Multiple sequence alignment - TraesCS3D01G028100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G028100 chr3D 100.000 3601 0 0 1 3601 9680587 9676987 0.000000e+00 6650.0
1 TraesCS3D01G028100 chr3D 86.317 1469 155 21 1063 2488 4995217 4996682 0.000000e+00 1557.0
2 TraesCS3D01G028100 chr3D 72.287 1447 308 66 1021 2434 28218141 28216755 7.350000e-97 364.0
3 TraesCS3D01G028100 chr3D 72.149 1210 260 56 1263 2433 28275257 28276428 2.720000e-76 296.0
4 TraesCS3D01G028100 chr3B 86.581 1401 108 27 1104 2477 13821863 13820516 0.000000e+00 1472.0
5 TraesCS3D01G028100 chr3B 76.386 1389 262 46 1172 2522 13971931 13970571 0.000000e+00 688.0
6 TraesCS3D01G028100 chr3B 72.076 1368 294 65 1133 2466 47211194 47209881 2.680000e-86 329.0
7 TraesCS3D01G028100 chr3B 72.182 1251 269 58 1257 2466 47269892 47271104 3.490000e-80 309.0
8 TraesCS3D01G028100 chr3B 83.704 135 19 2 2669 2803 46306230 46306361 1.360000e-24 124.0
9 TraesCS3D01G028100 chr3B 91.667 48 4 0 2886 2933 46307811 46307858 2.320000e-07 67.6
10 TraesCS3D01G028100 chrUn 92.553 846 59 4 1644 2488 257141447 257140605 0.000000e+00 1210.0
11 TraesCS3D01G028100 chrUn 92.553 846 59 4 1644 2488 279872552 279873394 0.000000e+00 1210.0
12 TraesCS3D01G028100 chrUn 91.384 708 51 3 1 701 214880193 214880897 0.000000e+00 961.0
13 TraesCS3D01G028100 chrUn 78.973 1460 255 38 1063 2478 299358215 299359666 0.000000e+00 948.0
14 TraesCS3D01G028100 chrUn 78.576 1489 251 39 1066 2505 225561825 225560356 0.000000e+00 920.0
15 TraesCS3D01G028100 chrUn 78.807 1458 243 37 1066 2474 237462545 237463985 0.000000e+00 920.0
16 TraesCS3D01G028100 chrUn 78.807 1458 243 37 1066 2474 257674261 257675701 0.000000e+00 920.0
17 TraesCS3D01G028100 chrUn 78.807 1458 243 37 1066 2474 279684402 279685842 0.000000e+00 920.0
18 TraesCS3D01G028100 chrUn 78.140 1473 251 48 1097 2518 208776358 208774906 0.000000e+00 870.0
19 TraesCS3D01G028100 chrUn 78.405 1417 248 35 1121 2509 306116771 306115385 0.000000e+00 869.0
20 TraesCS3D01G028100 chrUn 75.748 1571 294 55 1276 2817 197241982 197240470 0.000000e+00 710.0
21 TraesCS3D01G028100 chrUn 85.197 608 68 6 1133 1719 257142035 257141429 3.980000e-169 604.0
22 TraesCS3D01G028100 chrUn 82.545 613 95 8 146 754 271162419 271161815 2.460000e-146 529.0
23 TraesCS3D01G028100 chrUn 82.545 613 95 8 146 754 289937233 289936629 2.460000e-146 529.0
24 TraesCS3D01G028100 chrUn 93.358 271 13 4 686 955 36352392 36352126 2.610000e-106 396.0
25 TraesCS3D01G028100 chrUn 93.657 268 12 4 686 952 214882613 214882876 2.610000e-106 396.0
26 TraesCS3D01G028100 chrUn 85.354 396 40 8 1097 1476 271164897 271164504 9.370000e-106 394.0
27 TraesCS3D01G028100 chrUn 78.889 540 78 17 144 681 291896013 291896518 2.070000e-87 333.0
28 TraesCS3D01G028100 chrUn 78.889 540 78 17 144 681 354703944 354704449 2.070000e-87 333.0
29 TraesCS3D01G028100 chrUn 84.228 298 38 5 2935 3231 240816214 240816503 7.610000e-72 281.0
30 TraesCS3D01G028100 chrUn 76.012 321 48 19 3285 3594 331677604 331677302 4.850000e-29 139.0
31 TraesCS3D01G028100 chrUn 93.333 45 3 0 1109 1153 236403585 236403541 2.320000e-07 67.6
32 TraesCS3D01G028100 chrUn 97.368 38 1 0 1572 1609 35963582 35963545 8.350000e-07 65.8
33 TraesCS3D01G028100 chrUn 97.297 37 1 0 3535 3571 314989518 314989482 3.000000e-06 63.9
34 TraesCS3D01G028100 chrUn 97.222 36 1 0 3536 3571 272111947 272111982 1.080000e-05 62.1
35 TraesCS3D01G028100 chr3A 78.973 1460 255 38 1063 2478 11126582 11128033 0.000000e+00 948.0
36 TraesCS3D01G028100 chr3A 78.973 1460 255 38 1063 2478 11135233 11136684 0.000000e+00 948.0
37 TraesCS3D01G028100 chr3A 78.973 1460 255 38 1063 2478 11142105 11143556 0.000000e+00 948.0
38 TraesCS3D01G028100 chr3A 79.009 1291 220 38 1224 2488 10940540 10941805 0.000000e+00 835.0
39 TraesCS3D01G028100 chr3A 94.005 367 21 1 2109 2474 10877938 10878304 4.060000e-154 555.0
40 TraesCS3D01G028100 chr3A 84.395 314 38 10 2935 3245 11128830 11129135 7.560000e-77 298.0
41 TraesCS3D01G028100 chr3A 84.395 314 38 10 2935 3245 11137481 11137786 7.560000e-77 298.0
42 TraesCS3D01G028100 chr3A 79.751 321 41 17 3285 3601 10943636 10943936 1.010000e-50 211.0
43 TraesCS3D01G028100 chr3A 78.788 165 31 3 1298 1460 10361038 10361200 1.370000e-19 108.0
44 TraesCS3D01G028100 chr3A 75.497 151 33 3 2787 2933 11128569 11128719 1.790000e-08 71.3
45 TraesCS3D01G028100 chr3A 75.497 151 33 3 2787 2933 11137220 11137370 1.790000e-08 71.3
46 TraesCS3D01G028100 chr2B 71.927 1261 269 68 1251 2471 58086942 58085727 4.550000e-74 289.0
47 TraesCS3D01G028100 chr2B 80.465 215 38 4 1247 1459 58298457 58298245 1.030000e-35 161.0
48 TraesCS3D01G028100 chr2A 72.101 1190 243 62 1313 2471 38348387 38347256 3.540000e-70 276.0
49 TraesCS3D01G028100 chr2A 72.152 1185 239 64 1313 2465 38590305 38591430 3.540000e-70 276.0
50 TraesCS3D01G028100 chr2D 71.345 1197 256 67 1313 2471 35231107 35229960 2.800000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G028100 chr3D 9676987 9680587 3600 True 6650.0 6650 100.000000 1 3601 1 chr3D.!!$R1 3600
1 TraesCS3D01G028100 chr3D 4995217 4996682 1465 False 1557.0 1557 86.317000 1063 2488 1 chr3D.!!$F1 1425
2 TraesCS3D01G028100 chr3D 28216755 28218141 1386 True 364.0 364 72.287000 1021 2434 1 chr3D.!!$R2 1413
3 TraesCS3D01G028100 chr3D 28275257 28276428 1171 False 296.0 296 72.149000 1263 2433 1 chr3D.!!$F2 1170
4 TraesCS3D01G028100 chr3B 13820516 13821863 1347 True 1472.0 1472 86.581000 1104 2477 1 chr3B.!!$R1 1373
5 TraesCS3D01G028100 chr3B 13970571 13971931 1360 True 688.0 688 76.386000 1172 2522 1 chr3B.!!$R2 1350
6 TraesCS3D01G028100 chr3B 47209881 47211194 1313 True 329.0 329 72.076000 1133 2466 1 chr3B.!!$R3 1333
7 TraesCS3D01G028100 chr3B 47269892 47271104 1212 False 309.0 309 72.182000 1257 2466 1 chr3B.!!$F1 1209
8 TraesCS3D01G028100 chrUn 279872552 279873394 842 False 1210.0 1210 92.553000 1644 2488 1 chrUn.!!$F6 844
9 TraesCS3D01G028100 chrUn 299358215 299359666 1451 False 948.0 948 78.973000 1063 2478 1 chrUn.!!$F8 1415
10 TraesCS3D01G028100 chrUn 225560356 225561825 1469 True 920.0 920 78.576000 1066 2505 1 chrUn.!!$R5 1439
11 TraesCS3D01G028100 chrUn 237462545 237463985 1440 False 920.0 920 78.807000 1066 2474 1 chrUn.!!$F1 1408
12 TraesCS3D01G028100 chrUn 257674261 257675701 1440 False 920.0 920 78.807000 1066 2474 1 chrUn.!!$F3 1408
13 TraesCS3D01G028100 chrUn 279684402 279685842 1440 False 920.0 920 78.807000 1066 2474 1 chrUn.!!$F5 1408
14 TraesCS3D01G028100 chrUn 257140605 257142035 1430 True 907.0 1210 88.875000 1133 2488 2 chrUn.!!$R11 1355
15 TraesCS3D01G028100 chrUn 208774906 208776358 1452 True 870.0 870 78.140000 1097 2518 1 chrUn.!!$R4 1421
16 TraesCS3D01G028100 chrUn 306115385 306116771 1386 True 869.0 869 78.405000 1121 2509 1 chrUn.!!$R8 1388
17 TraesCS3D01G028100 chrUn 197240470 197241982 1512 True 710.0 710 75.748000 1276 2817 1 chrUn.!!$R3 1541
18 TraesCS3D01G028100 chrUn 214880193 214882876 2683 False 678.5 961 92.520500 1 952 2 chrUn.!!$F10 951
19 TraesCS3D01G028100 chrUn 289936629 289937233 604 True 529.0 529 82.545000 146 754 1 chrUn.!!$R7 608
20 TraesCS3D01G028100 chrUn 271161815 271164897 3082 True 461.5 529 83.949500 146 1476 2 chrUn.!!$R12 1330
21 TraesCS3D01G028100 chrUn 291896013 291896518 505 False 333.0 333 78.889000 144 681 1 chrUn.!!$F7 537
22 TraesCS3D01G028100 chrUn 354703944 354704449 505 False 333.0 333 78.889000 144 681 1 chrUn.!!$F9 537
23 TraesCS3D01G028100 chr3A 11142105 11143556 1451 False 948.0 948 78.973000 1063 2478 1 chr3A.!!$F3 1415
24 TraesCS3D01G028100 chr3A 10940540 10943936 3396 False 523.0 835 79.380000 1224 3601 2 chr3A.!!$F4 2377
25 TraesCS3D01G028100 chr3A 11126582 11129135 2553 False 439.1 948 79.621667 1063 3245 3 chr3A.!!$F5 2182
26 TraesCS3D01G028100 chr3A 11135233 11137786 2553 False 439.1 948 79.621667 1063 3245 3 chr3A.!!$F6 2182
27 TraesCS3D01G028100 chr2B 58085727 58086942 1215 True 289.0 289 71.927000 1251 2471 1 chr2B.!!$R1 1220
28 TraesCS3D01G028100 chr2A 38347256 38348387 1131 True 276.0 276 72.101000 1313 2471 1 chr2A.!!$R1 1158
29 TraesCS3D01G028100 chr2A 38590305 38591430 1125 False 276.0 276 72.152000 1313 2465 1 chr2A.!!$F1 1152
30 TraesCS3D01G028100 chr2D 35229960 35231107 1147 True 230.0 230 71.345000 1313 2471 1 chr2D.!!$R1 1158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 591 0.030235 GTTGAGGGGTTTGACAACGC 59.970 55.0 0.00 0.00 43.55 4.84 F
1005 2747 0.031716 TCCCCACTCATCTCCTCTGG 60.032 60.0 0.00 0.00 0.00 3.86 F
1009 2751 0.464870 CACTCATCTCCTCTGGCCAG 59.535 60.0 27.87 27.87 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2480 6123 0.108138 AGGACGGCTGTTAGTGCATC 60.108 55.0 0.0 0.0 0.00 3.91 R
2481 6124 0.391661 CAGGACGGCTGTTAGTGCAT 60.392 55.0 0.0 0.0 0.00 3.96 R
2891 6931 1.026182 TCACATCCACGAGCAATGGC 61.026 55.0 0.0 0.0 37.13 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.451402 AAGGGGACAAGGTTTATGGTC 57.549 47.619 0.00 0.00 0.00 4.02
57 58 2.926329 AGGGGACAAGGTTTATGGTCAT 59.074 45.455 0.00 0.00 32.00 3.06
70 71 8.227507 AGGTTTATGGTCATAGAAATGCCTAAT 58.772 33.333 0.00 0.00 33.18 1.73
142 150 0.915364 GAATCTTCTGGGCCTCCTGT 59.085 55.000 4.53 0.00 34.13 4.00
155 163 1.202463 CCTCCTGTCAAGCTCGTATGG 60.202 57.143 0.00 0.00 0.00 2.74
234 242 4.082125 GGGTCATCTTTGAATCTTGTGGT 58.918 43.478 0.00 0.00 32.48 4.16
258 267 2.703007 GCCACCTGTCTCCATTCTATCT 59.297 50.000 0.00 0.00 0.00 1.98
284 293 1.750206 GAGAGGTCGTAGAAGAACCCC 59.250 57.143 0.00 0.00 39.69 4.95
296 305 3.828451 AGAAGAACCCCACATTCACAATG 59.172 43.478 0.00 0.00 44.48 2.82
299 308 2.897271 ACCCCACATTCACAATGCTA 57.103 45.000 0.00 0.00 42.69 3.49
330 339 4.401022 TGAAGCTTCATGAAGGATGTGTT 58.599 39.130 31.41 5.70 38.80 3.32
333 342 2.165030 GCTTCATGAAGGATGTGTTGGG 59.835 50.000 31.41 7.89 38.80 4.12
340 349 3.244735 TGAAGGATGTGTTGGGATTTCGA 60.245 43.478 0.00 0.00 0.00 3.71
385 395 2.725312 TTCCAGCTGGCTCTAGGCG 61.725 63.158 28.91 0.67 44.42 5.52
424 434 4.501915 CCCGAGGGCGTTATTAACTTCATA 60.502 45.833 5.11 0.00 35.23 2.15
448 458 4.469657 AGTCATTGTTGCAGGAAACCTTA 58.530 39.130 0.00 0.00 0.00 2.69
474 484 3.452474 CTCCTATGTTCTGAGCGAAAGG 58.548 50.000 0.00 1.78 32.41 3.11
489 499 0.749454 AAAGGTCAGCGATGATGGGC 60.749 55.000 6.66 0.00 0.00 5.36
490 500 2.930385 AAGGTCAGCGATGATGGGCG 62.930 60.000 6.66 0.00 0.00 6.13
507 517 1.781555 CGCATGTGGTCTTCGTGAC 59.218 57.895 0.00 3.42 44.63 3.67
559 569 6.665248 ACTTATCCTCGATGATGATGATGGTA 59.335 38.462 12.84 0.00 0.00 3.25
562 572 5.727434 TCCTCGATGATGATGATGGTATTG 58.273 41.667 0.00 0.00 0.00 1.90
579 589 4.261867 GGTATTGTTGAGGGGTTTGACAAC 60.262 45.833 0.00 0.00 41.64 3.32
581 591 0.030235 GTTGAGGGGTTTGACAACGC 59.970 55.000 0.00 0.00 43.55 4.84
604 614 1.464608 CCTAATGGCGTCACAACACTG 59.535 52.381 0.00 0.00 0.00 3.66
616 626 1.604593 AACACTGCCATGTGCTCCC 60.605 57.895 7.54 0.00 41.30 4.30
655 665 1.439228 CGACCATCCATGCTCGACT 59.561 57.895 0.00 0.00 37.93 4.18
661 671 2.224233 CCATCCATGCTCGACTCTTCAT 60.224 50.000 0.00 0.00 0.00 2.57
668 678 1.208293 GCTCGACTCTTCATCCCCTTT 59.792 52.381 0.00 0.00 0.00 3.11
681 691 0.960861 CCCCTTTTGGCGAACTCCTC 60.961 60.000 0.00 0.00 38.58 3.71
691 701 0.457853 CGAACTCCTCCGCAAATCGA 60.458 55.000 0.00 0.00 41.67 3.59
707 2448 5.466728 GCAAATCGACATCCTTCTAAGCATA 59.533 40.000 0.00 0.00 0.00 3.14
730 2471 4.019174 CTCCAAAATGTTCACCTAGCCAT 58.981 43.478 0.00 0.00 0.00 4.40
745 2486 1.689243 GCCATCATTTTGGAGCCCCC 61.689 60.000 0.00 0.00 39.25 5.40
764 2505 1.928503 CCGTTGTTGTTGTGTCGTACT 59.071 47.619 0.00 0.00 0.00 2.73
793 2534 4.095590 CCTTGGGCAACGACCATT 57.904 55.556 0.00 0.00 42.18 3.16
807 2548 2.480419 CGACCATTCTTCTTGTGGACAC 59.520 50.000 0.00 0.00 36.82 3.67
824 2565 3.311322 GGACACACATCAACGTGAAGAAA 59.689 43.478 0.00 0.00 39.34 2.52
825 2566 4.518217 GACACACATCAACGTGAAGAAAG 58.482 43.478 0.00 0.00 39.34 2.62
826 2567 3.242739 ACACACATCAACGTGAAGAAAGC 60.243 43.478 0.00 0.00 39.34 3.51
827 2568 3.002656 CACACATCAACGTGAAGAAAGCT 59.997 43.478 0.00 0.00 39.34 3.74
829 2570 4.814234 ACACATCAACGTGAAGAAAGCTAA 59.186 37.500 0.00 0.00 39.34 3.09
830 2571 5.470098 ACACATCAACGTGAAGAAAGCTAAT 59.530 36.000 0.00 0.00 39.34 1.73
831 2572 6.017109 ACACATCAACGTGAAGAAAGCTAATT 60.017 34.615 0.00 0.00 39.34 1.40
832 2573 7.172532 ACACATCAACGTGAAGAAAGCTAATTA 59.827 33.333 0.00 0.00 39.34 1.40
833 2574 8.015087 CACATCAACGTGAAGAAAGCTAATTAA 58.985 33.333 0.00 0.00 39.34 1.40
872 2613 3.626028 AACAACTGGTGAGAAAATCGC 57.374 42.857 0.00 0.00 37.73 4.58
952 2694 6.603201 TGCTTGGAGAAAAGAAGAAGAAGAAA 59.397 34.615 0.00 0.00 0.00 2.52
953 2695 7.122650 TGCTTGGAGAAAAGAAGAAGAAGAAAA 59.877 33.333 0.00 0.00 0.00 2.29
954 2696 7.647318 GCTTGGAGAAAAGAAGAAGAAGAAAAG 59.353 37.037 0.00 0.00 0.00 2.27
955 2697 7.032377 TGGAGAAAAGAAGAAGAAGAAAAGC 57.968 36.000 0.00 0.00 0.00 3.51
956 2698 6.603201 TGGAGAAAAGAAGAAGAAGAAAAGCA 59.397 34.615 0.00 0.00 0.00 3.91
957 2699 7.138081 GGAGAAAAGAAGAAGAAGAAAAGCAG 58.862 38.462 0.00 0.00 0.00 4.24
958 2700 6.502652 AGAAAAGAAGAAGAAGAAAAGCAGC 58.497 36.000 0.00 0.00 0.00 5.25
959 2701 5.841957 AAAGAAGAAGAAGAAAAGCAGCA 57.158 34.783 0.00 0.00 0.00 4.41
960 2702 5.435820 AAGAAGAAGAAGAAAAGCAGCAG 57.564 39.130 0.00 0.00 0.00 4.24
961 2703 4.712476 AGAAGAAGAAGAAAAGCAGCAGA 58.288 39.130 0.00 0.00 0.00 4.26
962 2704 4.514816 AGAAGAAGAAGAAAAGCAGCAGAC 59.485 41.667 0.00 0.00 0.00 3.51
963 2705 2.805099 AGAAGAAGAAAAGCAGCAGACG 59.195 45.455 0.00 0.00 0.00 4.18
964 2706 1.517242 AGAAGAAAAGCAGCAGACGG 58.483 50.000 0.00 0.00 0.00 4.79
965 2707 1.070758 AGAAGAAAAGCAGCAGACGGA 59.929 47.619 0.00 0.00 0.00 4.69
966 2708 1.195674 GAAGAAAAGCAGCAGACGGAC 59.804 52.381 0.00 0.00 0.00 4.79
967 2709 0.946221 AGAAAAGCAGCAGACGGACG 60.946 55.000 0.00 0.00 0.00 4.79
968 2710 1.901650 GAAAAGCAGCAGACGGACGG 61.902 60.000 0.00 0.00 0.00 4.79
969 2711 3.883744 AAAGCAGCAGACGGACGGG 62.884 63.158 0.00 0.00 0.00 5.28
972 2714 4.436998 CAGCAGACGGACGGGACC 62.437 72.222 0.00 0.00 0.00 4.46
973 2715 4.988716 AGCAGACGGACGGGACCA 62.989 66.667 0.00 0.00 0.00 4.02
974 2716 3.998672 GCAGACGGACGGGACCAA 61.999 66.667 0.00 0.00 0.00 3.67
975 2717 2.738480 CAGACGGACGGGACCAAA 59.262 61.111 0.00 0.00 0.00 3.28
976 2718 1.295423 CAGACGGACGGGACCAAAT 59.705 57.895 0.00 0.00 0.00 2.32
977 2719 0.739813 CAGACGGACGGGACCAAATC 60.740 60.000 0.00 0.00 0.00 2.17
978 2720 1.808390 GACGGACGGGACCAAATCG 60.808 63.158 0.00 0.00 0.00 3.34
979 2721 2.216750 GACGGACGGGACCAAATCGA 62.217 60.000 0.00 0.00 0.00 3.59
980 2722 1.808390 CGGACGGGACCAAATCGAC 60.808 63.158 0.00 0.00 0.00 4.20
981 2723 1.808390 GGACGGGACCAAATCGACG 60.808 63.158 0.00 0.00 35.29 5.12
982 2724 2.433664 ACGGGACCAAATCGACGC 60.434 61.111 0.00 0.00 33.18 5.19
983 2725 3.192922 CGGGACCAAATCGACGCC 61.193 66.667 0.00 0.00 0.00 5.68
984 2726 2.046700 GGGACCAAATCGACGCCA 60.047 61.111 0.00 0.00 0.00 5.69
985 2727 2.396157 GGGACCAAATCGACGCCAC 61.396 63.158 0.00 0.00 0.00 5.01
986 2728 1.375523 GGACCAAATCGACGCCACT 60.376 57.895 0.00 0.00 0.00 4.00
987 2729 1.359459 GGACCAAATCGACGCCACTC 61.359 60.000 0.00 0.00 0.00 3.51
988 2730 1.359459 GACCAAATCGACGCCACTCC 61.359 60.000 0.00 0.00 0.00 3.85
989 2731 2.106683 CCAAATCGACGCCACTCCC 61.107 63.158 0.00 0.00 0.00 4.30
990 2732 2.106683 CAAATCGACGCCACTCCCC 61.107 63.158 0.00 0.00 0.00 4.81
991 2733 2.589157 AAATCGACGCCACTCCCCA 61.589 57.895 0.00 0.00 0.00 4.96
992 2734 2.798148 AAATCGACGCCACTCCCCAC 62.798 60.000 0.00 0.00 0.00 4.61
993 2735 4.988716 TCGACGCCACTCCCCACT 62.989 66.667 0.00 0.00 0.00 4.00
994 2736 4.436998 CGACGCCACTCCCCACTC 62.437 72.222 0.00 0.00 0.00 3.51
995 2737 3.311110 GACGCCACTCCCCACTCA 61.311 66.667 0.00 0.00 0.00 3.41
996 2738 2.607750 ACGCCACTCCCCACTCAT 60.608 61.111 0.00 0.00 0.00 2.90
997 2739 2.187946 CGCCACTCCCCACTCATC 59.812 66.667 0.00 0.00 0.00 2.92
998 2740 2.362369 CGCCACTCCCCACTCATCT 61.362 63.158 0.00 0.00 0.00 2.90
999 2741 1.524482 GCCACTCCCCACTCATCTC 59.476 63.158 0.00 0.00 0.00 2.75
1000 2742 1.977293 GCCACTCCCCACTCATCTCC 61.977 65.000 0.00 0.00 0.00 3.71
1001 2743 0.326048 CCACTCCCCACTCATCTCCT 60.326 60.000 0.00 0.00 0.00 3.69
1002 2744 1.118838 CACTCCCCACTCATCTCCTC 58.881 60.000 0.00 0.00 0.00 3.71
1003 2745 1.014804 ACTCCCCACTCATCTCCTCT 58.985 55.000 0.00 0.00 0.00 3.69
1004 2746 1.342874 ACTCCCCACTCATCTCCTCTG 60.343 57.143 0.00 0.00 0.00 3.35
1005 2747 0.031716 TCCCCACTCATCTCCTCTGG 60.032 60.000 0.00 0.00 0.00 3.86
1006 2748 1.694133 CCCCACTCATCTCCTCTGGC 61.694 65.000 0.00 0.00 0.00 4.85
1007 2749 1.694133 CCCACTCATCTCCTCTGGCC 61.694 65.000 0.00 0.00 0.00 5.36
1008 2750 0.979709 CCACTCATCTCCTCTGGCCA 60.980 60.000 4.71 4.71 0.00 5.36
1009 2751 0.464870 CACTCATCTCCTCTGGCCAG 59.535 60.000 27.87 27.87 0.00 4.85
1010 2752 1.336632 ACTCATCTCCTCTGGCCAGC 61.337 60.000 28.91 0.00 0.00 4.85
1011 2753 1.002662 TCATCTCCTCTGGCCAGCT 59.997 57.895 28.91 4.98 0.00 4.24
1012 2754 1.047596 TCATCTCCTCTGGCCAGCTC 61.048 60.000 28.91 0.00 0.00 4.09
1013 2755 2.132996 ATCTCCTCTGGCCAGCTCG 61.133 63.158 28.91 17.49 0.00 5.03
1014 2756 4.527583 CTCCTCTGGCCAGCTCGC 62.528 72.222 28.91 0.00 0.00 5.03
1016 2758 3.150335 CCTCTGGCCAGCTCGCTA 61.150 66.667 28.91 8.76 0.00 4.26
1017 2759 2.416678 CTCTGGCCAGCTCGCTAG 59.583 66.667 28.91 15.10 38.61 3.42
1018 2760 3.149338 CTCTGGCCAGCTCGCTAGG 62.149 68.421 28.91 1.59 37.88 3.02
1019 2761 3.465403 CTGGCCAGCTCGCTAGGT 61.465 66.667 22.33 0.00 33.96 3.08
1030 2772 1.950909 CTCGCTAGGTCTAGGTCTTGG 59.049 57.143 7.08 0.00 33.87 3.61
1094 2847 3.483869 GCGGCTCCTTCCCCAGAT 61.484 66.667 0.00 0.00 0.00 2.90
1098 2851 1.529309 GCTCCTTCCCCAGATCCAC 59.471 63.158 0.00 0.00 0.00 4.02
1100 2853 2.190578 CCTTCCCCAGATCCACGC 59.809 66.667 0.00 0.00 0.00 5.34
1101 2854 2.202932 CTTCCCCAGATCCACGCG 60.203 66.667 3.53 3.53 0.00 6.01
1102 2855 2.682136 TTCCCCAGATCCACGCGA 60.682 61.111 15.93 0.00 0.00 5.87
1461 4239 1.542915 CCACTCCTCGGTTTCTTCGTA 59.457 52.381 0.00 0.00 0.00 3.43
1466 4244 2.886523 TCCTCGGTTTCTTCGTACAAGA 59.113 45.455 0.00 0.00 0.00 3.02
1479 4263 2.081462 GTACAAGACGGGGATGGTTTG 58.919 52.381 0.00 0.00 0.00 2.93
1480 4264 0.893727 ACAAGACGGGGATGGTTTGC 60.894 55.000 0.00 0.00 0.00 3.68
1519 4306 2.123597 CTCCCGACCGTATCCCCA 60.124 66.667 0.00 0.00 0.00 4.96
1787 4689 1.429930 TTCAAGGTGGTCCTGCTGTA 58.570 50.000 0.00 0.00 44.35 2.74
1907 4838 7.545362 AGTTTTGTCATACTGATAGTCATGC 57.455 36.000 0.00 0.00 0.00 4.06
1964 4911 6.040955 TGCAGAGGTGGAGATTACATACTTAG 59.959 42.308 0.00 0.00 0.00 2.18
2406 5952 5.083122 TGCCAGGTGATTTTTCATCCTTAA 58.917 37.500 0.00 0.00 0.00 1.85
2466 6109 7.040132 TGTTTTGTACATGGATGCTTGAATACA 60.040 33.333 7.12 3.77 0.00 2.29
2474 6117 6.135290 TGGATGCTTGAATACATTTGCTAC 57.865 37.500 0.00 0.00 0.00 3.58
2478 6121 8.517878 GGATGCTTGAATACATTTGCTACATAT 58.482 33.333 0.00 0.00 0.00 1.78
2481 6124 9.777297 TGCTTGAATACATTTGCTACATATAGA 57.223 29.630 0.00 0.00 0.00 1.98
2485 6128 9.723601 TGAATACATTTGCTACATATAGATGCA 57.276 29.630 0.00 0.00 36.43 3.96
2486 6129 9.979270 GAATACATTTGCTACATATAGATGCAC 57.021 33.333 0.00 0.00 36.43 4.57
2487 6130 9.730705 AATACATTTGCTACATATAGATGCACT 57.269 29.630 0.00 0.00 36.43 4.40
2490 6133 8.993121 ACATTTGCTACATATAGATGCACTAAC 58.007 33.333 0.00 0.00 36.43 2.34
2492 6135 8.593492 TTTGCTACATATAGATGCACTAACAG 57.407 34.615 0.00 0.00 36.43 3.16
2493 6136 6.159293 TGCTACATATAGATGCACTAACAGC 58.841 40.000 0.00 0.92 36.43 4.40
2494 6137 5.578727 GCTACATATAGATGCACTAACAGCC 59.421 44.000 0.00 0.00 36.43 4.85
2495 6138 4.560128 ACATATAGATGCACTAACAGCCG 58.440 43.478 0.00 0.00 36.43 5.52
2497 6140 2.579207 TAGATGCACTAACAGCCGTC 57.421 50.000 0.00 0.00 0.00 4.79
2498 6141 0.108138 AGATGCACTAACAGCCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
2499 6142 0.108138 GATGCACTAACAGCCGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
2500 6143 6.531950 ATAGATGCACTAACAGCCGTCCTG 62.532 50.000 0.00 0.00 38.96 3.86
2522 6165 9.778741 TCCTGTTTATCATTCCATATAGTTGTC 57.221 33.333 0.00 0.00 0.00 3.18
2523 6166 9.784531 CCTGTTTATCATTCCATATAGTTGTCT 57.215 33.333 0.00 0.00 0.00 3.41
2525 6168 9.778741 TGTTTATCATTCCATATAGTTGTCTCC 57.221 33.333 0.00 0.00 0.00 3.71
2526 6169 9.778741 GTTTATCATTCCATATAGTTGTCTCCA 57.221 33.333 0.00 0.00 0.00 3.86
2527 6170 9.778741 TTTATCATTCCATATAGTTGTCTCCAC 57.221 33.333 0.00 0.00 0.00 4.02
2528 6171 7.623999 ATCATTCCATATAGTTGTCTCCACT 57.376 36.000 0.00 0.00 0.00 4.00
2530 6173 6.384015 TCATTCCATATAGTTGTCTCCACTGT 59.616 38.462 0.00 0.00 0.00 3.55
2532 6175 6.222038 TCCATATAGTTGTCTCCACTGTTC 57.778 41.667 0.00 0.00 0.00 3.18
2534 6177 5.394224 CCATATAGTTGTCTCCACTGTTCGT 60.394 44.000 0.00 0.00 0.00 3.85
2535 6178 6.183360 CCATATAGTTGTCTCCACTGTTCGTA 60.183 42.308 0.00 0.00 0.00 3.43
2536 6179 5.916661 ATAGTTGTCTCCACTGTTCGTAT 57.083 39.130 0.00 0.00 0.00 3.06
2537 6180 3.914312 AGTTGTCTCCACTGTTCGTATG 58.086 45.455 0.00 0.00 0.00 2.39
2538 6181 2.363788 TGTCTCCACTGTTCGTATGC 57.636 50.000 0.00 0.00 0.00 3.14
2539 6182 1.893137 TGTCTCCACTGTTCGTATGCT 59.107 47.619 0.00 0.00 0.00 3.79
2540 6183 3.086282 TGTCTCCACTGTTCGTATGCTA 58.914 45.455 0.00 0.00 0.00 3.49
2541 6184 3.128764 TGTCTCCACTGTTCGTATGCTAG 59.871 47.826 0.00 0.00 0.00 3.42
2542 6185 3.377485 GTCTCCACTGTTCGTATGCTAGA 59.623 47.826 0.00 0.00 0.00 2.43
2543 6186 4.036971 GTCTCCACTGTTCGTATGCTAGAT 59.963 45.833 0.00 0.00 0.00 1.98
2544 6187 5.238868 GTCTCCACTGTTCGTATGCTAGATA 59.761 44.000 0.00 0.00 0.00 1.98
2545 6188 5.238868 TCTCCACTGTTCGTATGCTAGATAC 59.761 44.000 0.00 0.00 0.00 2.24
2546 6189 4.885325 TCCACTGTTCGTATGCTAGATACA 59.115 41.667 0.00 0.00 0.00 2.29
2547 6190 4.976731 CCACTGTTCGTATGCTAGATACAC 59.023 45.833 0.00 0.00 0.00 2.90
2548 6191 5.449999 CCACTGTTCGTATGCTAGATACACA 60.450 44.000 0.00 0.78 0.00 3.72
2549 6192 6.033966 CACTGTTCGTATGCTAGATACACAA 58.966 40.000 0.00 0.00 0.00 3.33
2550 6193 6.197282 CACTGTTCGTATGCTAGATACACAAG 59.803 42.308 0.00 0.00 0.00 3.16
2551 6194 5.041287 TGTTCGTATGCTAGATACACAAGC 58.959 41.667 0.00 0.00 36.77 4.01
2552 6195 5.163550 TGTTCGTATGCTAGATACACAAGCT 60.164 40.000 0.00 0.00 37.16 3.74
2553 6196 5.515797 TCGTATGCTAGATACACAAGCTT 57.484 39.130 0.00 0.00 37.16 3.74
2554 6197 6.628919 TCGTATGCTAGATACACAAGCTTA 57.371 37.500 0.00 0.00 37.16 3.09
2555 6198 7.215719 TCGTATGCTAGATACACAAGCTTAT 57.784 36.000 0.00 0.00 37.16 1.73
2556 6199 8.331730 TCGTATGCTAGATACACAAGCTTATA 57.668 34.615 0.00 0.00 37.16 0.98
2557 6200 8.235226 TCGTATGCTAGATACACAAGCTTATAC 58.765 37.037 0.00 0.00 37.16 1.47
2558 6201 7.485277 CGTATGCTAGATACACAAGCTTATACC 59.515 40.741 0.00 0.00 37.16 2.73
2559 6202 6.097915 TGCTAGATACACAAGCTTATACCC 57.902 41.667 0.00 0.00 37.16 3.69
2560 6203 5.839063 TGCTAGATACACAAGCTTATACCCT 59.161 40.000 0.00 0.00 37.16 4.34
2561 6204 6.326583 TGCTAGATACACAAGCTTATACCCTT 59.673 38.462 0.00 0.00 37.16 3.95
2562 6205 7.507956 TGCTAGATACACAAGCTTATACCCTTA 59.492 37.037 0.00 0.00 37.16 2.69
2563 6206 8.532819 GCTAGATACACAAGCTTATACCCTTAT 58.467 37.037 0.00 0.00 33.40 1.73
2591 6234 7.786178 TGGTGTTATCACTCAATATAGTTGC 57.214 36.000 4.02 0.00 43.41 4.17
2592 6235 7.334858 TGGTGTTATCACTCAATATAGTTGCA 58.665 34.615 4.02 0.00 43.41 4.08
2614 6257 5.009410 GCATTCATCCTTGGGAGATAACAAG 59.991 44.000 0.00 0.00 42.77 3.16
2616 6259 3.523157 TCATCCTTGGGAGATAACAAGCA 59.477 43.478 0.00 0.00 42.01 3.91
2617 6260 3.634397 TCCTTGGGAGATAACAAGCAG 57.366 47.619 0.00 0.00 42.01 4.24
2621 6264 4.578105 CCTTGGGAGATAACAAGCAGAATC 59.422 45.833 0.00 0.00 42.01 2.52
2624 6267 4.054671 GGGAGATAACAAGCAGAATCTCG 58.945 47.826 13.99 0.00 43.41 4.04
2627 6270 5.233263 GGAGATAACAAGCAGAATCTCGAAC 59.767 44.000 13.99 0.00 43.41 3.95
2636 6279 3.543070 GCAGAATCTCGAACGAAATGAGC 60.543 47.826 0.00 0.00 0.00 4.26
2641 6284 2.731451 TCTCGAACGAAATGAGCAACAG 59.269 45.455 0.00 0.00 0.00 3.16
2655 6298 5.522456 TGAGCAACAGTGTGAATTCAAATC 58.478 37.500 10.35 3.84 0.00 2.17
2660 6303 6.143438 GCAACAGTGTGAATTCAAATCTCAAG 59.857 38.462 10.35 2.97 0.00 3.02
2667 6310 7.805071 GTGTGAATTCAAATCTCAAGTGGTTAG 59.195 37.037 10.35 0.00 0.00 2.34
2701 6345 4.019321 TGTTTGGAACCTCAGCTAGCTATT 60.019 41.667 18.86 9.58 0.00 1.73
2704 6348 5.179452 TGGAACCTCAGCTAGCTATTTTT 57.821 39.130 18.86 8.68 0.00 1.94
2775 6419 2.896745 ACTTCCGTTCAAACCGTACT 57.103 45.000 0.00 0.00 0.00 2.73
2777 6421 2.867975 ACTTCCGTTCAAACCGTACTTG 59.132 45.455 0.00 0.00 0.00 3.16
2779 6423 0.236449 CCGTTCAAACCGTACTTGCC 59.764 55.000 0.00 0.00 0.00 4.52
2817 6462 4.471904 TTGTCACTTGTCAAGACTGTCT 57.528 40.909 19.53 4.06 33.56 3.41
2818 6463 4.046938 TGTCACTTGTCAAGACTGTCTC 57.953 45.455 19.53 0.00 33.56 3.36
2865 6865 9.905713 ATCTATTTAACAGGCTCACTATTTTCA 57.094 29.630 0.00 0.00 0.00 2.69
2872 6872 5.821470 ACAGGCTCACTATTTTCATCTCATG 59.179 40.000 0.00 0.00 0.00 3.07
2874 6874 4.319333 GGCTCACTATTTTCATCTCATGCG 60.319 45.833 0.00 0.00 0.00 4.73
2891 6931 1.298563 CGTATGCATTTGGGCGCAG 60.299 57.895 10.83 0.00 42.37 5.18
2929 6969 3.093814 TGATGGAGCTGAAATGTTGCAT 58.906 40.909 0.00 0.00 32.69 3.96
2933 6973 2.490903 GGAGCTGAAATGTTGCATGAGT 59.509 45.455 0.00 0.00 0.00 3.41
2946 7099 4.694760 TGCATGAGTAATATCTGGCAGT 57.305 40.909 15.27 4.62 0.00 4.40
2969 7122 0.036105 TGTGAGTAGCATGCACCCTG 60.036 55.000 21.98 0.00 0.00 4.45
2973 7126 2.012673 GAGTAGCATGCACCCTGAAAG 58.987 52.381 21.98 0.00 0.00 2.62
2982 7135 2.039348 TGCACCCTGAAAGTACTAACCC 59.961 50.000 0.00 0.00 0.00 4.11
2983 7136 2.039348 GCACCCTGAAAGTACTAACCCA 59.961 50.000 0.00 0.00 0.00 4.51
2986 7139 4.941873 CACCCTGAAAGTACTAACCCATTC 59.058 45.833 0.00 0.00 0.00 2.67
2993 7146 6.759827 TGAAAGTACTAACCCATTCGCTATTC 59.240 38.462 0.00 0.00 0.00 1.75
2994 7147 4.868067 AGTACTAACCCATTCGCTATTCG 58.132 43.478 0.00 0.00 40.15 3.34
3007 7160 2.348872 CGCTATTCGGATTCACACATGC 60.349 50.000 0.00 0.00 33.78 4.06
3013 7166 6.791887 ATTCGGATTCACACATGCTAATAG 57.208 37.500 0.00 0.00 0.00 1.73
3043 7197 3.440127 ACAAGTAAAATGGGGGTGATGG 58.560 45.455 0.00 0.00 0.00 3.51
3056 7210 4.653801 GGGGGTGATGGCAAGTAAATAATT 59.346 41.667 0.00 0.00 0.00 1.40
3078 7290 6.913873 TTACTTCTTTTAGCTGTTTCGTGT 57.086 33.333 0.00 0.00 0.00 4.49
3091 7303 5.220303 GCTGTTTCGTGTTCTATAAGCTGAG 60.220 44.000 0.00 0.00 0.00 3.35
3099 7311 6.865726 CGTGTTCTATAAGCTGAGAGCAATAT 59.134 38.462 10.40 0.00 45.56 1.28
3100 7312 8.023706 CGTGTTCTATAAGCTGAGAGCAATATA 58.976 37.037 10.40 0.82 45.56 0.86
3101 7313 9.134734 GTGTTCTATAAGCTGAGAGCAATATAC 57.865 37.037 10.40 0.00 45.56 1.47
3139 7352 8.459521 TTTTATTATTTCAAACATCAGCCACG 57.540 30.769 0.00 0.00 0.00 4.94
3167 7380 2.758130 ACTCCACCACCCAACAAATTT 58.242 42.857 0.00 0.00 0.00 1.82
3173 7386 2.559440 CCACCCAACAAATTTGTGTGG 58.441 47.619 29.87 29.87 42.49 4.17
3174 7387 3.533606 CACCCAACAAATTTGTGTGGA 57.466 42.857 32.11 0.00 41.31 4.02
3187 7403 0.315251 GTGTGGAAAAGGCTGAAGGC 59.685 55.000 0.00 0.00 41.43 4.35
3210 7426 1.154413 CGCTGTTGTTGTCATCGGC 60.154 57.895 0.00 0.00 40.35 5.54
3215 7431 1.196581 TGTTGTTGTCATCGGCATTCG 59.803 47.619 0.00 0.00 40.90 3.34
3238 7469 8.046294 TCGTAGGAGATATAGCTCATCTTTTC 57.954 38.462 19.13 0.65 36.62 2.29
3241 7472 9.638239 GTAGGAGATATAGCTCATCTTTTCTTG 57.362 37.037 19.13 0.00 36.62 3.02
3242 7473 8.489676 AGGAGATATAGCTCATCTTTTCTTGA 57.510 34.615 19.13 0.00 36.62 3.02
3248 7479 3.526841 AGCTCATCTTTTCTTGAGGGGAT 59.473 43.478 2.48 0.00 39.79 3.85
3252 7483 5.945310 TCATCTTTTCTTGAGGGGATATGG 58.055 41.667 0.00 0.00 0.00 2.74
3253 7484 5.433051 TCATCTTTTCTTGAGGGGATATGGT 59.567 40.000 0.00 0.00 0.00 3.55
3255 7486 6.248569 TCTTTTCTTGAGGGGATATGGTAC 57.751 41.667 0.00 0.00 0.00 3.34
3286 7517 6.846350 ACAACACTTCTTAATATTGCTGAGC 58.154 36.000 0.00 0.00 0.00 4.26
3296 7527 8.101419 TCTTAATATTGCTGAGCTGATCATGAT 58.899 33.333 8.25 8.25 37.28 2.45
3305 7536 6.238676 GCTGAGCTGATCATGATTTTGTACAT 60.239 38.462 10.14 0.00 37.28 2.29
3348 8117 0.951040 AGTTGCGTAGGTGCTTCTGC 60.951 55.000 0.00 0.00 40.20 4.26
3351 8120 0.173481 TGCGTAGGTGCTTCTGCTAG 59.827 55.000 0.00 0.00 40.48 3.42
3357 8126 4.631813 CGTAGGTGCTTCTGCTAGATTTTT 59.368 41.667 0.00 0.00 40.48 1.94
3358 8127 5.810587 CGTAGGTGCTTCTGCTAGATTTTTA 59.189 40.000 0.00 0.00 40.48 1.52
3359 8128 6.480320 CGTAGGTGCTTCTGCTAGATTTTTAT 59.520 38.462 0.00 0.00 40.48 1.40
3360 8129 6.934048 AGGTGCTTCTGCTAGATTTTTATC 57.066 37.500 0.00 0.00 40.48 1.75
3363 8132 7.613411 AGGTGCTTCTGCTAGATTTTTATCTTT 59.387 33.333 0.00 0.00 40.48 2.52
3393 8162 9.245962 CTGTATTGGGTTACTTAGAGATTAACG 57.754 37.037 0.00 0.00 0.00 3.18
3412 8181 0.961753 GCTTTTGTGTTCTCCAGGGG 59.038 55.000 0.00 0.00 0.00 4.79
3413 8182 1.478654 GCTTTTGTGTTCTCCAGGGGA 60.479 52.381 0.00 0.00 0.00 4.81
3422 8191 1.911471 CTCCAGGGGAGGAAAGAGC 59.089 63.158 4.31 0.00 45.43 4.09
3423 8192 0.620121 CTCCAGGGGAGGAAAGAGCT 60.620 60.000 4.31 0.00 45.43 4.09
3427 8196 1.077858 GGGGAGGAAAGAGCTGCTG 60.078 63.158 7.01 0.00 0.00 4.41
3441 8210 2.003301 GCTGCTGCTGTACTACTTTCC 58.997 52.381 8.53 0.00 36.03 3.13
3443 8212 3.257393 CTGCTGCTGTACTACTTTCCTG 58.743 50.000 0.00 0.00 0.00 3.86
3444 8213 2.897326 TGCTGCTGTACTACTTTCCTGA 59.103 45.455 0.00 0.00 0.00 3.86
3445 8214 3.515502 TGCTGCTGTACTACTTTCCTGAT 59.484 43.478 0.00 0.00 0.00 2.90
3454 8223 9.522804 CTGTACTACTTTCCTGATAATGAGTTC 57.477 37.037 0.00 0.00 0.00 3.01
3455 8224 9.031537 TGTACTACTTTCCTGATAATGAGTTCA 57.968 33.333 0.00 0.00 0.00 3.18
3462 8231 4.100035 TCCTGATAATGAGTTCATCGTGCT 59.900 41.667 0.00 0.00 35.10 4.40
3463 8232 4.813161 CCTGATAATGAGTTCATCGTGCTT 59.187 41.667 0.00 0.00 35.10 3.91
3468 8237 5.633830 AATGAGTTCATCGTGCTTTCAAT 57.366 34.783 0.00 0.00 35.10 2.57
3480 8249 1.522668 CTTTCAATGTGGTCGGCAGA 58.477 50.000 0.00 0.00 0.00 4.26
3481 8250 1.466167 CTTTCAATGTGGTCGGCAGAG 59.534 52.381 0.00 0.00 0.00 3.35
3482 8251 0.396435 TTCAATGTGGTCGGCAGAGT 59.604 50.000 0.00 0.00 0.00 3.24
3492 8261 5.105269 TGTGGTCGGCAGAGTTTATGTTATA 60.105 40.000 0.00 0.00 0.00 0.98
3498 8267 6.929049 TCGGCAGAGTTTATGTTATATGAAGG 59.071 38.462 0.00 0.00 0.00 3.46
3501 8270 8.560374 GGCAGAGTTTATGTTATATGAAGGAAC 58.440 37.037 0.00 0.00 0.00 3.62
3519 8288 6.442513 AGGAACTTTACTAAATGCATCTGC 57.557 37.500 0.00 0.00 37.02 4.26
3520 8289 5.358160 AGGAACTTTACTAAATGCATCTGCC 59.642 40.000 0.00 0.00 35.62 4.85
3521 8290 5.358160 GGAACTTTACTAAATGCATCTGCCT 59.642 40.000 0.00 0.00 41.18 4.75
3522 8291 6.127619 GGAACTTTACTAAATGCATCTGCCTT 60.128 38.462 0.00 0.00 41.18 4.35
3523 8292 7.067008 GGAACTTTACTAAATGCATCTGCCTTA 59.933 37.037 0.00 0.00 41.18 2.69
3525 8294 7.112779 ACTTTACTAAATGCATCTGCCTTAGT 58.887 34.615 19.44 19.44 44.14 2.24
3526 8295 7.281100 ACTTTACTAAATGCATCTGCCTTAGTC 59.719 37.037 19.19 0.00 42.54 2.59
3568 8337 5.835113 GCAAGATGCTTTTGAATACCCTA 57.165 39.130 0.00 0.00 40.96 3.53
3569 8338 5.825507 GCAAGATGCTTTTGAATACCCTAG 58.174 41.667 0.00 0.00 40.96 3.02
3570 8339 5.734503 GCAAGATGCTTTTGAATACCCTAGC 60.735 44.000 0.00 0.00 40.96 3.42
3571 8340 5.379706 AGATGCTTTTGAATACCCTAGCT 57.620 39.130 0.00 0.00 0.00 3.32
3572 8341 6.500589 AGATGCTTTTGAATACCCTAGCTA 57.499 37.500 0.00 0.00 0.00 3.32
3594 8363 9.614792 AGCTAGTATTATTTCAAGTCGGATTTT 57.385 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.354387 TGACCATAAACCTTGTCCCCTTTA 59.646 41.667 0.00 0.00 0.00 1.85
51 52 5.297547 GTCGATTAGGCATTTCTATGACCA 58.702 41.667 0.00 0.00 40.99 4.02
55 56 6.925211 TCTAGGTCGATTAGGCATTTCTATG 58.075 40.000 0.00 0.00 34.76 2.23
57 58 5.477291 CCTCTAGGTCGATTAGGCATTTCTA 59.523 44.000 0.00 0.00 0.00 2.10
91 92 1.206610 GGCATGCTCAAGACTCTCTGA 59.793 52.381 18.92 0.00 0.00 3.27
102 103 1.375908 GACTTGACGGGCATGCTCA 60.376 57.895 19.64 11.33 0.00 4.26
142 150 3.938963 GGTTGAATTCCATACGAGCTTGA 59.061 43.478 8.31 0.00 0.00 3.02
155 163 1.468914 GGTCAGAAGGCGGTTGAATTC 59.531 52.381 0.00 0.00 0.00 2.17
258 267 0.609957 TTCTACGACCTCTCCCGCAA 60.610 55.000 0.00 0.00 0.00 4.85
284 293 5.048504 AGTTGAGGTTAGCATTGTGAATGTG 60.049 40.000 0.00 0.00 41.01 3.21
296 305 3.403038 TGAAGCTTCAGTTGAGGTTAGC 58.597 45.455 25.16 0.00 32.50 3.09
299 308 4.090761 TCATGAAGCTTCAGTTGAGGTT 57.909 40.909 31.14 11.79 41.08 3.50
330 339 1.134521 CCGACATCCTTCGAAATCCCA 60.135 52.381 0.00 0.00 41.78 4.37
333 342 3.797256 CAGTACCGACATCCTTCGAAATC 59.203 47.826 0.00 0.00 41.78 2.17
340 349 1.278127 CCCAACAGTACCGACATCCTT 59.722 52.381 0.00 0.00 0.00 3.36
424 434 3.706086 AGGTTTCCTGCAACAATGACTTT 59.294 39.130 0.00 0.00 29.57 2.66
448 458 2.363680 CGCTCAGAACATAGGAGGACAT 59.636 50.000 0.00 0.00 0.00 3.06
474 484 3.643978 GCGCCCATCATCGCTGAC 61.644 66.667 0.00 0.00 46.92 3.51
480 490 1.789078 GACCACATGCGCCCATCATC 61.789 60.000 4.18 0.00 0.00 2.92
489 499 1.781555 GTCACGAAGACCACATGCG 59.218 57.895 0.00 0.00 41.56 4.73
507 517 2.359975 GGTGCCTCCGGGAAGTTG 60.360 66.667 0.00 0.00 33.58 3.16
509 519 3.637273 GTGGTGCCTCCGGGAAGT 61.637 66.667 0.00 0.00 39.52 3.01
521 531 2.834549 AGGATAAGTCTCCACTGTGGTG 59.165 50.000 25.15 22.50 39.03 4.17
523 533 2.099921 CGAGGATAAGTCTCCACTGTGG 59.900 54.545 20.86 20.86 37.81 4.17
524 534 3.017442 TCGAGGATAAGTCTCCACTGTG 58.983 50.000 0.00 0.00 37.81 3.66
525 535 3.367646 TCGAGGATAAGTCTCCACTGT 57.632 47.619 0.00 0.00 37.81 3.55
559 569 2.360801 CGTTGTCAAACCCCTCAACAAT 59.639 45.455 0.00 0.00 39.72 2.71
562 572 0.030235 GCGTTGTCAAACCCCTCAAC 59.970 55.000 0.00 0.00 37.42 3.18
593 603 0.318107 GCACATGGCAGTGTTGTGAC 60.318 55.000 20.03 9.47 42.59 3.67
604 614 4.101448 ACGAGGGGAGCACATGGC 62.101 66.667 0.00 0.00 45.30 4.40
616 626 1.742880 CCACATGACCAGCACGAGG 60.743 63.158 0.00 0.00 0.00 4.63
655 665 0.695924 TCGCCAAAAGGGGATGAAGA 59.304 50.000 0.00 0.00 37.04 2.87
661 671 1.074248 GGAGTTCGCCAAAAGGGGA 59.926 57.895 0.00 0.00 37.04 4.81
681 691 1.656652 AGAAGGATGTCGATTTGCGG 58.343 50.000 0.00 0.00 41.33 5.69
685 695 6.821388 AGTATGCTTAGAAGGATGTCGATTT 58.179 36.000 6.54 0.00 37.65 2.17
689 699 4.038042 TGGAGTATGCTTAGAAGGATGTCG 59.962 45.833 6.54 0.00 37.65 4.35
691 701 5.957771 TTGGAGTATGCTTAGAAGGATGT 57.042 39.130 6.54 0.00 37.65 3.06
707 2448 3.181434 TGGCTAGGTGAACATTTTGGAGT 60.181 43.478 0.00 0.00 0.00 3.85
730 2471 0.897863 CAACGGGGGCTCCAAAATGA 60.898 55.000 4.16 0.00 34.36 2.57
745 2486 3.338839 CAAGTACGACACAACAACAACG 58.661 45.455 0.00 0.00 0.00 4.10
776 2517 0.609131 AGAATGGTCGTTGCCCAAGG 60.609 55.000 0.00 0.00 35.14 3.61
807 2548 3.885484 AGCTTTCTTCACGTTGATGTG 57.115 42.857 0.00 0.00 41.28 3.21
844 2585 9.750125 GATTTTCTCACCAGTTGTTAATTCTTT 57.250 29.630 0.00 0.00 0.00 2.52
856 2597 0.034896 ACGGCGATTTTCTCACCAGT 59.965 50.000 16.62 0.00 0.00 4.00
952 2694 4.379243 CCCGTCCGTCTGCTGCTT 62.379 66.667 0.00 0.00 0.00 3.91
955 2697 4.436998 GGTCCCGTCCGTCTGCTG 62.437 72.222 0.00 0.00 0.00 4.41
956 2698 4.988716 TGGTCCCGTCCGTCTGCT 62.989 66.667 0.00 0.00 0.00 4.24
957 2699 2.798148 ATTTGGTCCCGTCCGTCTGC 62.798 60.000 0.00 0.00 0.00 4.26
958 2700 0.739813 GATTTGGTCCCGTCCGTCTG 60.740 60.000 0.00 0.00 0.00 3.51
959 2701 1.595357 GATTTGGTCCCGTCCGTCT 59.405 57.895 0.00 0.00 0.00 4.18
960 2702 1.808390 CGATTTGGTCCCGTCCGTC 60.808 63.158 0.00 0.00 0.00 4.79
961 2703 2.263540 CGATTTGGTCCCGTCCGT 59.736 61.111 0.00 0.00 0.00 4.69
962 2704 1.808390 GTCGATTTGGTCCCGTCCG 60.808 63.158 0.00 0.00 0.00 4.79
963 2705 1.808390 CGTCGATTTGGTCCCGTCC 60.808 63.158 0.00 0.00 0.00 4.79
964 2706 2.450345 GCGTCGATTTGGTCCCGTC 61.450 63.158 0.00 0.00 0.00 4.79
965 2707 2.433664 GCGTCGATTTGGTCCCGT 60.434 61.111 0.00 0.00 0.00 5.28
966 2708 3.192922 GGCGTCGATTTGGTCCCG 61.193 66.667 0.00 0.00 0.00 5.14
967 2709 2.046700 TGGCGTCGATTTGGTCCC 60.047 61.111 0.00 0.00 0.00 4.46
968 2710 1.359459 GAGTGGCGTCGATTTGGTCC 61.359 60.000 0.00 0.00 0.00 4.46
969 2711 1.359459 GGAGTGGCGTCGATTTGGTC 61.359 60.000 0.00 0.00 0.00 4.02
970 2712 1.375523 GGAGTGGCGTCGATTTGGT 60.376 57.895 0.00 0.00 0.00 3.67
971 2713 2.106683 GGGAGTGGCGTCGATTTGG 61.107 63.158 0.00 0.00 0.00 3.28
972 2714 2.106683 GGGGAGTGGCGTCGATTTG 61.107 63.158 0.00 0.00 0.00 2.32
973 2715 2.267961 GGGGAGTGGCGTCGATTT 59.732 61.111 0.00 0.00 0.00 2.17
974 2716 3.000819 TGGGGAGTGGCGTCGATT 61.001 61.111 0.00 0.00 0.00 3.34
975 2717 3.771160 GTGGGGAGTGGCGTCGAT 61.771 66.667 0.00 0.00 0.00 3.59
976 2718 4.988716 AGTGGGGAGTGGCGTCGA 62.989 66.667 0.00 0.00 0.00 4.20
977 2719 4.436998 GAGTGGGGAGTGGCGTCG 62.437 72.222 0.00 0.00 0.00 5.12
978 2720 2.579684 GATGAGTGGGGAGTGGCGTC 62.580 65.000 0.00 0.00 0.00 5.19
979 2721 2.607750 ATGAGTGGGGAGTGGCGT 60.608 61.111 0.00 0.00 0.00 5.68
980 2722 2.187946 GATGAGTGGGGAGTGGCG 59.812 66.667 0.00 0.00 0.00 5.69
981 2723 1.524482 GAGATGAGTGGGGAGTGGC 59.476 63.158 0.00 0.00 0.00 5.01
982 2724 0.326048 AGGAGATGAGTGGGGAGTGG 60.326 60.000 0.00 0.00 0.00 4.00
983 2725 1.118838 GAGGAGATGAGTGGGGAGTG 58.881 60.000 0.00 0.00 0.00 3.51
984 2726 1.014804 AGAGGAGATGAGTGGGGAGT 58.985 55.000 0.00 0.00 0.00 3.85
985 2727 1.412079 CAGAGGAGATGAGTGGGGAG 58.588 60.000 0.00 0.00 0.00 4.30
986 2728 0.031716 CCAGAGGAGATGAGTGGGGA 60.032 60.000 0.00 0.00 0.00 4.81
987 2729 1.694133 GCCAGAGGAGATGAGTGGGG 61.694 65.000 0.00 0.00 0.00 4.96
988 2730 1.694133 GGCCAGAGGAGATGAGTGGG 61.694 65.000 0.00 0.00 0.00 4.61
989 2731 0.979709 TGGCCAGAGGAGATGAGTGG 60.980 60.000 0.00 0.00 0.00 4.00
990 2732 0.464870 CTGGCCAGAGGAGATGAGTG 59.535 60.000 29.88 0.00 0.00 3.51
991 2733 1.336632 GCTGGCCAGAGGAGATGAGT 61.337 60.000 37.21 0.00 0.00 3.41
992 2734 1.049855 AGCTGGCCAGAGGAGATGAG 61.050 60.000 37.21 6.97 0.00 2.90
993 2735 1.002662 AGCTGGCCAGAGGAGATGA 59.997 57.895 37.21 0.00 0.00 2.92
994 2736 1.446791 GAGCTGGCCAGAGGAGATG 59.553 63.158 37.21 8.65 0.00 2.90
995 2737 2.132996 CGAGCTGGCCAGAGGAGAT 61.133 63.158 37.21 8.47 0.00 2.75
996 2738 2.757508 CGAGCTGGCCAGAGGAGA 60.758 66.667 37.21 0.00 0.00 3.71
997 2739 4.527583 GCGAGCTGGCCAGAGGAG 62.528 72.222 37.21 22.73 0.00 3.69
998 2740 3.662117 TAGCGAGCTGGCCAGAGGA 62.662 63.158 37.21 11.36 0.00 3.71
999 2741 3.149338 CTAGCGAGCTGGCCAGAGG 62.149 68.421 37.21 23.29 0.00 3.69
1000 2742 2.416678 CTAGCGAGCTGGCCAGAG 59.583 66.667 37.21 25.20 0.00 3.35
1001 2743 3.150335 CCTAGCGAGCTGGCCAGA 61.150 66.667 37.21 13.42 0.00 3.86
1002 2744 3.438017 GACCTAGCGAGCTGGCCAG 62.438 68.421 29.34 29.34 0.00 4.85
1003 2745 2.567664 TAGACCTAGCGAGCTGGCCA 62.568 60.000 17.86 4.71 0.00 5.36
1004 2746 1.801309 CTAGACCTAGCGAGCTGGCC 61.801 65.000 17.86 0.00 0.00 5.36
1005 2747 1.657556 CTAGACCTAGCGAGCTGGC 59.342 63.158 13.51 13.51 0.00 4.85
1006 2748 0.466555 ACCTAGACCTAGCGAGCTGG 60.467 60.000 7.99 4.51 31.95 4.85
1007 2749 0.948678 GACCTAGACCTAGCGAGCTG 59.051 60.000 7.99 0.00 31.95 4.24
1008 2750 0.841289 AGACCTAGACCTAGCGAGCT 59.159 55.000 2.25 2.25 31.95 4.09
1009 2751 1.335496 CAAGACCTAGACCTAGCGAGC 59.665 57.143 0.00 0.00 31.95 5.03
1010 2752 1.950909 CCAAGACCTAGACCTAGCGAG 59.049 57.143 0.00 0.00 31.95 5.03
1011 2753 2.022754 GCCAAGACCTAGACCTAGCGA 61.023 57.143 0.00 0.00 31.95 4.93
1012 2754 0.386113 GCCAAGACCTAGACCTAGCG 59.614 60.000 0.00 0.00 31.95 4.26
1013 2755 0.386113 CGCCAAGACCTAGACCTAGC 59.614 60.000 0.00 0.00 31.95 3.42
1014 2756 0.386113 GCGCCAAGACCTAGACCTAG 59.614 60.000 0.00 0.00 0.00 3.02
1015 2757 1.041447 GGCGCCAAGACCTAGACCTA 61.041 60.000 24.80 0.00 0.00 3.08
1016 2758 2.359967 GGCGCCAAGACCTAGACCT 61.360 63.158 24.80 0.00 0.00 3.85
1017 2759 2.187163 GGCGCCAAGACCTAGACC 59.813 66.667 24.80 0.00 0.00 3.85
1018 2760 2.202756 CGGCGCCAAGACCTAGAC 60.203 66.667 28.98 0.00 0.00 2.59
1019 2761 4.143333 GCGGCGCCAAGACCTAGA 62.143 66.667 28.98 0.00 0.00 2.43
1085 2838 2.682136 TCGCGTGGATCTGGGGAA 60.682 61.111 5.77 0.00 0.00 3.97
1195 2963 0.252057 TGGATCTGTGGACGGAGGAA 60.252 55.000 0.00 0.00 34.27 3.36
1389 3175 1.448497 GAACCTTGGGTCGGTGACA 59.552 57.895 0.00 0.00 33.12 3.58
1461 4239 0.893727 GCAAACCATCCCCGTCTTGT 60.894 55.000 0.00 0.00 0.00 3.16
1466 4244 0.893727 GAACAGCAAACCATCCCCGT 60.894 55.000 0.00 0.00 0.00 5.28
1477 4261 1.112315 ATGGCGGGTTTGAACAGCAA 61.112 50.000 12.97 5.02 36.33 3.91
1479 4263 1.080569 CATGGCGGGTTTGAACAGC 60.081 57.895 5.41 5.41 34.70 4.40
1480 4264 1.586028 CCATGGCGGGTTTGAACAG 59.414 57.895 0.00 0.00 0.00 3.16
1499 4283 3.613689 GGATACGGTCGGGAGGGC 61.614 72.222 0.00 0.00 0.00 5.19
1519 4306 2.357517 CAGGTTGAAGCGCCGACT 60.358 61.111 2.29 0.00 0.00 4.18
1653 4489 0.595095 GAAAGGGCACACAGAGCTTG 59.405 55.000 0.00 0.00 0.00 4.01
1787 4689 1.277557 GTGGACCTCTGATGCTCAAGT 59.722 52.381 0.00 0.00 0.00 3.16
1907 4838 8.730680 AGTAAAGTGCATTACCAATAAGTGAAG 58.269 33.333 6.59 0.00 36.62 3.02
1964 4911 1.622811 TGTGCCCATCCAAATCAAACC 59.377 47.619 0.00 0.00 0.00 3.27
2406 5952 6.142259 AGGTTACTCCTACGATATGAGGAT 57.858 41.667 0.00 0.00 46.10 3.24
2438 6078 5.953183 TCAAGCATCCATGTACAAAACATC 58.047 37.500 0.00 0.00 46.15 3.06
2466 6109 9.212641 CTGTTAGTGCATCTATATGTAGCAAAT 57.787 33.333 0.00 0.00 36.91 2.32
2474 6117 4.560128 ACGGCTGTTAGTGCATCTATATG 58.440 43.478 0.00 0.00 36.09 1.78
2478 6121 1.136305 GGACGGCTGTTAGTGCATCTA 59.864 52.381 0.00 0.00 0.00 1.98
2480 6123 0.108138 AGGACGGCTGTTAGTGCATC 60.108 55.000 0.00 0.00 0.00 3.91
2481 6124 0.391661 CAGGACGGCTGTTAGTGCAT 60.392 55.000 0.00 0.00 0.00 3.96
2485 6128 3.259876 TGATAAACAGGACGGCTGTTAGT 59.740 43.478 0.00 0.00 43.33 2.24
2486 6129 3.857052 TGATAAACAGGACGGCTGTTAG 58.143 45.455 0.00 0.00 43.33 2.34
2487 6130 3.965379 TGATAAACAGGACGGCTGTTA 57.035 42.857 0.00 0.00 43.33 2.41
2488 6131 2.851263 TGATAAACAGGACGGCTGTT 57.149 45.000 0.00 0.00 45.70 3.16
2490 6133 2.614057 GGAATGATAAACAGGACGGCTG 59.386 50.000 0.00 0.00 0.00 4.85
2492 6135 2.639065 TGGAATGATAAACAGGACGGC 58.361 47.619 0.00 0.00 0.00 5.68
2493 6136 7.386851 ACTATATGGAATGATAAACAGGACGG 58.613 38.462 0.00 0.00 0.00 4.79
2494 6137 8.712363 CAACTATATGGAATGATAAACAGGACG 58.288 37.037 0.00 0.00 0.00 4.79
2495 6138 9.561069 ACAACTATATGGAATGATAAACAGGAC 57.439 33.333 0.00 0.00 0.00 3.85
2497 6140 9.784531 AGACAACTATATGGAATGATAAACAGG 57.215 33.333 0.00 0.00 0.00 4.00
2499 6142 9.778741 GGAGACAACTATATGGAATGATAAACA 57.221 33.333 0.00 0.00 0.00 2.83
2500 6143 9.778741 TGGAGACAACTATATGGAATGATAAAC 57.221 33.333 0.00 0.00 37.44 2.01
2504 6147 7.071698 ACAGTGGAGACAACTATATGGAATGAT 59.928 37.037 0.00 0.00 46.06 2.45
2522 6165 4.576216 ATCTAGCATACGAACAGTGGAG 57.424 45.455 0.00 0.00 0.00 3.86
2523 6166 4.885325 TGTATCTAGCATACGAACAGTGGA 59.115 41.667 0.00 0.00 0.00 4.02
2524 6167 4.976731 GTGTATCTAGCATACGAACAGTGG 59.023 45.833 0.00 0.00 0.00 4.00
2525 6168 5.578776 TGTGTATCTAGCATACGAACAGTG 58.421 41.667 0.00 0.00 0.00 3.66
2526 6169 5.830000 TGTGTATCTAGCATACGAACAGT 57.170 39.130 0.00 0.00 0.00 3.55
2527 6170 5.174035 GCTTGTGTATCTAGCATACGAACAG 59.826 44.000 0.00 3.91 42.68 3.16
2528 6171 5.041287 GCTTGTGTATCTAGCATACGAACA 58.959 41.667 0.00 5.37 42.68 3.18
2530 6173 5.515797 AGCTTGTGTATCTAGCATACGAA 57.484 39.130 0.00 3.89 44.84 3.85
2532 6175 7.485277 GGTATAAGCTTGTGTATCTAGCATACG 59.515 40.741 9.86 0.00 44.84 3.06
2534 6177 7.674348 AGGGTATAAGCTTGTGTATCTAGCATA 59.326 37.037 9.86 0.00 44.84 3.14
2535 6178 6.498651 AGGGTATAAGCTTGTGTATCTAGCAT 59.501 38.462 9.86 0.00 44.84 3.79
2536 6179 5.839063 AGGGTATAAGCTTGTGTATCTAGCA 59.161 40.000 9.86 0.00 44.84 3.49
2537 6180 6.347859 AGGGTATAAGCTTGTGTATCTAGC 57.652 41.667 9.86 0.00 43.27 3.42
2543 6186 8.962679 CCAAAAATAAGGGTATAAGCTTGTGTA 58.037 33.333 9.86 0.00 0.00 2.90
2544 6187 7.453439 ACCAAAAATAAGGGTATAAGCTTGTGT 59.547 33.333 9.86 0.00 31.89 3.72
2545 6188 7.759433 CACCAAAAATAAGGGTATAAGCTTGTG 59.241 37.037 9.86 0.00 32.55 3.33
2546 6189 7.453439 ACACCAAAAATAAGGGTATAAGCTTGT 59.547 33.333 9.86 4.77 32.55 3.16
2547 6190 7.836842 ACACCAAAAATAAGGGTATAAGCTTG 58.163 34.615 9.86 0.00 32.55 4.01
2548 6191 8.430573 AACACCAAAAATAAGGGTATAAGCTT 57.569 30.769 3.48 3.48 32.55 3.74
2549 6192 9.709387 ATAACACCAAAAATAAGGGTATAAGCT 57.291 29.630 0.00 0.00 32.55 3.74
2550 6193 9.961265 GATAACACCAAAAATAAGGGTATAAGC 57.039 33.333 0.00 0.00 32.55 3.09
2554 6197 9.185680 GAGTGATAACACCAAAAATAAGGGTAT 57.814 33.333 0.00 0.00 46.99 2.73
2555 6198 8.164733 TGAGTGATAACACCAAAAATAAGGGTA 58.835 33.333 0.00 0.00 46.99 3.69
2556 6199 7.007723 TGAGTGATAACACCAAAAATAAGGGT 58.992 34.615 0.00 0.00 46.99 4.34
2557 6200 7.461182 TGAGTGATAACACCAAAAATAAGGG 57.539 36.000 0.00 0.00 46.99 3.95
2565 6208 8.673711 GCAACTATATTGAGTGATAACACCAAA 58.326 33.333 9.77 2.12 46.99 3.28
2568 6211 7.786178 TGCAACTATATTGAGTGATAACACC 57.214 36.000 0.00 0.00 46.99 4.16
2578 6221 7.309012 CCCAAGGATGAATGCAACTATATTGAG 60.309 40.741 0.00 0.00 0.00 3.02
2591 6234 5.009410 GCTTGTTATCTCCCAAGGATGAATG 59.991 44.000 0.00 0.00 38.76 2.67
2592 6235 5.136105 GCTTGTTATCTCCCAAGGATGAAT 58.864 41.667 0.00 0.00 38.76 2.57
2614 6257 3.543070 GCTCATTTCGTTCGAGATTCTGC 60.543 47.826 0.00 0.00 0.00 4.26
2616 6259 3.849911 TGCTCATTTCGTTCGAGATTCT 58.150 40.909 0.00 0.00 0.00 2.40
2617 6260 4.143115 TGTTGCTCATTTCGTTCGAGATTC 60.143 41.667 0.00 0.00 0.00 2.52
2621 6264 2.476619 ACTGTTGCTCATTTCGTTCGAG 59.523 45.455 0.00 0.00 0.00 4.04
2624 6267 3.002246 TCACACTGTTGCTCATTTCGTTC 59.998 43.478 0.00 0.00 0.00 3.95
2627 6270 3.607422 TTCACACTGTTGCTCATTTCG 57.393 42.857 0.00 0.00 0.00 3.46
2636 6279 7.166970 CACTTGAGATTTGAATTCACACTGTTG 59.833 37.037 7.89 0.00 0.00 3.33
2641 6284 6.076981 ACCACTTGAGATTTGAATTCACAC 57.923 37.500 7.89 2.76 0.00 3.82
2655 6298 2.673368 GCCGAATGACTAACCACTTGAG 59.327 50.000 0.00 0.00 0.00 3.02
2660 6303 2.356135 ACATGCCGAATGACTAACCAC 58.644 47.619 5.22 0.00 38.72 4.16
2667 6310 2.595386 GTTCCAAACATGCCGAATGAC 58.405 47.619 5.22 0.00 38.72 3.06
2775 6419 5.766174 ACAAAGAAAACTACTATTCCGGCAA 59.234 36.000 0.00 0.00 0.00 4.52
2777 6421 5.410439 TGACAAAGAAAACTACTATTCCGGC 59.590 40.000 0.00 0.00 0.00 6.13
2779 6423 7.653767 AGTGACAAAGAAAACTACTATTCCG 57.346 36.000 0.00 0.00 0.00 4.30
2845 6842 7.394016 TGAGATGAAAATAGTGAGCCTGTTAA 58.606 34.615 0.00 0.00 0.00 2.01
2852 6849 4.272018 ACGCATGAGATGAAAATAGTGAGC 59.728 41.667 2.50 0.00 0.00 4.26
2872 6872 2.655044 GCGCCCAAATGCATACGC 60.655 61.111 0.00 7.41 39.49 4.42
2874 6874 1.589727 GCTGCGCCCAAATGCATAC 60.590 57.895 4.18 0.00 40.89 2.39
2891 6931 1.026182 TCACATCCACGAGCAATGGC 61.026 55.000 0.00 0.00 37.13 4.40
2929 6969 6.051074 CACATTGACTGCCAGATATTACTCA 58.949 40.000 0.00 0.00 0.00 3.41
2933 6973 6.239217 ACTCACATTGACTGCCAGATATTA 57.761 37.500 0.00 0.00 0.00 0.98
2946 7099 2.358957 GGTGCATGCTACTCACATTGA 58.641 47.619 20.33 0.00 32.69 2.57
2969 7122 6.074463 CGAATAGCGAATGGGTTAGTACTTTC 60.074 42.308 0.00 0.00 44.57 2.62
2973 7126 3.985925 CCGAATAGCGAATGGGTTAGTAC 59.014 47.826 0.00 0.00 44.57 2.73
2982 7135 3.555547 TGTGTGAATCCGAATAGCGAATG 59.444 43.478 0.00 0.00 44.57 2.67
2983 7136 3.792401 TGTGTGAATCCGAATAGCGAAT 58.208 40.909 0.00 0.00 44.57 3.34
2986 7139 2.348872 GCATGTGTGAATCCGAATAGCG 60.349 50.000 0.00 0.00 40.47 4.26
2993 7146 4.395581 GCTATTAGCATGTGTGAATCCG 57.604 45.455 10.83 0.00 41.89 4.18
3013 7166 4.749598 CCCCATTTTACTTGTTTTCTGTGC 59.250 41.667 0.00 0.00 0.00 4.57
3016 7169 5.069781 TCACCCCCATTTTACTTGTTTTCTG 59.930 40.000 0.00 0.00 0.00 3.02
3026 7180 1.859302 TGCCATCACCCCCATTTTAC 58.141 50.000 0.00 0.00 0.00 2.01
3056 7210 6.759827 AGAACACGAAACAGCTAAAAGAAGTA 59.240 34.615 0.00 0.00 0.00 2.24
3109 7321 8.881743 GCTGATGTTTGAAATAATAAAATGGCA 58.118 29.630 0.00 0.00 0.00 4.92
3139 7352 1.202879 TGGGTGGTGGAGTTGAATGAC 60.203 52.381 0.00 0.00 0.00 3.06
3167 7380 1.691196 CCTTCAGCCTTTTCCACACA 58.309 50.000 0.00 0.00 0.00 3.72
3173 7386 2.666026 CGAAAAGCCTTCAGCCTTTTC 58.334 47.619 11.35 11.35 45.47 2.29
3174 7387 1.269778 GCGAAAAGCCTTCAGCCTTTT 60.270 47.619 0.00 0.00 45.47 2.27
3192 7408 1.154413 GCCGATGACAACAACAGCG 60.154 57.895 0.00 0.00 44.77 5.18
3193 7409 0.523072 ATGCCGATGACAACAACAGC 59.477 50.000 0.00 0.00 0.00 4.40
3210 7426 7.566760 AGATGAGCTATATCTCCTACGAATG 57.433 40.000 7.05 0.00 29.05 2.67
3215 7431 9.638239 CAAGAAAAGATGAGCTATATCTCCTAC 57.362 37.037 12.04 6.27 33.92 3.18
3238 7469 2.705658 TGCTGTACCATATCCCCTCAAG 59.294 50.000 0.00 0.00 0.00 3.02
3241 7472 2.330216 ACTGCTGTACCATATCCCCTC 58.670 52.381 0.00 0.00 0.00 4.30
3242 7473 2.496679 ACTGCTGTACCATATCCCCT 57.503 50.000 0.00 0.00 0.00 4.79
3248 7479 5.245301 AGAAGTGTTGTACTGCTGTACCATA 59.755 40.000 25.51 13.97 44.04 2.74
3252 7483 7.653767 ATTAAGAAGTGTTGTACTGCTGTAC 57.346 36.000 22.87 22.87 45.02 2.90
3253 7484 9.938280 AATATTAAGAAGTGTTGTACTGCTGTA 57.062 29.630 0.00 0.00 45.02 2.74
3255 7486 7.693951 GCAATATTAAGAAGTGTTGTACTGCTG 59.306 37.037 0.00 0.00 45.02 4.41
3258 7489 8.935844 TCAGCAATATTAAGAAGTGTTGTACTG 58.064 33.333 0.00 0.00 40.26 2.74
3259 7490 9.155975 CTCAGCAATATTAAGAAGTGTTGTACT 57.844 33.333 0.00 0.00 42.89 2.73
3260 7491 7.905493 GCTCAGCAATATTAAGAAGTGTTGTAC 59.095 37.037 0.00 0.00 0.00 2.90
3262 7493 6.656693 AGCTCAGCAATATTAAGAAGTGTTGT 59.343 34.615 0.00 0.00 0.00 3.32
3264 7495 6.881065 TCAGCTCAGCAATATTAAGAAGTGTT 59.119 34.615 0.00 0.00 0.00 3.32
3265 7496 6.409704 TCAGCTCAGCAATATTAAGAAGTGT 58.590 36.000 0.00 0.00 0.00 3.55
3266 7497 6.915544 TCAGCTCAGCAATATTAAGAAGTG 57.084 37.500 0.00 0.00 0.00 3.16
3267 7498 7.278135 TGATCAGCTCAGCAATATTAAGAAGT 58.722 34.615 0.00 0.00 0.00 3.01
3268 7499 7.725818 TGATCAGCTCAGCAATATTAAGAAG 57.274 36.000 0.00 0.00 0.00 2.85
3269 7500 7.935210 TCATGATCAGCTCAGCAATATTAAGAA 59.065 33.333 0.00 0.00 37.28 2.52
3270 7501 7.447594 TCATGATCAGCTCAGCAATATTAAGA 58.552 34.615 0.00 0.00 37.28 2.10
3271 7502 7.668525 TCATGATCAGCTCAGCAATATTAAG 57.331 36.000 0.00 0.00 37.28 1.85
3272 7503 8.631480 AATCATGATCAGCTCAGCAATATTAA 57.369 30.769 9.06 0.00 37.28 1.40
3273 7504 8.631480 AAATCATGATCAGCTCAGCAATATTA 57.369 30.769 9.06 0.00 37.28 0.98
3274 7505 7.526142 AAATCATGATCAGCTCAGCAATATT 57.474 32.000 9.06 0.00 37.28 1.28
3277 7508 5.127194 ACAAAATCATGATCAGCTCAGCAAT 59.873 36.000 9.06 0.00 37.28 3.56
3315 7546 6.707161 ACCTACGCAACTTTTTAGTGTATGAA 59.293 34.615 0.00 0.00 0.00 2.57
3316 7547 6.146510 CACCTACGCAACTTTTTAGTGTATGA 59.853 38.462 0.00 0.00 0.00 2.15
3317 7548 6.304126 CACCTACGCAACTTTTTAGTGTATG 58.696 40.000 0.00 0.00 0.00 2.39
3319 7550 4.211794 GCACCTACGCAACTTTTTAGTGTA 59.788 41.667 0.00 0.00 0.00 2.90
3321 7552 3.250040 AGCACCTACGCAACTTTTTAGTG 59.750 43.478 0.00 0.00 0.00 2.74
3322 7553 3.473625 AGCACCTACGCAACTTTTTAGT 58.526 40.909 0.00 0.00 0.00 2.24
3323 7554 4.213482 AGAAGCACCTACGCAACTTTTTAG 59.787 41.667 0.00 0.00 0.00 1.85
3327 7558 1.873591 CAGAAGCACCTACGCAACTTT 59.126 47.619 0.00 0.00 0.00 2.66
3328 7559 1.512926 CAGAAGCACCTACGCAACTT 58.487 50.000 0.00 0.00 0.00 2.66
3329 7560 0.951040 GCAGAAGCACCTACGCAACT 60.951 55.000 0.00 0.00 41.58 3.16
3333 8102 0.456221 TCTAGCAGAAGCACCTACGC 59.544 55.000 0.00 0.00 45.49 4.42
3335 8104 7.713073 AGATAAAAATCTAGCAGAAGCACCTAC 59.287 37.037 0.00 0.00 45.49 3.18
3367 8136 9.245962 CGTTAATCTCTAAGTAACCCAATACAG 57.754 37.037 0.00 0.00 0.00 2.74
3369 8138 7.924947 AGCGTTAATCTCTAAGTAACCCAATAC 59.075 37.037 0.00 0.00 0.00 1.89
3370 8139 8.015185 AGCGTTAATCTCTAAGTAACCCAATA 57.985 34.615 0.00 0.00 0.00 1.90
3371 8140 6.885922 AGCGTTAATCTCTAAGTAACCCAAT 58.114 36.000 0.00 0.00 0.00 3.16
3372 8141 6.290294 AGCGTTAATCTCTAAGTAACCCAA 57.710 37.500 0.00 0.00 0.00 4.12
3376 8145 8.493547 ACACAAAAGCGTTAATCTCTAAGTAAC 58.506 33.333 0.00 0.00 0.00 2.50
3380 8149 7.797819 AGAACACAAAAGCGTTAATCTCTAAG 58.202 34.615 0.00 0.00 0.00 2.18
3381 8150 7.095355 GGAGAACACAAAAGCGTTAATCTCTAA 60.095 37.037 0.00 0.00 0.00 2.10
3383 8152 5.179555 GGAGAACACAAAAGCGTTAATCTCT 59.820 40.000 0.00 0.73 0.00 3.10
3392 8161 0.593128 CCCTGGAGAACACAAAAGCG 59.407 55.000 0.00 0.00 0.00 4.68
3393 8162 0.961753 CCCCTGGAGAACACAAAAGC 59.038 55.000 0.00 0.00 0.00 3.51
3422 8191 3.056536 TCAGGAAAGTAGTACAGCAGCAG 60.057 47.826 2.52 0.00 0.00 4.24
3423 8192 2.897326 TCAGGAAAGTAGTACAGCAGCA 59.103 45.455 2.52 0.00 0.00 4.41
3427 8196 7.493367 ACTCATTATCAGGAAAGTAGTACAGC 58.507 38.462 2.52 0.00 0.00 4.40
3433 8202 7.923344 ACGATGAACTCATTATCAGGAAAGTAG 59.077 37.037 0.00 0.00 36.57 2.57
3435 8204 6.536582 CACGATGAACTCATTATCAGGAAAGT 59.463 38.462 0.00 0.00 36.57 2.66
3436 8205 6.510799 GCACGATGAACTCATTATCAGGAAAG 60.511 42.308 0.00 0.00 36.57 2.62
3440 8209 4.375272 AGCACGATGAACTCATTATCAGG 58.625 43.478 0.00 0.00 36.57 3.86
3441 8210 5.980698 AAGCACGATGAACTCATTATCAG 57.019 39.130 0.00 0.00 36.57 2.90
3443 8212 6.349973 TGAAAGCACGATGAACTCATTATC 57.650 37.500 0.00 0.00 36.57 1.75
3444 8213 6.741992 TTGAAAGCACGATGAACTCATTAT 57.258 33.333 0.00 0.00 36.57 1.28
3445 8214 6.149308 ACATTGAAAGCACGATGAACTCATTA 59.851 34.615 11.06 0.00 36.57 1.90
3454 8223 2.725759 CGACCACATTGAAAGCACGATG 60.726 50.000 0.00 0.00 37.59 3.84
3455 8224 1.464608 CGACCACATTGAAAGCACGAT 59.535 47.619 0.00 0.00 0.00 3.73
3462 8231 1.202758 ACTCTGCCGACCACATTGAAA 60.203 47.619 0.00 0.00 0.00 2.69
3463 8232 0.396435 ACTCTGCCGACCACATTGAA 59.604 50.000 0.00 0.00 0.00 2.69
3468 8237 1.346395 ACATAAACTCTGCCGACCACA 59.654 47.619 0.00 0.00 0.00 4.17
3492 8261 8.680903 CAGATGCATTTAGTAAAGTTCCTTCAT 58.319 33.333 0.00 0.00 0.00 2.57
3498 8267 6.442513 AGGCAGATGCATTTAGTAAAGTTC 57.557 37.500 0.00 0.00 44.36 3.01
3501 8270 7.497249 AGACTAAGGCAGATGCATTTAGTAAAG 59.503 37.037 22.83 12.28 42.92 1.85
3502 8271 7.338710 AGACTAAGGCAGATGCATTTAGTAAA 58.661 34.615 22.83 0.00 42.92 2.01
3507 8276 5.070981 AGCTAGACTAAGGCAGATGCATTTA 59.929 40.000 10.21 5.60 42.92 1.40
3510 8279 2.971330 AGCTAGACTAAGGCAGATGCAT 59.029 45.455 0.00 0.00 44.36 3.96
3521 8290 7.914346 GCTACATTCGAAACTTAGCTAGACTAA 59.086 37.037 20.51 0.18 38.57 2.24
3522 8291 7.066645 TGCTACATTCGAAACTTAGCTAGACTA 59.933 37.037 24.70 10.33 36.83 2.59
3523 8292 6.127703 TGCTACATTCGAAACTTAGCTAGACT 60.128 38.462 24.70 0.00 36.83 3.24
3525 8294 6.203808 TGCTACATTCGAAACTTAGCTAGA 57.796 37.500 24.70 11.31 36.83 2.43
3526 8295 6.752351 TCTTGCTACATTCGAAACTTAGCTAG 59.248 38.462 24.82 24.82 38.91 3.42
3568 8337 9.614792 AAAATCCGACTTGAAATAATACTAGCT 57.385 29.630 0.00 0.00 0.00 3.32
3569 8338 9.651718 CAAAATCCGACTTGAAATAATACTAGC 57.348 33.333 0.00 0.00 0.00 3.42
3572 8341 8.458843 CCACAAAATCCGACTTGAAATAATACT 58.541 33.333 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.