Multiple sequence alignment - TraesCS3D01G027600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G027600 chr3D 100.000 5818 0 0 1 5818 9421227 9415410 0.000000e+00 10744.0
1 TraesCS3D01G027600 chr3D 89.619 2389 209 25 3222 5596 5232921 5235284 0.000000e+00 3001.0
2 TraesCS3D01G027600 chr3D 85.130 1930 226 38 3226 5102 591822391 591820470 0.000000e+00 1917.0
3 TraesCS3D01G027600 chr3D 86.738 935 66 29 764 1685 5230529 5231418 0.000000e+00 987.0
4 TraesCS3D01G027600 chr3D 91.680 613 46 3 2461 3069 5232260 5232871 0.000000e+00 845.0
5 TraesCS3D01G027600 chr3D 84.195 677 57 27 1044 1707 591827237 591826598 3.850000e-171 612.0
6 TraesCS3D01G027600 chr3D 85.520 587 53 11 955 1519 5221877 5222453 8.400000e-163 584.0
7 TraesCS3D01G027600 chr3D 83.192 589 81 16 2503 3086 591822970 591822395 1.860000e-144 523.0
8 TraesCS3D01G027600 chr3B 89.422 2543 222 30 3211 5727 28316486 28313965 0.000000e+00 3162.0
9 TraesCS3D01G027600 chr3B 84.533 1959 212 50 3227 5102 792861989 792863939 0.000000e+00 1855.0
10 TraesCS3D01G027600 chr3B 90.244 1271 84 19 3905 5155 13506747 13505497 0.000000e+00 1624.0
11 TraesCS3D01G027600 chr3B 85.146 1030 52 35 703 1702 28319233 28318275 0.000000e+00 961.0
12 TraesCS3D01G027600 chr3B 90.879 614 50 4 2461 3069 28317157 28316545 0.000000e+00 819.0
13 TraesCS3D01G027600 chr3B 92.049 566 38 3 3353 3912 13508687 13508123 0.000000e+00 789.0
14 TraesCS3D01G027600 chr3B 91.065 526 42 2 47 572 28322708 28322188 0.000000e+00 706.0
15 TraesCS3D01G027600 chr3B 85.333 600 73 13 5149 5742 13504550 13503960 1.790000e-169 606.0
16 TraesCS3D01G027600 chr3B 92.112 393 25 3 1064 1456 13509678 13509292 3.060000e-152 549.0
17 TraesCS3D01G027600 chr3B 81.587 668 68 37 1044 1700 792858125 792858748 8.700000e-138 501.0
18 TraesCS3D01G027600 chr3B 87.887 355 40 3 2498 2851 792861387 792861739 1.170000e-111 414.0
19 TraesCS3D01G027600 chr3B 85.961 406 27 9 2032 2424 28317983 28317595 1.950000e-109 407.0
20 TraesCS3D01G027600 chr3B 90.503 179 11 2 1825 2003 672963433 672963605 1.260000e-56 231.0
21 TraesCS3D01G027600 chr3B 90.503 179 11 3 1825 2003 673063293 673063465 1.260000e-56 231.0
22 TraesCS3D01G027600 chr3B 96.970 132 4 0 579 710 28319656 28319525 7.590000e-54 222.0
23 TraesCS3D01G027600 chr3B 92.715 151 7 1 1570 1720 13509215 13509069 1.270000e-51 215.0
24 TraesCS3D01G027600 chr3B 86.029 136 3 5 764 899 13526556 13526437 1.320000e-26 132.0
25 TraesCS3D01G027600 chr3B 85.294 136 4 6 764 899 13554837 13554718 6.120000e-25 126.0
26 TraesCS3D01G027600 chr3B 96.078 51 2 0 992 1042 13509731 13509681 3.740000e-12 84.2
27 TraesCS3D01G027600 chr3B 100.000 35 0 0 2002 2036 28318035 28318001 1.350000e-06 65.8
28 TraesCS3D01G027600 chrUn 91.206 1990 151 16 3232 5210 36512181 36514157 0.000000e+00 2684.0
29 TraesCS3D01G027600 chrUn 85.874 984 63 38 764 1727 36507924 36508851 0.000000e+00 977.0
30 TraesCS3D01G027600 chrUn 91.803 610 48 2 2461 3069 36511533 36512141 0.000000e+00 848.0
31 TraesCS3D01G027600 chrUn 82.163 712 100 18 4899 5606 35697399 35698087 2.340000e-163 586.0
32 TraesCS3D01G027600 chr3A 92.505 1641 114 8 3226 4862 11760927 11762562 0.000000e+00 2340.0
33 TraesCS3D01G027600 chr3A 85.413 1947 210 40 3226 5102 722279611 722281553 0.000000e+00 1954.0
34 TraesCS3D01G027600 chr3A 85.847 968 57 32 764 1695 11757937 11758860 0.000000e+00 955.0
35 TraesCS3D01G027600 chr3A 85.573 908 105 18 4835 5733 11762565 11763455 0.000000e+00 928.0
36 TraesCS3D01G027600 chr3A 92.985 613 38 3 2461 3069 11760241 11760852 0.000000e+00 889.0
37 TraesCS3D01G027600 chr3A 84.237 590 71 13 2509 3087 722279038 722279616 6.590000e-154 555.0
38 TraesCS3D01G027600 chr3A 81.406 683 80 29 1044 1704 722275219 722275876 1.120000e-141 514.0
39 TraesCS3D01G027600 chr3A 84.916 358 38 9 4752 5093 325905140 325904783 1.200000e-91 348.0
40 TraesCS3D01G027600 chr3A 90.556 180 10 3 1833 2011 649812005 649811832 1.260000e-56 231.0
41 TraesCS3D01G027600 chr7D 91.061 179 11 1 1834 2012 440561744 440561571 2.710000e-58 237.0
42 TraesCS3D01G027600 chr7D 90.449 178 11 2 1834 2010 154562603 154562775 4.530000e-56 230.0
43 TraesCS3D01G027600 chr7D 92.857 42 3 0 1794 1835 177109901 177109860 1.750000e-05 62.1
44 TraesCS3D01G027600 chr7D 100.000 29 0 0 3131 3159 519785492 519785520 3.000000e-03 54.7
45 TraesCS3D01G027600 chr7B 91.061 179 11 1 1834 2012 458341631 458341458 2.710000e-58 237.0
46 TraesCS3D01G027600 chr7B 89.062 64 7 0 1391 1454 532484538 532484475 4.830000e-11 80.5
47 TraesCS3D01G027600 chr7B 94.286 35 0 2 3127 3159 553125972 553126006 1.100000e-02 52.8
48 TraesCS3D01G027600 chr7A 90.556 180 11 2 1824 2003 320981346 320981173 3.510000e-57 233.0
49 TraesCS3D01G027600 chr7A 85.185 54 8 0 3106 3159 595942681 595942734 8.140000e-04 56.5
50 TraesCS3D01G027600 chr7A 100.000 30 0 0 5748 5777 722828739 722828710 8.140000e-04 56.5
51 TraesCS3D01G027600 chr6B 90.164 183 13 1 1824 2006 171210692 171210869 3.510000e-57 233.0
52 TraesCS3D01G027600 chr6B 80.660 212 41 0 2625 2836 234151762 234151973 1.300000e-36 165.0
53 TraesCS3D01G027600 chr6B 91.111 45 4 0 1791 1835 144270574 144270618 1.750000e-05 62.1
54 TraesCS3D01G027600 chr2A 86.829 205 15 8 1827 2031 587332678 587332870 9.820000e-53 219.0
55 TraesCS3D01G027600 chr2A 92.857 42 3 0 1794 1835 690525475 690525516 1.750000e-05 62.1
56 TraesCS3D01G027600 chr6A 79.911 224 45 0 2625 2848 176982829 176983052 1.300000e-36 165.0
57 TraesCS3D01G027600 chr6A 93.182 44 3 0 1794 1837 55552636 55552593 1.350000e-06 65.8
58 TraesCS3D01G027600 chr5D 97.059 34 1 0 1799 1832 370958072 370958039 2.260000e-04 58.4
59 TraesCS3D01G027600 chr5D 100.000 30 0 0 1803 1832 371069779 371069750 8.140000e-04 56.5
60 TraesCS3D01G027600 chr1D 94.286 35 2 0 1799 1833 61778307 61778273 3.000000e-03 54.7
61 TraesCS3D01G027600 chr6D 100.000 28 0 0 3132 3159 8783480 8783453 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G027600 chr3D 9415410 9421227 5817 True 10744.000000 10744 100.000000 1 5818 1 chr3D.!!$R1 5817
1 TraesCS3D01G027600 chr3D 5230529 5235284 4755 False 1611.000000 3001 89.345667 764 5596 3 chr3D.!!$F2 4832
2 TraesCS3D01G027600 chr3D 591820470 591827237 6767 True 1017.333333 1917 84.172333 1044 5102 3 chr3D.!!$R2 4058
3 TraesCS3D01G027600 chr3D 5221877 5222453 576 False 584.000000 584 85.520000 955 1519 1 chr3D.!!$F1 564
4 TraesCS3D01G027600 chr3B 792858125 792863939 5814 False 923.333333 1855 84.669000 1044 5102 3 chr3B.!!$F3 4058
5 TraesCS3D01G027600 chr3B 28313965 28322708 8743 True 906.114286 3162 91.349000 47 5727 7 chr3B.!!$R4 5680
6 TraesCS3D01G027600 chr3B 13503960 13509731 5771 True 644.533333 1624 91.421833 992 5742 6 chr3B.!!$R3 4750
7 TraesCS3D01G027600 chrUn 36507924 36514157 6233 False 1503.000000 2684 89.627667 764 5210 3 chrUn.!!$F2 4446
8 TraesCS3D01G027600 chrUn 35697399 35698087 688 False 586.000000 586 82.163000 4899 5606 1 chrUn.!!$F1 707
9 TraesCS3D01G027600 chr3A 11757937 11763455 5518 False 1278.000000 2340 89.227500 764 5733 4 chr3A.!!$F1 4969
10 TraesCS3D01G027600 chr3A 722275219 722281553 6334 False 1007.666667 1954 83.685333 1044 5102 3 chr3A.!!$F2 4058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 3582 0.110486 ACGGCACTTCCTTTGTCCAT 59.890 50.000 0.00 0.00 0.00 3.41 F
811 3642 0.469144 AGTGCTCCTAGGCTCCTAGC 60.469 60.000 15.80 11.57 43.35 3.42 F
812 3643 0.469144 GTGCTCCTAGGCTCCTAGCT 60.469 60.000 17.60 0.00 43.35 3.32 F
1577 4530 0.671781 GGATCGCCGGATGGAATGAG 60.672 60.000 5.05 0.00 37.49 2.90 F
2866 11511 0.543277 TCAGCCCTCTTGCACTATGG 59.457 55.000 0.00 0.00 0.00 2.74 F
3430 12152 1.067142 AGGCGATGTCAAAGTAAGCGA 60.067 47.619 0.00 0.00 0.00 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2645 11278 0.539669 TGCGGTTCTCTCTGACCTCA 60.540 55.000 0.00 0.0 0.00 3.86 R
2777 11410 3.951769 GAGGAAGGGGACGGTCCGA 62.952 68.421 20.51 0.0 42.40 4.55 R
2822 11455 0.371645 CGAATTTCCAGCGAGTCTGC 59.628 55.000 0.00 0.0 41.50 4.26 R
3114 11836 1.725803 AGAGACCACGGGTTTAACCT 58.274 50.000 14.27 0.0 38.64 3.50 R
4503 14673 1.126113 CGTGTGCCGATGTACTCAAAC 59.874 52.381 0.00 0.0 39.56 2.93 R
5102 15381 0.179089 CTCTGCCTCACATCGAAGGG 60.179 60.000 3.14 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.907879 GGCAATACCCTGAAAATCTCTG 57.092 45.455 0.00 0.00 0.00 3.35
26 27 4.273318 GGCAATACCCTGAAAATCTCTGT 58.727 43.478 0.00 0.00 0.00 3.41
27 28 4.096984 GGCAATACCCTGAAAATCTCTGTG 59.903 45.833 0.00 0.00 0.00 3.66
28 29 4.943705 GCAATACCCTGAAAATCTCTGTGA 59.056 41.667 0.00 0.00 0.00 3.58
29 30 5.591877 GCAATACCCTGAAAATCTCTGTGAT 59.408 40.000 0.00 0.00 36.89 3.06
30 31 6.459298 GCAATACCCTGAAAATCTCTGTGATG 60.459 42.308 0.00 0.00 35.21 3.07
31 32 4.916041 ACCCTGAAAATCTCTGTGATGA 57.084 40.909 0.00 0.00 35.21 2.92
32 33 4.583871 ACCCTGAAAATCTCTGTGATGAC 58.416 43.478 0.00 0.00 35.21 3.06
33 34 4.288105 ACCCTGAAAATCTCTGTGATGACT 59.712 41.667 0.00 0.00 35.21 3.41
34 35 5.222007 ACCCTGAAAATCTCTGTGATGACTT 60.222 40.000 0.00 0.00 35.21 3.01
35 36 5.709164 CCCTGAAAATCTCTGTGATGACTTT 59.291 40.000 0.00 0.00 35.21 2.66
36 37 6.349115 CCCTGAAAATCTCTGTGATGACTTTG 60.349 42.308 0.00 0.00 35.21 2.77
37 38 6.429078 CCTGAAAATCTCTGTGATGACTTTGA 59.571 38.462 0.00 0.00 35.21 2.69
38 39 7.194607 TGAAAATCTCTGTGATGACTTTGAC 57.805 36.000 0.00 0.00 35.21 3.18
39 40 6.994496 TGAAAATCTCTGTGATGACTTTGACT 59.006 34.615 0.00 0.00 35.21 3.41
40 41 6.798315 AAATCTCTGTGATGACTTTGACTG 57.202 37.500 0.00 0.00 35.21 3.51
41 42 3.657634 TCTCTGTGATGACTTTGACTGC 58.342 45.455 0.00 0.00 0.00 4.40
42 43 2.740981 CTCTGTGATGACTTTGACTGCC 59.259 50.000 0.00 0.00 0.00 4.85
43 44 2.104622 TCTGTGATGACTTTGACTGCCA 59.895 45.455 0.00 0.00 0.00 4.92
44 45 2.483106 CTGTGATGACTTTGACTGCCAG 59.517 50.000 0.00 0.00 0.00 4.85
45 46 1.198637 GTGATGACTTTGACTGCCAGC 59.801 52.381 0.00 0.00 0.00 4.85
59 60 2.553602 CTGCCAGCTGTATTGTGTGAAA 59.446 45.455 13.81 0.00 0.00 2.69
67 68 4.581493 CTGTATTGTGTGAAATAGCTGCG 58.419 43.478 0.00 0.00 0.00 5.18
77 78 0.676782 AATAGCTGCGTTGGGGACAC 60.677 55.000 0.00 0.00 42.67 3.67
80 81 2.425592 CTGCGTTGGGGACACAGA 59.574 61.111 0.00 0.00 40.15 3.41
91 92 3.316868 TGGGGACACAGATTTTCGTTTTC 59.683 43.478 0.00 0.00 33.40 2.29
128 129 3.129988 GGATGGACAAAGGAATTGCTCTG 59.870 47.826 0.00 0.00 43.13 3.35
150 151 4.260170 GAGATCAGGTGCAGATTCAACTT 58.740 43.478 0.00 0.00 30.19 2.66
152 153 4.699257 AGATCAGGTGCAGATTCAACTTTC 59.301 41.667 0.00 0.00 30.19 2.62
179 180 5.856126 TTTTAATTAGTGACCGCTCTGTG 57.144 39.130 0.00 0.00 0.00 3.66
185 186 0.721718 GTGACCGCTCTGTGTATTGC 59.278 55.000 0.00 0.00 0.00 3.56
194 195 0.723414 CTGTGTATTGCTGAGCCACG 59.277 55.000 0.23 0.00 0.00 4.94
250 251 1.482182 CAGCTATGAGGCACTGTACCA 59.518 52.381 0.00 0.00 41.55 3.25
259 260 0.588252 GCACTGTACCACACAAGCAG 59.412 55.000 0.00 0.00 37.87 4.24
275 276 4.145795 CAAGCAGTTTGACCGAATTGTCG 61.146 47.826 0.00 0.00 42.04 4.35
277 278 1.531149 CAGTTTGACCGAATTGTCGCT 59.469 47.619 0.00 0.00 46.28 4.93
285 286 1.255342 CCGAATTGTCGCTGACATACG 59.745 52.381 11.23 14.47 46.28 3.06
288 289 1.922570 ATTGTCGCTGACATACGTCC 58.077 50.000 11.23 0.00 42.40 4.79
289 290 0.599060 TTGTCGCTGACATACGTCCA 59.401 50.000 11.23 0.00 42.40 4.02
336 337 6.232139 CATTCTTTGCTTTTGAATGGTTCC 57.768 37.500 0.00 0.00 41.70 3.62
338 339 3.634448 TCTTTGCTTTTGAATGGTTCCGA 59.366 39.130 0.00 0.00 0.00 4.55
348 349 2.781681 ATGGTTCCGAGGACGAAAAT 57.218 45.000 0.00 0.00 42.66 1.82
359 360 4.449743 CGAGGACGAAAATGAGGTTTTGTA 59.550 41.667 0.00 0.00 40.04 2.41
367 368 6.143118 CGAAAATGAGGTTTTGTAATTTCGCA 59.857 34.615 0.00 0.00 40.04 5.10
368 369 7.148820 CGAAAATGAGGTTTTGTAATTTCGCAT 60.149 33.333 0.00 0.00 40.04 4.73
369 370 9.134734 GAAAATGAGGTTTTGTAATTTCGCATA 57.865 29.630 0.00 0.00 40.04 3.14
370 371 9.651913 AAAATGAGGTTTTGTAATTTCGCATAT 57.348 25.926 0.00 0.00 38.56 1.78
390 391 6.539826 GCATATATATGTGCAACCATGCTAGA 59.460 38.462 24.67 0.00 43.34 2.43
421 422 5.487433 TGAACAAACTCTTCAGACTTGTGA 58.513 37.500 1.88 0.00 32.77 3.58
437 438 8.777413 CAGACTTGTGACATTTCTTGAAGATAA 58.223 33.333 0.00 0.00 0.00 1.75
444 445 9.912634 GTGACATTTCTTGAAGATAAATCCAAA 57.087 29.630 0.00 0.00 0.00 3.28
493 494 7.066374 AGAGTTTTAGCTGAAGATAAAAGCG 57.934 36.000 12.45 0.00 43.65 4.68
501 502 4.201763 GCTGAAGATAAAAGCGAGGTTGAG 60.202 45.833 0.00 0.00 0.00 3.02
561 562 5.859521 TTATTTTTAGCGGCGTTTACTGA 57.140 34.783 9.37 0.00 0.00 3.41
566 567 0.669625 AGCGGCGTTTACTGAAGGAC 60.670 55.000 9.37 0.00 0.00 3.85
569 570 2.073816 CGGCGTTTACTGAAGGACATT 58.926 47.619 0.00 0.00 30.39 2.71
572 573 4.435121 CGGCGTTTACTGAAGGACATTTAC 60.435 45.833 0.00 0.00 30.39 2.01
573 574 4.142752 GGCGTTTACTGAAGGACATTTACC 60.143 45.833 0.00 0.00 31.37 2.85
574 575 4.694037 GCGTTTACTGAAGGACATTTACCT 59.306 41.667 0.00 0.00 39.69 3.08
575 576 5.870978 GCGTTTACTGAAGGACATTTACCTA 59.129 40.000 0.00 0.00 36.67 3.08
576 577 6.369615 GCGTTTACTGAAGGACATTTACCTAA 59.630 38.462 0.00 0.00 36.67 2.69
611 3137 4.141846 TGCCTATCTGCTTCACCTCTTTAG 60.142 45.833 0.00 0.00 0.00 1.85
683 3209 7.707624 AGAATAGCATCACCTTTCAATTCAA 57.292 32.000 0.00 0.00 0.00 2.69
698 3224 7.581213 TTCAATTCAACCAACAATGTACTCT 57.419 32.000 0.00 0.00 0.00 3.24
744 3569 3.907894 TTTTGTAGAAATGGACGGCAC 57.092 42.857 0.00 0.00 0.00 5.01
745 3570 2.851263 TTGTAGAAATGGACGGCACT 57.149 45.000 0.00 0.00 0.00 4.40
746 3571 2.851263 TGTAGAAATGGACGGCACTT 57.149 45.000 0.00 0.00 0.00 3.16
747 3572 2.695359 TGTAGAAATGGACGGCACTTC 58.305 47.619 0.00 0.00 0.00 3.01
753 3578 4.475527 GGACGGCACTTCCTTTGT 57.524 55.556 0.00 0.00 44.11 2.83
754 3579 2.244946 GGACGGCACTTCCTTTGTC 58.755 57.895 0.00 0.00 44.11 3.18
755 3580 1.235281 GGACGGCACTTCCTTTGTCC 61.235 60.000 0.00 0.00 44.11 4.02
756 3581 0.534203 GACGGCACTTCCTTTGTCCA 60.534 55.000 0.00 0.00 0.00 4.02
757 3582 0.110486 ACGGCACTTCCTTTGTCCAT 59.890 50.000 0.00 0.00 0.00 3.41
758 3583 0.804989 CGGCACTTCCTTTGTCCATC 59.195 55.000 0.00 0.00 0.00 3.51
759 3584 1.177401 GGCACTTCCTTTGTCCATCC 58.823 55.000 0.00 0.00 0.00 3.51
760 3585 1.272147 GGCACTTCCTTTGTCCATCCT 60.272 52.381 0.00 0.00 0.00 3.24
761 3586 2.026262 GGCACTTCCTTTGTCCATCCTA 60.026 50.000 0.00 0.00 0.00 2.94
762 3587 3.274288 GCACTTCCTTTGTCCATCCTAG 58.726 50.000 0.00 0.00 0.00 3.02
792 3623 1.691976 CTGTATGCGGATTGGGGAGTA 59.308 52.381 0.00 0.00 0.00 2.59
807 3638 1.324383 GAGTAGTGCTCCTAGGCTCC 58.676 60.000 2.96 0.00 38.27 4.70
808 3639 0.930726 AGTAGTGCTCCTAGGCTCCT 59.069 55.000 2.96 0.00 0.00 3.69
809 3640 2.106857 GAGTAGTGCTCCTAGGCTCCTA 59.893 54.545 2.96 0.00 38.27 2.94
810 3641 2.107552 AGTAGTGCTCCTAGGCTCCTAG 59.892 54.545 14.56 14.56 44.07 3.02
811 3642 0.469144 AGTGCTCCTAGGCTCCTAGC 60.469 60.000 15.80 11.57 43.35 3.42
812 3643 0.469144 GTGCTCCTAGGCTCCTAGCT 60.469 60.000 17.60 0.00 43.35 3.32
813 3644 1.149986 TGCTCCTAGGCTCCTAGCTA 58.850 55.000 17.60 6.72 43.35 3.32
852 3687 2.375014 TGACAGGTCACCAGACTACA 57.625 50.000 0.00 0.00 44.36 2.74
853 3688 2.889512 TGACAGGTCACCAGACTACAT 58.110 47.619 0.00 0.00 44.36 2.29
854 3689 2.562738 TGACAGGTCACCAGACTACATG 59.437 50.000 0.00 0.00 44.36 3.21
886 3721 1.065998 GGCAACATTCCCATGCATGTT 60.066 47.619 24.58 10.48 43.06 2.71
943 3778 2.621526 ACATACTCCATGTGCATGCATG 59.378 45.455 25.64 22.70 46.41 4.06
944 3779 5.103956 ACATACTCCATGTGCATGCATGC 62.104 47.826 38.71 38.71 46.41 4.06
1033 3891 1.270414 ATCTGCACCCAGTCCTCCTG 61.270 60.000 0.00 0.00 40.09 3.86
1210 4098 2.046507 CTGCTGGTGCTCCTGTCC 60.047 66.667 12.54 0.00 40.48 4.02
1373 4261 1.596934 GAGGAGGACGGCATTGTCA 59.403 57.895 0.00 0.00 40.72 3.58
1385 4279 1.079197 ATTGTCATCGTCGGCAGCA 60.079 52.632 0.00 0.00 0.00 4.41
1470 4397 5.416952 AGGTGAGCTCAATAGGAAAATGTTG 59.583 40.000 20.19 0.00 0.00 3.33
1485 4412 6.128580 GGAAAATGTTGGTTGATCGATTTTGG 60.129 38.462 0.00 0.00 0.00 3.28
1499 4426 4.958897 TTGGTTTGACCGGCGGGG 62.959 66.667 31.78 6.19 42.58 5.73
1564 4492 1.543802 TGTTTGGTTGGATTGGATCGC 59.456 47.619 0.00 0.00 0.00 4.58
1577 4530 0.671781 GGATCGCCGGATGGAATGAG 60.672 60.000 5.05 0.00 37.49 2.90
1794 4872 4.828291 GCAATTTGCGTTCGTACTACTA 57.172 40.909 5.49 0.00 31.71 1.82
1806 4884 7.169308 GCGTTCGTACTACTACTACCTATGTAA 59.831 40.741 0.00 0.00 0.00 2.41
1841 4919 8.296211 AGAGTGTTTTAGATTACTACTCCCTC 57.704 38.462 0.00 0.00 0.00 4.30
1843 4921 6.958192 AGTGTTTTAGATTACTACTCCCTCCA 59.042 38.462 0.00 0.00 0.00 3.86
1883 4961 9.439537 GTTTTTCTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
1884 4962 8.964476 TTTTCTAGAGATTTCAACAAGTGACT 57.036 30.769 0.00 0.00 35.39 3.41
1886 4964 7.953158 TCTAGAGATTTCAACAAGTGACTTG 57.047 36.000 22.73 22.73 45.85 3.16
1887 4965 7.726216 TCTAGAGATTTCAACAAGTGACTTGA 58.274 34.615 30.03 9.15 43.42 3.02
1888 4966 6.610741 AGAGATTTCAACAAGTGACTTGAC 57.389 37.500 30.03 12.07 43.42 3.18
1890 4968 6.599244 AGAGATTTCAACAAGTGACTTGACAA 59.401 34.615 30.03 16.04 43.42 3.18
1891 4969 6.555315 AGATTTCAACAAGTGACTTGACAAC 58.445 36.000 30.03 14.00 43.42 3.32
1977 5058 9.449719 GTAGTCCATTTGAAATCTCTAAAAGGA 57.550 33.333 0.00 0.00 0.00 3.36
1999 5098 6.069847 AGGACAAATATTTAGAAACGGAGGGA 60.070 38.462 0.00 0.00 0.00 4.20
2083 5997 2.044860 CGATCGATCGTAGGCAAGAAC 58.955 52.381 33.95 0.87 44.74 3.01
2136 6598 2.566833 TCACCAGAACATGTTCCCAG 57.433 50.000 30.34 22.04 40.33 4.45
2270 6804 6.369065 CCTAGTCAACGCTTCACTATCTTTTT 59.631 38.462 0.00 0.00 0.00 1.94
2285 6819 3.149196 TCTTTTTGAGCCTCGCAGAAAT 58.851 40.909 0.00 0.00 34.09 2.17
2332 8797 3.276846 AAGTTCGCGGTGCCACAC 61.277 61.111 6.13 0.00 0.00 3.82
2364 8829 1.471684 CGAGTAGTGCTACCTCCGTTT 59.528 52.381 5.80 0.00 36.75 3.60
2404 9180 5.003160 TCTGGATTTCTCGAAAATCAAGCA 58.997 37.500 22.74 15.45 37.52 3.91
2450 11022 4.813296 GACAAATTGTCAGTCGGAAAGT 57.187 40.909 20.08 0.00 46.22 2.66
2453 11025 4.398044 ACAAATTGTCAGTCGGAAAGTTGT 59.602 37.500 0.00 0.82 36.37 3.32
2454 11026 5.587043 ACAAATTGTCAGTCGGAAAGTTGTA 59.413 36.000 4.06 0.00 38.57 2.41
2455 11027 5.924475 AATTGTCAGTCGGAAAGTTGTAG 57.076 39.130 0.00 0.00 0.00 2.74
2456 11028 2.750948 TGTCAGTCGGAAAGTTGTAGC 58.249 47.619 0.00 0.00 0.00 3.58
2457 11029 2.067013 GTCAGTCGGAAAGTTGTAGCC 58.933 52.381 0.00 0.00 0.00 3.93
2458 11030 1.968493 TCAGTCGGAAAGTTGTAGCCT 59.032 47.619 0.00 0.00 0.00 4.58
2459 11031 2.029290 TCAGTCGGAAAGTTGTAGCCTC 60.029 50.000 0.00 0.00 0.00 4.70
2463 11035 3.125316 GTCGGAAAGTTGTAGCCTCATTG 59.875 47.826 0.00 0.00 0.00 2.82
2466 11038 4.072131 GGAAAGTTGTAGCCTCATTGTCA 58.928 43.478 0.00 0.00 0.00 3.58
2467 11039 4.154918 GGAAAGTTGTAGCCTCATTGTCAG 59.845 45.833 0.00 0.00 0.00 3.51
2468 11040 4.357918 AAGTTGTAGCCTCATTGTCAGT 57.642 40.909 0.00 0.00 0.00 3.41
2564 11197 6.624861 GCACAATTCCAGATAAAAACCGATCA 60.625 38.462 0.00 0.00 0.00 2.92
2578 11211 7.745620 AAAACCGATCATACTTTCTGTTTCT 57.254 32.000 0.00 0.00 31.00 2.52
2645 11278 1.204146 AGGGCGTGAACATCAGGTAT 58.796 50.000 2.51 0.00 34.95 2.73
2777 11410 0.966370 CCGAGTCCGACTTCCTCCTT 60.966 60.000 1.71 0.00 38.22 3.36
2822 11455 2.202797 CCTGACATCGCCCTCGTG 60.203 66.667 0.00 0.00 36.96 4.35
2856 11501 0.616111 ATTCGGTCAGTCAGCCCTCT 60.616 55.000 0.00 0.00 0.00 3.69
2866 11511 0.543277 TCAGCCCTCTTGCACTATGG 59.457 55.000 0.00 0.00 0.00 2.74
2911 11556 6.939163 ACATTATAAGCAGGATCTAAGGCTTG 59.061 38.462 10.69 0.00 45.41 4.01
2916 11567 5.179452 AGCAGGATCTAAGGCTTGTTTTA 57.821 39.130 10.69 0.00 31.34 1.52
2919 11570 6.995091 AGCAGGATCTAAGGCTTGTTTTATAG 59.005 38.462 10.69 0.00 31.34 1.31
2920 11571 6.293680 GCAGGATCTAAGGCTTGTTTTATAGC 60.294 42.308 10.69 1.77 36.66 2.97
3028 11680 1.413077 GCTGGGTCCATAGTGTACTCC 59.587 57.143 0.00 0.00 0.00 3.85
3081 11803 9.750125 TCGGTTTCATCATATCATATATGTAGC 57.250 33.333 12.42 0.00 0.00 3.58
3082 11804 9.755804 CGGTTTCATCATATCATATATGTAGCT 57.244 33.333 12.42 0.00 0.00 3.32
3131 11853 3.301794 AAAAGGTTAAACCCGTGGTCT 57.698 42.857 0.00 0.00 39.75 3.85
3132 11854 2.556144 AAGGTTAAACCCGTGGTCTC 57.444 50.000 0.00 0.00 39.75 3.36
3133 11855 1.725803 AGGTTAAACCCGTGGTCTCT 58.274 50.000 0.00 0.00 39.75 3.10
3134 11856 2.893424 AGGTTAAACCCGTGGTCTCTA 58.107 47.619 0.00 0.00 39.75 2.43
3135 11857 2.564504 AGGTTAAACCCGTGGTCTCTAC 59.435 50.000 0.00 0.00 39.75 2.59
3136 11858 2.299867 GGTTAAACCCGTGGTCTCTACA 59.700 50.000 0.00 0.00 33.12 2.74
3137 11859 3.055602 GGTTAAACCCGTGGTCTCTACAT 60.056 47.826 0.00 0.00 33.12 2.29
3138 11860 4.179298 GTTAAACCCGTGGTCTCTACATC 58.821 47.826 0.00 0.00 33.12 3.06
3139 11861 1.933021 AACCCGTGGTCTCTACATCA 58.067 50.000 0.00 0.00 33.12 3.07
3140 11862 2.160721 ACCCGTGGTCTCTACATCAT 57.839 50.000 0.00 0.00 0.00 2.45
3141 11863 2.467880 ACCCGTGGTCTCTACATCATT 58.532 47.619 0.00 0.00 0.00 2.57
3142 11864 2.168521 ACCCGTGGTCTCTACATCATTG 59.831 50.000 0.00 0.00 0.00 2.82
3143 11865 2.168521 CCCGTGGTCTCTACATCATTGT 59.831 50.000 0.00 0.00 39.98 2.71
3144 11866 3.190079 CCGTGGTCTCTACATCATTGTG 58.810 50.000 0.00 0.00 36.53 3.33
3145 11867 3.119137 CCGTGGTCTCTACATCATTGTGA 60.119 47.826 0.00 0.00 36.53 3.58
3146 11868 4.442052 CCGTGGTCTCTACATCATTGTGAT 60.442 45.833 0.00 0.00 37.65 3.06
3162 11884 2.197283 TGATGCACACAACCATAGCA 57.803 45.000 0.00 0.00 39.79 3.49
3164 11886 3.627123 GTGATGCACACAACCATAGCATA 59.373 43.478 12.63 0.00 45.08 3.14
3165 11887 4.276678 GTGATGCACACAACCATAGCATAT 59.723 41.667 12.63 0.00 45.08 1.78
3166 11888 5.469760 GTGATGCACACAACCATAGCATATA 59.530 40.000 12.63 0.00 45.08 0.86
3167 11889 6.149973 GTGATGCACACAACCATAGCATATAT 59.850 38.462 12.63 0.00 45.08 0.86
3168 11890 7.334171 GTGATGCACACAACCATAGCATATATA 59.666 37.037 12.63 0.00 45.08 0.86
3169 11891 8.048514 TGATGCACACAACCATAGCATATATAT 58.951 33.333 0.00 0.00 45.08 0.86
3170 11892 9.546428 GATGCACACAACCATAGCATATATATA 57.454 33.333 0.00 0.00 45.08 0.86
3210 11932 4.844349 TTTTTGTTGGGGATTTGTTGGA 57.156 36.364 0.00 0.00 0.00 3.53
3211 11933 5.379706 TTTTTGTTGGGGATTTGTTGGAT 57.620 34.783 0.00 0.00 0.00 3.41
3212 11934 6.500589 TTTTTGTTGGGGATTTGTTGGATA 57.499 33.333 0.00 0.00 0.00 2.59
3213 11935 6.694445 TTTTGTTGGGGATTTGTTGGATAT 57.306 33.333 0.00 0.00 0.00 1.63
3214 11936 6.694445 TTTGTTGGGGATTTGTTGGATATT 57.306 33.333 0.00 0.00 0.00 1.28
3215 11937 6.694445 TTGTTGGGGATTTGTTGGATATTT 57.306 33.333 0.00 0.00 0.00 1.40
3216 11938 6.694445 TGTTGGGGATTTGTTGGATATTTT 57.306 33.333 0.00 0.00 0.00 1.82
3217 11939 7.798710 TGTTGGGGATTTGTTGGATATTTTA 57.201 32.000 0.00 0.00 0.00 1.52
3218 11940 8.207350 TGTTGGGGATTTGTTGGATATTTTAA 57.793 30.769 0.00 0.00 0.00 1.52
3219 11941 8.660435 TGTTGGGGATTTGTTGGATATTTTAAA 58.340 29.630 0.00 0.00 0.00 1.52
3246 11968 7.936496 TTACTCAAATATCCAAATGAGCACA 57.064 32.000 1.77 0.00 42.34 4.57
3267 11989 4.889409 ACATTGAGTGAGTGATTTGTTGGT 59.111 37.500 0.00 0.00 0.00 3.67
3271 11993 4.756642 TGAGTGAGTGATTTGTTGGTGATC 59.243 41.667 0.00 0.00 0.00 2.92
3296 12018 4.785453 CTTCCAGGGACAGCCGGC 62.785 72.222 21.89 21.89 33.83 6.13
3415 12137 2.159338 GGAAGTTCGTGTATGTAGGCGA 60.159 50.000 0.00 0.00 0.00 5.54
3416 12138 3.490419 GGAAGTTCGTGTATGTAGGCGAT 60.490 47.826 0.00 0.00 33.27 4.58
3429 12151 1.359848 AGGCGATGTCAAAGTAAGCG 58.640 50.000 0.00 0.00 0.00 4.68
3430 12152 1.067142 AGGCGATGTCAAAGTAAGCGA 60.067 47.619 0.00 0.00 0.00 4.93
3463 12193 7.744087 TGCTCTTTTATTTAGTTGCTTCTCA 57.256 32.000 0.00 0.00 0.00 3.27
3518 12266 1.816863 AACGATGCTCGGACCTGTGT 61.817 55.000 9.75 0.00 45.59 3.72
3790 12556 3.117776 TGGGAAGATTGCTGCTCATACAT 60.118 43.478 0.00 0.00 0.00 2.29
3901 12667 2.639839 ACTGTTATCACCCTCTGCAAGT 59.360 45.455 0.00 0.00 33.76 3.16
3948 14108 5.934043 CACACACCAAGATCAAATGAGAGTA 59.066 40.000 0.00 0.00 0.00 2.59
4363 14533 6.712179 TTCAAATAATGGCTGATATGTGCA 57.288 33.333 0.00 0.00 0.00 4.57
4396 14566 4.081972 TCAGGTACAACTGCTCAGAGATTC 60.082 45.833 0.00 0.00 38.36 2.52
4397 14567 3.196685 AGGTACAACTGCTCAGAGATTCC 59.803 47.826 0.00 1.49 0.00 3.01
4494 14664 3.053395 TCATTCAAGGCCTAGCATTCCTT 60.053 43.478 5.16 0.00 40.60 3.36
4503 14673 2.009774 CTAGCATTCCTTGTTGTCGGG 58.990 52.381 0.00 0.00 0.00 5.14
4545 14726 2.513666 CCCAGCGCCGAATAAGCA 60.514 61.111 2.29 0.00 0.00 3.91
4631 14824 3.254411 TCCTGCACATATCGATCTCAGAC 59.746 47.826 0.00 0.00 0.00 3.51
4666 14859 2.844348 AGAGAATTTTTCCTCGGCCCTA 59.156 45.455 0.00 0.00 34.75 3.53
4736 14933 6.121590 TCAAAATTGCATGGTAGCTCATCTA 58.878 36.000 0.00 0.00 34.99 1.98
4740 14937 7.918536 AATTGCATGGTAGCTCATCTAATAG 57.081 36.000 0.00 0.00 34.99 1.73
4744 14941 7.962441 TGCATGGTAGCTCATCTAATAGTAAA 58.038 34.615 0.00 0.00 34.99 2.01
4856 15102 7.103641 TGTCAATTACTTACAGTGATTCTCCC 58.896 38.462 0.00 0.00 32.90 4.30
4897 15143 8.129840 ACTGTACTTACTGATGTAGCTTATTCG 58.870 37.037 0.00 0.00 0.00 3.34
4941 15190 1.010580 TGCGGTTGTGTTGTGTAGTG 58.989 50.000 0.00 0.00 0.00 2.74
4958 15207 6.183360 TGTGTAGTGGGACAAAACATGTAAAC 60.183 38.462 0.00 0.00 44.12 2.01
5040 15315 8.268738 GCAGTAACAAAAATTCAGACAAATGTC 58.731 33.333 5.40 5.40 45.08 3.06
5072 15349 5.300969 TCAAATTCAGACATGTAGCTTGC 57.699 39.130 0.00 0.00 0.00 4.01
5073 15350 4.761227 TCAAATTCAGACATGTAGCTTGCA 59.239 37.500 0.00 0.00 0.00 4.08
5075 15352 4.959596 ATTCAGACATGTAGCTTGCAAG 57.040 40.909 22.44 22.44 0.00 4.01
5104 15383 9.197306 AGGAATATTTGTGGTATAACTTTTCCC 57.803 33.333 0.00 0.00 0.00 3.97
5105 15384 9.197306 GGAATATTTGTGGTATAACTTTTCCCT 57.803 33.333 0.00 0.00 0.00 4.20
5110 15393 6.057321 TGTGGTATAACTTTTCCCTTCGAT 57.943 37.500 0.00 0.00 0.00 3.59
5133 15416 2.068821 GGCAGAGGAGGGAGATGCA 61.069 63.158 0.00 0.00 38.63 3.96
5137 15420 1.301558 GAGGAGGGAGATGCATGCG 60.302 63.158 14.09 0.00 0.00 4.73
5167 16398 1.330234 TTATATGCGCGGGGTAGACA 58.670 50.000 8.83 0.00 0.00 3.41
5191 16422 0.663153 GTCAGTGCTTTGCCGAGTTT 59.337 50.000 0.00 0.00 0.00 2.66
5210 16441 4.283722 AGTTTGGAACTCGACATAGGAAGT 59.716 41.667 0.00 0.00 37.02 3.01
5214 16445 3.429135 GGAACTCGACATAGGAAGTCCAC 60.429 52.174 0.00 0.00 38.89 4.02
5238 16469 0.741574 CCAATAGCCGTTGCCACGTA 60.742 55.000 9.67 0.00 45.62 3.57
5262 16493 2.443390 GGGCCCGTCTGCTAGGTA 60.443 66.667 5.69 0.00 0.00 3.08
5265 16496 1.335145 GGCCCGTCTGCTAGGTATTA 58.665 55.000 0.00 0.00 0.00 0.98
5302 16535 0.028242 GAGCTCGACATCGACGTGAT 59.972 55.000 0.00 0.00 44.22 3.06
5399 16634 4.803426 CCGCCCTCACGTCTCTGC 62.803 72.222 0.00 0.00 0.00 4.26
5413 16648 0.244994 CTCTGCTGCCTAGTCGTTGT 59.755 55.000 0.00 0.00 0.00 3.32
5418 16653 0.320374 CTGCCTAGTCGTTGTTGGGA 59.680 55.000 0.00 0.00 0.00 4.37
5452 16687 1.336887 GCACTGCCTACTTTCTGACGA 60.337 52.381 0.00 0.00 0.00 4.20
5482 16717 1.413767 GCGAATGTGCGACATCGTCT 61.414 55.000 2.85 0.22 37.97 4.18
5506 16741 0.178973 TCTCCTTGTCACCGAGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
5539 16774 4.675510 CACTGGGCACACATTGATATTTC 58.324 43.478 0.00 0.00 0.00 2.17
5563 16798 3.728845 GAGTTTTGTGGCACTACAGAGA 58.271 45.455 19.83 0.00 0.00 3.10
5564 16799 3.733337 AGTTTTGTGGCACTACAGAGAG 58.267 45.455 19.83 0.00 0.00 3.20
5573 16808 5.239525 GTGGCACTACAGAGAGTTCAATTTT 59.760 40.000 11.13 0.00 0.00 1.82
5575 16810 5.106515 GGCACTACAGAGAGTTCAATTTTCC 60.107 44.000 0.00 0.00 0.00 3.13
5581 16816 5.592688 ACAGAGAGTTCAATTTTCCGGAAAA 59.407 36.000 37.16 37.16 43.48 2.29
5596 16831 1.200020 GGAAAATCGGCAGACACCTTG 59.800 52.381 0.00 0.00 0.00 3.61
5649 16884 2.639065 GAACCATGGAAACTCGGCATA 58.361 47.619 21.47 0.00 0.00 3.14
5650 16885 2.332063 ACCATGGAAACTCGGCATAG 57.668 50.000 21.47 0.00 0.00 2.23
5652 16887 1.134098 CCATGGAAACTCGGCATAGGT 60.134 52.381 5.56 0.00 0.00 3.08
5653 16888 1.942657 CATGGAAACTCGGCATAGGTG 59.057 52.381 0.00 0.00 0.00 4.00
5678 16913 5.743872 GCGATTCCAGTAATGGTTTGATTTC 59.256 40.000 9.41 0.00 0.00 2.17
5680 16915 7.483307 CGATTCCAGTAATGGTTTGATTTCAT 58.517 34.615 9.41 0.00 0.00 2.57
5683 16918 8.830201 TTCCAGTAATGGTTTGATTTCATTTG 57.170 30.769 9.41 0.00 33.72 2.32
5751 16987 5.883503 TTTTTGTGTTTGTAGACGGAACT 57.116 34.783 0.00 0.00 0.00 3.01
5752 16988 5.883503 TTTTGTGTTTGTAGACGGAACTT 57.116 34.783 0.00 0.00 0.00 2.66
5753 16989 5.883503 TTTGTGTTTGTAGACGGAACTTT 57.116 34.783 0.00 0.00 0.00 2.66
5754 16990 5.883503 TTGTGTTTGTAGACGGAACTTTT 57.116 34.783 0.00 0.00 0.00 2.27
5755 16991 5.224562 TGTGTTTGTAGACGGAACTTTTG 57.775 39.130 0.00 0.00 0.00 2.44
5756 16992 4.696402 TGTGTTTGTAGACGGAACTTTTGT 59.304 37.500 0.00 0.00 0.00 2.83
5757 16993 5.025826 GTGTTTGTAGACGGAACTTTTGTG 58.974 41.667 0.00 0.00 0.00 3.33
5758 16994 4.936411 TGTTTGTAGACGGAACTTTTGTGA 59.064 37.500 0.00 0.00 0.00 3.58
5759 16995 5.411977 TGTTTGTAGACGGAACTTTTGTGAA 59.588 36.000 0.00 0.00 0.00 3.18
5760 16996 5.728351 TTGTAGACGGAACTTTTGTGAAG 57.272 39.130 0.00 0.00 0.00 3.02
5761 16997 4.761975 TGTAGACGGAACTTTTGTGAAGT 58.238 39.130 0.00 0.00 0.00 3.01
5762 16998 4.807304 TGTAGACGGAACTTTTGTGAAGTC 59.193 41.667 0.00 0.00 33.18 3.01
5763 16999 4.138487 AGACGGAACTTTTGTGAAGTCT 57.862 40.909 0.00 0.00 36.16 3.24
5764 17000 3.871594 AGACGGAACTTTTGTGAAGTCTG 59.128 43.478 0.00 0.00 38.01 3.51
5765 17001 2.943033 ACGGAACTTTTGTGAAGTCTGG 59.057 45.455 0.00 0.00 0.00 3.86
5766 17002 2.290641 CGGAACTTTTGTGAAGTCTGGG 59.709 50.000 0.00 0.00 0.00 4.45
5767 17003 2.034685 GGAACTTTTGTGAAGTCTGGGC 59.965 50.000 0.00 0.00 0.00 5.36
5768 17004 2.435372 ACTTTTGTGAAGTCTGGGCA 57.565 45.000 0.00 0.00 0.00 5.36
5769 17005 2.733956 ACTTTTGTGAAGTCTGGGCAA 58.266 42.857 0.00 0.00 0.00 4.52
5770 17006 3.096092 ACTTTTGTGAAGTCTGGGCAAA 58.904 40.909 0.00 0.00 0.00 3.68
5771 17007 3.119137 ACTTTTGTGAAGTCTGGGCAAAC 60.119 43.478 0.00 0.00 0.00 2.93
5772 17008 2.435372 TTGTGAAGTCTGGGCAAACT 57.565 45.000 0.00 0.00 0.00 2.66
5773 17009 2.435372 TGTGAAGTCTGGGCAAACTT 57.565 45.000 0.00 0.00 38.40 2.66
5774 17010 2.023673 TGTGAAGTCTGGGCAAACTTG 58.976 47.619 3.54 0.00 35.90 3.16
5775 17011 2.297701 GTGAAGTCTGGGCAAACTTGA 58.702 47.619 3.54 0.00 35.90 3.02
5776 17012 2.291741 GTGAAGTCTGGGCAAACTTGAG 59.708 50.000 3.54 0.00 35.90 3.02
5777 17013 1.882623 GAAGTCTGGGCAAACTTGAGG 59.117 52.381 3.54 0.00 35.90 3.86
5778 17014 0.538287 AGTCTGGGCAAACTTGAGGC 60.538 55.000 0.00 0.00 0.00 4.70
5782 17018 3.267974 GGCAAACTTGAGGCCGAG 58.732 61.111 0.00 0.00 38.04 4.63
5783 17019 1.600916 GGCAAACTTGAGGCCGAGT 60.601 57.895 0.00 0.00 38.66 4.18
5784 17020 1.576421 GCAAACTTGAGGCCGAGTG 59.424 57.895 9.73 0.00 37.12 3.51
5785 17021 1.576421 CAAACTTGAGGCCGAGTGC 59.424 57.895 9.73 0.00 37.12 4.40
5794 17030 3.490890 GCCGAGTGCCTAAGCTTG 58.509 61.111 9.86 0.00 40.80 4.01
5795 17031 1.079127 GCCGAGTGCCTAAGCTTGA 60.079 57.895 9.86 0.00 40.80 3.02
5796 17032 0.673644 GCCGAGTGCCTAAGCTTGAA 60.674 55.000 9.86 0.00 40.80 2.69
5797 17033 1.808411 CCGAGTGCCTAAGCTTGAAA 58.192 50.000 9.86 0.00 40.80 2.69
5798 17034 2.359900 CCGAGTGCCTAAGCTTGAAAT 58.640 47.619 9.86 0.00 40.80 2.17
5799 17035 2.352960 CCGAGTGCCTAAGCTTGAAATC 59.647 50.000 9.86 0.00 40.80 2.17
5800 17036 2.029728 CGAGTGCCTAAGCTTGAAATCG 59.970 50.000 9.86 4.64 40.80 3.34
5801 17037 2.352960 GAGTGCCTAAGCTTGAAATCGG 59.647 50.000 9.86 1.09 40.80 4.18
5802 17038 2.027192 AGTGCCTAAGCTTGAAATCGGA 60.027 45.455 9.86 0.00 40.80 4.55
5803 17039 2.747446 GTGCCTAAGCTTGAAATCGGAA 59.253 45.455 9.86 0.00 40.80 4.30
5804 17040 3.378427 GTGCCTAAGCTTGAAATCGGAAT 59.622 43.478 9.86 0.00 40.80 3.01
5805 17041 3.627577 TGCCTAAGCTTGAAATCGGAATC 59.372 43.478 9.86 0.00 40.80 2.52
5806 17042 3.627577 GCCTAAGCTTGAAATCGGAATCA 59.372 43.478 9.86 0.00 35.50 2.57
5807 17043 4.260948 GCCTAAGCTTGAAATCGGAATCAG 60.261 45.833 9.86 0.00 35.50 2.90
5808 17044 4.274459 CCTAAGCTTGAAATCGGAATCAGG 59.726 45.833 9.86 0.00 0.00 3.86
5809 17045 3.356529 AGCTTGAAATCGGAATCAGGT 57.643 42.857 7.69 2.42 0.00 4.00
5810 17046 3.012518 AGCTTGAAATCGGAATCAGGTG 58.987 45.455 7.69 1.44 0.00 4.00
5811 17047 2.749621 GCTTGAAATCGGAATCAGGTGT 59.250 45.455 7.69 0.00 0.00 4.16
5812 17048 3.191371 GCTTGAAATCGGAATCAGGTGTT 59.809 43.478 7.69 0.00 0.00 3.32
5813 17049 4.672801 GCTTGAAATCGGAATCAGGTGTTC 60.673 45.833 7.69 0.00 0.00 3.18
5814 17050 3.000041 TGAAATCGGAATCAGGTGTTCG 59.000 45.455 0.00 0.00 0.00 3.95
5815 17051 3.259064 GAAATCGGAATCAGGTGTTCGA 58.741 45.455 0.00 0.00 0.00 3.71
5816 17052 3.328382 AATCGGAATCAGGTGTTCGAA 57.672 42.857 0.00 0.00 0.00 3.71
5817 17053 3.543680 ATCGGAATCAGGTGTTCGAAT 57.456 42.857 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.096984 CACAGAGATTTTCAGGGTATTGCC 59.903 45.833 0.00 0.00 0.00 4.52
5 6 4.943705 TCACAGAGATTTTCAGGGTATTGC 59.056 41.667 0.00 0.00 0.00 3.56
6 7 6.825213 TCATCACAGAGATTTTCAGGGTATTG 59.175 38.462 0.00 0.00 33.72 1.90
7 8 6.825721 GTCATCACAGAGATTTTCAGGGTATT 59.174 38.462 0.00 0.00 33.72 1.89
8 9 6.157645 AGTCATCACAGAGATTTTCAGGGTAT 59.842 38.462 0.00 0.00 33.72 2.73
9 10 5.485353 AGTCATCACAGAGATTTTCAGGGTA 59.515 40.000 0.00 0.00 33.72 3.69
10 11 4.288105 AGTCATCACAGAGATTTTCAGGGT 59.712 41.667 0.00 0.00 33.72 4.34
11 12 4.841422 AGTCATCACAGAGATTTTCAGGG 58.159 43.478 0.00 0.00 33.72 4.45
12 13 6.429078 TCAAAGTCATCACAGAGATTTTCAGG 59.571 38.462 0.00 0.00 33.72 3.86
13 14 7.172875 AGTCAAAGTCATCACAGAGATTTTCAG 59.827 37.037 0.00 0.00 33.72 3.02
14 15 6.994496 AGTCAAAGTCATCACAGAGATTTTCA 59.006 34.615 0.00 0.00 33.72 2.69
15 16 7.296660 CAGTCAAAGTCATCACAGAGATTTTC 58.703 38.462 0.00 0.00 33.72 2.29
16 17 6.293845 GCAGTCAAAGTCATCACAGAGATTTT 60.294 38.462 0.00 0.00 33.72 1.82
17 18 5.180868 GCAGTCAAAGTCATCACAGAGATTT 59.819 40.000 0.00 0.00 33.72 2.17
18 19 4.694509 GCAGTCAAAGTCATCACAGAGATT 59.305 41.667 0.00 0.00 33.72 2.40
19 20 4.252073 GCAGTCAAAGTCATCACAGAGAT 58.748 43.478 0.00 0.00 37.48 2.75
20 21 3.555795 GGCAGTCAAAGTCATCACAGAGA 60.556 47.826 0.00 0.00 0.00 3.10
21 22 2.740981 GGCAGTCAAAGTCATCACAGAG 59.259 50.000 0.00 0.00 0.00 3.35
22 23 2.104622 TGGCAGTCAAAGTCATCACAGA 59.895 45.455 0.00 0.00 0.00 3.41
23 24 2.483106 CTGGCAGTCAAAGTCATCACAG 59.517 50.000 6.28 0.00 0.00 3.66
24 25 2.497138 CTGGCAGTCAAAGTCATCACA 58.503 47.619 6.28 0.00 0.00 3.58
25 26 1.198637 GCTGGCAGTCAAAGTCATCAC 59.801 52.381 17.16 0.00 0.00 3.06
26 27 1.072806 AGCTGGCAGTCAAAGTCATCA 59.927 47.619 17.16 0.00 0.00 3.07
27 28 1.467734 CAGCTGGCAGTCAAAGTCATC 59.532 52.381 17.16 0.00 0.00 2.92
28 29 1.202855 ACAGCTGGCAGTCAAAGTCAT 60.203 47.619 19.93 0.00 0.00 3.06
29 30 0.181114 ACAGCTGGCAGTCAAAGTCA 59.819 50.000 19.93 0.00 0.00 3.41
30 31 2.169832 TACAGCTGGCAGTCAAAGTC 57.830 50.000 19.93 0.00 0.00 3.01
31 32 2.816087 CAATACAGCTGGCAGTCAAAGT 59.184 45.455 19.93 9.99 0.00 2.66
32 33 2.816087 ACAATACAGCTGGCAGTCAAAG 59.184 45.455 19.93 4.47 0.00 2.77
33 34 2.553602 CACAATACAGCTGGCAGTCAAA 59.446 45.455 19.93 0.14 0.00 2.69
34 35 2.153645 CACAATACAGCTGGCAGTCAA 58.846 47.619 19.93 0.00 0.00 3.18
35 36 1.072173 ACACAATACAGCTGGCAGTCA 59.928 47.619 19.93 0.00 0.00 3.41
36 37 1.466167 CACACAATACAGCTGGCAGTC 59.534 52.381 19.93 8.57 0.00 3.51
37 38 1.072173 TCACACAATACAGCTGGCAGT 59.928 47.619 19.93 8.08 0.00 4.40
38 39 1.812235 TCACACAATACAGCTGGCAG 58.188 50.000 19.93 10.94 0.00 4.85
39 40 2.268762 TTCACACAATACAGCTGGCA 57.731 45.000 19.93 5.62 0.00 4.92
40 41 3.855689 ATTTCACACAATACAGCTGGC 57.144 42.857 19.93 0.00 0.00 4.85
41 42 4.637534 AGCTATTTCACACAATACAGCTGG 59.362 41.667 19.93 1.96 0.00 4.85
42 43 5.566623 CAGCTATTTCACACAATACAGCTG 58.433 41.667 13.48 13.48 34.32 4.24
43 44 4.095483 GCAGCTATTTCACACAATACAGCT 59.905 41.667 0.00 0.00 0.00 4.24
44 45 4.346129 GCAGCTATTTCACACAATACAGC 58.654 43.478 0.00 0.00 0.00 4.40
45 46 4.093408 ACGCAGCTATTTCACACAATACAG 59.907 41.667 0.00 0.00 0.00 2.74
59 60 1.078426 GTGTCCCCAACGCAGCTAT 60.078 57.895 0.00 0.00 38.31 2.97
67 68 2.227194 ACGAAAATCTGTGTCCCCAAC 58.773 47.619 0.00 0.00 0.00 3.77
91 92 5.500234 TGTCCATCCTTCAATTTCCTACAG 58.500 41.667 0.00 0.00 0.00 2.74
94 95 5.951747 CCTTTGTCCATCCTTCAATTTCCTA 59.048 40.000 0.00 0.00 0.00 2.94
128 129 3.871485 AGTTGAATCTGCACCTGATCTC 58.129 45.455 0.00 0.00 0.00 2.75
150 151 7.606456 AGAGCGGTCACTAATTAAAATCAAGAA 59.394 33.333 18.15 0.00 0.00 2.52
152 153 7.148407 ACAGAGCGGTCACTAATTAAAATCAAG 60.148 37.037 18.15 0.00 0.00 3.02
167 168 0.608130 AGCAATACACAGAGCGGTCA 59.392 50.000 18.15 0.00 0.00 4.02
168 169 1.002366 CAGCAATACACAGAGCGGTC 58.998 55.000 6.48 6.48 0.00 4.79
170 171 1.284657 CTCAGCAATACACAGAGCGG 58.715 55.000 0.00 0.00 0.00 5.52
179 180 5.924475 AAATATACGTGGCTCAGCAATAC 57.076 39.130 0.00 0.00 0.00 1.89
185 186 5.545658 AACACAAAATATACGTGGCTCAG 57.454 39.130 0.00 0.00 34.91 3.35
250 251 1.745232 TTCGGTCAAACTGCTTGTGT 58.255 45.000 0.00 0.00 36.34 3.72
285 286 2.745821 GTTAAACCTGAATCGGGTGGAC 59.254 50.000 15.48 9.93 43.15 4.02
288 289 3.365969 GCTTGTTAAACCTGAATCGGGTG 60.366 47.826 15.48 1.22 43.15 4.61
289 290 2.817844 GCTTGTTAAACCTGAATCGGGT 59.182 45.455 8.18 8.18 46.37 5.28
335 336 2.094762 AACCTCATTTTCGTCCTCGG 57.905 50.000 0.00 0.00 37.69 4.63
336 337 3.250040 ACAAAACCTCATTTTCGTCCTCG 59.750 43.478 0.00 0.00 38.50 4.63
338 339 6.894339 ATTACAAAACCTCATTTTCGTCCT 57.106 33.333 0.00 0.00 38.50 3.85
359 360 7.213216 TGGTTGCACATATATATGCGAAATT 57.787 32.000 20.46 0.00 45.13 1.82
397 398 5.937540 TCACAAGTCTGAAGAGTTTGTTCAA 59.062 36.000 7.18 0.00 35.65 2.69
421 422 9.312904 TCCTTTGGATTTATCTTCAAGAAATGT 57.687 29.630 0.00 0.00 0.00 2.71
444 445 4.080299 GTCCCAACACTGATAAATCCTCCT 60.080 45.833 0.00 0.00 0.00 3.69
460 461 5.148651 TCAGCTAAAACTCTAGTCCCAAC 57.851 43.478 0.00 0.00 0.00 3.77
530 531 7.847166 ACGCCGCTAAAAATAAAAATATAGC 57.153 32.000 0.00 0.00 34.02 2.97
548 549 0.947180 TGTCCTTCAGTAAACGCCGC 60.947 55.000 0.00 0.00 0.00 6.53
549 550 1.722011 ATGTCCTTCAGTAAACGCCG 58.278 50.000 0.00 0.00 0.00 6.46
572 573 8.887717 GCAGATAGGCATCACTTATTAATTAGG 58.112 37.037 6.44 0.00 33.21 2.69
573 574 9.664332 AGCAGATAGGCATCACTTATTAATTAG 57.336 33.333 0.00 0.00 35.83 1.73
575 576 8.930846 AAGCAGATAGGCATCACTTATTAATT 57.069 30.769 0.00 0.00 31.60 1.40
576 577 8.159447 TGAAGCAGATAGGCATCACTTATTAAT 58.841 33.333 0.00 0.00 36.67 1.40
587 3113 2.406559 AGAGGTGAAGCAGATAGGCAT 58.593 47.619 0.00 0.00 35.83 4.40
611 3137 6.594937 ACAAATTTGTATTCATCATTGGGCAC 59.405 34.615 22.10 0.00 40.16 5.01
744 3569 3.922171 AGCTAGGATGGACAAAGGAAG 57.078 47.619 0.00 0.00 0.00 3.46
745 3570 4.362677 AGTAGCTAGGATGGACAAAGGAA 58.637 43.478 0.00 0.00 0.00 3.36
746 3571 3.995636 AGTAGCTAGGATGGACAAAGGA 58.004 45.455 0.00 0.00 0.00 3.36
747 3572 4.446371 CAAGTAGCTAGGATGGACAAAGG 58.554 47.826 0.00 0.00 0.00 3.11
750 3575 2.170607 GCCAAGTAGCTAGGATGGACAA 59.829 50.000 18.86 0.00 32.82 3.18
751 3576 1.762957 GCCAAGTAGCTAGGATGGACA 59.237 52.381 18.86 0.00 32.82 4.02
752 3577 1.070914 GGCCAAGTAGCTAGGATGGAC 59.929 57.143 18.86 14.22 32.82 4.02
753 3578 1.062121 AGGCCAAGTAGCTAGGATGGA 60.062 52.381 18.86 0.00 32.82 3.41
754 3579 1.071385 CAGGCCAAGTAGCTAGGATGG 59.929 57.143 5.01 12.83 0.00 3.51
755 3580 1.765314 ACAGGCCAAGTAGCTAGGATG 59.235 52.381 5.01 0.00 0.00 3.51
756 3581 2.182516 ACAGGCCAAGTAGCTAGGAT 57.817 50.000 5.01 0.00 0.00 3.24
757 3582 2.840640 TACAGGCCAAGTAGCTAGGA 57.159 50.000 5.01 0.00 0.00 2.94
758 3583 2.548920 GCATACAGGCCAAGTAGCTAGG 60.549 54.545 5.01 0.00 0.00 3.02
759 3584 2.760374 GCATACAGGCCAAGTAGCTAG 58.240 52.381 5.01 1.09 0.00 3.42
760 3585 1.068588 CGCATACAGGCCAAGTAGCTA 59.931 52.381 5.01 0.00 0.00 3.32
761 3586 0.179073 CGCATACAGGCCAAGTAGCT 60.179 55.000 5.01 0.00 0.00 3.32
762 3587 1.160329 CCGCATACAGGCCAAGTAGC 61.160 60.000 5.01 11.61 0.00 3.58
792 3623 0.469144 GCTAGGAGCCTAGGAGCACT 60.469 60.000 21.70 6.94 44.48 4.40
802 3633 2.624364 GTGGAAGTAGTAGCTAGGAGCC 59.376 54.545 0.00 0.00 43.77 4.70
803 3634 3.067040 GTGTGGAAGTAGTAGCTAGGAGC 59.933 52.174 0.00 0.00 42.84 4.70
804 3635 4.528920 AGTGTGGAAGTAGTAGCTAGGAG 58.471 47.826 0.00 0.00 0.00 3.69
805 3636 4.018688 TGAGTGTGGAAGTAGTAGCTAGGA 60.019 45.833 0.00 0.00 0.00 2.94
806 3637 4.096682 GTGAGTGTGGAAGTAGTAGCTAGG 59.903 50.000 0.00 0.00 0.00 3.02
807 3638 4.700692 TGTGAGTGTGGAAGTAGTAGCTAG 59.299 45.833 0.00 0.00 0.00 3.42
808 3639 4.659115 TGTGAGTGTGGAAGTAGTAGCTA 58.341 43.478 0.00 0.00 0.00 3.32
809 3640 3.497332 TGTGAGTGTGGAAGTAGTAGCT 58.503 45.455 0.00 0.00 0.00 3.32
810 3641 3.367498 CCTGTGAGTGTGGAAGTAGTAGC 60.367 52.174 0.00 0.00 0.00 3.58
811 3642 3.827302 ACCTGTGAGTGTGGAAGTAGTAG 59.173 47.826 0.00 0.00 0.00 2.57
812 3643 3.572682 CACCTGTGAGTGTGGAAGTAGTA 59.427 47.826 0.00 0.00 32.89 1.82
813 3644 2.365617 CACCTGTGAGTGTGGAAGTAGT 59.634 50.000 0.00 0.00 32.89 2.73
886 3721 1.074775 GGTCATCTGGTGGTTGGCA 59.925 57.895 0.00 0.00 0.00 4.92
943 3778 0.475475 TGTGGATGGATGGAGGATGC 59.525 55.000 0.00 0.00 0.00 3.91
944 3779 1.773052 AGTGTGGATGGATGGAGGATG 59.227 52.381 0.00 0.00 0.00 3.51
945 3780 2.203120 AGTGTGGATGGATGGAGGAT 57.797 50.000 0.00 0.00 0.00 3.24
946 3781 2.866923 TAGTGTGGATGGATGGAGGA 57.133 50.000 0.00 0.00 0.00 3.71
987 3834 1.133761 ACGACTGGCTAGGCTAGATGA 60.134 52.381 25.37 6.57 39.54 2.92
1210 4098 1.820906 CATCACGGTCATGGCCAGG 60.821 63.158 18.31 12.23 0.00 4.45
1470 4397 4.234574 GGTCAAACCAAAATCGATCAACC 58.765 43.478 0.00 0.00 38.42 3.77
1564 4492 1.210478 ACCTTCACTCATTCCATCCGG 59.790 52.381 0.00 0.00 0.00 5.14
1577 4530 3.188159 TGACACCTTGTACACCTTCAC 57.812 47.619 0.00 0.00 0.00 3.18
1636 4589 1.065199 TCAAGCACCTGGATCACCATC 60.065 52.381 0.00 0.00 45.87 3.51
1722 4685 0.802607 GTACGTGCTGCCTGCTAGAC 60.803 60.000 0.00 0.00 43.37 2.59
1736 4775 7.592885 ACCCATAATACAAGAGTATGTACGT 57.407 36.000 0.00 0.00 40.00 3.57
1769 4847 2.546368 AGTACGAACGCAAATTGCAAGA 59.454 40.909 18.65 0.00 45.36 3.02
1820 4898 7.989947 ATGGAGGGAGTAGTAATCTAAAACA 57.010 36.000 0.00 0.00 0.00 2.83
1825 4903 9.947189 TTTAGAAATGGAGGGAGTAGTAATCTA 57.053 33.333 0.00 0.00 0.00 1.98
1826 4904 8.855804 TTTAGAAATGGAGGGAGTAGTAATCT 57.144 34.615 0.00 0.00 0.00 2.40
1831 4909 9.853177 CAAATATTTAGAAATGGAGGGAGTAGT 57.147 33.333 0.00 0.00 0.00 2.73
1832 4910 9.853177 ACAAATATTTAGAAATGGAGGGAGTAG 57.147 33.333 0.00 0.00 0.00 2.57
1855 4933 9.787532 CACTTGTTGAAATCTCTAGAAAAACAA 57.212 29.630 0.00 4.48 35.60 2.83
1856 4934 9.173021 TCACTTGTTGAAATCTCTAGAAAAACA 57.827 29.630 0.00 0.00 0.00 2.83
1863 4941 7.439356 TGTCAAGTCACTTGTTGAAATCTCTAG 59.561 37.037 17.27 0.00 41.66 2.43
1876 4954 5.651172 TTCGTATGTTGTCAAGTCACTTG 57.349 39.130 11.69 11.69 42.25 3.16
1878 4956 3.741344 GCTTCGTATGTTGTCAAGTCACT 59.259 43.478 0.00 0.00 0.00 3.41
1879 4957 3.493129 TGCTTCGTATGTTGTCAAGTCAC 59.507 43.478 0.00 0.00 0.00 3.67
1880 4958 3.723260 TGCTTCGTATGTTGTCAAGTCA 58.277 40.909 0.00 0.00 0.00 3.41
1883 4961 6.142139 TCATTTTGCTTCGTATGTTGTCAAG 58.858 36.000 0.00 0.00 0.00 3.02
1884 4962 6.066054 TCATTTTGCTTCGTATGTTGTCAA 57.934 33.333 0.00 0.00 0.00 3.18
1886 4964 5.565259 CACTCATTTTGCTTCGTATGTTGTC 59.435 40.000 0.00 0.00 0.00 3.18
1887 4965 5.238432 TCACTCATTTTGCTTCGTATGTTGT 59.762 36.000 0.00 0.00 0.00 3.32
1888 4966 5.688823 TCACTCATTTTGCTTCGTATGTTG 58.311 37.500 0.00 0.00 0.00 3.33
1890 4968 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
1949 5029 7.843490 TTTAGAGATTTCAAATGGACTACCG 57.157 36.000 0.00 0.00 39.42 4.02
1953 5033 7.944554 TGTCCTTTTAGAGATTTCAAATGGACT 59.055 33.333 25.02 1.39 46.43 3.85
1954 5034 8.110860 TGTCCTTTTAGAGATTTCAAATGGAC 57.889 34.615 22.10 22.10 46.45 4.02
1955 5035 8.704849 TTGTCCTTTTAGAGATTTCAAATGGA 57.295 30.769 0.00 9.53 34.75 3.41
1956 5036 9.933723 ATTTGTCCTTTTAGAGATTTCAAATGG 57.066 29.630 0.00 0.00 33.66 3.16
1977 5058 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
1994 5093 8.795513 GGTTAGATCACTACTTTATACTCCCTC 58.204 40.741 0.00 0.00 0.00 4.30
1999 5098 9.696572 TCACAGGTTAGATCACTACTTTATACT 57.303 33.333 0.00 0.00 0.00 2.12
2081 5995 2.833338 ACATGCATGTTATTGGCCAGTT 59.167 40.909 26.61 0.00 37.90 3.16
2083 5997 2.816689 CACATGCATGTTATTGGCCAG 58.183 47.619 29.48 11.33 39.39 4.85
2119 6573 3.331889 AGAATCTGGGAACATGTTCTGGT 59.668 43.478 31.81 18.63 40.37 4.00
2270 6804 3.895025 GCATTTCTGCGAGGCTCA 58.105 55.556 15.95 0.00 38.92 4.26
2332 8797 4.938080 AGCACTACTCGACAATATTGGAG 58.062 43.478 19.37 17.43 0.00 3.86
2390 8884 7.201182 CGAACTTAAACATGCTTGATTTTCGAG 60.201 37.037 16.20 8.51 0.00 4.04
2443 11015 3.074412 ACAATGAGGCTACAACTTTCCG 58.926 45.455 0.00 0.00 0.00 4.30
2444 11016 4.072131 TGACAATGAGGCTACAACTTTCC 58.928 43.478 0.00 0.00 0.00 3.13
2445 11017 4.757149 ACTGACAATGAGGCTACAACTTTC 59.243 41.667 0.00 0.00 0.00 2.62
2447 11019 4.067896 CACTGACAATGAGGCTACAACTT 58.932 43.478 0.00 0.00 0.00 2.66
2448 11020 3.557898 CCACTGACAATGAGGCTACAACT 60.558 47.826 0.00 0.00 0.00 3.16
2449 11021 2.744202 CCACTGACAATGAGGCTACAAC 59.256 50.000 0.00 0.00 0.00 3.32
2450 11022 2.371841 ACCACTGACAATGAGGCTACAA 59.628 45.455 0.00 0.00 0.00 2.41
2453 11025 3.708451 TCTACCACTGACAATGAGGCTA 58.292 45.455 0.00 0.00 0.00 3.93
2454 11026 2.540383 TCTACCACTGACAATGAGGCT 58.460 47.619 0.00 0.00 0.00 4.58
2455 11027 3.201290 CATCTACCACTGACAATGAGGC 58.799 50.000 0.00 0.00 0.00 4.70
2456 11028 3.201290 GCATCTACCACTGACAATGAGG 58.799 50.000 0.00 0.00 0.00 3.86
2457 11029 3.865446 TGCATCTACCACTGACAATGAG 58.135 45.455 0.00 0.00 0.00 2.90
2458 11030 3.261643 ACTGCATCTACCACTGACAATGA 59.738 43.478 0.00 0.00 0.00 2.57
2459 11031 3.603532 ACTGCATCTACCACTGACAATG 58.396 45.455 0.00 0.00 0.00 2.82
2463 11035 2.668457 CGAAACTGCATCTACCACTGAC 59.332 50.000 0.00 0.00 0.00 3.51
2466 11038 3.678056 TTCGAAACTGCATCTACCACT 57.322 42.857 0.00 0.00 0.00 4.00
2467 11039 3.746492 ACTTTCGAAACTGCATCTACCAC 59.254 43.478 6.47 0.00 0.00 4.16
2468 11040 3.994392 GACTTTCGAAACTGCATCTACCA 59.006 43.478 6.47 0.00 0.00 3.25
2645 11278 0.539669 TGCGGTTCTCTCTGACCTCA 60.540 55.000 0.00 0.00 0.00 3.86
2777 11410 3.951769 GAGGAAGGGGACGGTCCGA 62.952 68.421 20.51 0.00 42.40 4.55
2822 11455 0.371645 CGAATTTCCAGCGAGTCTGC 59.628 55.000 0.00 0.00 41.50 4.26
2856 11501 7.655521 ACAGTAGTATAAGACCATAGTGCAA 57.344 36.000 0.00 0.00 0.00 4.08
2888 11533 7.084268 ACAAGCCTTAGATCCTGCTTATAAT 57.916 36.000 7.90 0.00 41.83 1.28
2911 11556 7.463469 AACTGCACAACAAAAGCTATAAAAC 57.537 32.000 0.00 0.00 0.00 2.43
2916 11567 6.582295 CGAATTAACTGCACAACAAAAGCTAT 59.418 34.615 0.00 0.00 0.00 2.97
2919 11570 4.085107 CCGAATTAACTGCACAACAAAAGC 60.085 41.667 0.00 0.00 0.00 3.51
2920 11571 5.277825 TCCGAATTAACTGCACAACAAAAG 58.722 37.500 0.00 0.00 0.00 2.27
3110 11832 3.633525 GAGACCACGGGTTTAACCTTTTT 59.366 43.478 14.27 0.00 38.64 1.94
3111 11833 3.117776 AGAGACCACGGGTTTAACCTTTT 60.118 43.478 14.27 0.00 38.64 2.27
3112 11834 2.440627 AGAGACCACGGGTTTAACCTTT 59.559 45.455 14.27 0.00 38.64 3.11
3113 11835 2.052468 AGAGACCACGGGTTTAACCTT 58.948 47.619 14.27 0.00 38.64 3.50
3114 11836 1.725803 AGAGACCACGGGTTTAACCT 58.274 50.000 14.27 0.00 38.64 3.50
3115 11837 2.299867 TGTAGAGACCACGGGTTTAACC 59.700 50.000 5.40 5.40 35.25 2.85
3116 11838 3.665745 TGTAGAGACCACGGGTTTAAC 57.334 47.619 0.00 0.00 35.25 2.01
3117 11839 3.833650 TGATGTAGAGACCACGGGTTTAA 59.166 43.478 0.00 0.00 35.25 1.52
3118 11840 3.433343 TGATGTAGAGACCACGGGTTTA 58.567 45.455 0.00 0.00 35.25 2.01
3119 11841 2.253610 TGATGTAGAGACCACGGGTTT 58.746 47.619 0.00 0.00 35.25 3.27
3120 11842 1.933021 TGATGTAGAGACCACGGGTT 58.067 50.000 0.00 0.00 35.25 4.11
3121 11843 2.160721 ATGATGTAGAGACCACGGGT 57.839 50.000 0.00 0.00 39.44 5.28
3122 11844 2.168521 ACAATGATGTAGAGACCACGGG 59.831 50.000 0.00 0.00 38.24 5.28
3123 11845 3.119137 TCACAATGATGTAGAGACCACGG 60.119 47.826 0.00 0.00 37.82 4.94
3124 11846 4.110036 TCACAATGATGTAGAGACCACG 57.890 45.455 0.00 0.00 37.82 4.94
3125 11847 5.980698 CATCACAATGATGTAGAGACCAC 57.019 43.478 10.11 0.00 46.80 4.16
3142 11864 1.811965 TGCTATGGTTGTGTGCATCAC 59.188 47.619 11.13 11.13 46.31 3.06
3143 11865 2.197283 TGCTATGGTTGTGTGCATCA 57.803 45.000 0.00 0.00 0.00 3.07
3144 11866 6.748333 ATATATGCTATGGTTGTGTGCATC 57.252 37.500 0.00 0.00 42.42 3.91
3189 11911 4.844349 TCCAACAAATCCCCAACAAAAA 57.156 36.364 0.00 0.00 0.00 1.94
3190 11912 6.694445 ATATCCAACAAATCCCCAACAAAA 57.306 33.333 0.00 0.00 0.00 2.44
3191 11913 6.694445 AATATCCAACAAATCCCCAACAAA 57.306 33.333 0.00 0.00 0.00 2.83
3192 11914 6.694445 AAATATCCAACAAATCCCCAACAA 57.306 33.333 0.00 0.00 0.00 2.83
3193 11915 6.694445 AAAATATCCAACAAATCCCCAACA 57.306 33.333 0.00 0.00 0.00 3.33
3194 11916 9.508642 TTTTAAAATATCCAACAAATCCCCAAC 57.491 29.630 0.00 0.00 0.00 3.77
3219 11941 9.807649 GTGCTCATTTGGATATTTGAGTAATTT 57.192 29.630 0.00 0.00 38.26 1.82
3222 11944 7.936496 TGTGCTCATTTGGATATTTGAGTAA 57.064 32.000 0.00 0.00 38.26 2.24
3224 11946 7.123098 TCAATGTGCTCATTTGGATATTTGAGT 59.877 33.333 11.19 0.00 41.66 3.41
3230 11952 6.124340 TCACTCAATGTGCTCATTTGGATAT 58.876 36.000 11.19 0.00 45.81 1.63
3246 11968 5.132502 TCACCAACAAATCACTCACTCAAT 58.867 37.500 0.00 0.00 0.00 2.57
3267 11989 2.577563 TCCCTGGAAGATGCAAAGATCA 59.422 45.455 0.00 0.00 34.07 2.92
3271 11993 2.089980 CTGTCCCTGGAAGATGCAAAG 58.910 52.381 0.00 0.00 34.07 2.77
3296 12018 1.878522 CGCCGAGATCCTCCAAACG 60.879 63.158 0.00 0.00 0.00 3.60
3392 12114 3.737047 CGCCTACATACACGAACTTCCAT 60.737 47.826 0.00 0.00 0.00 3.41
3463 12193 8.772250 TCTCTATGGGTTTGATTATTTCTGACT 58.228 33.333 0.00 0.00 0.00 3.41
3518 12266 2.248248 CTCACTCCTGACCTAACCACA 58.752 52.381 0.00 0.00 0.00 4.17
3660 12410 2.236146 GTGTGTGGTGATGTATCCTCCA 59.764 50.000 3.05 3.05 0.00 3.86
3668 12420 1.421268 AGATGGTGTGTGTGGTGATGT 59.579 47.619 0.00 0.00 0.00 3.06
3790 12556 7.475015 GCAAAGCAATAGTAGATGAATGTCAA 58.525 34.615 0.00 0.00 0.00 3.18
3948 14108 9.709495 TGTTAACTGAATGTAATAAACGGTACT 57.291 29.630 7.22 0.00 0.00 2.73
4340 14510 6.712179 TGCACATATCAGCCATTATTTGAA 57.288 33.333 0.00 0.00 0.00 2.69
4363 14533 7.665559 TGAGCAGTTGTACCTGATAAAAAGAAT 59.334 33.333 3.57 0.00 34.23 2.40
4396 14566 7.231317 ACATATAATTATGCAGGTTCCAACAGG 59.769 37.037 8.28 0.00 39.09 4.00
4397 14567 8.077991 CACATATAATTATGCAGGTTCCAACAG 58.922 37.037 8.28 0.00 39.09 3.16
4494 14664 2.983907 TGTACTCAAACCCGACAACA 57.016 45.000 0.00 0.00 0.00 3.33
4503 14673 1.126113 CGTGTGCCGATGTACTCAAAC 59.874 52.381 0.00 0.00 39.56 2.93
4561 14742 2.159156 TCGTAACCATGCGTATCAGCTT 60.159 45.455 0.00 0.00 38.13 3.74
4666 14859 8.655935 AATTAAAGGTTGGATCAAATCTGACT 57.344 30.769 0.00 0.00 33.30 3.41
4755 14965 5.311265 TCTTTCTGTCATGATGCTTCAGTT 58.689 37.500 8.40 0.00 34.73 3.16
4862 15108 7.338710 ACATCAGTAAGTACAGTGGCATAATT 58.661 34.615 0.00 0.00 0.00 1.40
4863 15109 6.889198 ACATCAGTAAGTACAGTGGCATAAT 58.111 36.000 0.00 0.00 0.00 1.28
4864 15110 6.294361 ACATCAGTAAGTACAGTGGCATAA 57.706 37.500 0.00 0.00 0.00 1.90
4872 15118 7.591795 CCGAATAAGCTACATCAGTAAGTACAG 59.408 40.741 0.00 0.00 0.00 2.74
4897 15143 4.888326 AGTGCTGATCATCCTCTATTCC 57.112 45.455 0.00 0.00 0.00 3.01
4941 15190 5.421212 TGTACGTTTACATGTTTTGTCCC 57.579 39.130 2.30 0.00 39.87 4.46
4958 15207 3.829886 ATGGTGTTGAGCAAATGTACG 57.170 42.857 0.00 0.00 32.09 3.67
5040 15315 4.735985 TGTCTGAATTTGAATGCATTCCG 58.264 39.130 31.35 14.41 35.97 4.30
5102 15381 0.179089 CTCTGCCTCACATCGAAGGG 60.179 60.000 3.14 0.00 0.00 3.95
5103 15382 0.179089 CCTCTGCCTCACATCGAAGG 60.179 60.000 0.00 0.00 0.00 3.46
5104 15383 0.820226 TCCTCTGCCTCACATCGAAG 59.180 55.000 0.00 0.00 0.00 3.79
5105 15384 0.820226 CTCCTCTGCCTCACATCGAA 59.180 55.000 0.00 0.00 0.00 3.71
5110 15393 1.305633 CTCCCTCCTCTGCCTCACA 60.306 63.158 0.00 0.00 0.00 3.58
5137 15420 3.845625 GCATATAAAGCGTGGGCAC 57.154 52.632 0.00 0.00 43.41 5.01
5145 15428 1.076332 CTACCCCGCGCATATAAAGC 58.924 55.000 8.75 0.00 0.00 3.51
5146 15429 2.288579 TGTCTACCCCGCGCATATAAAG 60.289 50.000 8.75 0.00 0.00 1.85
5167 16398 1.455383 CGGCAAAGCACTGACCCTTT 61.455 55.000 0.00 0.00 0.00 3.11
5191 16422 2.758979 GGACTTCCTATGTCGAGTTCCA 59.241 50.000 0.00 0.00 35.45 3.53
5200 16431 1.192428 GACGGGTGGACTTCCTATGT 58.808 55.000 0.00 0.00 36.82 2.29
5210 16441 2.727392 CGGCTATTGGACGGGTGGA 61.727 63.158 0.00 0.00 43.88 4.02
5257 16488 5.422145 GTGGAAAAACTCGGCTAATACCTA 58.578 41.667 0.00 0.00 0.00 3.08
5262 16493 3.000727 CTCGTGGAAAAACTCGGCTAAT 58.999 45.455 0.00 0.00 0.00 1.73
5265 16496 0.391597 TCTCGTGGAAAAACTCGGCT 59.608 50.000 0.00 0.00 0.00 5.52
5290 16523 3.850122 TTTCAGAGATCACGTCGATGT 57.150 42.857 3.92 3.92 33.17 3.06
5355 16590 3.312973 TGTTTACTGGGTTTGCACTAACG 59.687 43.478 0.00 0.00 0.00 3.18
5399 16634 0.320374 TCCCAACAACGACTAGGCAG 59.680 55.000 0.00 0.00 0.00 4.85
5413 16648 2.153401 CCTGACAGGTGGGTCCCAA 61.153 63.158 13.78 0.00 36.97 4.12
5418 16653 3.570212 GTGCCCTGACAGGTGGGT 61.570 66.667 20.24 0.00 45.06 4.51
5442 16677 0.790814 GGGTTTCGCTCGTCAGAAAG 59.209 55.000 3.14 0.00 37.08 2.62
5452 16687 3.124921 CATTCGCCGGGTTTCGCT 61.125 61.111 2.18 0.00 37.59 4.93
5465 16700 2.798680 ACTAGACGATGTCGCACATTC 58.201 47.619 0.00 0.00 39.27 2.67
5482 16717 3.228453 ACTCGGTGACAAGGAGAAACTA 58.772 45.455 10.17 0.00 0.00 2.24
5506 16741 1.554617 GTGCCCAGTGCCCATAAAAAT 59.445 47.619 0.00 0.00 40.16 1.82
5539 16774 0.872388 GTAGTGCCACAAAACTCGGG 59.128 55.000 0.00 0.00 0.00 5.14
5575 16810 0.673644 AGGTGTCTGCCGATTTTCCG 60.674 55.000 0.00 0.00 0.00 4.30
5581 16816 1.672356 GTGCAAGGTGTCTGCCGAT 60.672 57.895 0.00 0.00 0.00 4.18
5596 16831 2.021068 TATCGGGAGCTCTGCAGTGC 62.021 60.000 28.82 28.82 35.00 4.40
5634 16869 1.134098 CCACCTATGCCGAGTTTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
5645 16880 0.179045 ACTGGAATCGCCACCTATGC 60.179 55.000 0.00 0.00 43.33 3.14
5649 16884 1.134098 CCATTACTGGAATCGCCACCT 60.134 52.381 0.00 0.00 46.37 4.00
5650 16885 1.308998 CCATTACTGGAATCGCCACC 58.691 55.000 0.00 0.00 46.37 4.61
5652 16887 2.752354 CAAACCATTACTGGAATCGCCA 59.248 45.455 6.05 0.00 46.37 5.69
5653 16888 3.013921 TCAAACCATTACTGGAATCGCC 58.986 45.455 6.05 0.00 46.37 5.54
5656 16891 9.657419 AAATGAAATCAAACCATTACTGGAATC 57.343 29.630 6.05 0.00 46.37 2.52
5666 16901 7.989416 ATCTTTGCAAATGAAATCAAACCAT 57.011 28.000 13.23 0.00 33.45 3.55
5683 16918 9.908152 ACCTATGTAAGTTTTACAAATCTTTGC 57.092 29.630 5.83 0.00 41.79 3.68
5734 16970 5.025826 CACAAAAGTTCCGTCTACAAACAC 58.974 41.667 0.00 0.00 0.00 3.32
5736 16972 5.473796 TCACAAAAGTTCCGTCTACAAAC 57.526 39.130 0.00 0.00 0.00 2.93
5737 16973 5.644636 ACTTCACAAAAGTTCCGTCTACAAA 59.355 36.000 0.00 0.00 0.00 2.83
5739 16975 4.761975 ACTTCACAAAAGTTCCGTCTACA 58.238 39.130 0.00 0.00 0.00 2.74
5740 16976 5.048507 AGACTTCACAAAAGTTCCGTCTAC 58.951 41.667 0.00 0.00 0.00 2.59
5741 16977 5.047847 CAGACTTCACAAAAGTTCCGTCTA 58.952 41.667 0.00 0.00 0.00 2.59
5742 16978 3.871594 CAGACTTCACAAAAGTTCCGTCT 59.128 43.478 0.00 0.00 0.00 4.18
5743 16979 3.002348 CCAGACTTCACAAAAGTTCCGTC 59.998 47.826 0.00 0.00 0.00 4.79
5744 16980 2.943033 CCAGACTTCACAAAAGTTCCGT 59.057 45.455 0.00 0.00 0.00 4.69
5745 16981 2.290641 CCCAGACTTCACAAAAGTTCCG 59.709 50.000 0.00 0.00 0.00 4.30
5746 16982 2.034685 GCCCAGACTTCACAAAAGTTCC 59.965 50.000 0.00 0.00 0.00 3.62
5747 16983 2.687935 TGCCCAGACTTCACAAAAGTTC 59.312 45.455 0.00 0.00 0.00 3.01
5748 16984 2.733956 TGCCCAGACTTCACAAAAGTT 58.266 42.857 0.00 0.00 0.00 2.66
5749 16985 2.435372 TGCCCAGACTTCACAAAAGT 57.565 45.000 0.00 0.00 0.00 2.66
5750 16986 3.131046 AGTTTGCCCAGACTTCACAAAAG 59.869 43.478 0.00 0.00 32.51 2.27
5751 16987 3.096092 AGTTTGCCCAGACTTCACAAAA 58.904 40.909 0.00 0.00 32.51 2.44
5752 16988 2.733956 AGTTTGCCCAGACTTCACAAA 58.266 42.857 0.00 0.00 0.00 2.83
5753 16989 2.426738 CAAGTTTGCCCAGACTTCACAA 59.573 45.455 1.65 0.00 34.05 3.33
5754 16990 2.023673 CAAGTTTGCCCAGACTTCACA 58.976 47.619 1.65 0.00 34.05 3.58
5755 16991 2.291741 CTCAAGTTTGCCCAGACTTCAC 59.708 50.000 1.65 0.00 34.05 3.18
5756 16992 2.575532 CTCAAGTTTGCCCAGACTTCA 58.424 47.619 1.65 0.00 34.05 3.02
5757 16993 1.882623 CCTCAAGTTTGCCCAGACTTC 59.117 52.381 1.65 0.00 34.05 3.01
5758 16994 1.986882 CCTCAAGTTTGCCCAGACTT 58.013 50.000 0.00 0.00 36.35 3.01
5759 16995 0.538287 GCCTCAAGTTTGCCCAGACT 60.538 55.000 0.00 0.00 0.00 3.24
5760 16996 1.527433 GGCCTCAAGTTTGCCCAGAC 61.527 60.000 0.00 0.00 39.30 3.51
5761 16997 1.228552 GGCCTCAAGTTTGCCCAGA 60.229 57.895 0.00 0.00 39.30 3.86
5762 16998 2.629656 CGGCCTCAAGTTTGCCCAG 61.630 63.158 0.00 0.00 42.29 4.45
5763 16999 2.597217 CGGCCTCAAGTTTGCCCA 60.597 61.111 0.00 0.00 42.29 5.36
5764 17000 2.282180 TCGGCCTCAAGTTTGCCC 60.282 61.111 0.00 0.00 42.29 5.36
5765 17001 1.600916 ACTCGGCCTCAAGTTTGCC 60.601 57.895 0.00 0.00 41.85 4.52
5766 17002 1.576421 CACTCGGCCTCAAGTTTGC 59.424 57.895 0.00 0.00 0.00 3.68
5767 17003 1.576421 GCACTCGGCCTCAAGTTTG 59.424 57.895 0.00 0.00 36.11 2.93
5768 17004 4.065110 GCACTCGGCCTCAAGTTT 57.935 55.556 0.00 0.00 36.11 2.66
5777 17013 0.673644 TTCAAGCTTAGGCACTCGGC 60.674 55.000 0.00 0.00 41.75 5.54
5778 17014 1.808411 TTTCAAGCTTAGGCACTCGG 58.192 50.000 0.00 0.00 41.75 4.63
5779 17015 2.029728 CGATTTCAAGCTTAGGCACTCG 59.970 50.000 0.00 0.00 41.75 4.18
5780 17016 2.352960 CCGATTTCAAGCTTAGGCACTC 59.647 50.000 0.00 0.00 41.75 3.51
5781 17017 2.027192 TCCGATTTCAAGCTTAGGCACT 60.027 45.455 0.00 0.00 46.37 4.40
5782 17018 2.356135 TCCGATTTCAAGCTTAGGCAC 58.644 47.619 0.00 0.00 41.70 5.01
5783 17019 2.779755 TCCGATTTCAAGCTTAGGCA 57.220 45.000 0.00 0.00 41.70 4.75
5784 17020 3.627577 TGATTCCGATTTCAAGCTTAGGC 59.372 43.478 0.00 0.00 39.06 3.93
5785 17021 4.274459 CCTGATTCCGATTTCAAGCTTAGG 59.726 45.833 0.00 0.00 0.00 2.69
5786 17022 4.878397 ACCTGATTCCGATTTCAAGCTTAG 59.122 41.667 0.00 0.00 0.00 2.18
5787 17023 4.635765 CACCTGATTCCGATTTCAAGCTTA 59.364 41.667 0.00 0.00 0.00 3.09
5788 17024 3.441572 CACCTGATTCCGATTTCAAGCTT 59.558 43.478 0.00 0.00 0.00 3.74
5789 17025 3.012518 CACCTGATTCCGATTTCAAGCT 58.987 45.455 0.00 0.00 0.00 3.74
5790 17026 2.749621 ACACCTGATTCCGATTTCAAGC 59.250 45.455 0.00 0.00 0.00 4.01
5791 17027 4.436050 CGAACACCTGATTCCGATTTCAAG 60.436 45.833 0.00 0.00 0.00 3.02
5792 17028 3.435327 CGAACACCTGATTCCGATTTCAA 59.565 43.478 0.00 0.00 0.00 2.69
5793 17029 3.000041 CGAACACCTGATTCCGATTTCA 59.000 45.455 0.00 0.00 0.00 2.69
5794 17030 3.259064 TCGAACACCTGATTCCGATTTC 58.741 45.455 0.00 0.00 0.00 2.17
5795 17031 3.328382 TCGAACACCTGATTCCGATTT 57.672 42.857 0.00 0.00 0.00 2.17
5796 17032 3.328382 TTCGAACACCTGATTCCGATT 57.672 42.857 0.00 0.00 0.00 3.34
5797 17033 3.543680 ATTCGAACACCTGATTCCGAT 57.456 42.857 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.