Multiple sequence alignment - TraesCS3D01G027400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G027400 chr3D 100.000 4277 0 0 1 4277 9311715 9315991 0.000000e+00 7899.0
1 TraesCS3D01G027400 chrUn 91.168 2174 134 24 560 2693 35130692 35128537 0.000000e+00 2900.0
2 TraesCS3D01G027400 chrUn 86.747 747 60 24 2572 3285 35128701 35127961 0.000000e+00 795.0
3 TraesCS3D01G027400 chrUn 93.233 133 7 1 3371 3501 35127931 35127799 1.210000e-45 195.0
4 TraesCS3D01G027400 chrUn 74.631 406 82 15 1011 1411 29874636 29875025 4.430000e-35 159.0
5 TraesCS3D01G027400 chrUn 78.346 254 38 10 3509 3747 35127848 35127597 9.580000e-32 148.0
6 TraesCS3D01G027400 chr5B 92.183 1484 102 9 1204 2686 670520462 670521932 0.000000e+00 2085.0
7 TraesCS3D01G027400 chr5B 86.747 747 60 24 2572 3285 670521773 670522513 0.000000e+00 795.0
8 TraesCS3D01G027400 chr5B 93.233 133 7 1 3371 3501 670522543 670522675 1.210000e-45 195.0
9 TraesCS3D01G027400 chr5B 78.346 254 38 10 3509 3747 670522626 670522877 9.580000e-32 148.0
10 TraesCS3D01G027400 chr3A 90.850 1388 61 19 156 1514 11813965 11812615 0.000000e+00 1799.0
11 TraesCS3D01G027400 chr3A 93.548 1085 66 3 1554 2634 11812620 11811536 0.000000e+00 1613.0
12 TraesCS3D01G027400 chr3A 89.490 961 69 18 2565 3507 11811663 11810717 0.000000e+00 1186.0
13 TraesCS3D01G027400 chr3A 94.877 527 21 4 3756 4277 7288454 7288979 0.000000e+00 819.0
14 TraesCS3D01G027400 chr3A 94.329 529 25 3 3749 4277 468425948 468426471 0.000000e+00 806.0
15 TraesCS3D01G027400 chr3A 93.951 529 27 4 3750 4276 51541968 51542493 0.000000e+00 795.0
16 TraesCS3D01G027400 chr3A 93.421 532 29 3 3750 4277 476600655 476601184 0.000000e+00 784.0
17 TraesCS3D01G027400 chr3A 93.271 535 30 3 3749 4277 663479608 663480142 0.000000e+00 784.0
18 TraesCS3D01G027400 chr3A 93.233 532 30 4 3750 4277 56961853 56961324 0.000000e+00 778.0
19 TraesCS3D01G027400 chr3A 92.924 537 34 4 3744 4277 242876138 242876673 0.000000e+00 778.0
20 TraesCS3D01G027400 chr3A 93.333 240 16 0 3509 3748 11810772 11810533 5.260000e-94 355.0
21 TraesCS3D01G027400 chr3A 88.660 97 7 3 1 95 11814361 11814267 9.720000e-22 115.0
22 TraesCS3D01G027400 chr3A 79.339 121 18 5 3630 3744 598982233 598982114 1.280000e-10 78.7
23 TraesCS3D01G027400 chr3A 94.000 50 3 0 109 158 11814047 11813998 4.590000e-10 76.8
24 TraesCS3D01G027400 chr3B 94.528 530 24 3 3750 4277 821829579 821829053 0.000000e+00 813.0
25 TraesCS3D01G027400 chr3B 93.621 533 29 4 3749 4277 196184071 196184602 0.000000e+00 791.0
26 TraesCS3D01G027400 chr3B 83.093 485 63 14 2752 3231 759794321 759794791 1.420000e-114 424.0
27 TraesCS3D01G027400 chr2B 93.727 542 27 5 3742 4277 754934595 754934055 0.000000e+00 806.0
28 TraesCS3D01G027400 chr2B 94.162 531 26 4 3749 4277 667269568 667269041 0.000000e+00 804.0
29 TraesCS3D01G027400 chr2A 93.609 532 28 5 3746 4277 158605510 158606035 0.000000e+00 789.0
30 TraesCS3D01G027400 chr2A 93.458 535 29 6 3745 4277 261151284 261150754 0.000000e+00 789.0
31 TraesCS3D01G027400 chr2A 93.458 535 30 4 3746 4277 505342318 505341786 0.000000e+00 789.0
32 TraesCS3D01G027400 chr2A 93.609 532 29 4 3746 4277 757293032 757293558 0.000000e+00 789.0
33 TraesCS3D01G027400 chr5A 92.871 533 35 3 3745 4276 440590079 440589549 0.000000e+00 771.0
34 TraesCS3D01G027400 chr5A 91.791 536 40 4 3742 4277 399343637 399344168 0.000000e+00 743.0
35 TraesCS3D01G027400 chr5A 87.500 64 6 2 3685 3747 44363875 44363937 5.930000e-09 73.1
36 TraesCS3D01G027400 chr7A 92.168 549 36 6 3731 4277 522586138 522585595 0.000000e+00 769.0
37 TraesCS3D01G027400 chr7A 92.350 549 26 13 3743 4277 142198240 142198786 0.000000e+00 767.0
38 TraesCS3D01G027400 chr7A 92.393 539 29 7 3742 4277 471005879 471006408 0.000000e+00 758.0
39 TraesCS3D01G027400 chr7A 92.322 534 36 4 3745 4277 530830882 530830353 0.000000e+00 754.0
40 TraesCS3D01G027400 chr7A 84.810 237 32 4 2993 3227 102096620 102096854 7.150000e-58 235.0
41 TraesCS3D01G027400 chr6B 88.727 550 54 6 3731 4277 45790174 45790718 0.000000e+00 665.0
42 TraesCS3D01G027400 chr6B 89.219 538 42 12 3742 4277 91170564 91171087 0.000000e+00 658.0
43 TraesCS3D01G027400 chr1D 81.600 500 68 17 2754 3235 478357148 478357641 4.010000e-105 392.0
44 TraesCS3D01G027400 chr1D 84.810 79 9 3 3669 3745 488548071 488547994 4.590000e-10 76.8
45 TraesCS3D01G027400 chr1B 81.304 460 65 13 2794 3235 666256218 666256674 1.890000e-93 353.0
46 TraesCS3D01G027400 chr1A 76.184 697 125 21 1699 2375 574639191 574639866 3.190000e-86 329.0
47 TraesCS3D01G027400 chr7D 84.874 238 30 6 2993 3227 99792725 99792491 7.150000e-58 235.0
48 TraesCS3D01G027400 chr7B 83.607 244 34 6 2993 3233 54904620 54904380 1.550000e-54 224.0
49 TraesCS3D01G027400 chr4B 78.439 269 47 9 1144 1411 667845333 667845075 9.510000e-37 165.0
50 TraesCS3D01G027400 chr4B 75.806 248 46 10 1165 1411 3636248 3636482 3.500000e-21 113.0
51 TraesCS3D01G027400 chr4D 76.210 248 45 9 1165 1411 2110312 2110546 7.510000e-23 119.0
52 TraesCS3D01G027400 chr4D 87.879 66 5 3 3673 3736 399220162 399220098 1.650000e-09 75.0
53 TraesCS3D01G027400 chr5D 89.394 66 4 3 3669 3732 350411669 350411733 3.550000e-11 80.5
54 TraesCS3D01G027400 chr5D 78.992 119 15 9 3637 3747 522113277 522113393 5.930000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G027400 chr3D 9311715 9315991 4276 False 7899.000000 7899 100.000000 1 4277 1 chr3D.!!$F1 4276
1 TraesCS3D01G027400 chrUn 35127597 35130692 3095 True 1009.500000 2900 87.373500 560 3747 4 chrUn.!!$R1 3187
2 TraesCS3D01G027400 chr5B 670520462 670522877 2415 False 805.750000 2085 87.627250 1204 3747 4 chr5B.!!$F1 2543
3 TraesCS3D01G027400 chr3A 11810533 11814361 3828 True 857.466667 1799 91.646833 1 3748 6 chr3A.!!$R3 3747
4 TraesCS3D01G027400 chr3A 7288454 7288979 525 False 819.000000 819 94.877000 3756 4277 1 chr3A.!!$F1 521
5 TraesCS3D01G027400 chr3A 468425948 468426471 523 False 806.000000 806 94.329000 3749 4277 1 chr3A.!!$F4 528
6 TraesCS3D01G027400 chr3A 51541968 51542493 525 False 795.000000 795 93.951000 3750 4276 1 chr3A.!!$F2 526
7 TraesCS3D01G027400 chr3A 476600655 476601184 529 False 784.000000 784 93.421000 3750 4277 1 chr3A.!!$F5 527
8 TraesCS3D01G027400 chr3A 663479608 663480142 534 False 784.000000 784 93.271000 3749 4277 1 chr3A.!!$F6 528
9 TraesCS3D01G027400 chr3A 56961324 56961853 529 True 778.000000 778 93.233000 3750 4277 1 chr3A.!!$R1 527
10 TraesCS3D01G027400 chr3A 242876138 242876673 535 False 778.000000 778 92.924000 3744 4277 1 chr3A.!!$F3 533
11 TraesCS3D01G027400 chr3B 821829053 821829579 526 True 813.000000 813 94.528000 3750 4277 1 chr3B.!!$R1 527
12 TraesCS3D01G027400 chr3B 196184071 196184602 531 False 791.000000 791 93.621000 3749 4277 1 chr3B.!!$F1 528
13 TraesCS3D01G027400 chr2B 754934055 754934595 540 True 806.000000 806 93.727000 3742 4277 1 chr2B.!!$R2 535
14 TraesCS3D01G027400 chr2B 667269041 667269568 527 True 804.000000 804 94.162000 3749 4277 1 chr2B.!!$R1 528
15 TraesCS3D01G027400 chr2A 158605510 158606035 525 False 789.000000 789 93.609000 3746 4277 1 chr2A.!!$F1 531
16 TraesCS3D01G027400 chr2A 261150754 261151284 530 True 789.000000 789 93.458000 3745 4277 1 chr2A.!!$R1 532
17 TraesCS3D01G027400 chr2A 505341786 505342318 532 True 789.000000 789 93.458000 3746 4277 1 chr2A.!!$R2 531
18 TraesCS3D01G027400 chr2A 757293032 757293558 526 False 789.000000 789 93.609000 3746 4277 1 chr2A.!!$F2 531
19 TraesCS3D01G027400 chr5A 440589549 440590079 530 True 771.000000 771 92.871000 3745 4276 1 chr5A.!!$R1 531
20 TraesCS3D01G027400 chr5A 399343637 399344168 531 False 743.000000 743 91.791000 3742 4277 1 chr5A.!!$F2 535
21 TraesCS3D01G027400 chr7A 522585595 522586138 543 True 769.000000 769 92.168000 3731 4277 1 chr7A.!!$R1 546
22 TraesCS3D01G027400 chr7A 142198240 142198786 546 False 767.000000 767 92.350000 3743 4277 1 chr7A.!!$F2 534
23 TraesCS3D01G027400 chr7A 471005879 471006408 529 False 758.000000 758 92.393000 3742 4277 1 chr7A.!!$F3 535
24 TraesCS3D01G027400 chr7A 530830353 530830882 529 True 754.000000 754 92.322000 3745 4277 1 chr7A.!!$R2 532
25 TraesCS3D01G027400 chr6B 45790174 45790718 544 False 665.000000 665 88.727000 3731 4277 1 chr6B.!!$F1 546
26 TraesCS3D01G027400 chr6B 91170564 91171087 523 False 658.000000 658 89.219000 3742 4277 1 chr6B.!!$F2 535
27 TraesCS3D01G027400 chr1A 574639191 574639866 675 False 329.000000 329 76.184000 1699 2375 1 chr1A.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 967 0.106708 ATGCATCGTGGCCGTAGAAT 59.893 50.0 0.0 0.0 35.01 2.4 F
1514 1823 0.034670 GCCCTCAACAGAGCCAAGAT 60.035 55.0 0.0 0.0 0.00 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1858 0.112412 TTGGAGGGCTTCTTGGTTCC 59.888 55.0 0.0 0.0 0.00 3.62 R
3456 3933 0.032515 TATCCACTGAGGCGGGAGAA 60.033 55.0 0.0 0.0 37.29 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.734463 TGTAGTTCGTGCAAAGGAATGA 58.266 40.909 0.00 0.00 0.00 2.57
32 33 5.874810 GTGCAAAGGAATGACATGTCTACTA 59.125 40.000 25.55 6.73 0.00 1.82
35 36 6.540189 GCAAAGGAATGACATGTCTACTATGT 59.460 38.462 25.55 5.01 41.21 2.29
36 37 7.466455 GCAAAGGAATGACATGTCTACTATGTG 60.466 40.741 25.55 16.37 38.78 3.21
37 38 5.605534 AGGAATGACATGTCTACTATGTGC 58.394 41.667 25.55 8.82 38.78 4.57
69 70 4.632153 AGTTAGCAAGGTTCTGTAGTGTG 58.368 43.478 0.00 0.00 0.00 3.82
91 92 2.692557 TGTGGTTTGGTTGGTCATGAAG 59.307 45.455 0.00 0.00 0.00 3.02
95 96 4.582656 TGGTTTGGTTGGTCATGAAGTTAG 59.417 41.667 0.00 0.00 0.00 2.34
96 97 4.546570 GTTTGGTTGGTCATGAAGTTAGC 58.453 43.478 0.00 0.00 0.00 3.09
97 98 3.500448 TGGTTGGTCATGAAGTTAGCA 57.500 42.857 0.00 0.00 0.00 3.49
100 101 3.191371 GGTTGGTCATGAAGTTAGCAAGG 59.809 47.826 0.00 0.00 31.85 3.61
101 102 3.788227 TGGTCATGAAGTTAGCAAGGT 57.212 42.857 0.00 0.00 0.00 3.50
103 104 4.469657 TGGTCATGAAGTTAGCAAGGTTT 58.530 39.130 0.00 0.00 0.00 3.27
104 105 5.626142 TGGTCATGAAGTTAGCAAGGTTTA 58.374 37.500 0.00 0.00 0.00 2.01
107 314 4.391830 TCATGAAGTTAGCAAGGTTTAGCG 59.608 41.667 0.00 0.00 35.48 4.26
116 323 2.009774 CAAGGTTTAGCGGGACTCATG 58.990 52.381 0.00 0.00 0.00 3.07
119 326 2.505819 AGGTTTAGCGGGACTCATGAAT 59.494 45.455 0.00 0.00 0.00 2.57
124 331 1.278985 AGCGGGACTCATGAATGTTGA 59.721 47.619 0.00 0.00 0.00 3.18
162 404 1.859427 GCTGCATATGGATGGCACCG 61.859 60.000 4.56 0.00 33.26 4.94
167 409 2.067932 ATATGGATGGCACCGGGTGG 62.068 60.000 27.41 10.40 42.84 4.61
180 422 2.409870 GGGTGGAATTCTGGCGCTG 61.410 63.158 7.64 0.11 0.00 5.18
188 430 1.386533 ATTCTGGCGCTGATTGAAGG 58.613 50.000 7.64 0.00 0.00 3.46
200 442 0.553612 ATTGAAGGGAAGGGGGAGCT 60.554 55.000 0.00 0.00 0.00 4.09
205 447 1.074296 AGGGAAGGGGGAGCTGTTTT 61.074 55.000 0.00 0.00 0.00 2.43
222 464 5.794945 GCTGTTTTTCTTTGGTTTTTCTTGC 59.205 36.000 0.00 0.00 0.00 4.01
223 465 6.567511 GCTGTTTTTCTTTGGTTTTTCTTGCA 60.568 34.615 0.00 0.00 0.00 4.08
250 492 1.271379 GCAGGGCAGTAAAGTCAAGGA 60.271 52.381 0.00 0.00 0.00 3.36
336 580 6.775142 TGATCAGTTTTATGTGTCTTTTCCCA 59.225 34.615 0.00 0.00 0.00 4.37
345 589 9.974980 TTTATGTGTCTTTTCCCACTTATTTTC 57.025 29.630 0.00 0.00 32.76 2.29
346 590 7.595819 ATGTGTCTTTTCCCACTTATTTTCA 57.404 32.000 0.00 0.00 32.76 2.69
347 591 7.411486 TGTGTCTTTTCCCACTTATTTTCAA 57.589 32.000 0.00 0.00 32.76 2.69
348 592 8.017418 TGTGTCTTTTCCCACTTATTTTCAAT 57.983 30.769 0.00 0.00 32.76 2.57
349 593 8.482128 TGTGTCTTTTCCCACTTATTTTCAATT 58.518 29.630 0.00 0.00 32.76 2.32
350 594 8.764287 GTGTCTTTTCCCACTTATTTTCAATTG 58.236 33.333 0.00 0.00 0.00 2.32
351 595 8.482128 TGTCTTTTCCCACTTATTTTCAATTGT 58.518 29.630 5.13 0.00 0.00 2.71
352 596 9.325198 GTCTTTTCCCACTTATTTTCAATTGTT 57.675 29.630 5.13 0.00 0.00 2.83
353 597 9.898152 TCTTTTCCCACTTATTTTCAATTGTTT 57.102 25.926 5.13 0.00 0.00 2.83
355 599 8.669946 TTTCCCACTTATTTTCAATTGTTTCC 57.330 30.769 5.13 0.00 0.00 3.13
356 600 7.610580 TCCCACTTATTTTCAATTGTTTCCT 57.389 32.000 5.13 0.00 0.00 3.36
357 601 8.028652 TCCCACTTATTTTCAATTGTTTCCTT 57.971 30.769 5.13 0.00 0.00 3.36
358 602 8.147704 TCCCACTTATTTTCAATTGTTTCCTTC 58.852 33.333 5.13 0.00 0.00 3.46
367 611 9.952030 TTTTCAATTGTTTCCTTCTTTTTACCT 57.048 25.926 5.13 0.00 0.00 3.08
517 761 8.789825 AGTGATAGGTATAGTCGGTATAGTTG 57.210 38.462 0.00 0.00 0.00 3.16
520 764 7.826252 TGATAGGTATAGTCGGTATAGTTGTCC 59.174 40.741 0.00 0.00 0.00 4.02
530 774 4.748102 CGGTATAGTTGTCCGCACAATAAT 59.252 41.667 0.00 0.00 44.47 1.28
532 776 2.919666 AGTTGTCCGCACAATAATGC 57.080 45.000 0.00 0.00 44.47 3.56
564 808 3.955650 ACGTAGTACATGCAAAGTCCT 57.044 42.857 0.38 0.00 41.94 3.85
579 823 8.044060 TGCAAAGTCCTAATCAATAAAGTGAG 57.956 34.615 0.00 0.00 0.00 3.51
616 860 1.370657 ATCTCTAGCTAACGCGCGC 60.371 57.895 32.58 23.91 42.32 6.86
682 931 2.498167 CTGCAGCCTTGTTTCTACAGT 58.502 47.619 0.00 0.00 35.28 3.55
702 951 6.507900 ACAGTGTATCTACAGTATCACATGC 58.492 40.000 0.00 0.00 37.75 4.06
717 966 0.809636 CATGCATCGTGGCCGTAGAA 60.810 55.000 0.00 0.00 35.01 2.10
718 967 0.106708 ATGCATCGTGGCCGTAGAAT 59.893 50.000 0.00 0.00 35.01 2.40
752 1001 2.493030 GCAAAGCGCATGCATCCT 59.507 55.556 26.91 7.60 46.23 3.24
768 1030 2.808206 CCTGGGCCGGGAGTATCAC 61.808 68.421 28.43 0.00 36.25 3.06
899 1186 1.859998 GCGGCGCAAATAAGATGGAAC 60.860 52.381 29.21 0.00 0.00 3.62
970 1257 1.471684 ACGTACCTCGAGTGATTGGAC 59.528 52.381 12.31 1.10 42.86 4.02
992 1279 2.159824 TGGTAAAACACACACACACACG 59.840 45.455 0.00 0.00 0.00 4.49
1257 1566 4.500116 GAGCAGTCGGGCGTCCTC 62.500 72.222 3.66 0.00 39.27 3.71
1467 1776 1.136984 CCTTCTCTTCGTCGTCGGG 59.863 63.158 1.55 0.00 37.69 5.14
1509 1818 2.436109 TTGGCCCTCAACAGAGCC 59.564 61.111 0.00 0.00 45.96 4.70
1511 1820 2.436109 GGCCCTCAACAGAGCCAA 59.564 61.111 0.00 0.00 45.07 4.52
1512 1821 1.676967 GGCCCTCAACAGAGCCAAG 60.677 63.158 0.00 0.00 45.07 3.61
1513 1822 1.376466 GCCCTCAACAGAGCCAAGA 59.624 57.895 0.00 0.00 0.00 3.02
1514 1823 0.034670 GCCCTCAACAGAGCCAAGAT 60.035 55.000 0.00 0.00 0.00 2.40
1515 1824 2.016096 GCCCTCAACAGAGCCAAGATC 61.016 57.143 0.00 0.00 0.00 2.75
1516 1825 1.280133 CCCTCAACAGAGCCAAGATCA 59.720 52.381 0.00 0.00 0.00 2.92
1517 1826 2.290514 CCCTCAACAGAGCCAAGATCAA 60.291 50.000 0.00 0.00 0.00 2.57
1518 1827 3.008330 CCTCAACAGAGCCAAGATCAAG 58.992 50.000 0.00 0.00 0.00 3.02
1519 1828 2.419324 CTCAACAGAGCCAAGATCAAGC 59.581 50.000 0.00 0.00 0.00 4.01
1520 1829 1.129998 CAACAGAGCCAAGATCAAGCG 59.870 52.381 0.00 0.00 0.00 4.68
1521 1830 0.392193 ACAGAGCCAAGATCAAGCGG 60.392 55.000 0.00 0.00 0.00 5.52
1522 1831 1.451028 AGAGCCAAGATCAAGCGGC 60.451 57.895 6.60 6.60 45.23 6.53
1524 1833 2.796651 GCCAAGATCAAGCGGCTG 59.203 61.111 1.81 0.00 41.50 4.85
1525 1834 2.768492 GCCAAGATCAAGCGGCTGG 61.768 63.158 1.81 0.00 41.50 4.85
1526 1835 2.768492 CCAAGATCAAGCGGCTGGC 61.768 63.158 1.81 0.00 44.05 4.85
1548 1857 4.947147 GTGTCGGCCTGGGTGCAA 62.947 66.667 0.00 0.00 0.00 4.08
1549 1858 4.641645 TGTCGGCCTGGGTGCAAG 62.642 66.667 0.00 0.00 0.00 4.01
1552 1861 4.659172 CGGCCTGGGTGCAAGGAA 62.659 66.667 7.13 0.00 36.91 3.36
1563 1917 0.827507 TGCAAGGAACCAAGAAGCCC 60.828 55.000 0.00 0.00 0.00 5.19
1569 1923 1.480498 GGAACCAAGAAGCCCTCCAAA 60.480 52.381 0.00 0.00 0.00 3.28
1653 2007 1.076777 ACAAAGCAGTGGCAGTGGT 60.077 52.632 20.66 20.66 44.61 4.16
1761 2115 0.392193 ACATGTCACTGCTAGCTGCC 60.392 55.000 20.35 9.91 42.00 4.85
2176 2545 4.821589 GGGAGGGCGACAAGAGCG 62.822 72.222 0.00 0.00 35.00 5.03
2189 2558 0.389391 AAGAGCGTCGGGTGGATATG 59.611 55.000 0.00 0.00 0.00 1.78
2343 2712 2.027192 TGCCAGTTACAGGATCTTGGAC 60.027 50.000 9.90 7.53 0.00 4.02
2421 2790 1.772063 AAAGCTTGCGCGTCTCGTTT 61.772 50.000 8.43 0.00 42.32 3.60
2503 2872 1.138859 CTGCCTTGGTCGATGATGGTA 59.861 52.381 0.00 0.00 0.00 3.25
2512 2881 4.707934 TGGTCGATGATGGTAGTAAACAGA 59.292 41.667 0.00 0.00 0.00 3.41
2519 2888 6.049955 TGATGGTAGTAAACAGAAAGGAGG 57.950 41.667 0.00 0.00 0.00 4.30
2522 2891 5.399991 TGGTAGTAAACAGAAAGGAGGAGA 58.600 41.667 0.00 0.00 0.00 3.71
2534 2903 0.105709 GGAGGAGAAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
2546 2915 3.841255 GGAGGAGGAGGAGAAGAAAAAGA 59.159 47.826 0.00 0.00 0.00 2.52
2548 2917 5.427378 GAGGAGGAGGAGAAGAAAAAGATG 58.573 45.833 0.00 0.00 0.00 2.90
2555 2948 7.828717 AGGAGGAGAAGAAAAAGATGAAGAATC 59.171 37.037 0.00 0.00 35.29 2.52
2586 2979 0.325110 CAGCAGAAGGAGGAGGAGGA 60.325 60.000 0.00 0.00 0.00 3.71
2588 2981 1.685355 GCAGAAGGAGGAGGAGGAGC 61.685 65.000 0.00 0.00 0.00 4.70
2590 2983 0.415429 AGAAGGAGGAGGAGGAGCAA 59.585 55.000 0.00 0.00 0.00 3.91
2597 2996 3.308760 GGAGGAGGAGGAGCAAAAGAAAT 60.309 47.826 0.00 0.00 0.00 2.17
2600 2999 4.785376 AGGAGGAGGAGCAAAAGAAATAGA 59.215 41.667 0.00 0.00 0.00 1.98
2642 3041 0.803740 GCAGCAGCAGAAGAAGAAGG 59.196 55.000 0.00 0.00 41.58 3.46
2643 3042 1.881498 GCAGCAGCAGAAGAAGAAGGT 60.881 52.381 0.00 0.00 41.58 3.50
2644 3043 1.805345 CAGCAGCAGAAGAAGAAGGTG 59.195 52.381 0.00 0.00 0.00 4.00
2645 3044 0.520847 GCAGCAGAAGAAGAAGGTGC 59.479 55.000 0.00 0.00 46.21 5.01
2646 3045 1.888215 CAGCAGAAGAAGAAGGTGCA 58.112 50.000 0.00 0.00 36.57 4.57
2647 3046 1.805345 CAGCAGAAGAAGAAGGTGCAG 59.195 52.381 0.00 0.00 36.57 4.41
2649 3048 1.881498 GCAGAAGAAGAAGGTGCAGCT 60.881 52.381 13.85 13.85 34.18 4.24
2659 3058 2.758736 AGGTGCAGCTGTAGAAGAAG 57.241 50.000 19.45 0.00 0.00 2.85
2666 3065 3.370672 GCAGCTGTAGAAGAAGAAGAAGC 59.629 47.826 16.64 0.00 0.00 3.86
2668 3067 4.993584 CAGCTGTAGAAGAAGAAGAAGCAA 59.006 41.667 5.25 0.00 31.85 3.91
2669 3068 4.994217 AGCTGTAGAAGAAGAAGAAGCAAC 59.006 41.667 0.00 0.00 31.85 4.17
2672 3113 4.752101 TGTAGAAGAAGAAGAAGCAACAGC 59.248 41.667 0.00 0.00 0.00 4.40
2677 3118 3.563390 AGAAGAAGAAGCAACAGCAGAAC 59.437 43.478 0.00 0.00 0.00 3.01
2701 3142 2.599408 AGAACGGAAGAGTAGGGACA 57.401 50.000 0.00 0.00 0.00 4.02
2702 3143 2.448453 AGAACGGAAGAGTAGGGACAG 58.552 52.381 0.00 0.00 0.00 3.51
2703 3144 0.896226 AACGGAAGAGTAGGGACAGC 59.104 55.000 0.00 0.00 0.00 4.40
2704 3145 0.251653 ACGGAAGAGTAGGGACAGCA 60.252 55.000 0.00 0.00 0.00 4.41
2705 3146 0.457851 CGGAAGAGTAGGGACAGCAG 59.542 60.000 0.00 0.00 0.00 4.24
2706 3147 0.827368 GGAAGAGTAGGGACAGCAGG 59.173 60.000 0.00 0.00 0.00 4.85
2707 3148 0.827368 GAAGAGTAGGGACAGCAGGG 59.173 60.000 0.00 0.00 0.00 4.45
2708 3149 0.413832 AAGAGTAGGGACAGCAGGGA 59.586 55.000 0.00 0.00 0.00 4.20
2709 3150 0.413832 AGAGTAGGGACAGCAGGGAA 59.586 55.000 0.00 0.00 0.00 3.97
2710 3151 0.827368 GAGTAGGGACAGCAGGGAAG 59.173 60.000 0.00 0.00 0.00 3.46
2711 3152 1.222113 GTAGGGACAGCAGGGAAGC 59.778 63.158 0.00 0.00 0.00 3.86
2729 3170 2.376808 GCTGCAGCTGTAGAAGAAGA 57.623 50.000 32.74 0.00 38.21 2.87
2730 3171 2.693069 GCTGCAGCTGTAGAAGAAGAA 58.307 47.619 32.74 0.00 38.21 2.52
2731 3172 2.672381 GCTGCAGCTGTAGAAGAAGAAG 59.328 50.000 32.74 6.76 38.21 2.85
2732 3173 2.672381 CTGCAGCTGTAGAAGAAGAAGC 59.328 50.000 25.86 1.07 0.00 3.86
2733 3174 2.037641 TGCAGCTGTAGAAGAAGAAGCA 59.962 45.455 16.64 0.00 36.32 3.91
2734 3175 3.070018 GCAGCTGTAGAAGAAGAAGCAA 58.930 45.455 16.64 0.00 36.32 3.91
2735 3176 3.120373 GCAGCTGTAGAAGAAGAAGCAAC 60.120 47.826 16.64 0.00 36.32 4.17
2736 3177 4.060900 CAGCTGTAGAAGAAGAAGCAACA 58.939 43.478 5.25 0.00 36.32 3.33
2737 3178 4.152045 CAGCTGTAGAAGAAGAAGCAACAG 59.848 45.833 5.25 0.00 36.32 3.16
2738 3179 3.434984 GCTGTAGAAGAAGAAGCAACAGG 59.565 47.826 0.00 0.00 34.77 4.00
2739 3180 4.800914 GCTGTAGAAGAAGAAGCAACAGGA 60.801 45.833 0.00 0.00 34.77 3.86
2740 3181 4.887748 TGTAGAAGAAGAAGCAACAGGAG 58.112 43.478 0.00 0.00 0.00 3.69
2741 3182 4.588951 TGTAGAAGAAGAAGCAACAGGAGA 59.411 41.667 0.00 0.00 0.00 3.71
2742 3183 4.696479 AGAAGAAGAAGCAACAGGAGAA 57.304 40.909 0.00 0.00 0.00 2.87
2743 3184 4.640364 AGAAGAAGAAGCAACAGGAGAAG 58.360 43.478 0.00 0.00 0.00 2.85
2744 3185 3.415457 AGAAGAAGCAACAGGAGAAGG 57.585 47.619 0.00 0.00 0.00 3.46
2745 3186 2.975489 AGAAGAAGCAACAGGAGAAGGA 59.025 45.455 0.00 0.00 0.00 3.36
2746 3187 3.586618 AGAAGAAGCAACAGGAGAAGGAT 59.413 43.478 0.00 0.00 0.00 3.24
2747 3188 3.625649 AGAAGCAACAGGAGAAGGATC 57.374 47.619 0.00 0.00 0.00 3.36
2748 3189 2.909006 AGAAGCAACAGGAGAAGGATCA 59.091 45.455 0.00 0.00 0.00 2.92
2749 3190 3.055240 AGAAGCAACAGGAGAAGGATCAG 60.055 47.826 0.00 0.00 0.00 2.90
2750 3191 1.558756 AGCAACAGGAGAAGGATCAGG 59.441 52.381 0.00 0.00 0.00 3.86
2751 3192 1.556911 GCAACAGGAGAAGGATCAGGA 59.443 52.381 0.00 0.00 0.00 3.86
2781 3222 2.420022 GCTTCATATCAAGTGCACGGTT 59.580 45.455 12.01 5.83 0.00 4.44
2830 3271 1.697432 TCAACTTCAACCCGGAGATGT 59.303 47.619 0.73 3.58 0.00 3.06
2857 3298 3.200593 GCAGCAGGCACCATCTCG 61.201 66.667 0.00 0.00 43.97 4.04
2871 3312 1.994507 ATCTCGTCTCCGAAGCCGTG 61.995 60.000 0.00 0.00 43.69 4.94
2953 3394 0.109153 TGAGCTCATTGCCGGCATAT 59.891 50.000 33.25 22.68 44.23 1.78
3048 3507 1.457831 GCTGGAGATACGGGACCCT 60.458 63.158 9.41 0.00 0.00 4.34
3123 3582 0.464373 CGAGCATGTGCAGGGGTTAT 60.464 55.000 7.83 0.00 45.16 1.89
3287 3749 5.293569 CGCCGGTTACTTGATTCTATTTCTT 59.706 40.000 1.90 0.00 0.00 2.52
3292 3754 7.180748 GGTTACTTGATTCTATTTCTTCGTGC 58.819 38.462 0.00 0.00 0.00 5.34
3297 3759 2.363788 TCTATTTCTTCGTGCGCTGT 57.636 45.000 9.73 0.00 0.00 4.40
3397 3859 1.067000 TGTTTTGTGTGCTGCTTGCTT 60.067 42.857 0.00 0.00 43.37 3.91
3433 3908 4.737765 TCTTGCTGTTTAATTTGTTGTCGC 59.262 37.500 0.00 0.00 0.00 5.19
3456 3933 0.613260 TGTGCCGCCAAAGATAGACT 59.387 50.000 0.00 0.00 0.00 3.24
3457 3934 1.003118 TGTGCCGCCAAAGATAGACTT 59.997 47.619 0.00 0.00 40.98 3.01
3458 3935 1.666189 GTGCCGCCAAAGATAGACTTC 59.334 52.381 0.00 0.00 37.93 3.01
3459 3936 1.555075 TGCCGCCAAAGATAGACTTCT 59.445 47.619 0.00 0.00 37.93 2.85
3460 3937 2.205911 GCCGCCAAAGATAGACTTCTC 58.794 52.381 0.00 0.00 37.93 2.87
3461 3938 2.827652 CCGCCAAAGATAGACTTCTCC 58.172 52.381 0.00 0.00 37.93 3.71
3462 3939 2.483889 CCGCCAAAGATAGACTTCTCCC 60.484 54.545 0.00 0.00 37.93 4.30
3463 3940 2.799917 CGCCAAAGATAGACTTCTCCCG 60.800 54.545 0.00 0.00 37.93 5.14
3464 3941 2.827652 CCAAAGATAGACTTCTCCCGC 58.172 52.381 0.00 0.00 37.93 6.13
3465 3942 2.483889 CCAAAGATAGACTTCTCCCGCC 60.484 54.545 0.00 0.00 37.93 6.13
3466 3943 2.432510 CAAAGATAGACTTCTCCCGCCT 59.567 50.000 0.00 0.00 37.93 5.52
3467 3944 1.989706 AGATAGACTTCTCCCGCCTC 58.010 55.000 0.00 0.00 0.00 4.70
3468 3945 1.215673 AGATAGACTTCTCCCGCCTCA 59.784 52.381 0.00 0.00 0.00 3.86
3469 3946 1.611491 GATAGACTTCTCCCGCCTCAG 59.389 57.143 0.00 0.00 0.00 3.35
3470 3947 0.331954 TAGACTTCTCCCGCCTCAGT 59.668 55.000 0.00 0.00 0.00 3.41
3471 3948 1.216710 GACTTCTCCCGCCTCAGTG 59.783 63.158 0.00 0.00 0.00 3.66
3472 3949 2.232298 GACTTCTCCCGCCTCAGTGG 62.232 65.000 0.00 0.00 43.86 4.00
3479 3956 4.368391 CGCCTCAGTGGATATGCC 57.632 61.111 0.00 0.00 38.35 4.40
3480 3957 1.750930 CGCCTCAGTGGATATGCCT 59.249 57.895 0.00 0.00 38.35 4.75
3481 3958 0.107456 CGCCTCAGTGGATATGCCTT 59.893 55.000 0.00 0.00 38.35 4.35
3482 3959 1.344438 CGCCTCAGTGGATATGCCTTA 59.656 52.381 0.00 0.00 38.35 2.69
3483 3960 2.224281 CGCCTCAGTGGATATGCCTTAA 60.224 50.000 0.00 0.00 38.35 1.85
3484 3961 3.557898 CGCCTCAGTGGATATGCCTTAAT 60.558 47.826 0.00 0.00 38.35 1.40
3485 3962 4.322725 CGCCTCAGTGGATATGCCTTAATA 60.323 45.833 0.00 0.00 38.35 0.98
3486 3963 5.627735 CGCCTCAGTGGATATGCCTTAATAT 60.628 44.000 0.00 0.00 38.35 1.28
3487 3964 6.183347 GCCTCAGTGGATATGCCTTAATATT 58.817 40.000 0.00 0.00 38.35 1.28
3488 3965 6.660949 GCCTCAGTGGATATGCCTTAATATTT 59.339 38.462 0.00 0.00 38.35 1.40
3489 3966 7.177392 GCCTCAGTGGATATGCCTTAATATTTT 59.823 37.037 0.00 0.00 38.35 1.82
3490 3967 8.517878 CCTCAGTGGATATGCCTTAATATTTTG 58.482 37.037 0.00 0.00 38.35 2.44
3491 3968 7.885297 TCAGTGGATATGCCTTAATATTTTGC 58.115 34.615 0.00 0.00 37.63 3.68
3492 3969 7.725397 TCAGTGGATATGCCTTAATATTTTGCT 59.275 33.333 0.00 0.00 37.63 3.91
3493 3970 7.811236 CAGTGGATATGCCTTAATATTTTGCTG 59.189 37.037 0.00 0.00 37.63 4.41
3494 3971 7.506938 AGTGGATATGCCTTAATATTTTGCTGT 59.493 33.333 0.00 0.00 37.63 4.40
3495 3972 8.792633 GTGGATATGCCTTAATATTTTGCTGTA 58.207 33.333 0.00 0.00 37.63 2.74
3496 3973 9.360901 TGGATATGCCTTAATATTTTGCTGTAA 57.639 29.630 0.00 0.00 37.63 2.41
3508 3985 9.889128 AATATTTTGCTGTAATAATTGTGCCTT 57.111 25.926 0.00 0.00 0.00 4.35
3510 3987 8.931385 ATTTTGCTGTAATAATTGTGCCTTAG 57.069 30.769 0.00 0.00 0.00 2.18
3511 3988 7.695480 TTTGCTGTAATAATTGTGCCTTAGA 57.305 32.000 0.00 0.00 0.00 2.10
3512 3989 6.677781 TGCTGTAATAATTGTGCCTTAGAC 57.322 37.500 0.00 0.00 0.00 2.59
3524 4001 1.755380 GCCTTAGACTTCTCCGGCTAA 59.245 52.381 0.00 0.00 37.99 3.09
3526 4003 3.783191 CCTTAGACTTCTCCGGCTAAAC 58.217 50.000 0.00 0.00 0.00 2.01
3572 4049 6.923508 TCTGTAATAATTGTGCCGACTATCAG 59.076 38.462 0.00 0.00 0.00 2.90
3580 4057 2.047061 TGCCGACTATCAGCCCTTAAT 58.953 47.619 0.00 0.00 0.00 1.40
3627 4104 9.959749 TTGTTAAACCTTTATCATCACTTTCAC 57.040 29.630 0.00 0.00 0.00 3.18
3628 4105 9.126151 TGTTAAACCTTTATCATCACTTTCACA 57.874 29.630 0.00 0.00 0.00 3.58
3629 4106 9.959749 GTTAAACCTTTATCATCACTTTCACAA 57.040 29.630 0.00 0.00 0.00 3.33
3633 4110 9.696917 AACCTTTATCATCACTTTCACAAATTC 57.303 29.630 0.00 0.00 0.00 2.17
3634 4111 8.306761 ACCTTTATCATCACTTTCACAAATTCC 58.693 33.333 0.00 0.00 0.00 3.01
3635 4112 7.761249 CCTTTATCATCACTTTCACAAATTCCC 59.239 37.037 0.00 0.00 0.00 3.97
3636 4113 4.764679 TCATCACTTTCACAAATTCCCG 57.235 40.909 0.00 0.00 0.00 5.14
3637 4114 4.141287 TCATCACTTTCACAAATTCCCGT 58.859 39.130 0.00 0.00 0.00 5.28
3638 4115 3.980646 TCACTTTCACAAATTCCCGTG 57.019 42.857 0.00 0.00 34.34 4.94
3639 4116 2.034053 TCACTTTCACAAATTCCCGTGC 59.966 45.455 0.00 0.00 33.03 5.34
3640 4117 1.001815 ACTTTCACAAATTCCCGTGCG 60.002 47.619 0.00 0.00 33.03 5.34
3641 4118 1.001815 CTTTCACAAATTCCCGTGCGT 60.002 47.619 0.00 0.00 33.03 5.24
3642 4119 1.025812 TTCACAAATTCCCGTGCGTT 58.974 45.000 0.00 0.00 33.03 4.84
3643 4120 0.309302 TCACAAATTCCCGTGCGTTG 59.691 50.000 0.00 0.00 33.03 4.10
3644 4121 1.007849 ACAAATTCCCGTGCGTTGC 60.008 52.632 0.00 0.00 0.00 4.17
3645 4122 1.007964 CAAATTCCCGTGCGTTGCA 60.008 52.632 0.00 0.00 35.60 4.08
3646 4123 0.596083 CAAATTCCCGTGCGTTGCAA 60.596 50.000 0.00 0.00 41.47 4.08
3647 4124 0.103208 AAATTCCCGTGCGTTGCAAA 59.897 45.000 0.00 0.00 41.47 3.68
3648 4125 0.318614 AATTCCCGTGCGTTGCAAAG 60.319 50.000 8.11 8.11 41.47 2.77
3649 4126 2.141122 ATTCCCGTGCGTTGCAAAGG 62.141 55.000 14.31 4.49 41.47 3.11
3650 4127 3.283684 CCCGTGCGTTGCAAAGGA 61.284 61.111 14.31 8.61 41.47 3.36
3651 4128 2.252260 CCGTGCGTTGCAAAGGAG 59.748 61.111 14.31 5.61 41.47 3.69
3652 4129 2.542907 CCGTGCGTTGCAAAGGAGT 61.543 57.895 14.31 0.00 41.47 3.85
3653 4130 1.225376 CCGTGCGTTGCAAAGGAGTA 61.225 55.000 14.31 0.00 41.47 2.59
3654 4131 0.796312 CGTGCGTTGCAAAGGAGTAT 59.204 50.000 14.31 0.00 41.47 2.12
3655 4132 1.996898 CGTGCGTTGCAAAGGAGTATA 59.003 47.619 14.31 0.00 41.47 1.47
3656 4133 2.413796 CGTGCGTTGCAAAGGAGTATAA 59.586 45.455 14.31 0.00 41.47 0.98
3657 4134 3.120477 CGTGCGTTGCAAAGGAGTATAAA 60.120 43.478 14.31 0.00 41.47 1.40
3658 4135 4.436852 CGTGCGTTGCAAAGGAGTATAAAT 60.437 41.667 14.31 0.00 41.47 1.40
3659 4136 4.793216 GTGCGTTGCAAAGGAGTATAAATG 59.207 41.667 14.31 0.00 41.47 2.32
3660 4137 4.457603 TGCGTTGCAAAGGAGTATAAATGT 59.542 37.500 14.31 0.00 34.76 2.71
3661 4138 5.048364 TGCGTTGCAAAGGAGTATAAATGTT 60.048 36.000 14.31 0.00 34.76 2.71
3662 4139 5.511729 GCGTTGCAAAGGAGTATAAATGTTC 59.488 40.000 14.31 0.00 32.44 3.18
3663 4140 6.027749 CGTTGCAAAGGAGTATAAATGTTCC 58.972 40.000 0.00 0.00 32.44 3.62
3664 4141 6.348950 CGTTGCAAAGGAGTATAAATGTTCCA 60.349 38.462 0.00 0.00 32.44 3.53
3665 4142 7.547227 GTTGCAAAGGAGTATAAATGTTCCAT 58.453 34.615 0.00 0.00 32.02 3.41
3666 4143 7.716799 TGCAAAGGAGTATAAATGTTCCATT 57.283 32.000 0.00 0.00 32.02 3.16
3667 4144 8.815565 TGCAAAGGAGTATAAATGTTCCATTA 57.184 30.769 0.00 0.00 32.02 1.90
3668 4145 8.682710 TGCAAAGGAGTATAAATGTTCCATTAC 58.317 33.333 0.00 0.00 32.02 1.89
3669 4146 8.682710 GCAAAGGAGTATAAATGTTCCATTACA 58.317 33.333 0.00 0.00 32.02 2.41
3681 4158 9.816354 AAATGTTCCATTACATTATTTACCTGC 57.184 29.630 2.75 0.00 45.44 4.85
3682 4159 7.341445 TGTTCCATTACATTATTTACCTGCC 57.659 36.000 0.00 0.00 0.00 4.85
3683 4160 6.892456 TGTTCCATTACATTATTTACCTGCCA 59.108 34.615 0.00 0.00 0.00 4.92
3684 4161 7.397476 TGTTCCATTACATTATTTACCTGCCAA 59.603 33.333 0.00 0.00 0.00 4.52
3685 4162 8.421002 GTTCCATTACATTATTTACCTGCCAAT 58.579 33.333 0.00 0.00 0.00 3.16
3686 4163 9.647918 TTCCATTACATTATTTACCTGCCAATA 57.352 29.630 0.00 0.00 0.00 1.90
3687 4164 9.821240 TCCATTACATTATTTACCTGCCAATAT 57.179 29.630 0.00 0.00 0.00 1.28
3698 4175 9.985730 ATTTACCTGCCAATATTAATGTGATTG 57.014 29.630 0.00 0.57 0.00 2.67
3699 4176 8.532186 TTACCTGCCAATATTAATGTGATTGT 57.468 30.769 0.00 0.00 0.00 2.71
3700 4177 6.808829 ACCTGCCAATATTAATGTGATTGTG 58.191 36.000 0.00 0.00 0.00 3.33
3701 4178 6.380846 ACCTGCCAATATTAATGTGATTGTGT 59.619 34.615 0.00 0.00 0.00 3.72
3702 4179 7.559533 ACCTGCCAATATTAATGTGATTGTGTA 59.440 33.333 0.00 0.00 0.00 2.90
3703 4180 8.412456 CCTGCCAATATTAATGTGATTGTGTAA 58.588 33.333 0.00 0.00 0.00 2.41
3704 4181 9.800433 CTGCCAATATTAATGTGATTGTGTAAA 57.200 29.630 0.00 0.00 0.00 2.01
3737 4214 9.758021 TTATCAAAATCTGCCCATGATATATGT 57.242 29.630 0.00 0.00 34.12 2.29
3739 4216 8.565896 TCAAAATCTGCCCATGATATATGTAC 57.434 34.615 0.00 0.00 0.00 2.90
3740 4217 7.611467 TCAAAATCTGCCCATGATATATGTACC 59.389 37.037 0.00 0.00 0.00 3.34
3741 4218 6.898171 AATCTGCCCATGATATATGTACCT 57.102 37.500 0.00 0.00 0.00 3.08
3742 4219 7.995052 AATCTGCCCATGATATATGTACCTA 57.005 36.000 0.00 0.00 0.00 3.08
3898 4381 1.757118 CGCTTATCCTCCTTCTCACCA 59.243 52.381 0.00 0.00 0.00 4.17
3902 4385 1.418334 ATCCTCCTTCTCACCATCGG 58.582 55.000 0.00 0.00 0.00 4.18
4013 4521 1.852965 CCCTCTCCCTCTCTCTCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
4022 4536 4.080356 CCCTCTCTCTCTCTTTCTCTCTCA 60.080 50.000 0.00 0.00 0.00 3.27
4108 4624 9.047371 TGTGTAGTTATCGATGTTTTCTTTTCA 57.953 29.630 8.54 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.485426 AGACATGTCATTCCTTTGCACG 59.515 45.455 27.02 0.00 0.00 5.34
19 20 4.918810 ATCGCACATAGTAGACATGTCA 57.081 40.909 27.02 10.87 34.39 3.58
21 22 6.431234 TCTCATATCGCACATAGTAGACATGT 59.569 38.462 0.00 0.00 37.09 3.21
32 33 4.948847 TGCTAACTTCTCATATCGCACAT 58.051 39.130 0.00 0.00 0.00 3.21
35 36 4.141937 ACCTTGCTAACTTCTCATATCGCA 60.142 41.667 0.00 0.00 0.00 5.10
36 37 4.372656 ACCTTGCTAACTTCTCATATCGC 58.627 43.478 0.00 0.00 0.00 4.58
37 38 6.199908 CAGAACCTTGCTAACTTCTCATATCG 59.800 42.308 0.00 0.00 0.00 2.92
69 70 2.028130 TCATGACCAACCAAACCACAC 58.972 47.619 0.00 0.00 0.00 3.82
91 92 1.736126 GTCCCGCTAAACCTTGCTAAC 59.264 52.381 0.00 0.00 0.00 2.34
95 96 0.321298 TGAGTCCCGCTAAACCTTGC 60.321 55.000 0.00 0.00 0.00 4.01
96 97 2.009774 CATGAGTCCCGCTAAACCTTG 58.990 52.381 0.00 0.00 0.00 3.61
97 98 1.906574 TCATGAGTCCCGCTAAACCTT 59.093 47.619 0.00 0.00 0.00 3.50
100 101 3.270877 ACATTCATGAGTCCCGCTAAAC 58.729 45.455 0.00 0.00 0.00 2.01
101 102 3.627395 ACATTCATGAGTCCCGCTAAA 57.373 42.857 0.00 0.00 0.00 1.85
103 104 2.499693 TCAACATTCATGAGTCCCGCTA 59.500 45.455 0.00 0.00 0.00 4.26
104 105 1.278985 TCAACATTCATGAGTCCCGCT 59.721 47.619 0.00 0.00 0.00 5.52
107 314 3.942829 TGAGTCAACATTCATGAGTCCC 58.057 45.455 8.44 0.00 43.52 4.46
116 323 3.795561 CTCACCGTTGAGTCAACATTC 57.204 47.619 30.17 8.70 43.70 2.67
162 404 2.044946 AGCGCCAGAATTCCACCC 60.045 61.111 2.29 0.00 0.00 4.61
167 409 2.223433 CCTTCAATCAGCGCCAGAATTC 60.223 50.000 2.29 0.00 0.00 2.17
180 422 0.106469 GCTCCCCCTTCCCTTCAATC 60.106 60.000 0.00 0.00 0.00 2.67
188 430 1.203063 AGAAAAACAGCTCCCCCTTCC 60.203 52.381 0.00 0.00 0.00 3.46
200 442 6.484977 ACTGCAAGAAAAACCAAAGAAAAACA 59.515 30.769 0.00 0.00 37.43 2.83
205 447 3.932089 GCACTGCAAGAAAAACCAAAGAA 59.068 39.130 0.00 0.00 37.43 2.52
222 464 0.890542 TTACTGCCCTGCAAGCACTG 60.891 55.000 6.97 2.13 38.41 3.66
223 465 0.178992 TTTACTGCCCTGCAAGCACT 60.179 50.000 6.97 2.03 38.41 4.40
234 476 1.439679 CCGTCCTTGACTTTACTGCC 58.560 55.000 0.00 0.00 0.00 4.85
237 479 0.981943 CCCCCGTCCTTGACTTTACT 59.018 55.000 0.00 0.00 0.00 2.24
250 492 1.071542 CCAAAGAAAAATTGCCCCCGT 59.928 47.619 0.00 0.00 0.00 5.28
301 545 5.473504 ACATAAAACTGATCAAAACGGCTCT 59.526 36.000 0.00 0.00 0.00 4.09
347 591 9.391006 GGAAAAAGGTAAAAAGAAGGAAACAAT 57.609 29.630 0.00 0.00 0.00 2.71
348 592 8.376270 TGGAAAAAGGTAAAAAGAAGGAAACAA 58.624 29.630 0.00 0.00 0.00 2.83
349 593 7.908453 TGGAAAAAGGTAAAAAGAAGGAAACA 58.092 30.769 0.00 0.00 0.00 2.83
350 594 8.958119 ATGGAAAAAGGTAAAAAGAAGGAAAC 57.042 30.769 0.00 0.00 0.00 2.78
396 640 3.887110 TCCAAGTCTTGTCGAGTGTCTTA 59.113 43.478 11.61 0.00 0.00 2.10
437 681 5.492895 TGAACAGATAAAATAGTTCCGCCA 58.507 37.500 0.00 0.00 39.57 5.69
470 714 5.178809 ACTTGAAAGTGCACTCGGTAATTAC 59.821 40.000 21.95 7.09 37.98 1.89
501 745 8.865327 ATTGTGCGGACAACTATACCGACTATA 61.865 40.741 25.29 0.00 44.90 1.31
502 746 8.130401 ATTGTGCGGACAACTATACCGACTAT 62.130 42.308 25.29 1.01 44.90 2.12
508 752 5.560183 GCATTATTGTGCGGACAACTATACC 60.560 44.000 25.29 11.04 44.90 2.73
530 774 4.755562 GTACTACGTACTTGCATTGCGCA 61.756 47.826 5.66 5.66 41.05 6.09
532 776 2.918600 TGTACTACGTACTTGCATTGCG 59.081 45.455 3.84 5.03 39.49 4.85
541 785 4.461781 AGGACTTTGCATGTACTACGTACT 59.538 41.667 3.56 0.00 39.49 2.73
542 786 4.741342 AGGACTTTGCATGTACTACGTAC 58.259 43.478 3.56 0.00 39.24 3.67
543 787 6.513806 TTAGGACTTTGCATGTACTACGTA 57.486 37.500 10.69 0.00 31.24 3.57
544 788 3.955650 AGGACTTTGCATGTACTACGT 57.044 42.857 3.56 0.00 0.00 3.57
545 789 6.040247 TGATTAGGACTTTGCATGTACTACG 58.960 40.000 10.69 0.00 31.24 3.51
546 790 7.843490 TTGATTAGGACTTTGCATGTACTAC 57.157 36.000 10.69 3.64 31.24 2.73
564 808 5.466728 GCGCTCATCCTCACTTTATTGATTA 59.533 40.000 0.00 0.00 0.00 1.75
579 823 1.281960 GATGCATGTGCGCTCATCC 59.718 57.895 21.29 14.02 45.83 3.51
616 860 2.217847 CGTAATATTCGAAGCCCACACG 59.782 50.000 3.35 4.85 0.00 4.49
617 861 3.192466 ACGTAATATTCGAAGCCCACAC 58.808 45.455 3.35 0.00 0.00 3.82
682 931 6.016276 ACGATGCATGTGATACTGTAGATACA 60.016 38.462 2.46 0.00 34.56 2.29
702 951 4.798907 GTCATATATTCTACGGCCACGATG 59.201 45.833 2.24 0.00 44.60 3.84
747 996 1.831652 GATACTCCCGGCCCAGGATG 61.832 65.000 9.58 6.93 31.48 3.51
748 997 1.536662 GATACTCCCGGCCCAGGAT 60.537 63.158 9.58 0.00 31.48 3.24
749 998 2.122989 GATACTCCCGGCCCAGGA 60.123 66.667 8.83 8.83 0.00 3.86
750 999 2.445845 TGATACTCCCGGCCCAGG 60.446 66.667 0.00 0.00 0.00 4.45
751 1000 2.822399 GTGATACTCCCGGCCCAG 59.178 66.667 0.00 0.00 0.00 4.45
752 1001 3.151710 CGTGATACTCCCGGCCCA 61.152 66.667 0.00 0.00 0.00 5.36
882 1169 1.466855 GCGTTCCATCTTATTTGCGC 58.533 50.000 0.00 0.00 36.97 6.09
899 1186 0.521735 GCTAGTTTCAAGGGTTGGCG 59.478 55.000 0.00 0.00 0.00 5.69
970 1257 3.726486 CGTGTGTGTGTGTGTTTTACCAG 60.726 47.826 0.00 0.00 0.00 4.00
992 1279 6.681120 GCTCCAGATATCAGACATATCTCTGC 60.681 46.154 5.32 3.82 38.80 4.26
1467 1776 1.153667 CTCGCTGAAGCTGAGGACC 60.154 63.158 13.08 0.00 37.73 4.46
1508 1817 2.768492 GCCAGCCGCTTGATCTTGG 61.768 63.158 0.00 0.00 0.00 3.61
1509 1818 2.796651 GCCAGCCGCTTGATCTTG 59.203 61.111 0.00 0.00 0.00 3.02
1510 1819 2.821366 CGCCAGCCGCTTGATCTT 60.821 61.111 0.00 0.00 34.21 2.40
1511 1820 4.845580 CCGCCAGCCGCTTGATCT 62.846 66.667 0.00 0.00 35.03 2.75
1531 1840 4.947147 TTGCACCCAGGCCGACAC 62.947 66.667 0.00 0.00 0.00 3.67
1532 1841 4.641645 CTTGCACCCAGGCCGACA 62.642 66.667 0.00 0.00 0.00 4.35
1535 1844 4.659172 TTCCTTGCACCCAGGCCG 62.659 66.667 0.00 0.00 0.00 6.13
1536 1845 2.991540 GTTCCTTGCACCCAGGCC 60.992 66.667 0.00 0.00 0.00 5.19
1537 1846 2.991540 GGTTCCTTGCACCCAGGC 60.992 66.667 0.00 0.00 0.00 4.85
1538 1847 1.152567 TTGGTTCCTTGCACCCAGG 60.153 57.895 0.00 0.00 32.71 4.45
1539 1848 0.178992 TCTTGGTTCCTTGCACCCAG 60.179 55.000 0.00 0.00 32.71 4.45
1540 1849 0.260230 TTCTTGGTTCCTTGCACCCA 59.740 50.000 0.00 0.00 32.71 4.51
1541 1850 0.961753 CTTCTTGGTTCCTTGCACCC 59.038 55.000 0.00 0.00 32.71 4.61
1542 1851 0.315251 GCTTCTTGGTTCCTTGCACC 59.685 55.000 0.00 0.00 34.52 5.01
1543 1852 0.315251 GGCTTCTTGGTTCCTTGCAC 59.685 55.000 0.00 0.00 0.00 4.57
1544 1853 0.827507 GGGCTTCTTGGTTCCTTGCA 60.828 55.000 0.00 0.00 0.00 4.08
1545 1854 0.540597 AGGGCTTCTTGGTTCCTTGC 60.541 55.000 0.00 0.00 0.00 4.01
1546 1855 1.539157 GAGGGCTTCTTGGTTCCTTG 58.461 55.000 0.00 0.00 0.00 3.61
1547 1856 0.405973 GGAGGGCTTCTTGGTTCCTT 59.594 55.000 0.00 0.00 0.00 3.36
1548 1857 0.772124 TGGAGGGCTTCTTGGTTCCT 60.772 55.000 0.00 0.00 0.00 3.36
1549 1858 0.112412 TTGGAGGGCTTCTTGGTTCC 59.888 55.000 0.00 0.00 0.00 3.62
1550 1859 1.995376 TTTGGAGGGCTTCTTGGTTC 58.005 50.000 0.00 0.00 0.00 3.62
1551 1860 2.250924 CATTTGGAGGGCTTCTTGGTT 58.749 47.619 0.00 0.00 0.00 3.67
1552 1861 1.550869 CCATTTGGAGGGCTTCTTGGT 60.551 52.381 0.00 0.00 37.39 3.67
1569 1923 0.396435 TGTTGACACGCTTCCTCCAT 59.604 50.000 0.00 0.00 0.00 3.41
1648 2002 1.492993 GCTCCTTCTTCCCCACCACT 61.493 60.000 0.00 0.00 0.00 4.00
1650 2004 2.231380 GGCTCCTTCTTCCCCACCA 61.231 63.158 0.00 0.00 0.00 4.17
1653 2007 3.009115 CCGGCTCCTTCTTCCCCA 61.009 66.667 0.00 0.00 0.00 4.96
2176 2545 1.299541 CACTTGCATATCCACCCGAC 58.700 55.000 0.00 0.00 0.00 4.79
2292 2661 1.890979 CTGCGCATCCACCAGATCC 60.891 63.158 12.24 0.00 30.59 3.36
2307 2676 3.050275 GCAAGGTCACGGTCCTGC 61.050 66.667 0.00 0.00 35.27 4.85
2484 2853 1.138859 CTACCATCATCGACCAAGGCA 59.861 52.381 0.00 0.00 0.00 4.75
2503 2872 5.155905 TCCTTCTCCTCCTTTCTGTTTACT 58.844 41.667 0.00 0.00 0.00 2.24
2512 2881 1.725182 TCCTCCTCCTTCTCCTCCTTT 59.275 52.381 0.00 0.00 0.00 3.11
2519 2888 2.243736 TCTTCTCCTCCTCCTCCTTCTC 59.756 54.545 0.00 0.00 0.00 2.87
2522 2891 3.569135 TTTCTTCTCCTCCTCCTCCTT 57.431 47.619 0.00 0.00 0.00 3.36
2534 2903 8.558973 TCCTGATTCTTCATCTTTTTCTTCTC 57.441 34.615 0.00 0.00 32.34 2.87
2546 2915 3.054582 TGCTTCTGCTCCTGATTCTTCAT 60.055 43.478 0.00 0.00 40.48 2.57
2548 2917 2.937799 CTGCTTCTGCTCCTGATTCTTC 59.062 50.000 0.00 0.00 40.48 2.87
2555 2948 0.321387 TTCTGCTGCTTCTGCTCCTG 60.321 55.000 0.00 0.00 40.48 3.86
2586 2979 7.284944 CCTGATCCTTCATCTATTTCTTTTGCT 59.715 37.037 0.00 0.00 31.92 3.91
2588 2981 8.743085 TCCTGATCCTTCATCTATTTCTTTTG 57.257 34.615 0.00 0.00 31.92 2.44
2590 2983 6.997476 GCTCCTGATCCTTCATCTATTTCTTT 59.003 38.462 0.00 0.00 31.92 2.52
2597 2996 4.190370 TCTGCTCCTGATCCTTCATCTA 57.810 45.455 0.00 0.00 31.92 1.98
2600 2999 2.158784 GCTTCTGCTCCTGATCCTTCAT 60.159 50.000 0.00 0.00 36.03 2.57
2642 3041 3.919216 TCTTCTTCTTCTACAGCTGCAC 58.081 45.455 15.27 0.00 0.00 4.57
2643 3042 4.564041 CTTCTTCTTCTTCTACAGCTGCA 58.436 43.478 15.27 0.00 0.00 4.41
2644 3043 3.370672 GCTTCTTCTTCTTCTACAGCTGC 59.629 47.826 15.27 0.00 0.00 5.25
2645 3044 4.564041 TGCTTCTTCTTCTTCTACAGCTG 58.436 43.478 13.48 13.48 0.00 4.24
2646 3045 4.881019 TGCTTCTTCTTCTTCTACAGCT 57.119 40.909 0.00 0.00 0.00 4.24
2647 3046 4.752101 TGTTGCTTCTTCTTCTTCTACAGC 59.248 41.667 0.00 0.00 0.00 4.40
2649 3048 4.752101 GCTGTTGCTTCTTCTTCTTCTACA 59.248 41.667 0.00 0.00 36.03 2.74
2659 3058 3.313526 TCTTGTTCTGCTGTTGCTTCTTC 59.686 43.478 0.00 0.00 40.48 2.87
2666 3065 3.546815 CCGTTCTTCTTGTTCTGCTGTTG 60.547 47.826 0.00 0.00 0.00 3.33
2668 3067 2.158957 TCCGTTCTTCTTGTTCTGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
2669 3068 2.483876 TCCGTTCTTCTTGTTCTGCTG 58.516 47.619 0.00 0.00 0.00 4.41
2672 3113 4.372656 ACTCTTCCGTTCTTCTTGTTCTG 58.627 43.478 0.00 0.00 0.00 3.02
2677 3118 3.510360 TCCCTACTCTTCCGTTCTTCTTG 59.490 47.826 0.00 0.00 0.00 3.02
2710 3151 2.376808 TCTTCTTCTACAGCTGCAGC 57.623 50.000 31.53 31.53 42.49 5.25
2711 3152 2.672381 GCTTCTTCTTCTACAGCTGCAG 59.328 50.000 15.27 11.27 0.00 4.41
2712 3153 2.037641 TGCTTCTTCTTCTACAGCTGCA 59.962 45.455 15.27 0.00 0.00 4.41
2713 3154 2.693069 TGCTTCTTCTTCTACAGCTGC 58.307 47.619 15.27 0.00 0.00 5.25
2714 3155 4.060900 TGTTGCTTCTTCTTCTACAGCTG 58.939 43.478 13.48 13.48 0.00 4.24
2715 3156 4.314121 CTGTTGCTTCTTCTTCTACAGCT 58.686 43.478 0.00 0.00 29.93 4.24
2716 3157 3.434984 CCTGTTGCTTCTTCTTCTACAGC 59.565 47.826 0.00 0.00 34.08 4.40
2717 3158 4.887748 TCCTGTTGCTTCTTCTTCTACAG 58.112 43.478 0.00 0.00 34.79 2.74
2718 3159 4.588951 TCTCCTGTTGCTTCTTCTTCTACA 59.411 41.667 0.00 0.00 0.00 2.74
2719 3160 5.140747 TCTCCTGTTGCTTCTTCTTCTAC 57.859 43.478 0.00 0.00 0.00 2.59
2720 3161 5.279708 CCTTCTCCTGTTGCTTCTTCTTCTA 60.280 44.000 0.00 0.00 0.00 2.10
2721 3162 4.504689 CCTTCTCCTGTTGCTTCTTCTTCT 60.505 45.833 0.00 0.00 0.00 2.85
2722 3163 3.750652 CCTTCTCCTGTTGCTTCTTCTTC 59.249 47.826 0.00 0.00 0.00 2.87
2723 3164 3.392616 TCCTTCTCCTGTTGCTTCTTCTT 59.607 43.478 0.00 0.00 0.00 2.52
2724 3165 2.975489 TCCTTCTCCTGTTGCTTCTTCT 59.025 45.455 0.00 0.00 0.00 2.85
2725 3166 3.409026 TCCTTCTCCTGTTGCTTCTTC 57.591 47.619 0.00 0.00 0.00 2.87
2726 3167 3.328931 TGATCCTTCTCCTGTTGCTTCTT 59.671 43.478 0.00 0.00 0.00 2.52
2727 3168 2.909006 TGATCCTTCTCCTGTTGCTTCT 59.091 45.455 0.00 0.00 0.00 2.85
2728 3169 3.269178 CTGATCCTTCTCCTGTTGCTTC 58.731 50.000 0.00 0.00 0.00 3.86
2729 3170 2.026449 CCTGATCCTTCTCCTGTTGCTT 60.026 50.000 0.00 0.00 0.00 3.91
2730 3171 1.558756 CCTGATCCTTCTCCTGTTGCT 59.441 52.381 0.00 0.00 0.00 3.91
2731 3172 1.556911 TCCTGATCCTTCTCCTGTTGC 59.443 52.381 0.00 0.00 0.00 4.17
2732 3173 2.419851 GCTCCTGATCCTTCTCCTGTTG 60.420 54.545 0.00 0.00 0.00 3.33
2733 3174 1.836802 GCTCCTGATCCTTCTCCTGTT 59.163 52.381 0.00 0.00 0.00 3.16
2734 3175 1.273495 TGCTCCTGATCCTTCTCCTGT 60.273 52.381 0.00 0.00 0.00 4.00
2735 3176 1.493861 TGCTCCTGATCCTTCTCCTG 58.506 55.000 0.00 0.00 0.00 3.86
2736 3177 2.493099 ATGCTCCTGATCCTTCTCCT 57.507 50.000 0.00 0.00 0.00 3.69
2737 3178 3.553922 CGTAATGCTCCTGATCCTTCTCC 60.554 52.174 0.00 0.00 0.00 3.71
2738 3179 3.553922 CCGTAATGCTCCTGATCCTTCTC 60.554 52.174 0.00 0.00 0.00 2.87
2739 3180 2.366916 CCGTAATGCTCCTGATCCTTCT 59.633 50.000 0.00 0.00 0.00 2.85
2740 3181 2.760374 CCGTAATGCTCCTGATCCTTC 58.240 52.381 0.00 0.00 0.00 3.46
2741 3182 1.202698 GCCGTAATGCTCCTGATCCTT 60.203 52.381 0.00 0.00 0.00 3.36
2742 3183 0.394565 GCCGTAATGCTCCTGATCCT 59.605 55.000 0.00 0.00 0.00 3.24
2743 3184 0.394565 AGCCGTAATGCTCCTGATCC 59.605 55.000 0.00 0.00 36.75 3.36
2744 3185 2.139118 GAAGCCGTAATGCTCCTGATC 58.861 52.381 0.00 0.00 41.80 2.92
2745 3186 1.486310 TGAAGCCGTAATGCTCCTGAT 59.514 47.619 0.00 0.00 41.80 2.90
2746 3187 0.901827 TGAAGCCGTAATGCTCCTGA 59.098 50.000 0.00 0.00 41.80 3.86
2747 3188 1.959042 ATGAAGCCGTAATGCTCCTG 58.041 50.000 0.00 0.00 41.80 3.86
2748 3189 3.324846 TGATATGAAGCCGTAATGCTCCT 59.675 43.478 0.00 0.00 41.80 3.69
2749 3190 3.664107 TGATATGAAGCCGTAATGCTCC 58.336 45.455 0.00 0.00 41.80 4.70
2750 3191 4.752101 ACTTGATATGAAGCCGTAATGCTC 59.248 41.667 1.40 0.00 41.80 4.26
2751 3192 4.512944 CACTTGATATGAAGCCGTAATGCT 59.487 41.667 1.40 0.00 45.43 3.79
2781 3222 2.877786 CGCCATGTAGTTGGATATTGCA 59.122 45.455 0.00 0.00 39.25 4.08
2871 3312 2.771372 AGAGAAGGATTTGAGCTCCTCC 59.229 50.000 12.15 14.36 42.42 4.30
2888 3329 3.576861 TCCTTGTTCTTGGACAGAGAGA 58.423 45.455 0.00 0.00 31.12 3.10
2953 3394 2.867624 ACTACTAGTGTCACGGTCCAA 58.132 47.619 5.39 0.00 0.00 3.53
3057 3516 0.250038 CCCGGTACATGAGCATCCAG 60.250 60.000 0.00 0.00 0.00 3.86
3123 3582 1.004560 CAAGCTCTTGGCGTGGAGA 60.005 57.895 1.79 0.00 44.53 3.71
3287 3749 1.663388 AATCAACGACAGCGCACGA 60.663 52.632 23.27 6.39 42.48 4.35
3292 3754 2.416547 AGGAAATCAATCAACGACAGCG 59.583 45.455 0.00 0.00 44.79 5.18
3297 3759 4.278170 ACAAGCAAGGAAATCAATCAACGA 59.722 37.500 0.00 0.00 0.00 3.85
3364 3826 1.830477 ACAAAACAGAAGCAAGGGCAA 59.170 42.857 0.00 0.00 44.61 4.52
3397 3859 2.493675 ACAGCAAGATCGACTAGCAAGA 59.506 45.455 0.00 0.00 0.00 3.02
3433 3908 1.295357 TATCTTTGGCGGCACACGTG 61.295 55.000 12.92 15.48 46.52 4.49
3456 3933 0.032515 TATCCACTGAGGCGGGAGAA 60.033 55.000 0.00 0.00 37.29 2.87
3457 3934 0.188587 ATATCCACTGAGGCGGGAGA 59.811 55.000 0.00 0.00 37.29 3.71
3458 3935 0.319728 CATATCCACTGAGGCGGGAG 59.680 60.000 0.00 0.00 37.29 4.30
3459 3936 1.758440 GCATATCCACTGAGGCGGGA 61.758 60.000 0.00 0.00 37.29 5.14
3460 3937 1.302033 GCATATCCACTGAGGCGGG 60.302 63.158 0.00 0.00 37.29 6.13
3461 3938 1.302033 GGCATATCCACTGAGGCGG 60.302 63.158 0.00 0.00 37.29 6.13
3462 3939 0.107456 AAGGCATATCCACTGAGGCG 59.893 55.000 0.00 0.00 37.29 5.52
3463 3940 3.492102 TTAAGGCATATCCACTGAGGC 57.508 47.619 0.00 0.00 37.29 4.70
3464 3941 8.517878 CAAAATATTAAGGCATATCCACTGAGG 58.482 37.037 0.00 0.00 37.29 3.86
3465 3942 8.025445 GCAAAATATTAAGGCATATCCACTGAG 58.975 37.037 0.00 0.00 37.29 3.35
3466 3943 7.725397 AGCAAAATATTAAGGCATATCCACTGA 59.275 33.333 8.16 0.00 37.29 3.41
3467 3944 7.811236 CAGCAAAATATTAAGGCATATCCACTG 59.189 37.037 8.16 0.00 37.29 3.66
3468 3945 7.506938 ACAGCAAAATATTAAGGCATATCCACT 59.493 33.333 8.16 0.00 37.29 4.00
3469 3946 7.661040 ACAGCAAAATATTAAGGCATATCCAC 58.339 34.615 8.16 0.00 37.29 4.02
3470 3947 7.838079 ACAGCAAAATATTAAGGCATATCCA 57.162 32.000 8.16 0.00 37.29 3.41
3482 3959 9.889128 AAGGCACAATTATTACAGCAAAATATT 57.111 25.926 0.00 0.00 0.00 1.28
3485 3962 8.748412 TCTAAGGCACAATTATTACAGCAAAAT 58.252 29.630 0.00 0.00 0.00 1.82
3486 3963 8.026607 GTCTAAGGCACAATTATTACAGCAAAA 58.973 33.333 0.00 0.00 0.00 2.44
3487 3964 7.393234 AGTCTAAGGCACAATTATTACAGCAAA 59.607 33.333 0.00 0.00 0.00 3.68
3488 3965 6.884295 AGTCTAAGGCACAATTATTACAGCAA 59.116 34.615 0.00 0.00 0.00 3.91
3489 3966 6.414732 AGTCTAAGGCACAATTATTACAGCA 58.585 36.000 0.00 0.00 0.00 4.41
3490 3967 6.927294 AGTCTAAGGCACAATTATTACAGC 57.073 37.500 0.00 0.00 0.00 4.40
3491 3968 8.723942 AGAAGTCTAAGGCACAATTATTACAG 57.276 34.615 0.00 0.00 0.00 2.74
3492 3969 7.769044 GGAGAAGTCTAAGGCACAATTATTACA 59.231 37.037 0.00 0.00 0.00 2.41
3493 3970 7.042658 CGGAGAAGTCTAAGGCACAATTATTAC 60.043 40.741 0.00 0.00 0.00 1.89
3494 3971 6.984474 CGGAGAAGTCTAAGGCACAATTATTA 59.016 38.462 0.00 0.00 0.00 0.98
3495 3972 5.817816 CGGAGAAGTCTAAGGCACAATTATT 59.182 40.000 0.00 0.00 0.00 1.40
3496 3973 5.360591 CGGAGAAGTCTAAGGCACAATTAT 58.639 41.667 0.00 0.00 0.00 1.28
3497 3974 4.382685 CCGGAGAAGTCTAAGGCACAATTA 60.383 45.833 0.00 0.00 0.00 1.40
3498 3975 3.600388 CGGAGAAGTCTAAGGCACAATT 58.400 45.455 0.00 0.00 0.00 2.32
3499 3976 2.093447 CCGGAGAAGTCTAAGGCACAAT 60.093 50.000 0.00 0.00 0.00 2.71
3500 3977 1.275291 CCGGAGAAGTCTAAGGCACAA 59.725 52.381 0.00 0.00 0.00 3.33
3501 3978 0.895530 CCGGAGAAGTCTAAGGCACA 59.104 55.000 0.00 0.00 0.00 4.57
3502 3979 0.460459 GCCGGAGAAGTCTAAGGCAC 60.460 60.000 5.05 0.00 43.61 5.01
3503 3980 0.614979 AGCCGGAGAAGTCTAAGGCA 60.615 55.000 21.44 0.00 45.33 4.75
3504 3981 1.400737 TAGCCGGAGAAGTCTAAGGC 58.599 55.000 5.05 15.10 44.12 4.35
3505 3982 3.447944 AGTTTAGCCGGAGAAGTCTAAGG 59.552 47.826 5.05 0.00 0.00 2.69
3506 3983 4.425520 CAGTTTAGCCGGAGAAGTCTAAG 58.574 47.826 5.05 0.00 0.00 2.18
3507 3984 3.194968 CCAGTTTAGCCGGAGAAGTCTAA 59.805 47.826 5.05 0.00 0.00 2.10
3508 3985 2.758979 CCAGTTTAGCCGGAGAAGTCTA 59.241 50.000 5.05 0.00 0.00 2.59
3509 3986 1.550976 CCAGTTTAGCCGGAGAAGTCT 59.449 52.381 5.05 0.00 0.00 3.24
3510 3987 1.549170 TCCAGTTTAGCCGGAGAAGTC 59.451 52.381 5.05 0.00 0.00 3.01
3511 3988 1.640917 TCCAGTTTAGCCGGAGAAGT 58.359 50.000 5.05 0.00 0.00 3.01
3512 3989 2.093447 ACATCCAGTTTAGCCGGAGAAG 60.093 50.000 5.05 0.00 30.84 2.85
3524 4001 8.253113 CAGAAAAATATTAAGGCACATCCAGTT 58.747 33.333 0.00 0.00 37.29 3.16
3526 4003 7.775120 ACAGAAAAATATTAAGGCACATCCAG 58.225 34.615 0.00 0.00 37.29 3.86
3572 4049 0.904649 AGGCAGGCAAAATTAAGGGC 59.095 50.000 0.00 0.00 0.00 5.19
3580 4057 1.921982 TAGCATTGAGGCAGGCAAAA 58.078 45.000 0.00 0.00 35.83 2.44
3620 4097 1.001815 CGCACGGGAATTTGTGAAAGT 60.002 47.619 9.72 0.00 38.36 2.66
3621 4098 1.001815 ACGCACGGGAATTTGTGAAAG 60.002 47.619 9.72 4.14 38.36 2.62
3622 4099 1.025812 ACGCACGGGAATTTGTGAAA 58.974 45.000 9.72 0.00 38.36 2.69
3623 4100 1.025812 AACGCACGGGAATTTGTGAA 58.974 45.000 9.72 0.00 38.36 3.18
3624 4101 0.309302 CAACGCACGGGAATTTGTGA 59.691 50.000 9.72 0.00 38.36 3.58
3625 4102 1.274798 GCAACGCACGGGAATTTGTG 61.275 55.000 0.00 2.97 39.10 3.33
3626 4103 1.007849 GCAACGCACGGGAATTTGT 60.008 52.632 0.00 0.00 0.00 2.83
3627 4104 0.596083 TTGCAACGCACGGGAATTTG 60.596 50.000 0.00 0.00 38.71 2.32
3628 4105 0.103208 TTTGCAACGCACGGGAATTT 59.897 45.000 0.00 0.00 38.71 1.82
3629 4106 0.318614 CTTTGCAACGCACGGGAATT 60.319 50.000 0.00 0.00 38.71 2.17
3630 4107 1.285641 CTTTGCAACGCACGGGAAT 59.714 52.632 0.00 0.00 38.71 3.01
3631 4108 2.718731 CTTTGCAACGCACGGGAA 59.281 55.556 0.00 0.00 38.71 3.97
3632 4109 3.283684 CCTTTGCAACGCACGGGA 61.284 61.111 0.00 0.00 38.71 5.14
3633 4110 3.254014 CTCCTTTGCAACGCACGGG 62.254 63.158 0.00 0.00 38.71 5.28
3634 4111 1.225376 TACTCCTTTGCAACGCACGG 61.225 55.000 0.00 0.00 38.71 4.94
3635 4112 0.796312 ATACTCCTTTGCAACGCACG 59.204 50.000 0.00 0.00 38.71 5.34
3636 4113 4.413495 TTTATACTCCTTTGCAACGCAC 57.587 40.909 0.00 0.00 38.71 5.34
3637 4114 4.457603 ACATTTATACTCCTTTGCAACGCA 59.542 37.500 0.00 0.00 36.47 5.24
3638 4115 4.981794 ACATTTATACTCCTTTGCAACGC 58.018 39.130 0.00 0.00 0.00 4.84
3639 4116 6.027749 GGAACATTTATACTCCTTTGCAACG 58.972 40.000 0.00 0.00 0.00 4.10
3640 4117 6.919721 TGGAACATTTATACTCCTTTGCAAC 58.080 36.000 0.00 0.00 0.00 4.17
3655 4132 9.816354 GCAGGTAAATAATGTAATGGAACATTT 57.184 29.630 7.46 0.00 45.54 2.32
3659 4136 7.341445 TGGCAGGTAAATAATGTAATGGAAC 57.659 36.000 0.00 0.00 0.00 3.62
3660 4137 7.962995 TTGGCAGGTAAATAATGTAATGGAA 57.037 32.000 0.00 0.00 0.00 3.53
3661 4138 9.821240 ATATTGGCAGGTAAATAATGTAATGGA 57.179 29.630 0.00 0.00 0.00 3.41
3672 4149 9.985730 CAATCACATTAATATTGGCAGGTAAAT 57.014 29.630 0.00 0.00 0.00 1.40
3673 4150 8.976353 ACAATCACATTAATATTGGCAGGTAAA 58.024 29.630 12.06 0.00 35.40 2.01
3674 4151 8.412456 CACAATCACATTAATATTGGCAGGTAA 58.588 33.333 12.06 0.00 35.40 2.85
3675 4152 7.559533 ACACAATCACATTAATATTGGCAGGTA 59.440 33.333 12.06 0.00 35.40 3.08
3676 4153 6.380846 ACACAATCACATTAATATTGGCAGGT 59.619 34.615 12.06 4.54 35.40 4.00
3677 4154 6.808829 ACACAATCACATTAATATTGGCAGG 58.191 36.000 12.06 4.10 35.40 4.85
3678 4155 9.800433 TTTACACAATCACATTAATATTGGCAG 57.200 29.630 12.06 6.09 35.40 4.85
3711 4188 9.758021 ACATATATCATGGGCAGATTTTGATAA 57.242 29.630 0.00 0.00 34.12 1.75
3713 4190 9.182214 GTACATATATCATGGGCAGATTTTGAT 57.818 33.333 0.00 0.00 0.00 2.57
3714 4191 7.611467 GGTACATATATCATGGGCAGATTTTGA 59.389 37.037 0.00 0.00 0.00 2.69
3715 4192 7.613022 AGGTACATATATCATGGGCAGATTTTG 59.387 37.037 0.00 0.00 0.00 2.44
3716 4193 7.702785 AGGTACATATATCATGGGCAGATTTT 58.297 34.615 0.00 0.00 0.00 1.82
3717 4194 7.276088 AGGTACATATATCATGGGCAGATTT 57.724 36.000 0.00 0.00 0.00 2.17
3718 4195 6.898171 AGGTACATATATCATGGGCAGATT 57.102 37.500 0.00 0.00 0.00 2.40
3719 4196 7.995052 TTAGGTACATATATCATGGGCAGAT 57.005 36.000 0.00 0.00 0.00 2.90
3720 4197 7.806680 TTTAGGTACATATATCATGGGCAGA 57.193 36.000 0.00 0.00 0.00 4.26
3721 4198 9.547753 GTATTTAGGTACATATATCATGGGCAG 57.452 37.037 0.00 0.00 0.00 4.85
3722 4199 9.279233 AGTATTTAGGTACATATATCATGGGCA 57.721 33.333 0.00 0.00 0.00 5.36
3734 4211 8.906867 TCGTTTGCTAGTAGTATTTAGGTACAT 58.093 33.333 0.00 0.00 0.00 2.29
3735 4212 8.279970 TCGTTTGCTAGTAGTATTTAGGTACA 57.720 34.615 0.00 0.00 0.00 2.90
3736 4213 7.378194 GCTCGTTTGCTAGTAGTATTTAGGTAC 59.622 40.741 0.00 0.00 0.00 3.34
3737 4214 7.420800 GCTCGTTTGCTAGTAGTATTTAGGTA 58.579 38.462 0.00 0.00 0.00 3.08
3738 4215 6.271566 GCTCGTTTGCTAGTAGTATTTAGGT 58.728 40.000 0.00 0.00 0.00 3.08
3739 4216 5.690857 GGCTCGTTTGCTAGTAGTATTTAGG 59.309 44.000 0.00 0.00 0.00 2.69
3740 4217 5.690857 GGGCTCGTTTGCTAGTAGTATTTAG 59.309 44.000 0.00 0.00 0.00 1.85
3741 4218 5.594926 GGGCTCGTTTGCTAGTAGTATTTA 58.405 41.667 0.00 0.00 0.00 1.40
3742 4219 4.439968 GGGCTCGTTTGCTAGTAGTATTT 58.560 43.478 0.00 0.00 0.00 1.40
3759 4236 4.683334 GTTGCAACGCACGGGCTC 62.683 66.667 14.90 0.00 38.71 4.70
4013 4521 1.827681 CGGGAGTGAGTGAGAGAGAA 58.172 55.000 0.00 0.00 0.00 2.87
4128 4644 3.725740 GCGATCCAGATTGCAAATAAACG 59.274 43.478 13.87 5.42 45.40 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.