35 4.09
1749 2473 1.913419 GAAGTGGGAATAGTGGTGGGA 59.087 52.381 0.00 0.00 0.00 4.37
1750 2474 1.633432 TGAAGTGGGAATAGTGGTGGG 59.367 52.381 0.00 0.00 0.00 4.61
1751 2475 3.433306 TTGAAGTGGGAATAGTGGTGG 57.567 47.619 0.00 0.00 0.00 4.61
1752 2476 6.180472 ACTAATTGAAGTGGGAATAGTGGTG 58.820 40.000 0.00 0.00 0.00 4.17
1753 2477 6.388619 ACTAATTGAAGTGGGAATAGTGGT 57.611 37.500 0.00 0.00 0.00 4.16
1754 2478 8.980481 ATTACTAATTGAAGTGGGAATAGTGG 57.020 34.615 0.00 0.00 0.00 4.00
1853 3216 9.109393 GGAGTACAGAGCATTGAATGTATAAAA 57.891 33.333 7.05 0.00 31.35 1.52
1854 3217 7.438160 CGGAGTACAGAGCATTGAATGTATAAA 59.562 37.037 7.05 0.00 31.35 1.40
1855 3218 6.923508 CGGAGTACAGAGCATTGAATGTATAA 59.076 38.462 7.05 0.00 31.35 0.98
1856 3219 6.447162 CGGAGTACAGAGCATTGAATGTATA 58.553 40.000 7.05 0.00 31.35 1.47
1857 3220 5.292765 CGGAGTACAGAGCATTGAATGTAT 58.707 41.667 7.05 0.00 31.35 2.29
1858 3221 4.682787 CGGAGTACAGAGCATTGAATGTA 58.317 43.478 7.05 0.00 0.00 2.29
1859 3222 3.525537 CGGAGTACAGAGCATTGAATGT 58.474 45.455 7.05 0.00 0.00 2.71
1860 3223 2.286294 GCGGAGTACAGAGCATTGAATG 59.714 50.000 0.00 0.00 0.00 2.67
1861 3224 2.093500 TGCGGAGTACAGAGCATTGAAT 60.093 45.455 5.28 0.00 34.39 2.57
1862 3225 1.275010 TGCGGAGTACAGAGCATTGAA 59.725 47.619 5.28 0.00 34.39 2.69
1863 3226 0.894835 TGCGGAGTACAGAGCATTGA 59.105 50.000 5.28 0.00 34.39 2.57
1864 3227 1.725641 TTGCGGAGTACAGAGCATTG 58.274 50.000 9.38 0.00 39.50 2.82
1865 3228 2.169352 AGATTGCGGAGTACAGAGCATT 59.831 45.455 9.38 6.74 39.50 3.56
1866 3229 1.759445 AGATTGCGGAGTACAGAGCAT 59.241 47.619 9.38 2.10 39.50 3.79
1867 3230 1.186200 AGATTGCGGAGTACAGAGCA 58.814 50.000 5.28 5.28 37.89 4.26
1868 3231 1.929836 CAAGATTGCGGAGTACAGAGC 59.070 52.381 0.00 0.00 0.00 4.09
1869 3232 2.544685 CCAAGATTGCGGAGTACAGAG 58.455 52.381 0.00 0.00 0.00 3.35
1870 3233 1.405526 GCCAAGATTGCGGAGTACAGA 60.406 52.381 0.00 0.00 0.00 3.41
1871 3234 1.009829 GCCAAGATTGCGGAGTACAG 58.990 55.000 0.00 0.00 0.00 2.74
1872 3235 0.323302 TGCCAAGATTGCGGAGTACA 59.677 50.000 0.00 0.00 0.00 2.90
1873 3236 1.448985 TTGCCAAGATTGCGGAGTAC 58.551 50.000 0.00 0.00 0.00 2.73
1874 3237 2.192664 TTTGCCAAGATTGCGGAGTA 57.807 45.000 0.00 0.00 0.00 2.59
1875 3238 1.327303 TTTTGCCAAGATTGCGGAGT 58.673 45.000 0.00 0.00 0.00 3.85
1876 3239 2.437200 TTTTTGCCAAGATTGCGGAG 57.563 45.000 0.00 0.00 0.00 4.63
1877 3240 3.065655 CAATTTTTGCCAAGATTGCGGA 58.934 40.909 1.51 0.00 30.17 5.54
1878 3241 2.160022 CCAATTTTTGCCAAGATTGCGG 59.840 45.455 7.95 0.00 34.52 5.69
1879 3242 2.807392 ACCAATTTTTGCCAAGATTGCG 59.193 40.909 7.95 5.09 34.52 4.85
1880 3243 4.538917 CAACCAATTTTTGCCAAGATTGC 58.461 39.130 7.95 0.00 34.52 3.56
1881 3244 4.538917 GCAACCAATTTTTGCCAAGATTG 58.461 39.130 9.53 6.77 43.02 2.67
1882 3245 4.834357 GCAACCAATTTTTGCCAAGATT 57.166 36.364 9.53 0.00 43.02 2.40
1899 3262 1.685355 GGCATTATGGTGGGGGCAAC 61.685 60.000 0.00 0.00 0.00 4.17
1900 3263 1.382420 GGCATTATGGTGGGGGCAA 60.382 57.895 0.00 0.00 0.00 4.52
1901 3264 2.281767 GGCATTATGGTGGGGGCA 59.718 61.111 0.00 0.00 0.00 5.36
1902 3265 2.524148 GGGCATTATGGTGGGGGC 60.524 66.667 0.00 0.00 0.00 5.80
1903 3266 1.457455 GTGGGCATTATGGTGGGGG 60.457 63.158 0.00 0.00 0.00 5.40
1904 3267 0.032217 AAGTGGGCATTATGGTGGGG 60.032 55.000 0.00 0.00 0.00 4.96
1905 3268 1.341877 TGAAGTGGGCATTATGGTGGG 60.342 52.381 0.00 0.00 0.00 4.61
1906 3269 2.026641 CTGAAGTGGGCATTATGGTGG 58.973 52.381 0.00 0.00 0.00 4.61
1907 3270 2.726821 ACTGAAGTGGGCATTATGGTG 58.273 47.619 0.00 0.00 0.00 4.17
1908 3271 3.456380 AACTGAAGTGGGCATTATGGT 57.544 42.857 0.00 0.00 0.00 3.55
1909 3272 6.469782 AATTAACTGAAGTGGGCATTATGG 57.530 37.500 0.00 0.00 0.00 2.74
1910 3273 8.776376 AAAAATTAACTGAAGTGGGCATTATG 57.224 30.769 0.00 0.00 0.00 1.90
1952 3315 9.732130 AGAAGATCTAGCACATTTCTAAAAACT 57.268 29.630 0.00 0.00 0.00 2.66
1984 3347 8.295288 CACAGAGATCTAGCACATTTTCTTTTT 58.705 33.333 0.00 0.00 0.00 1.94
1985 3348 7.446625 ACACAGAGATCTAGCACATTTTCTTTT 59.553 33.333 0.00 0.00 0.00 2.27
1986 3349 6.939163 ACACAGAGATCTAGCACATTTTCTTT 59.061 34.615 0.00 0.00 0.00 2.52
1987 3350 6.471146 ACACAGAGATCTAGCACATTTTCTT 58.529 36.000 0.00 0.00 0.00 2.52
1988 3351 6.047511 ACACAGAGATCTAGCACATTTTCT 57.952 37.500 0.00 0.00 0.00 2.52
1989 3352 7.261325 TCTACACAGAGATCTAGCACATTTTC 58.739 38.462 0.00 0.00 0.00 2.29
1990 3353 7.175347 TCTACACAGAGATCTAGCACATTTT 57.825 36.000 0.00 0.00 0.00 1.82
1991 3354 6.782082 TCTACACAGAGATCTAGCACATTT 57.218 37.500 0.00 0.00 0.00 2.32
1992 3355 6.975196 ATCTACACAGAGATCTAGCACATT 57.025 37.500 0.00 0.00 33.22 2.71
1993 3356 8.470657 TTTATCTACACAGAGATCTAGCACAT 57.529 34.615 0.00 0.00 37.38 3.21
1994 3357 7.775561 TCTTTATCTACACAGAGATCTAGCACA 59.224 37.037 0.00 0.00 37.38 4.57
1995 3358 8.160521 TCTTTATCTACACAGAGATCTAGCAC 57.839 38.462 0.00 0.00 37.38 4.40
1996 3359 8.753497 TTCTTTATCTACACAGAGATCTAGCA 57.247 34.615 0.00 0.00 37.38 3.49
2000 3363 9.814899 CACATTTCTTTATCTACACAGAGATCT 57.185 33.333 0.00 0.00 37.38 2.75
2001 3364 8.547069 GCACATTTCTTTATCTACACAGAGATC 58.453 37.037 0.00 0.00 37.38 2.75
2002 3365 8.263640 AGCACATTTCTTTATCTACACAGAGAT 58.736 33.333 0.00 0.00 39.54 2.75
2003 3366 7.615403 AGCACATTTCTTTATCTACACAGAGA 58.385 34.615 0.00 0.00 33.22 3.10
2004 3367 7.840342 AGCACATTTCTTTATCTACACAGAG 57.160 36.000 0.00 0.00 33.22 3.35
2005 3368 7.361201 GCAAGCACATTTCTTTATCTACACAGA 60.361 37.037 0.00 0.00 34.56 3.41
2367 3926 4.624364 CTCGTGCACTGTGGGGCA 62.624 66.667 16.19 0.00 37.77 5.36
2421 3980 1.713297 AGAAGTTGTCCGTGTACCCT 58.287 50.000 0.00 0.00 0.00 4.34
3243 4822 1.002011 GAAGGGCTGGAACCTGGTC 60.002 63.158 0.00 0.00 38.63 4.02
3318 4907 2.744202 GGCTGTGATGTGAGTTTACCTG 59.256 50.000 0.00 0.00 0.00 4.00
3346 4935 2.752354 TGTGCTTGCTTGTTGTACAGTT 59.248 40.909 0.00 0.00 0.00 3.16
3363 4952 2.294233 TCTGCATTTCTCCTTGTTGTGC 59.706 45.455 0.00 0.00 0.00 4.57
3425 5025 4.641989 AGATTCAAATCATCACCCTTTCCG 59.358 41.667 5.59 0.00 37.89 4.30
3470 5070 7.663493 TCAACATGACAGAAACAACCATATACA 59.337 33.333 0.00 0.00 0.00 2.29
3474 5074 5.473162 CCTCAACATGACAGAAACAACCATA 59.527 40.000 0.00 0.00 0.00 2.74
3539 5149 5.626142 TCCATTTACAGTAGCAAGGACAAA 58.374 37.500 0.00 0.00 0.00 2.83
3650 5262 1.463444 GACTACGCACATCCCAAACAC 59.537 52.381 0.00 0.00 0.00 3.32
3689 5301 0.314302 ACTTCTCCACCTTCGACACG 59.686 55.000 0.00 0.00 0.00 4.49
3748 5363 1.470098 AGCGTGCAGATTTCACCAATC 59.530 47.619 0.00 0.00 41.73 2.67
3766 5381 0.109597 CATTCGCACTTGGTTCCAGC 60.110 55.000 0.00 0.00 0.00 4.85
3777 5392 0.247814 CATTCTCGCCACATTCGCAC 60.248 55.000 0.00 0.00 0.00 5.34
3797 5412 2.161855 CAGGCTAACAGCAACCATCAA 58.838 47.619 0.00 0.00 44.75 2.57
3810 5426 2.265739 CGCAGCAGTCCAGGCTAA 59.734 61.111 0.00 0.00 40.23 3.09
3826 5442 4.881850 ACCATAGAGGATAAACAAAAGGCG 59.118 41.667 0.00 0.00 41.22 5.52
3862 5478 5.048921 TCGATACTGAGATAAGGTTAAGCCG 60.049 44.000 0.00 0.00 43.70 5.52
3878 5512 5.034554 ACAGCAACAATTGTTCGATACTG 57.965 39.130 20.85 21.20 35.83 2.74
3879 5513 5.008613 ACAACAGCAACAATTGTTCGATACT 59.991 36.000 20.85 10.41 35.46 2.12
3880 5514 5.212194 ACAACAGCAACAATTGTTCGATAC 58.788 37.500 20.85 8.45 35.46 2.24
3881 5515 5.431420 ACAACAGCAACAATTGTTCGATA 57.569 34.783 20.85 0.00 35.46 2.92
3882 5516 4.305989 ACAACAGCAACAATTGTTCGAT 57.694 36.364 20.85 12.33 35.46 3.59
3883 5517 3.773860 ACAACAGCAACAATTGTTCGA 57.226 38.095 20.85 0.00 35.46 3.71
3886 5520 5.237048 AGTTGAACAACAGCAACAATTGTT 58.763 33.333 18.13 18.13 46.48 2.83
3887 5521 4.819769 AGTTGAACAACAGCAACAATTGT 58.180 34.783 17.85 4.92 45.08 2.71
3888 5522 5.783100 AAGTTGAACAACAGCAACAATTG 57.217 34.783 17.85 3.24 45.08 2.32
3889 5523 5.700373 ACAAAGTTGAACAACAGCAACAATT 59.300 32.000 17.85 0.00 45.08 2.32
3890 5524 5.120519 CACAAAGTTGAACAACAGCAACAAT 59.879 36.000 17.85 0.00 45.08 2.71
3891 5525 4.447054 CACAAAGTTGAACAACAGCAACAA 59.553 37.500 17.85 0.00 45.08 2.83
3892 5526 3.986572 CACAAAGTTGAACAACAGCAACA 59.013 39.130 17.85 0.00 45.08 3.33
3893 5527 3.367630 CCACAAAGTTGAACAACAGCAAC 59.632 43.478 17.85 0.00 43.47 4.17
3894 5528 3.583806 CCACAAAGTTGAACAACAGCAA 58.416 40.909 17.85 0.00 43.47 3.91
3895 5529 2.673610 GCCACAAAGTTGAACAACAGCA 60.674 45.455 17.85 0.00 43.47 4.41
3896 5530 1.926510 GCCACAAAGTTGAACAACAGC 59.073 47.619 17.85 8.17 43.47 4.40
3897 5531 3.181397 CAGCCACAAAGTTGAACAACAG 58.819 45.455 17.85 10.52 43.47 3.16
3937 5582 1.270465 ACAAGCCATCAAGCCTTTTGC 60.270 47.619 0.00 0.00 41.71 3.68
4007 5653 7.201875 GGTCACTTTTCTCATCCCTTTTAACAA 60.202 37.037 0.00 0.00 0.00 2.83
4039 5690 7.445402 CAGATCTTTCCAGTTTTCCTAGTGAAA 59.555 37.037 0.00 3.19 41.18 2.69
4042 5693 6.234177 ACAGATCTTTCCAGTTTTCCTAGTG 58.766 40.000 0.00 0.00 0.00 2.74
4043 5694 6.441088 ACAGATCTTTCCAGTTTTCCTAGT 57.559 37.500 0.00 0.00 0.00 2.57
4044 5695 7.713073 GGATACAGATCTTTCCAGTTTTCCTAG 59.287 40.741 10.07 0.00 32.15 3.02
4046 5697 6.012508 TGGATACAGATCTTTCCAGTTTTCCT 60.013 38.462 12.67 0.00 46.17 3.36
4047 5698 6.180472 TGGATACAGATCTTTCCAGTTTTCC 58.820 40.000 12.67 8.78 46.17 3.13
4065 5716 9.069082 ACACTAGATATAGACAACACTGGATAC 57.931 37.037 0.33 0.00 0.00 2.24
4067 5718 8.417106 CAACACTAGATATAGACAACACTGGAT 58.583 37.037 0.33 0.00 0.00 3.41
4069 5720 7.548097 ACAACACTAGATATAGACAACACTGG 58.452 38.462 0.33 0.00 0.00 4.00
4071 5722 8.582657 AGACAACACTAGATATAGACAACACT 57.417 34.615 0.33 0.00 0.00 3.55
4111 5762 9.211485 AGAAAGGTGCAATTTCATCAAATTTAG 57.789 29.630 21.39 0.00 39.75 1.85
4114 5765 7.218614 TCAGAAAGGTGCAATTTCATCAAATT 58.781 30.769 21.39 3.19 42.03 1.82
4115 5766 6.761312 TCAGAAAGGTGCAATTTCATCAAAT 58.239 32.000 21.39 3.74 38.79 2.32
4131 5782 6.182039 TGCGAAATTGTAGATTCAGAAAGG 57.818 37.500 0.00 0.00 0.00 3.11
4136 5787 7.429340 GTGGTTAATGCGAAATTGTAGATTCAG 59.571 37.037 0.00 0.00 0.00 3.02
4144 5795 4.388469 GCAATGTGGTTAATGCGAAATTGT 59.612 37.500 0.00 0.00 0.00 2.71
4154 5805 7.147915 ACCATAAGAAATCGCAATGTGGTTAAT 60.148 33.333 0.00 0.00 33.97 1.40
4160 5811 6.550843 TGTAACCATAAGAAATCGCAATGTG 58.449 36.000 0.00 0.00 0.00 3.21
4162 5813 7.416817 TGATGTAACCATAAGAAATCGCAATG 58.583 34.615 0.00 0.00 0.00 2.82
4173 5824 8.786826 TTACTGAAACCTGATGTAACCATAAG 57.213 34.615 0.00 0.00 30.16 1.73
4179 5830 8.230486 CACAAGATTACTGAAACCTGATGTAAC 58.770 37.037 0.00 0.00 0.00 2.50
4191 5842 3.386486 ACGAACGCACAAGATTACTGAA 58.614 40.909 0.00 0.00 0.00 3.02
4192 5843 3.021269 ACGAACGCACAAGATTACTGA 57.979 42.857 0.00 0.00 0.00 3.41
4193 5844 4.896562 TTACGAACGCACAAGATTACTG 57.103 40.909 0.00 0.00 0.00 2.74
4194 5845 8.861033 TTATATTACGAACGCACAAGATTACT 57.139 30.769 0.00 0.00 0.00 2.24
4195 5846 9.723299 GATTATATTACGAACGCACAAGATTAC 57.277 33.333 0.00 0.00 0.00 1.89
4196 5847 9.687210 AGATTATATTACGAACGCACAAGATTA 57.313 29.630 0.00 0.00 0.00 1.75
4197 5848 8.487970 CAGATTATATTACGAACGCACAAGATT 58.512 33.333 0.00 0.00 0.00 2.40
4198 5849 7.652105 ACAGATTATATTACGAACGCACAAGAT 59.348 33.333 0.00 0.00 0.00 2.40
4200 5851 7.161829 ACAGATTATATTACGAACGCACAAG 57.838 36.000 0.00 0.00 0.00 3.16
4201 5852 7.254185 GGAACAGATTATATTACGAACGCACAA 60.254 37.037 0.00 0.00 0.00 3.33
4224 5877 8.802267 CACCCAAGAAAAATACATAGAAAGGAA 58.198 33.333 0.00 0.00 0.00 3.36
4229 5882 7.395772 TGCATCACCCAAGAAAAATACATAGAA 59.604 33.333 0.00 0.00 0.00 2.10
4243 5896 3.313526 GCTAGTAACATGCATCACCCAAG 59.686 47.826 0.00 0.00 0.00 3.61
4244 5897 3.278574 GCTAGTAACATGCATCACCCAA 58.721 45.455 0.00 0.00 0.00 4.12
4245 5898 2.238395 TGCTAGTAACATGCATCACCCA 59.762 45.455 0.00 0.00 0.00 4.51
4246 5899 2.874701 CTGCTAGTAACATGCATCACCC 59.125 50.000 0.00 0.00 36.07 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.