Multiple sequence alignment - TraesCS3D01G028600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G028600 chr3D 100.000 3065 0 0 1 3065 10221631 10218567 0.000000e+00 5661
1 TraesCS3D01G028600 chr3B 94.656 1684 86 3 809 2488 27035467 27037150 0.000000e+00 2608
2 TraesCS3D01G028600 chr3B 94.286 1680 76 1 809 2488 14346745 14345086 0.000000e+00 2553
3 TraesCS3D01G028600 chr3B 97.409 579 15 0 2487 3065 14345048 14344470 0.000000e+00 987
4 TraesCS3D01G028600 chr3B 92.857 602 18 5 2482 3058 27037181 27037782 0.000000e+00 850
5 TraesCS3D01G028600 chr3A 95.229 1530 66 4 841 2367 16889148 16890673 0.000000e+00 2414
6 TraesCS3D01G028600 chr3A 83.902 615 53 13 2482 3050 16890900 16891514 2.080000e-151 545
7 TraesCS3D01G028600 chr3A 91.150 113 9 1 2377 2488 16890757 16890869 5.290000e-33 152
8 TraesCS3D01G028600 chr5B 94.625 707 33 5 2 707 448102274 448102976 0.000000e+00 1090
9 TraesCS3D01G028600 chr2D 94.468 705 37 2 2 706 398509552 398508850 0.000000e+00 1085
10 TraesCS3D01G028600 chr6D 94.193 706 39 2 2 706 58443510 58444214 0.000000e+00 1075
11 TraesCS3D01G028600 chr7B 93.918 707 37 6 2 706 379730130 379729428 0.000000e+00 1062
12 TraesCS3D01G028600 chr1D 94.043 705 33 4 2 706 387955673 387956368 0.000000e+00 1061
13 TraesCS3D01G028600 chr1D 78.798 915 181 11 1175 2084 459818515 459817609 1.220000e-168 603
14 TraesCS3D01G028600 chr7D 93.901 705 38 5 4 706 97944435 97945136 0.000000e+00 1059
15 TraesCS3D01G028600 chr5D 93.777 707 39 4 2 706 174314633 174315336 0.000000e+00 1057
16 TraesCS3D01G028600 chr4D 93.671 711 38 6 2 710 145939643 145940348 0.000000e+00 1057
17 TraesCS3D01G028600 chr4D 93.768 706 41 2 2 706 463349409 463348706 0.000000e+00 1057
18 TraesCS3D01G028600 chr1B 78.878 909 173 14 1181 2084 637388626 637387732 5.660000e-167 597
19 TraesCS3D01G028600 chr1B 79.854 824 159 7 1288 2108 637478368 637477549 2.030000e-166 595


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G028600 chr3D 10218567 10221631 3064 True 5661 5661 100.000000 1 3065 1 chr3D.!!$R1 3064
1 TraesCS3D01G028600 chr3B 14344470 14346745 2275 True 1770 2553 95.847500 809 3065 2 chr3B.!!$R1 2256
2 TraesCS3D01G028600 chr3B 27035467 27037782 2315 False 1729 2608 93.756500 809 3058 2 chr3B.!!$F1 2249
3 TraesCS3D01G028600 chr3A 16889148 16891514 2366 False 1037 2414 90.093667 841 3050 3 chr3A.!!$F1 2209
4 TraesCS3D01G028600 chr5B 448102274 448102976 702 False 1090 1090 94.625000 2 707 1 chr5B.!!$F1 705
5 TraesCS3D01G028600 chr2D 398508850 398509552 702 True 1085 1085 94.468000 2 706 1 chr2D.!!$R1 704
6 TraesCS3D01G028600 chr6D 58443510 58444214 704 False 1075 1075 94.193000 2 706 1 chr6D.!!$F1 704
7 TraesCS3D01G028600 chr7B 379729428 379730130 702 True 1062 1062 93.918000 2 706 1 chr7B.!!$R1 704
8 TraesCS3D01G028600 chr1D 387955673 387956368 695 False 1061 1061 94.043000 2 706 1 chr1D.!!$F1 704
9 TraesCS3D01G028600 chr1D 459817609 459818515 906 True 603 603 78.798000 1175 2084 1 chr1D.!!$R1 909
10 TraesCS3D01G028600 chr7D 97944435 97945136 701 False 1059 1059 93.901000 4 706 1 chr7D.!!$F1 702
11 TraesCS3D01G028600 chr5D 174314633 174315336 703 False 1057 1057 93.777000 2 706 1 chr5D.!!$F1 704
12 TraesCS3D01G028600 chr4D 145939643 145940348 705 False 1057 1057 93.671000 2 710 1 chr4D.!!$F1 708
13 TraesCS3D01G028600 chr4D 463348706 463349409 703 True 1057 1057 93.768000 2 706 1 chr4D.!!$R1 704
14 TraesCS3D01G028600 chr1B 637387732 637388626 894 True 597 597 78.878000 1181 2084 1 chr1B.!!$R1 903
15 TraesCS3D01G028600 chr1B 637477549 637478368 819 True 595 595 79.854000 1288 2108 1 chr1B.!!$R2 820

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 666 0.324943 AAACCATGAGAGGTGGGACG 59.675 55.0 0.0 0.0 42.25 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2242 1.199624 CAGGCAAACAAAGACGTTGC 58.8 50.0 0.66 0.0 41.31 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.636231 CCGCACCAACTCCCAGGA 61.636 66.667 0.00 0.00 0.00 3.86
73 74 2.358737 CAACTCCCAGGACCACGC 60.359 66.667 0.00 0.00 0.00 5.34
75 76 4.640690 ACTCCCAGGACCACGCCT 62.641 66.667 0.00 0.00 39.37 5.52
169 170 3.441290 CTCGCCGTCCTCGTCCTT 61.441 66.667 0.00 0.00 35.01 3.36
179 180 3.569049 CTCGTCCTTCGGCACCGTT 62.569 63.158 9.23 0.00 40.74 4.44
192 193 2.738521 CCGTTGCGACCCAGTGAG 60.739 66.667 0.00 0.00 0.00 3.51
193 194 2.029073 CGTTGCGACCCAGTGAGT 59.971 61.111 0.00 0.00 0.00 3.41
194 195 1.287815 CGTTGCGACCCAGTGAGTA 59.712 57.895 0.00 0.00 0.00 2.59
321 322 6.362283 CGATGTATTGTTTCCTTTGTTTGGAC 59.638 38.462 0.00 0.00 32.65 4.02
366 367 8.674607 GTTAAGGTAAGGTTAATGTGATTGAGG 58.325 37.037 0.00 0.00 0.00 3.86
428 430 9.739276 AATGTGATTGAGTGATTTAAGGTAAGA 57.261 29.630 0.00 0.00 0.00 2.10
633 642 0.549413 AAAGGTGGGAGGAGGTACCC 60.549 60.000 8.74 0.00 45.74 3.69
656 666 0.324943 AAACCATGAGAGGTGGGACG 59.675 55.000 0.00 0.00 42.25 4.79
711 722 5.263968 TCCATTAGGAGTAGAGAAAAGCG 57.736 43.478 0.00 0.00 39.61 4.68
712 723 4.954202 TCCATTAGGAGTAGAGAAAAGCGA 59.046 41.667 0.00 0.00 39.61 4.93
713 724 5.421056 TCCATTAGGAGTAGAGAAAAGCGAA 59.579 40.000 0.00 0.00 39.61 4.70
714 725 6.070995 TCCATTAGGAGTAGAGAAAAGCGAAA 60.071 38.462 0.00 0.00 39.61 3.46
715 726 6.594159 CCATTAGGAGTAGAGAAAAGCGAAAA 59.406 38.462 0.00 0.00 36.89 2.29
716 727 7.413109 CCATTAGGAGTAGAGAAAAGCGAAAAC 60.413 40.741 0.00 0.00 36.89 2.43
717 728 4.957296 AGGAGTAGAGAAAAGCGAAAACA 58.043 39.130 0.00 0.00 0.00 2.83
718 729 5.552178 AGGAGTAGAGAAAAGCGAAAACAT 58.448 37.500 0.00 0.00 0.00 2.71
719 730 6.698380 AGGAGTAGAGAAAAGCGAAAACATA 58.302 36.000 0.00 0.00 0.00 2.29
720 731 7.331791 AGGAGTAGAGAAAAGCGAAAACATAT 58.668 34.615 0.00 0.00 0.00 1.78
721 732 8.475639 AGGAGTAGAGAAAAGCGAAAACATATA 58.524 33.333 0.00 0.00 0.00 0.86
722 733 9.262358 GGAGTAGAGAAAAGCGAAAACATATAT 57.738 33.333 0.00 0.00 0.00 0.86
725 736 9.159470 GTAGAGAAAAGCGAAAACATATATTGC 57.841 33.333 0.00 0.00 0.00 3.56
726 737 7.989826 AGAGAAAAGCGAAAACATATATTGCT 58.010 30.769 0.00 0.00 0.00 3.91
727 738 8.462016 AGAGAAAAGCGAAAACATATATTGCTT 58.538 29.630 0.00 0.00 42.46 3.91
728 739 8.398491 AGAAAAGCGAAAACATATATTGCTTG 57.602 30.769 0.58 0.00 40.69 4.01
729 740 8.028938 AGAAAAGCGAAAACATATATTGCTTGT 58.971 29.630 0.58 0.00 40.69 3.16
730 741 8.532977 AAAAGCGAAAACATATATTGCTTGTT 57.467 26.923 0.58 0.00 40.69 2.83
731 742 7.740519 AAGCGAAAACATATATTGCTTGTTC 57.259 32.000 0.00 0.00 39.50 3.18
732 743 7.088589 AGCGAAAACATATATTGCTTGTTCT 57.911 32.000 0.00 0.00 32.66 3.01
733 744 7.538575 AGCGAAAACATATATTGCTTGTTCTT 58.461 30.769 0.00 0.00 32.66 2.52
734 745 8.673711 AGCGAAAACATATATTGCTTGTTCTTA 58.326 29.630 0.00 0.00 32.66 2.10
735 746 8.947940 GCGAAAACATATATTGCTTGTTCTTAG 58.052 33.333 0.00 0.00 32.66 2.18
736 747 8.947940 CGAAAACATATATTGCTTGTTCTTAGC 58.052 33.333 0.00 0.00 39.10 3.09
737 748 9.787532 GAAAACATATATTGCTTGTTCTTAGCA 57.212 29.630 0.00 0.00 46.26 3.49
771 782 8.611654 TTACATAACTACCAGTGTTTCTTTCC 57.388 34.615 0.00 0.00 0.00 3.13
772 783 6.002082 ACATAACTACCAGTGTTTCTTTCCC 58.998 40.000 0.00 0.00 0.00 3.97
773 784 4.513406 AACTACCAGTGTTTCTTTCCCA 57.487 40.909 0.00 0.00 0.00 4.37
774 785 4.513406 ACTACCAGTGTTTCTTTCCCAA 57.487 40.909 0.00 0.00 0.00 4.12
775 786 5.061721 ACTACCAGTGTTTCTTTCCCAAT 57.938 39.130 0.00 0.00 0.00 3.16
776 787 6.195600 ACTACCAGTGTTTCTTTCCCAATA 57.804 37.500 0.00 0.00 0.00 1.90
777 788 6.790319 ACTACCAGTGTTTCTTTCCCAATAT 58.210 36.000 0.00 0.00 0.00 1.28
778 789 7.924541 ACTACCAGTGTTTCTTTCCCAATATA 58.075 34.615 0.00 0.00 0.00 0.86
779 790 8.387813 ACTACCAGTGTTTCTTTCCCAATATAA 58.612 33.333 0.00 0.00 0.00 0.98
780 791 7.703058 ACCAGTGTTTCTTTCCCAATATAAG 57.297 36.000 0.00 0.00 0.00 1.73
781 792 7.466804 ACCAGTGTTTCTTTCCCAATATAAGA 58.533 34.615 0.00 0.00 0.00 2.10
782 793 8.116026 ACCAGTGTTTCTTTCCCAATATAAGAT 58.884 33.333 0.00 0.00 0.00 2.40
783 794 8.408601 CCAGTGTTTCTTTCCCAATATAAGATG 58.591 37.037 0.00 0.00 0.00 2.90
784 795 8.408601 CAGTGTTTCTTTCCCAATATAAGATGG 58.591 37.037 0.00 0.00 36.42 3.51
785 796 8.116026 AGTGTTTCTTTCCCAATATAAGATGGT 58.884 33.333 0.00 0.00 34.79 3.55
786 797 8.406297 GTGTTTCTTTCCCAATATAAGATGGTC 58.594 37.037 0.00 0.00 34.79 4.02
787 798 8.112822 TGTTTCTTTCCCAATATAAGATGGTCA 58.887 33.333 0.00 0.00 34.79 4.02
788 799 8.966868 GTTTCTTTCCCAATATAAGATGGTCAA 58.033 33.333 0.00 0.00 34.79 3.18
789 800 8.519799 TTCTTTCCCAATATAAGATGGTCAAC 57.480 34.615 0.00 0.00 34.79 3.18
790 801 7.638444 TCTTTCCCAATATAAGATGGTCAACA 58.362 34.615 0.00 0.00 34.79 3.33
791 802 8.281531 TCTTTCCCAATATAAGATGGTCAACAT 58.718 33.333 0.00 0.00 44.18 2.71
801 812 2.920724 TGGTCAACATCCGACTCAAA 57.079 45.000 0.00 0.00 33.73 2.69
802 813 3.201353 TGGTCAACATCCGACTCAAAA 57.799 42.857 0.00 0.00 33.73 2.44
803 814 3.138304 TGGTCAACATCCGACTCAAAAG 58.862 45.455 0.00 0.00 33.73 2.27
804 815 3.181459 TGGTCAACATCCGACTCAAAAGA 60.181 43.478 0.00 0.00 33.73 2.52
805 816 3.813166 GGTCAACATCCGACTCAAAAGAA 59.187 43.478 0.00 0.00 33.73 2.52
806 817 4.274950 GGTCAACATCCGACTCAAAAGAAA 59.725 41.667 0.00 0.00 33.73 2.52
807 818 5.220970 GGTCAACATCCGACTCAAAAGAAAA 60.221 40.000 0.00 0.00 33.73 2.29
840 851 0.390124 ACTGGTGCGTTTCTTACCGA 59.610 50.000 0.00 0.00 37.29 4.69
884 895 2.223180 GGAAACTAATTAACGGCGCCAG 60.223 50.000 28.98 21.29 0.00 4.85
954 969 4.570663 CGAGCCTAACCCGCCTCG 62.571 72.222 0.00 0.00 0.00 4.63
977 992 4.082136 GGATCGTCAGAGTAGTTGGAGTTT 60.082 45.833 0.00 0.00 0.00 2.66
1401 1422 2.577059 GCCATGGAGTTCGTCGGA 59.423 61.111 18.40 0.00 0.00 4.55
1693 1714 0.247185 TGGGTCCACGAATTACGACC 59.753 55.000 0.00 0.00 45.77 4.79
2217 2238 9.468532 GGAAAAATAATTAGCATGAGTGGATTC 57.531 33.333 0.00 0.00 0.00 2.52
2221 2242 3.565764 TTAGCATGAGTGGATTCCCAG 57.434 47.619 0.00 0.00 44.55 4.45
2359 2382 2.423446 CTCCTATGCCGAGCCACC 59.577 66.667 0.00 0.00 0.00 4.61
2446 2543 3.306917 TGAATCACGTTTCTAGGCGAA 57.693 42.857 8.73 0.00 0.00 4.70
2694 2842 5.625150 ACTCTTGCAGTTTATCTCCAGTTT 58.375 37.500 0.00 0.00 26.56 2.66
2780 2930 4.974645 TGTATGAAGTCTCACACCCTTT 57.025 40.909 0.00 0.00 33.30 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 180 1.292223 GCTTACTCACTGGGTCGCA 59.708 57.895 0.00 0.0 0.00 5.10
192 193 0.394899 AGGCTGATGCTTGGGCTTAC 60.395 55.000 0.00 0.0 39.59 2.34
193 194 0.107017 GAGGCTGATGCTTGGGCTTA 60.107 55.000 0.00 0.0 39.59 3.09
194 195 1.379576 GAGGCTGATGCTTGGGCTT 60.380 57.895 0.00 0.0 39.59 4.35
289 290 3.517901 AGGAAACAATACATCGTGGGAGA 59.482 43.478 0.00 0.0 0.00 3.71
321 322 6.017934 CCTTAACTCACGGATGGTAATCAATG 60.018 42.308 0.00 0.0 34.17 2.82
454 456 7.905604 TGTAGAATCAATCACGAACAATCTT 57.094 32.000 0.00 0.0 0.00 2.40
663 673 1.272490 TGGTAGTCTCGCTTTCAGGTG 59.728 52.381 0.00 0.0 0.00 4.00
709 720 7.740519 AAGAACAAGCAATATATGTTTTCGC 57.259 32.000 0.00 0.0 37.41 4.70
710 721 8.947940 GCTAAGAACAAGCAATATATGTTTTCG 58.052 33.333 0.00 0.0 39.83 3.46
711 722 9.787532 TGCTAAGAACAAGCAATATATGTTTTC 57.212 29.630 0.00 0.0 46.57 2.29
745 756 9.227777 GGAAAGAAACACTGGTAGTTATGTAAT 57.772 33.333 0.00 0.0 0.00 1.89
746 757 7.662669 GGGAAAGAAACACTGGTAGTTATGTAA 59.337 37.037 0.00 0.0 0.00 2.41
747 758 7.163441 GGGAAAGAAACACTGGTAGTTATGTA 58.837 38.462 0.00 0.0 0.00 2.29
748 759 6.002082 GGGAAAGAAACACTGGTAGTTATGT 58.998 40.000 0.00 0.0 0.00 2.29
749 760 6.001460 TGGGAAAGAAACACTGGTAGTTATG 58.999 40.000 0.00 0.0 0.00 1.90
750 761 6.195600 TGGGAAAGAAACACTGGTAGTTAT 57.804 37.500 0.00 0.0 0.00 1.89
751 762 5.633655 TGGGAAAGAAACACTGGTAGTTA 57.366 39.130 0.00 0.0 0.00 2.24
752 763 4.513406 TGGGAAAGAAACACTGGTAGTT 57.487 40.909 0.00 0.0 0.00 2.24
753 764 4.513406 TTGGGAAAGAAACACTGGTAGT 57.487 40.909 0.00 0.0 0.00 2.73
754 765 8.801882 TTATATTGGGAAAGAAACACTGGTAG 57.198 34.615 0.00 0.0 0.00 3.18
755 766 8.607713 TCTTATATTGGGAAAGAAACACTGGTA 58.392 33.333 0.00 0.0 0.00 3.25
756 767 7.466804 TCTTATATTGGGAAAGAAACACTGGT 58.533 34.615 0.00 0.0 0.00 4.00
757 768 7.938140 TCTTATATTGGGAAAGAAACACTGG 57.062 36.000 0.00 0.0 0.00 4.00
758 769 8.408601 CCATCTTATATTGGGAAAGAAACACTG 58.591 37.037 0.00 0.0 33.26 3.66
759 770 8.116026 ACCATCTTATATTGGGAAAGAAACACT 58.884 33.333 0.00 0.0 37.32 3.55
760 771 8.293699 ACCATCTTATATTGGGAAAGAAACAC 57.706 34.615 0.00 0.0 37.32 3.32
761 772 8.112822 TGACCATCTTATATTGGGAAAGAAACA 58.887 33.333 0.00 0.0 37.32 2.83
762 773 8.519799 TGACCATCTTATATTGGGAAAGAAAC 57.480 34.615 0.00 0.0 37.32 2.78
763 774 8.966868 GTTGACCATCTTATATTGGGAAAGAAA 58.033 33.333 0.00 0.0 37.32 2.52
764 775 8.112822 TGTTGACCATCTTATATTGGGAAAGAA 58.887 33.333 0.00 0.0 37.32 2.52
765 776 7.638444 TGTTGACCATCTTATATTGGGAAAGA 58.362 34.615 0.00 0.0 37.32 2.52
766 777 7.880160 TGTTGACCATCTTATATTGGGAAAG 57.120 36.000 0.00 0.0 37.32 2.62
767 778 8.463930 GATGTTGACCATCTTATATTGGGAAA 57.536 34.615 0.00 0.0 45.50 3.13
781 792 3.417069 TTTGAGTCGGATGTTGACCAT 57.583 42.857 0.00 0.0 37.04 3.55
782 793 2.920724 TTTGAGTCGGATGTTGACCA 57.079 45.000 0.00 0.0 37.04 4.02
783 794 3.399330 TCTTTTGAGTCGGATGTTGACC 58.601 45.455 0.00 0.0 37.04 4.02
784 795 5.418310 TTTCTTTTGAGTCGGATGTTGAC 57.582 39.130 0.00 0.0 36.60 3.18
785 796 6.443934 TTTTTCTTTTGAGTCGGATGTTGA 57.556 33.333 0.00 0.0 0.00 3.18
807 818 4.217550 ACGCACCAGTGTTATGCTATTTTT 59.782 37.500 8.96 0.0 37.20 1.94
820 831 0.511221 CGGTAAGAAACGCACCAGTG 59.489 55.000 0.00 0.0 32.32 3.66
840 851 4.320057 CGCGTCGTACTCCTATTCCTATTT 60.320 45.833 0.00 0.0 0.00 1.40
954 969 3.018149 ACTCCAACTACTCTGACGATCC 58.982 50.000 0.00 0.0 0.00 3.36
977 992 2.559698 TTGCAACTAGGCAGCAACTA 57.440 45.000 12.75 0.0 45.88 2.24
1113 1128 3.782523 TCCCTATTGCAGACTTTGAGGAT 59.217 43.478 0.00 0.0 0.00 3.24
1154 1169 1.224592 CCCCCTTCACCGATCTTGG 59.775 63.158 0.00 0.0 0.00 3.61
1416 1437 2.157834 AACGGACGTGCTTCATAACA 57.842 45.000 5.27 0.0 0.00 2.41
1419 1440 1.342555 CGAAACGGACGTGCTTCATA 58.657 50.000 5.27 0.0 0.00 2.15
1626 1647 2.099921 CCGTGTTCCAATGTGGTTTGAA 59.900 45.455 0.00 0.0 39.03 2.69
1693 1714 2.169789 CCCAAGAGTCGATGCGCTG 61.170 63.158 9.73 0.0 0.00 5.18
2217 2238 1.838913 CAAACAAAGACGTTGCTGGG 58.161 50.000 0.66 0.0 41.31 4.45
2221 2242 1.199624 CAGGCAAACAAAGACGTTGC 58.800 50.000 0.66 0.0 41.31 4.17
2359 2382 2.438434 GGAGGTTGATGGGTGCCG 60.438 66.667 0.00 0.0 0.00 5.69
2446 2543 6.363167 ACATTTCCATTTGTTGATGGTCAT 57.637 33.333 4.02 0.0 45.53 3.06
2694 2842 0.393132 AGATCGTCTCGCTCAGGTCA 60.393 55.000 0.00 0.0 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.