Multiple sequence alignment - TraesCS3D01G024900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G024900 chr3D 100.000 3066 0 0 1 3066 8380193 8383258 0.000000e+00 5662
1 TraesCS3D01G024900 chr3A 92.466 1314 74 11 779 2085 12492156 12490861 0.000000e+00 1855
2 TraesCS3D01G024900 chr3A 80.761 447 46 17 105 528 12492746 12492317 2.300000e-81 313
3 TraesCS3D01G024900 chr3A 94.479 163 8 1 584 746 12492318 12492157 1.830000e-62 250
4 TraesCS3D01G024900 chr3A 86.331 139 8 6 2091 2226 12489799 12489669 1.150000e-29 141
5 TraesCS3D01G024900 chr2A 82.734 973 158 10 1065 2032 617956260 617955293 0.000000e+00 857
6 TraesCS3D01G024900 chr2B 82.528 973 158 11 1065 2031 556847320 556846354 0.000000e+00 845
7 TraesCS3D01G024900 chr2B 90.120 415 39 2 2654 3066 10603285 10603699 3.480000e-149 538
8 TraesCS3D01G024900 chr2B 92.308 182 12 2 2470 2650 414599627 414599447 1.090000e-64 257
9 TraesCS3D01G024900 chr5D 92.494 413 29 2 2654 3064 29876641 29877053 9.470000e-165 590
10 TraesCS3D01G024900 chr5D 92.973 185 12 1 2474 2658 530165239 530165422 5.040000e-68 268
11 TraesCS3D01G024900 chr1D 92.048 415 31 2 2654 3066 228825927 228825513 1.580000e-162 582
12 TraesCS3D01G024900 chr1D 89.750 400 35 5 2654 3049 418573420 418573817 9.810000e-140 507
13 TraesCS3D01G024900 chr1D 91.935 248 20 0 2229 2476 228826172 228825925 6.290000e-92 348
14 TraesCS3D01G024900 chr1D 92.079 202 15 1 2230 2431 418573142 418573342 1.800000e-72 283
15 TraesCS3D01G024900 chr5A 91.546 414 34 1 2654 3066 600950807 600951220 1.230000e-158 569
16 TraesCS3D01G024900 chr5A 91.532 248 21 0 2229 2476 600950562 600950809 2.930000e-90 342
17 TraesCS3D01G024900 chr7B 90.361 415 38 2 2654 3066 561276471 561276057 7.480000e-151 544
18 TraesCS3D01G024900 chr7B 92.742 248 16 2 2229 2476 561276714 561276469 1.050000e-94 357
19 TraesCS3D01G024900 chr7D 90.864 405 35 2 2664 3066 15501165 15501569 2.690000e-150 542
20 TraesCS3D01G024900 chr7D 90.120 415 39 2 2654 3066 513205645 513205231 3.480000e-149 538
21 TraesCS3D01G024900 chr7D 90.323 248 17 3 2229 2476 513205883 513205643 4.930000e-83 318
22 TraesCS3D01G024900 chr1B 89.209 417 41 3 2654 3066 592855407 592854991 4.530000e-143 518
23 TraesCS3D01G024900 chrUn 89.113 248 26 1 2229 2476 238126225 238125979 1.070000e-79 307
24 TraesCS3D01G024900 chrUn 89.560 182 17 2 2474 2654 237798318 237798498 2.380000e-56 230
25 TraesCS3D01G024900 chr7A 89.113 248 26 1 2229 2476 85744285 85744039 1.070000e-79 307
26 TraesCS3D01G024900 chr7A 88.618 246 26 2 2231 2476 646477336 646477093 6.430000e-77 298
27 TraesCS3D01G024900 chr2D 86.235 247 27 6 2232 2476 37471401 37471160 8.430000e-66 261
28 TraesCS3D01G024900 chr2D 91.398 186 13 3 2470 2653 641845501 641845685 5.070000e-63 252
29 TraesCS3D01G024900 chr6B 91.892 185 9 4 2474 2654 634283583 634283401 1.410000e-63 254
30 TraesCS3D01G024900 chr4B 91.304 184 14 2 2474 2656 212824916 212824734 1.830000e-62 250
31 TraesCS3D01G024900 chr4B 90.323 186 15 3 2474 2658 566446491 566446674 1.100000e-59 241
32 TraesCS3D01G024900 chr4D 90.110 182 16 2 2474 2654 17133567 17133747 5.110000e-58 235
33 TraesCS3D01G024900 chr3B 90.110 182 16 2 2474 2654 829892636 829892456 5.110000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G024900 chr3D 8380193 8383258 3065 False 5662.00 5662 100.00000 1 3066 1 chr3D.!!$F1 3065
1 TraesCS3D01G024900 chr3A 12489669 12492746 3077 True 639.75 1855 88.50925 105 2226 4 chr3A.!!$R1 2121
2 TraesCS3D01G024900 chr2A 617955293 617956260 967 True 857.00 857 82.73400 1065 2032 1 chr2A.!!$R1 967
3 TraesCS3D01G024900 chr2B 556846354 556847320 966 True 845.00 845 82.52800 1065 2031 1 chr2B.!!$R2 966
4 TraesCS3D01G024900 chr1D 228825513 228826172 659 True 465.00 582 91.99150 2229 3066 2 chr1D.!!$R1 837
5 TraesCS3D01G024900 chr1D 418573142 418573817 675 False 395.00 507 90.91450 2230 3049 2 chr1D.!!$F1 819
6 TraesCS3D01G024900 chr5A 600950562 600951220 658 False 455.50 569 91.53900 2229 3066 2 chr5A.!!$F1 837
7 TraesCS3D01G024900 chr7B 561276057 561276714 657 True 450.50 544 91.55150 2229 3066 2 chr7B.!!$R1 837
8 TraesCS3D01G024900 chr7D 513205231 513205883 652 True 428.00 538 90.22150 2229 3066 2 chr7D.!!$R1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 505 0.03213 TGTCAGACGTCTTCCACTGC 59.968 55.0 17.26 1.95 0.0 4.4 F
1504 1546 0.02811 GATCGGGCTGCAAAATCGTC 59.972 55.0 0.50 0.00 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 1787 0.108186 CCGCCAGCTTACTCACATGA 60.108 55.0 0.00 0.0 0.0 3.07 R
3034 4173 0.105964 CGTGTCACACCCTCCTGAAA 59.894 55.0 1.24 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.227134 CACCTCGCGGGGGAGATG 62.227 72.222 32.03 15.19 42.32 2.90
23 24 4.458829 ACCTCGCGGGGGAGATGA 62.459 66.667 32.03 0.00 40.03 2.92
24 25 3.610669 CCTCGCGGGGGAGATGAG 61.611 72.222 20.19 0.00 36.08 2.90
25 26 3.610669 CTCGCGGGGGAGATGAGG 61.611 72.222 6.13 0.00 36.08 3.86
26 27 4.458829 TCGCGGGGGAGATGAGGT 62.459 66.667 6.13 0.00 0.00 3.85
27 28 4.227134 CGCGGGGGAGATGAGGTG 62.227 72.222 0.00 0.00 0.00 4.00
28 29 3.866582 GCGGGGGAGATGAGGTGG 61.867 72.222 0.00 0.00 0.00 4.61
29 30 2.041922 CGGGGGAGATGAGGTGGA 60.042 66.667 0.00 0.00 0.00 4.02
30 31 2.435693 CGGGGGAGATGAGGTGGAC 61.436 68.421 0.00 0.00 0.00 4.02
31 32 2.435693 GGGGGAGATGAGGTGGACG 61.436 68.421 0.00 0.00 0.00 4.79
32 33 2.435693 GGGGAGATGAGGTGGACGG 61.436 68.421 0.00 0.00 0.00 4.79
33 34 1.686110 GGGAGATGAGGTGGACGGT 60.686 63.158 0.00 0.00 0.00 4.83
34 35 1.265454 GGGAGATGAGGTGGACGGTT 61.265 60.000 0.00 0.00 0.00 4.44
35 36 0.108138 GGAGATGAGGTGGACGGTTG 60.108 60.000 0.00 0.00 0.00 3.77
36 37 0.741221 GAGATGAGGTGGACGGTTGC 60.741 60.000 0.00 0.00 0.00 4.17
37 38 1.745489 GATGAGGTGGACGGTTGCC 60.745 63.158 0.00 0.00 0.00 4.52
55 56 4.699522 GAGCCCGCTCCCACGTTT 62.700 66.667 5.34 0.00 37.11 3.60
56 57 3.305177 GAGCCCGCTCCCACGTTTA 62.305 63.158 5.34 0.00 37.11 2.01
57 58 2.124860 GCCCGCTCCCACGTTTAT 60.125 61.111 0.00 0.00 0.00 1.40
58 59 1.144496 GCCCGCTCCCACGTTTATA 59.856 57.895 0.00 0.00 0.00 0.98
59 60 0.250166 GCCCGCTCCCACGTTTATAT 60.250 55.000 0.00 0.00 0.00 0.86
60 61 1.001181 GCCCGCTCCCACGTTTATATA 59.999 52.381 0.00 0.00 0.00 0.86
61 62 2.548493 GCCCGCTCCCACGTTTATATAA 60.548 50.000 0.00 0.00 0.00 0.98
62 63 3.731089 CCCGCTCCCACGTTTATATAAA 58.269 45.455 3.71 3.71 0.00 1.40
63 64 3.495753 CCCGCTCCCACGTTTATATAAAC 59.504 47.826 23.04 23.04 41.51 2.01
73 74 4.823790 GTTTATATAAACGTGGGGCAGG 57.176 45.455 19.74 0.00 36.58 4.85
74 75 4.201657 GTTTATATAAACGTGGGGCAGGT 58.798 43.478 19.74 0.00 36.58 4.00
75 76 2.341846 ATATAAACGTGGGGCAGGTG 57.658 50.000 0.00 0.00 32.66 4.00
76 77 1.277579 TATAAACGTGGGGCAGGTGA 58.722 50.000 0.00 0.00 32.66 4.02
77 78 0.402504 ATAAACGTGGGGCAGGTGAA 59.597 50.000 0.00 0.00 32.66 3.18
78 79 0.250553 TAAACGTGGGGCAGGTGAAG 60.251 55.000 0.00 0.00 32.66 3.02
79 80 2.976494 AAACGTGGGGCAGGTGAAGG 62.976 60.000 0.00 0.00 32.66 3.46
81 82 3.971702 GTGGGGCAGGTGAAGGCT 61.972 66.667 0.00 0.00 0.00 4.58
82 83 3.650950 TGGGGCAGGTGAAGGCTC 61.651 66.667 0.00 0.00 0.00 4.70
83 84 3.650950 GGGGCAGGTGAAGGCTCA 61.651 66.667 0.00 0.00 30.09 4.26
103 104 3.702478 GGCTTTGCCGAGATTTGAC 57.298 52.632 0.00 0.00 39.62 3.18
108 109 3.242870 GCTTTGCCGAGATTTGACATAGG 60.243 47.826 0.00 0.00 0.00 2.57
121 122 0.035439 ACATAGGAAGCCCAACCGTG 60.035 55.000 0.00 0.00 33.88 4.94
126 127 1.104577 GGAAGCCCAACCGTGAAACA 61.105 55.000 0.00 0.00 35.74 2.83
127 128 0.741915 GAAGCCCAACCGTGAAACAA 59.258 50.000 0.00 0.00 35.74 2.83
128 129 0.458260 AAGCCCAACCGTGAAACAAC 59.542 50.000 0.00 0.00 35.74 3.32
143 144 3.485463 AACAACCGTTTCCTCATCTCA 57.515 42.857 0.00 0.00 28.09 3.27
145 146 4.819105 ACAACCGTTTCCTCATCTCATA 57.181 40.909 0.00 0.00 0.00 2.15
153 156 0.622665 CCTCATCTCATATGGGCCCC 59.377 60.000 22.27 0.85 0.00 5.80
169 172 1.672356 CCCTGTCAGGTCTTTGCCG 60.672 63.158 17.85 0.00 31.93 5.69
191 195 3.916061 TTTTTGTGTGAGTGCTCGC 57.084 47.368 5.86 5.86 40.32 5.03
197 201 1.597854 TGTGAGTGCTCGCCAAAGG 60.598 57.895 9.87 0.00 39.23 3.11
208 212 1.973812 GCCAAAGGTGTGAGCCCTC 60.974 63.158 0.00 0.00 0.00 4.30
216 220 2.514824 GTGAGCCCTCGCATTCCC 60.515 66.667 4.09 0.00 39.72 3.97
217 221 2.688666 TGAGCCCTCGCATTCCCT 60.689 61.111 0.00 0.00 37.52 4.20
218 222 1.382557 TGAGCCCTCGCATTCCCTA 60.383 57.895 0.00 0.00 37.52 3.53
220 224 0.398318 GAGCCCTCGCATTCCCTATT 59.602 55.000 0.00 0.00 37.52 1.73
222 226 2.038557 GAGCCCTCGCATTCCCTATTAA 59.961 50.000 0.00 0.00 37.52 1.40
260 264 4.871933 AAAGATTGCCGAGTTTCCATTT 57.128 36.364 0.00 0.00 0.00 2.32
270 274 4.700213 CCGAGTTTCCATTTGTGGATACTT 59.300 41.667 17.57 6.09 45.71 2.24
273 277 6.816640 CGAGTTTCCATTTGTGGATACTTAGA 59.183 38.462 17.57 0.00 45.71 2.10
274 278 7.333423 CGAGTTTCCATTTGTGGATACTTAGAA 59.667 37.037 17.57 0.00 45.71 2.10
277 281 9.406828 GTTTCCATTTGTGGATACTTAGAAAAC 57.593 33.333 9.77 0.73 37.09 2.43
299 303 2.202743 ATCGCCGTCATGACACCG 60.203 61.111 24.93 23.37 0.00 4.94
302 306 2.813908 GCCGTCATGACACCGTCC 60.814 66.667 24.93 3.10 0.00 4.79
305 309 2.938086 CGTCATGACACCGTCCCCA 61.938 63.158 24.93 0.00 0.00 4.96
352 356 4.749245 AGACACCATAAGTTTCTTTGCG 57.251 40.909 0.00 0.00 31.19 4.85
354 358 4.452455 AGACACCATAAGTTTCTTTGCGAG 59.548 41.667 0.00 0.00 31.19 5.03
356 360 3.081804 ACCATAAGTTTCTTTGCGAGGG 58.918 45.455 0.00 0.00 0.00 4.30
375 379 0.591659 GAACTCGACAAAGGTTGGGC 59.408 55.000 0.00 0.00 31.43 5.36
394 417 1.402852 GCTTTGCCGAGTCCCATTTTC 60.403 52.381 0.00 0.00 0.00 2.29
402 425 2.644676 GAGTCCCATTTTCTAGGCACC 58.355 52.381 0.00 0.00 0.00 5.01
440 463 1.014564 GCCGAGTTGGTGCTCACTAC 61.015 60.000 0.00 0.00 41.21 2.73
442 465 0.732880 CGAGTTGGTGCTCACTACCG 60.733 60.000 0.00 2.62 41.18 4.02
447 470 0.601558 TGGTGCTCACTACCGAGTTC 59.398 55.000 0.00 0.00 41.18 3.01
448 471 0.456312 GGTGCTCACTACCGAGTTCG 60.456 60.000 0.00 0.00 35.33 3.95
461 484 1.396644 GAGTTCGATGATCGGCGTAC 58.603 55.000 15.48 8.32 40.88 3.67
462 485 1.002684 GAGTTCGATGATCGGCGTACT 60.003 52.381 15.48 15.50 40.88 2.73
464 487 1.517276 GTTCGATGATCGGCGTACTTG 59.483 52.381 15.48 0.00 40.88 3.16
465 488 0.736636 TCGATGATCGGCGTACTTGT 59.263 50.000 15.48 0.00 40.88 3.16
468 491 2.120232 GATGATCGGCGTACTTGTCAG 58.880 52.381 6.85 0.00 0.00 3.51
470 493 1.135489 TGATCGGCGTACTTGTCAGAC 60.135 52.381 6.85 0.00 0.00 3.51
471 494 0.179171 ATCGGCGTACTTGTCAGACG 60.179 55.000 6.85 0.00 39.55 4.18
473 496 1.063951 CGGCGTACTTGTCAGACGTC 61.064 60.000 7.70 7.70 38.80 4.34
474 497 0.240411 GGCGTACTTGTCAGACGTCT 59.760 55.000 13.58 13.58 38.15 4.18
475 498 1.335689 GGCGTACTTGTCAGACGTCTT 60.336 52.381 17.26 2.43 38.15 3.01
476 499 1.977412 GCGTACTTGTCAGACGTCTTC 59.023 52.381 17.26 12.66 38.80 2.87
477 500 2.582687 CGTACTTGTCAGACGTCTTCC 58.417 52.381 17.26 9.84 0.00 3.46
478 501 2.031420 CGTACTTGTCAGACGTCTTCCA 60.031 50.000 17.26 12.56 0.00 3.53
479 502 2.510768 ACTTGTCAGACGTCTTCCAC 57.489 50.000 17.26 13.26 0.00 4.02
480 503 2.032620 ACTTGTCAGACGTCTTCCACT 58.967 47.619 17.26 0.45 0.00 4.00
481 504 2.223829 ACTTGTCAGACGTCTTCCACTG 60.224 50.000 17.26 12.27 0.00 3.66
482 505 0.032130 TGTCAGACGTCTTCCACTGC 59.968 55.000 17.26 1.95 0.00 4.40
483 506 0.667792 GTCAGACGTCTTCCACTGCC 60.668 60.000 17.26 0.00 0.00 4.85
494 517 2.185350 CACTGCCGAGCTTCCGAT 59.815 61.111 0.00 0.00 0.00 4.18
495 518 1.437573 CACTGCCGAGCTTCCGATA 59.562 57.895 0.00 0.00 0.00 2.92
504 527 3.552294 CCGAGCTTCCGATAAAAGAACTC 59.448 47.826 0.00 0.00 0.00 3.01
528 551 4.882671 CAAATCTTGGGAACTCGGTATG 57.117 45.455 0.00 0.00 0.00 2.39
529 552 2.622064 ATCTTGGGAACTCGGTATGC 57.378 50.000 0.00 0.00 0.00 3.14
530 553 1.568504 TCTTGGGAACTCGGTATGCT 58.431 50.000 0.00 0.00 0.00 3.79
531 554 1.906574 TCTTGGGAACTCGGTATGCTT 59.093 47.619 0.00 0.00 0.00 3.91
532 555 2.009774 CTTGGGAACTCGGTATGCTTG 58.990 52.381 0.00 0.00 0.00 4.01
533 556 0.251916 TGGGAACTCGGTATGCTTGG 59.748 55.000 0.00 0.00 0.00 3.61
534 557 1.095807 GGGAACTCGGTATGCTTGGC 61.096 60.000 0.00 0.00 0.00 4.52
535 558 1.429148 GGAACTCGGTATGCTTGGCG 61.429 60.000 0.00 0.00 0.00 5.69
536 559 0.459585 GAACTCGGTATGCTTGGCGA 60.460 55.000 0.00 0.00 0.00 5.54
537 560 0.178068 AACTCGGTATGCTTGGCGAT 59.822 50.000 0.00 0.00 0.00 4.58
538 561 0.178068 ACTCGGTATGCTTGGCGATT 59.822 50.000 0.00 0.00 0.00 3.34
539 562 0.861837 CTCGGTATGCTTGGCGATTC 59.138 55.000 0.00 0.00 0.00 2.52
540 563 0.531974 TCGGTATGCTTGGCGATTCC 60.532 55.000 0.00 0.00 0.00 3.01
541 564 0.813610 CGGTATGCTTGGCGATTCCA 60.814 55.000 0.00 0.00 44.85 3.53
551 574 2.364632 TGGCGATTCCAATAGTGTTGG 58.635 47.619 12.26 12.26 43.21 3.77
552 575 2.290641 TGGCGATTCCAATAGTGTTGGT 60.291 45.455 17.26 0.07 43.21 3.67
553 576 3.055021 TGGCGATTCCAATAGTGTTGGTA 60.055 43.478 17.26 9.31 43.21 3.25
554 577 4.134563 GGCGATTCCAATAGTGTTGGTAT 58.865 43.478 17.26 13.60 40.40 2.73
555 578 4.024048 GGCGATTCCAATAGTGTTGGTATG 60.024 45.833 17.26 9.78 40.40 2.39
556 579 4.814234 GCGATTCCAATAGTGTTGGTATGA 59.186 41.667 17.26 4.39 40.40 2.15
557 580 5.295787 GCGATTCCAATAGTGTTGGTATGAA 59.704 40.000 17.26 5.86 40.40 2.57
558 581 6.183360 GCGATTCCAATAGTGTTGGTATGAAA 60.183 38.462 17.26 5.51 40.40 2.69
559 582 7.627513 GCGATTCCAATAGTGTTGGTATGAAAA 60.628 37.037 17.26 4.85 40.40 2.29
560 583 8.240682 CGATTCCAATAGTGTTGGTATGAAAAA 58.759 33.333 17.26 4.19 40.40 1.94
561 584 9.353999 GATTCCAATAGTGTTGGTATGAAAAAC 57.646 33.333 17.26 0.37 40.40 2.43
562 585 7.222000 TCCAATAGTGTTGGTATGAAAAACC 57.778 36.000 17.26 0.00 40.40 3.27
563 586 6.778069 TCCAATAGTGTTGGTATGAAAAACCA 59.222 34.615 17.26 0.00 45.26 3.67
572 595 6.849085 TGGTATGAAAAACCAAGCACATAT 57.151 33.333 0.00 0.00 43.99 1.78
573 596 7.946381 TGGTATGAAAAACCAAGCACATATA 57.054 32.000 0.00 0.00 43.99 0.86
574 597 8.532186 TGGTATGAAAAACCAAGCACATATAT 57.468 30.769 0.00 0.00 43.99 0.86
575 598 9.634021 TGGTATGAAAAACCAAGCACATATATA 57.366 29.630 0.00 0.00 43.99 0.86
615 638 8.808529 CGAACAATTTAACATACTCGAATCTCT 58.191 33.333 0.00 0.00 0.00 3.10
655 678 1.606025 TTGCATCCACGCCCACAAT 60.606 52.632 0.00 0.00 0.00 2.71
716 739 6.176896 TGCTCTGTTATTGGCACTTGTATTA 58.823 36.000 0.00 0.00 0.00 0.98
741 764 1.070577 CGAACAAGCGGCATATGCTAC 60.071 52.381 26.12 18.05 43.14 3.58
743 766 2.332063 ACAAGCGGCATATGCTACTT 57.668 45.000 26.12 23.81 43.14 2.24
744 767 2.675767 CAAGCGGCATATGCTACTTG 57.324 50.000 30.65 30.65 43.14 3.16
745 768 1.942657 CAAGCGGCATATGCTACTTGT 59.057 47.619 32.56 16.39 43.14 3.16
746 769 3.130633 CAAGCGGCATATGCTACTTGTA 58.869 45.455 32.56 0.00 43.14 2.41
747 770 3.032017 AGCGGCATATGCTACTTGTAG 57.968 47.619 26.12 9.38 41.87 2.74
748 771 1.461127 GCGGCATATGCTACTTGTAGC 59.539 52.381 26.12 21.78 43.10 3.58
749 772 2.069273 CGGCATATGCTACTTGTAGCC 58.931 52.381 26.12 11.78 42.17 3.93
750 773 2.427506 GGCATATGCTACTTGTAGCCC 58.572 52.381 26.12 16.20 42.17 5.19
751 774 2.224523 GGCATATGCTACTTGTAGCCCA 60.225 50.000 26.12 15.10 42.17 5.36
752 775 2.808543 GCATATGCTACTTGTAGCCCAC 59.191 50.000 24.44 10.13 42.17 4.61
753 776 3.403038 CATATGCTACTTGTAGCCCACC 58.597 50.000 24.44 3.59 42.17 4.61
754 777 0.546598 ATGCTACTTGTAGCCCACCC 59.453 55.000 24.44 2.99 42.17 4.61
755 778 0.546747 TGCTACTTGTAGCCCACCCT 60.547 55.000 24.44 0.00 42.17 4.34
756 779 0.178301 GCTACTTGTAGCCCACCCTC 59.822 60.000 18.90 0.00 37.11 4.30
757 780 0.831307 CTACTTGTAGCCCACCCTCC 59.169 60.000 0.00 0.00 0.00 4.30
758 781 0.416231 TACTTGTAGCCCACCCTCCT 59.584 55.000 0.00 0.00 0.00 3.69
759 782 0.475828 ACTTGTAGCCCACCCTCCTT 60.476 55.000 0.00 0.00 0.00 3.36
760 783 0.698818 CTTGTAGCCCACCCTCCTTT 59.301 55.000 0.00 0.00 0.00 3.11
761 784 1.075536 CTTGTAGCCCACCCTCCTTTT 59.924 52.381 0.00 0.00 0.00 2.27
762 785 1.154430 TGTAGCCCACCCTCCTTTTT 58.846 50.000 0.00 0.00 0.00 1.94
763 786 2.350419 TGTAGCCCACCCTCCTTTTTA 58.650 47.619 0.00 0.00 0.00 1.52
764 787 2.923629 TGTAGCCCACCCTCCTTTTTAT 59.076 45.455 0.00 0.00 0.00 1.40
765 788 2.532250 AGCCCACCCTCCTTTTTATG 57.468 50.000 0.00 0.00 0.00 1.90
766 789 0.824109 GCCCACCCTCCTTTTTATGC 59.176 55.000 0.00 0.00 0.00 3.14
767 790 1.102978 CCCACCCTCCTTTTTATGCG 58.897 55.000 0.00 0.00 0.00 4.73
768 791 1.102978 CCACCCTCCTTTTTATGCGG 58.897 55.000 0.00 0.00 0.00 5.69
769 792 1.615919 CCACCCTCCTTTTTATGCGGT 60.616 52.381 0.00 0.00 0.00 5.68
770 793 2.167662 CACCCTCCTTTTTATGCGGTT 58.832 47.619 0.00 0.00 0.00 4.44
771 794 2.163613 CACCCTCCTTTTTATGCGGTTC 59.836 50.000 0.00 0.00 0.00 3.62
772 795 2.224917 ACCCTCCTTTTTATGCGGTTCA 60.225 45.455 0.00 0.00 0.00 3.18
773 796 2.423538 CCCTCCTTTTTATGCGGTTCAG 59.576 50.000 0.00 0.00 0.00 3.02
774 797 3.081804 CCTCCTTTTTATGCGGTTCAGT 58.918 45.455 0.00 0.00 0.00 3.41
775 798 3.127030 CCTCCTTTTTATGCGGTTCAGTC 59.873 47.826 0.00 0.00 0.00 3.51
776 799 2.739913 TCCTTTTTATGCGGTTCAGTCG 59.260 45.455 0.00 0.00 0.00 4.18
777 800 2.159572 CCTTTTTATGCGGTTCAGTCGG 60.160 50.000 0.00 0.00 0.00 4.79
786 809 0.895530 GGTTCAGTCGGTCTCCATGA 59.104 55.000 0.00 0.00 0.00 3.07
881 906 1.181786 CCACCACACACCACAAAAGT 58.818 50.000 0.00 0.00 0.00 2.66
900 926 4.342862 AGTTGATGGGGTATCGATCAAG 57.657 45.455 0.00 0.00 46.32 3.02
902 928 4.408921 AGTTGATGGGGTATCGATCAAGAA 59.591 41.667 0.00 0.00 46.32 2.52
929 955 8.621532 AATATGATGCGTACAATGGTTAATCT 57.378 30.769 0.00 0.00 0.00 2.40
930 956 9.719355 AATATGATGCGTACAATGGTTAATCTA 57.281 29.630 0.00 0.00 0.00 1.98
931 957 6.838198 TGATGCGTACAATGGTTAATCTAC 57.162 37.500 0.00 0.00 0.00 2.59
935 966 9.204570 GATGCGTACAATGGTTAATCTACTATT 57.795 33.333 0.00 0.00 30.41 1.73
951 982 9.868277 AATCTACTATTTATGCTACTCTCATGC 57.132 33.333 0.00 0.00 0.00 4.06
952 983 8.409358 TCTACTATTTATGCTACTCTCATGCA 57.591 34.615 0.00 0.00 41.13 3.96
953 984 8.518702 TCTACTATTTATGCTACTCTCATGCAG 58.481 37.037 0.00 0.00 40.18 4.41
955 986 5.557576 ATTTATGCTACTCTCATGCAGGA 57.442 39.130 0.00 0.00 40.18 3.86
956 987 4.597404 TTATGCTACTCTCATGCAGGAG 57.403 45.455 22.10 22.10 40.18 3.69
957 988 0.463204 TGCTACTCTCATGCAGGAGC 59.537 55.000 23.20 17.75 42.57 4.70
958 989 0.752054 GCTACTCTCATGCAGGAGCT 59.248 55.000 23.20 12.78 42.74 4.09
959 990 1.959985 GCTACTCTCATGCAGGAGCTA 59.040 52.381 23.20 13.21 42.74 3.32
960 991 2.363680 GCTACTCTCATGCAGGAGCTAA 59.636 50.000 23.20 9.47 42.74 3.09
986 1017 1.679153 GTCCTCGATCCTCAAGACCTC 59.321 57.143 0.00 0.00 0.00 3.85
1038 1069 1.453155 GCACAATATATGCCCTCCCG 58.547 55.000 1.20 0.00 37.08 5.14
1039 1070 1.950484 GCACAATATATGCCCTCCCGG 60.950 57.143 0.00 0.00 37.08 5.73
1084 1126 3.834732 CCAAGAGGTCTACCAACGG 57.165 57.895 1.26 0.00 38.89 4.44
1085 1127 0.974383 CCAAGAGGTCTACCAACGGT 59.026 55.000 1.26 0.00 40.16 4.83
1086 1128 1.346722 CCAAGAGGTCTACCAACGGTT 59.653 52.381 1.26 0.00 37.09 4.44
1087 1129 2.612221 CCAAGAGGTCTACCAACGGTTC 60.612 54.545 1.26 0.00 37.09 3.62
1088 1130 2.005370 AGAGGTCTACCAACGGTTCA 57.995 50.000 1.26 0.00 37.09 3.18
1089 1131 1.617357 AGAGGTCTACCAACGGTTCAC 59.383 52.381 1.26 0.00 37.09 3.18
1090 1132 0.683412 AGGTCTACCAACGGTTCACC 59.317 55.000 1.26 5.45 37.09 4.02
1155 1197 1.560923 CAGATCTACCGCCACGAAAG 58.439 55.000 0.00 0.00 0.00 2.62
1318 1360 1.987855 CAGGAAGGAGCACCCCGTA 60.988 63.158 0.00 0.00 36.73 4.02
1346 1388 1.666872 GACCACCCGTTCAACTCCG 60.667 63.158 0.00 0.00 0.00 4.63
1504 1546 0.028110 GATCGGGCTGCAAAATCGTC 59.972 55.000 0.50 0.00 0.00 4.20
1550 1593 1.739562 CTGGTCTCGCAGTGGAAGC 60.740 63.158 0.00 0.00 0.00 3.86
1663 1706 2.107204 GCCATACTGGGATCATGTCCTT 59.893 50.000 12.27 3.14 46.91 3.36
1669 1712 2.713167 CTGGGATCATGTCCTTGGGTAT 59.287 50.000 12.27 0.00 46.91 2.73
1738 1781 1.486726 GAAGACATGATTCGGGACCCT 59.513 52.381 9.41 0.00 0.00 4.34
1751 1794 3.315142 GACCCTGCGGCTCATGTGA 62.315 63.158 0.00 0.00 0.00 3.58
1882 1925 0.895559 CCACCAAGGAAGGCAAGACC 60.896 60.000 0.00 0.00 41.22 3.85
1894 1937 1.880894 CAAGACCGAGCTCGTGGTA 59.119 57.895 32.41 0.00 38.99 3.25
1963 2006 2.268920 GAGAACCATCTGCCGCCA 59.731 61.111 0.00 0.00 35.54 5.69
1996 2039 1.883084 GATCGACGCCATCACCCAC 60.883 63.158 0.00 0.00 0.00 4.61
2011 2054 2.671070 CACGCCAGGTTCAGGGAT 59.329 61.111 0.00 0.00 0.00 3.85
2033 2076 1.680522 CGGCCTCCATGTCTAGCTGT 61.681 60.000 0.00 0.00 0.00 4.40
2043 2086 1.203187 TGTCTAGCTGTCCAGGAGGTT 60.203 52.381 0.00 0.00 35.89 3.50
2054 2097 5.370679 TGTCCAGGAGGTTACAGTAAAAAC 58.629 41.667 0.00 0.00 35.89 2.43
2055 2098 4.450080 GTCCAGGAGGTTACAGTAAAAACG 59.550 45.833 0.00 0.00 35.89 3.60
2057 2100 4.818005 CCAGGAGGTTACAGTAAAAACGTT 59.182 41.667 0.00 0.00 0.00 3.99
2060 2103 4.507756 GGAGGTTACAGTAAAAACGTTCGT 59.492 41.667 0.00 0.00 0.00 3.85
2085 2128 9.185192 GTTTGGAAACTCATCTTGAATAAGTTG 57.815 33.333 0.00 0.00 35.76 3.16
2086 2129 7.452880 TGGAAACTCATCTTGAATAAGTTGG 57.547 36.000 0.00 0.00 35.36 3.77
2088 2131 7.723616 TGGAAACTCATCTTGAATAAGTTGGAA 59.276 33.333 0.00 0.00 35.36 3.53
2089 2132 8.239998 GGAAACTCATCTTGAATAAGTTGGAAG 58.760 37.037 0.00 0.00 35.36 3.46
2117 3217 9.090103 AGTATATCTGCATGTTACTTTAGCCTA 57.910 33.333 0.00 0.00 0.00 3.93
2126 3226 6.276832 TGTTACTTTAGCCTACACCTACAG 57.723 41.667 0.00 0.00 0.00 2.74
2127 3227 5.776716 TGTTACTTTAGCCTACACCTACAGT 59.223 40.000 0.00 0.00 32.38 3.55
2128 3228 6.947733 TGTTACTTTAGCCTACACCTACAGTA 59.052 38.462 0.00 0.00 30.75 2.74
2129 3229 5.911378 ACTTTAGCCTACACCTACAGTAC 57.089 43.478 0.00 0.00 27.32 2.73
2140 3240 4.197750 CACCTACAGTACGTCCTACTCAT 58.802 47.826 0.00 0.00 32.90 2.90
2148 3248 2.515854 ACGTCCTACTCATGACAGTGT 58.484 47.619 0.00 0.00 0.00 3.55
2161 3261 2.092968 TGACAGTGTATTCCCATGGAGC 60.093 50.000 15.22 0.00 31.21 4.70
2163 3263 1.134401 CAGTGTATTCCCATGGAGCGT 60.134 52.381 15.22 0.00 31.21 5.07
2164 3264 1.139058 AGTGTATTCCCATGGAGCGTC 59.861 52.381 15.22 1.20 31.21 5.19
2165 3265 0.104120 TGTATTCCCATGGAGCGTCG 59.896 55.000 15.22 0.00 31.21 5.12
2166 3266 0.387929 GTATTCCCATGGAGCGTCGA 59.612 55.000 15.22 0.00 31.21 4.20
2167 3267 1.000955 GTATTCCCATGGAGCGTCGAT 59.999 52.381 15.22 0.00 31.21 3.59
2479 3616 3.307379 GGCCCTGGACGACATAATC 57.693 57.895 0.00 0.00 0.00 1.75
2492 3629 4.630894 GACATAATCGGTTTGATGCCAA 57.369 40.909 0.00 0.00 37.39 4.52
2493 3630 4.992688 GACATAATCGGTTTGATGCCAAA 58.007 39.130 0.00 0.00 39.74 3.28
2494 3631 5.398603 ACATAATCGGTTTGATGCCAAAA 57.601 34.783 0.00 0.00 43.18 2.44
2495 3632 5.410067 ACATAATCGGTTTGATGCCAAAAG 58.590 37.500 0.00 0.00 43.18 2.27
2496 3633 5.047377 ACATAATCGGTTTGATGCCAAAAGT 60.047 36.000 0.00 0.00 43.18 2.66
2497 3634 4.335400 AATCGGTTTGATGCCAAAAGTT 57.665 36.364 0.00 0.00 43.18 2.66
2498 3635 3.090952 TCGGTTTGATGCCAAAAGTTG 57.909 42.857 0.00 0.00 43.18 3.16
2499 3636 5.037366 AATCGGTTTGATGCCAAAAGTTGG 61.037 41.667 2.50 2.50 44.93 3.77
2500 3637 7.193717 AATCGGTTTGATGCCAAAAGTTGGA 62.194 40.000 11.22 0.00 45.11 3.53
2501 3638 8.582245 AATCGGTTTGATGCCAAAAGTTGGAA 62.582 38.462 11.22 0.01 45.11 3.53
2533 3670 4.464069 TTGGCAACTACCAAATATTGGC 57.536 40.909 9.00 2.72 46.65 4.52
2534 3671 4.093011 TTGGCAACTACCAAATATTGGCT 58.907 39.130 9.00 0.22 46.65 4.75
2535 3672 5.265191 TTGGCAACTACCAAATATTGGCTA 58.735 37.500 9.00 0.90 46.65 3.93
2536 3673 5.359576 TTGGCAACTACCAAATATTGGCTAG 59.640 40.000 9.00 11.41 46.65 3.42
2537 3674 6.805251 TTGGCAACTACCAAATATTGGCTAGA 60.805 38.462 17.70 1.75 46.65 2.43
2538 3675 8.549952 TTGGCAACTACCAAATATTGGCTAGAG 61.550 40.741 17.70 10.38 46.65 2.43
2547 3684 7.088905 CCAAATATTGGCTAGAGATTGATTGC 58.911 38.462 0.00 0.00 45.17 3.56
2548 3685 7.039923 CCAAATATTGGCTAGAGATTGATTGCT 60.040 37.037 0.00 0.00 45.17 3.91
2549 3686 8.358148 CAAATATTGGCTAGAGATTGATTGCTT 58.642 33.333 0.00 0.00 0.00 3.91
2550 3687 5.769484 ATTGGCTAGAGATTGATTGCTTG 57.231 39.130 0.00 0.00 0.00 4.01
2551 3688 2.947652 TGGCTAGAGATTGATTGCTTGC 59.052 45.455 0.00 0.00 0.00 4.01
2552 3689 2.292845 GGCTAGAGATTGATTGCTTGCC 59.707 50.000 0.00 0.00 40.80 4.52
2553 3690 2.947652 GCTAGAGATTGATTGCTTGCCA 59.052 45.455 0.00 0.00 0.00 4.92
2554 3691 3.379372 GCTAGAGATTGATTGCTTGCCAA 59.621 43.478 0.00 0.00 37.94 4.52
2555 3692 4.037684 GCTAGAGATTGATTGCTTGCCAAT 59.962 41.667 0.00 0.00 46.57 3.16
2556 3693 5.451520 GCTAGAGATTGATTGCTTGCCAATT 60.452 40.000 0.00 0.00 44.02 2.32
2557 3694 5.007385 AGAGATTGATTGCTTGCCAATTC 57.993 39.130 0.00 0.00 44.02 2.17
2558 3695 4.710375 AGAGATTGATTGCTTGCCAATTCT 59.290 37.500 0.00 0.00 44.02 2.40
2559 3696 5.007385 AGATTGATTGCTTGCCAATTCTC 57.993 39.130 0.00 0.00 44.02 2.87
2560 3697 4.464951 AGATTGATTGCTTGCCAATTCTCA 59.535 37.500 0.00 0.00 44.02 3.27
2561 3698 3.581024 TGATTGCTTGCCAATTCTCAC 57.419 42.857 0.00 0.00 44.02 3.51
2562 3699 3.159472 TGATTGCTTGCCAATTCTCACT 58.841 40.909 0.00 0.00 44.02 3.41
2563 3700 3.057104 TGATTGCTTGCCAATTCTCACTG 60.057 43.478 0.00 0.00 44.02 3.66
2564 3701 0.599558 TGCTTGCCAATTCTCACTGC 59.400 50.000 0.00 0.00 0.00 4.40
2565 3702 0.108945 GCTTGCCAATTCTCACTGCC 60.109 55.000 0.00 0.00 0.00 4.85
2566 3703 1.250328 CTTGCCAATTCTCACTGCCA 58.750 50.000 0.00 0.00 0.00 4.92
2567 3704 1.614903 CTTGCCAATTCTCACTGCCAA 59.385 47.619 0.00 0.00 0.00 4.52
2568 3705 1.927487 TGCCAATTCTCACTGCCAAT 58.073 45.000 0.00 0.00 0.00 3.16
2569 3706 1.820519 TGCCAATTCTCACTGCCAATC 59.179 47.619 0.00 0.00 0.00 2.67
2570 3707 2.097825 GCCAATTCTCACTGCCAATCT 58.902 47.619 0.00 0.00 0.00 2.40
2571 3708 2.098770 GCCAATTCTCACTGCCAATCTC 59.901 50.000 0.00 0.00 0.00 2.75
2572 3709 3.349927 CCAATTCTCACTGCCAATCTCA 58.650 45.455 0.00 0.00 0.00 3.27
2573 3710 3.128242 CCAATTCTCACTGCCAATCTCAC 59.872 47.826 0.00 0.00 0.00 3.51
2574 3711 3.708403 ATTCTCACTGCCAATCTCACA 57.292 42.857 0.00 0.00 0.00 3.58
2575 3712 3.490439 TTCTCACTGCCAATCTCACAA 57.510 42.857 0.00 0.00 0.00 3.33
2576 3713 3.490439 TCTCACTGCCAATCTCACAAA 57.510 42.857 0.00 0.00 0.00 2.83
2577 3714 3.819368 TCTCACTGCCAATCTCACAAAA 58.181 40.909 0.00 0.00 0.00 2.44
2578 3715 4.206375 TCTCACTGCCAATCTCACAAAAA 58.794 39.130 0.00 0.00 0.00 1.94
2579 3716 4.276678 TCTCACTGCCAATCTCACAAAAAG 59.723 41.667 0.00 0.00 0.00 2.27
2580 3717 3.953612 TCACTGCCAATCTCACAAAAAGT 59.046 39.130 0.00 0.00 0.00 2.66
2581 3718 4.402155 TCACTGCCAATCTCACAAAAAGTT 59.598 37.500 0.00 0.00 0.00 2.66
2582 3719 4.505191 CACTGCCAATCTCACAAAAAGTTG 59.495 41.667 0.00 0.00 40.84 3.16
2584 3721 4.681744 TGCCAATCTCACAAAAAGTTGTC 58.318 39.130 0.00 0.00 45.00 3.18
2585 3722 4.159321 TGCCAATCTCACAAAAAGTTGTCA 59.841 37.500 0.00 0.00 45.00 3.58
2586 3723 5.108517 GCCAATCTCACAAAAAGTTGTCAA 58.891 37.500 0.00 0.00 45.00 3.18
2587 3724 5.580297 GCCAATCTCACAAAAAGTTGTCAAA 59.420 36.000 0.00 0.00 45.00 2.69
2588 3725 6.258507 GCCAATCTCACAAAAAGTTGTCAAAT 59.741 34.615 0.00 0.00 45.00 2.32
2589 3726 7.623770 CCAATCTCACAAAAAGTTGTCAAATG 58.376 34.615 0.00 0.00 45.00 2.32
2590 3727 7.278424 CCAATCTCACAAAAAGTTGTCAAATGT 59.722 33.333 0.00 0.00 45.00 2.71
2591 3728 8.658609 CAATCTCACAAAAAGTTGTCAAATGTT 58.341 29.630 0.00 0.00 45.00 2.71
2592 3729 7.579589 TCTCACAAAAAGTTGTCAAATGTTG 57.420 32.000 7.70 7.70 45.00 3.33
2593 3730 6.589523 TCTCACAAAAAGTTGTCAAATGTTGG 59.410 34.615 11.95 2.62 45.00 3.77
2594 3731 5.121454 TCACAAAAAGTTGTCAAATGTTGGC 59.879 36.000 11.95 0.00 45.00 4.52
2595 3732 4.999950 ACAAAAAGTTGTCAAATGTTGGCA 59.000 33.333 11.95 0.00 45.00 4.92
2609 3746 4.612932 TGTTGGCAACTTTTGATTTTGC 57.387 36.364 28.71 0.42 44.05 3.68
2614 3751 4.730600 GCAACTTTTGATTTTGCCGAAT 57.269 36.364 0.00 0.00 39.82 3.34
2615 3752 4.456914 GCAACTTTTGATTTTGCCGAATG 58.543 39.130 0.00 0.00 39.82 2.67
2616 3753 4.024977 GCAACTTTTGATTTTGCCGAATGT 60.025 37.500 0.00 0.00 39.82 2.71
2617 3754 5.503846 GCAACTTTTGATTTTGCCGAATGTT 60.504 36.000 0.00 0.00 39.82 2.71
2618 3755 5.655893 ACTTTTGATTTTGCCGAATGTTG 57.344 34.783 0.00 0.00 0.00 3.33
2619 3756 4.511082 ACTTTTGATTTTGCCGAATGTTGG 59.489 37.500 0.00 0.00 0.00 3.77
2626 3763 3.364442 CCGAATGTTGGCTTGCCA 58.636 55.556 10.65 10.65 0.00 4.92
2627 3764 1.664873 CCGAATGTTGGCTTGCCAA 59.335 52.632 21.59 21.59 0.00 4.52
2628 3765 0.033228 CCGAATGTTGGCTTGCCAAA 59.967 50.000 26.12 17.09 0.00 3.28
2629 3766 1.338011 CCGAATGTTGGCTTGCCAAAT 60.338 47.619 26.12 18.32 0.00 2.32
2630 3767 1.727880 CGAATGTTGGCTTGCCAAATG 59.272 47.619 26.12 11.95 0.00 2.32
2631 3768 2.769893 GAATGTTGGCTTGCCAAATGT 58.230 42.857 26.12 14.85 0.00 2.71
2632 3769 2.934886 ATGTTGGCTTGCCAAATGTT 57.065 40.000 26.12 10.36 0.00 2.71
2633 3770 1.950828 TGTTGGCTTGCCAAATGTTG 58.049 45.000 26.12 0.00 0.00 3.33
2654 3791 4.981806 GGTAGCAAACCAATTATGCTCA 57.018 40.909 2.36 0.00 46.98 4.26
2655 3792 5.520376 GGTAGCAAACCAATTATGCTCAT 57.480 39.130 2.36 0.00 46.98 2.90
2656 3793 6.633500 GGTAGCAAACCAATTATGCTCATA 57.367 37.500 2.36 0.00 46.98 2.15
2660 3797 7.174107 AGCAAACCAATTATGCTCATAGTTT 57.826 32.000 0.00 0.00 46.98 2.66
2754 3893 2.202703 GGCACGGCGTCTATTCGT 60.203 61.111 10.85 0.00 37.64 3.85
2835 3974 1.621992 CTAAGATCTCCGGCCTGCTA 58.378 55.000 0.00 0.00 0.00 3.49
2868 4007 1.305930 GGTGATGCGGTCCTTTGGTC 61.306 60.000 0.00 0.00 0.00 4.02
2916 4055 0.394352 GTTGCCGACCCTCATGGATT 60.394 55.000 0.00 0.00 38.00 3.01
2938 4077 1.084370 GCCATTGACGAGTTCCGGAG 61.084 60.000 3.34 0.00 43.93 4.63
2986 4125 3.194755 TGCTTGACGCCTGTAGATTTCTA 59.805 43.478 0.00 0.00 38.05 2.10
3025 4164 1.610624 CGTGTGCACCCCTATTTCAGT 60.611 52.381 15.69 0.00 0.00 3.41
3034 4173 2.840651 CCCCTATTTCAGTCTGAGTGGT 59.159 50.000 12.31 2.67 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.610669 CCTCATCTCCCCCGCGAG 61.611 72.222 8.23 0.00 0.00 5.03
9 10 4.458829 ACCTCATCTCCCCCGCGA 62.459 66.667 8.23 0.00 0.00 5.87
10 11 4.227134 CACCTCATCTCCCCCGCG 62.227 72.222 0.00 0.00 0.00 6.46
11 12 3.866582 CCACCTCATCTCCCCCGC 61.867 72.222 0.00 0.00 0.00 6.13
12 13 2.041922 TCCACCTCATCTCCCCCG 60.042 66.667 0.00 0.00 0.00 5.73
13 14 2.435693 CGTCCACCTCATCTCCCCC 61.436 68.421 0.00 0.00 0.00 5.40
14 15 2.435693 CCGTCCACCTCATCTCCCC 61.436 68.421 0.00 0.00 0.00 4.81
15 16 1.265454 AACCGTCCACCTCATCTCCC 61.265 60.000 0.00 0.00 0.00 4.30
16 17 0.108138 CAACCGTCCACCTCATCTCC 60.108 60.000 0.00 0.00 0.00 3.71
17 18 0.741221 GCAACCGTCCACCTCATCTC 60.741 60.000 0.00 0.00 0.00 2.75
18 19 1.296715 GCAACCGTCCACCTCATCT 59.703 57.895 0.00 0.00 0.00 2.90
19 20 1.745489 GGCAACCGTCCACCTCATC 60.745 63.158 0.00 0.00 0.00 2.92
20 21 2.351276 GGCAACCGTCCACCTCAT 59.649 61.111 0.00 0.00 0.00 2.90
21 22 4.308458 CGGCAACCGTCCACCTCA 62.308 66.667 0.00 0.00 42.73 3.86
38 39 2.588856 ATAAACGTGGGAGCGGGCTC 62.589 60.000 12.17 12.17 42.04 4.70
39 40 1.332144 TATAAACGTGGGAGCGGGCT 61.332 55.000 0.00 0.00 35.98 5.19
40 41 0.250166 ATATAAACGTGGGAGCGGGC 60.250 55.000 0.00 0.00 35.98 6.13
41 42 3.389925 TTATATAAACGTGGGAGCGGG 57.610 47.619 0.00 0.00 35.98 6.13
42 43 4.720530 GTTTATATAAACGTGGGAGCGG 57.279 45.455 19.74 0.00 36.58 5.52
52 53 4.035909 CACCTGCCCCACGTTTATATAAAC 59.964 45.833 23.04 23.04 41.51 2.01
53 54 4.080469 TCACCTGCCCCACGTTTATATAAA 60.080 41.667 3.71 3.71 0.00 1.40
54 55 3.455177 TCACCTGCCCCACGTTTATATAA 59.545 43.478 0.00 0.00 0.00 0.98
55 56 3.039743 TCACCTGCCCCACGTTTATATA 58.960 45.455 0.00 0.00 0.00 0.86
56 57 1.841277 TCACCTGCCCCACGTTTATAT 59.159 47.619 0.00 0.00 0.00 0.86
57 58 1.277579 TCACCTGCCCCACGTTTATA 58.722 50.000 0.00 0.00 0.00 0.98
58 59 0.402504 TTCACCTGCCCCACGTTTAT 59.597 50.000 0.00 0.00 0.00 1.40
59 60 0.250553 CTTCACCTGCCCCACGTTTA 60.251 55.000 0.00 0.00 0.00 2.01
60 61 1.528309 CTTCACCTGCCCCACGTTT 60.528 57.895 0.00 0.00 0.00 3.60
61 62 2.113139 CTTCACCTGCCCCACGTT 59.887 61.111 0.00 0.00 0.00 3.99
62 63 3.953775 CCTTCACCTGCCCCACGT 61.954 66.667 0.00 0.00 0.00 4.49
64 65 3.927481 GAGCCTTCACCTGCCCCAC 62.927 68.421 0.00 0.00 0.00 4.61
65 66 3.650950 GAGCCTTCACCTGCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
66 67 3.650950 TGAGCCTTCACCTGCCCC 61.651 66.667 0.00 0.00 0.00 5.80
67 68 2.360475 GTGAGCCTTCACCTGCCC 60.360 66.667 0.00 0.00 46.47 5.36
74 75 2.260869 GCAAAGCCGTGAGCCTTCA 61.261 57.895 0.00 0.00 45.47 3.02
75 76 2.563427 GCAAAGCCGTGAGCCTTC 59.437 61.111 0.00 0.00 45.47 3.46
76 77 2.985847 GGCAAAGCCGTGAGCCTT 60.986 61.111 0.00 0.00 45.47 4.35
85 86 0.881118 TGTCAAATCTCGGCAAAGCC 59.119 50.000 0.00 0.00 46.75 4.35
86 87 2.927553 ATGTCAAATCTCGGCAAAGC 57.072 45.000 0.00 0.00 0.00 3.51
87 88 4.191544 TCCTATGTCAAATCTCGGCAAAG 58.808 43.478 0.00 0.00 0.00 2.77
88 89 4.214986 TCCTATGTCAAATCTCGGCAAA 57.785 40.909 0.00 0.00 0.00 3.68
89 90 3.904800 TCCTATGTCAAATCTCGGCAA 57.095 42.857 0.00 0.00 0.00 4.52
90 91 3.797039 CTTCCTATGTCAAATCTCGGCA 58.203 45.455 0.00 0.00 0.00 5.69
91 92 2.545946 GCTTCCTATGTCAAATCTCGGC 59.454 50.000 0.00 0.00 0.00 5.54
92 93 3.134458 GGCTTCCTATGTCAAATCTCGG 58.866 50.000 0.00 0.00 0.00 4.63
93 94 3.134458 GGGCTTCCTATGTCAAATCTCG 58.866 50.000 0.00 0.00 0.00 4.04
94 95 4.156455 TGGGCTTCCTATGTCAAATCTC 57.844 45.455 0.00 0.00 0.00 2.75
95 96 4.273318 GTTGGGCTTCCTATGTCAAATCT 58.727 43.478 0.00 0.00 0.00 2.40
96 97 3.381590 GGTTGGGCTTCCTATGTCAAATC 59.618 47.826 0.00 0.00 0.00 2.17
97 98 3.365472 GGTTGGGCTTCCTATGTCAAAT 58.635 45.455 0.00 0.00 0.00 2.32
98 99 2.802719 GGTTGGGCTTCCTATGTCAAA 58.197 47.619 0.00 0.00 0.00 2.69
99 100 1.339631 CGGTTGGGCTTCCTATGTCAA 60.340 52.381 0.00 0.00 0.00 3.18
100 101 0.251916 CGGTTGGGCTTCCTATGTCA 59.748 55.000 0.00 0.00 0.00 3.58
101 102 0.252197 ACGGTTGGGCTTCCTATGTC 59.748 55.000 0.00 0.00 0.00 3.06
102 103 0.035439 CACGGTTGGGCTTCCTATGT 60.035 55.000 0.00 0.00 0.00 2.29
103 104 0.251916 TCACGGTTGGGCTTCCTATG 59.748 55.000 0.00 0.00 0.00 2.23
108 109 0.741915 TTGTTTCACGGTTGGGCTTC 59.258 50.000 0.00 0.00 0.00 3.86
126 127 4.444876 CCCATATGAGATGAGGAAACGGTT 60.445 45.833 3.65 0.00 0.00 4.44
127 128 3.071602 CCCATATGAGATGAGGAAACGGT 59.928 47.826 3.65 0.00 0.00 4.83
128 129 3.668447 CCCATATGAGATGAGGAAACGG 58.332 50.000 3.65 0.00 0.00 4.44
135 136 1.281287 CAGGGGCCCATATGAGATGAG 59.719 57.143 27.72 0.00 0.00 2.90
143 144 1.006092 ACCTGACAGGGGCCCATAT 59.994 57.895 27.72 4.95 40.58 1.78
145 146 3.017581 GACCTGACAGGGGCCCAT 61.018 66.667 27.72 16.07 40.58 4.00
153 156 0.034059 ACTCGGCAAAGACCTGACAG 59.966 55.000 0.00 0.00 0.00 3.51
183 187 1.893808 CACACCTTTGGCGAGCACT 60.894 57.895 0.00 0.00 0.00 4.40
186 190 2.970974 GCTCACACCTTTGGCGAGC 61.971 63.158 0.00 0.00 42.04 5.03
189 193 3.365265 GGGCTCACACCTTTGGCG 61.365 66.667 0.00 0.00 0.00 5.69
191 195 1.672356 CGAGGGCTCACACCTTTGG 60.672 63.158 0.00 0.00 38.79 3.28
197 201 2.109126 GGAATGCGAGGGCTCACAC 61.109 63.158 0.00 0.00 40.82 3.82
228 232 5.300792 ACTCGGCAATCTTTTGACCTTTTAA 59.699 36.000 0.00 0.00 37.61 1.52
260 264 7.223971 GCGATGTATGTTTTCTAAGTATCCACA 59.776 37.037 0.00 0.00 0.00 4.17
270 274 4.112716 TGACGGCGATGTATGTTTTCTA 57.887 40.909 16.62 0.00 0.00 2.10
273 277 3.063452 GTCATGACGGCGATGTATGTTTT 59.937 43.478 16.62 0.00 0.00 2.43
274 278 2.607635 GTCATGACGGCGATGTATGTTT 59.392 45.455 16.62 0.00 0.00 2.83
277 281 1.522676 GTGTCATGACGGCGATGTATG 59.477 52.381 20.54 12.04 0.00 2.39
281 285 2.516589 CGGTGTCATGACGGCGATG 61.517 63.158 20.54 8.26 0.00 3.84
283 287 3.620300 GACGGTGTCATGACGGCGA 62.620 63.158 20.54 0.07 32.09 5.54
284 288 3.179265 GACGGTGTCATGACGGCG 61.179 66.667 20.54 4.80 32.09 6.46
340 344 2.879026 GAGTTCCCTCGCAAAGAAACTT 59.121 45.455 0.00 0.00 0.00 2.66
341 345 2.495084 GAGTTCCCTCGCAAAGAAACT 58.505 47.619 0.00 0.00 0.00 2.66
352 356 2.143925 CAACCTTTGTCGAGTTCCCTC 58.856 52.381 0.00 0.00 0.00 4.30
354 358 1.235724 CCAACCTTTGTCGAGTTCCC 58.764 55.000 0.00 0.00 0.00 3.97
356 360 0.591659 GCCCAACCTTTGTCGAGTTC 59.408 55.000 0.00 0.00 0.00 3.01
375 379 2.162681 AGAAAATGGGACTCGGCAAAG 58.837 47.619 0.00 0.00 0.00 2.77
383 387 1.065418 CGGTGCCTAGAAAATGGGACT 60.065 52.381 0.00 0.00 43.02 3.85
386 390 0.751643 CCCGGTGCCTAGAAAATGGG 60.752 60.000 0.00 0.00 0.00 4.00
387 391 1.384222 GCCCGGTGCCTAGAAAATGG 61.384 60.000 0.00 0.00 0.00 3.16
389 393 0.039035 TTGCCCGGTGCCTAGAAAAT 59.961 50.000 11.72 0.00 40.16 1.82
394 417 0.466189 ATCATTTGCCCGGTGCCTAG 60.466 55.000 11.72 1.27 40.16 3.02
402 425 0.247655 CGAACGACATCATTTGCCCG 60.248 55.000 0.00 0.00 0.00 6.13
442 465 1.002684 AGTACGCCGATCATCGAACTC 60.003 52.381 9.16 0.00 43.74 3.01
447 470 1.121240 GACAAGTACGCCGATCATCG 58.879 55.000 0.00 0.00 40.07 3.84
448 471 2.120232 CTGACAAGTACGCCGATCATC 58.880 52.381 0.00 0.00 0.00 2.92
457 480 2.031420 TGGAAGACGTCTGACAAGTACG 60.031 50.000 20.85 0.00 42.17 3.67
461 484 2.398498 CAGTGGAAGACGTCTGACAAG 58.602 52.381 20.85 12.72 0.00 3.16
462 485 1.538204 GCAGTGGAAGACGTCTGACAA 60.538 52.381 20.85 7.43 0.00 3.18
464 487 0.667792 GGCAGTGGAAGACGTCTGAC 60.668 60.000 20.85 15.77 0.00 3.51
465 488 1.666011 GGCAGTGGAAGACGTCTGA 59.334 57.895 20.85 3.23 0.00 3.27
468 491 1.444553 CTCGGCAGTGGAAGACGTC 60.445 63.158 7.70 7.70 0.00 4.34
470 493 2.771763 AAGCTCGGCAGTGGAAGACG 62.772 60.000 0.00 0.00 0.00 4.18
471 494 1.004440 AAGCTCGGCAGTGGAAGAC 60.004 57.895 0.00 0.00 0.00 3.01
473 496 1.743252 GGAAGCTCGGCAGTGGAAG 60.743 63.158 0.00 0.00 0.00 3.46
474 497 2.347490 GGAAGCTCGGCAGTGGAA 59.653 61.111 0.00 0.00 0.00 3.53
475 498 4.069232 CGGAAGCTCGGCAGTGGA 62.069 66.667 0.00 0.00 0.00 4.02
476 499 2.016393 TATCGGAAGCTCGGCAGTGG 62.016 60.000 0.00 0.00 0.00 4.00
477 500 0.179111 TTATCGGAAGCTCGGCAGTG 60.179 55.000 0.00 0.00 0.00 3.66
478 501 0.535335 TTTATCGGAAGCTCGGCAGT 59.465 50.000 0.00 0.00 0.00 4.40
479 502 1.594862 CTTTTATCGGAAGCTCGGCAG 59.405 52.381 0.00 0.00 0.00 4.85
480 503 1.206132 TCTTTTATCGGAAGCTCGGCA 59.794 47.619 0.00 0.00 0.00 5.69
481 504 1.935933 TCTTTTATCGGAAGCTCGGC 58.064 50.000 0.00 0.00 0.00 5.54
482 505 3.522553 AGTTCTTTTATCGGAAGCTCGG 58.477 45.455 0.00 0.00 0.00 4.63
483 506 3.240861 CGAGTTCTTTTATCGGAAGCTCG 59.759 47.826 0.00 0.00 37.10 5.03
494 517 5.371115 CCAAGATTTGGCGAGTTCTTTTA 57.629 39.130 0.00 0.00 45.17 1.52
495 518 4.243007 CCAAGATTTGGCGAGTTCTTTT 57.757 40.909 0.00 0.00 45.17 2.27
532 555 2.365582 ACCAACACTATTGGAATCGCC 58.634 47.619 12.55 0.00 42.06 5.54
533 556 4.814234 TCATACCAACACTATTGGAATCGC 59.186 41.667 12.55 0.00 42.06 4.58
534 557 6.918892 TTCATACCAACACTATTGGAATCG 57.081 37.500 12.55 0.00 42.06 3.34
535 558 9.353999 GTTTTTCATACCAACACTATTGGAATC 57.646 33.333 12.55 0.00 42.06 2.52
536 559 8.311109 GGTTTTTCATACCAACACTATTGGAAT 58.689 33.333 12.55 0.00 42.06 3.01
537 560 7.287927 TGGTTTTTCATACCAACACTATTGGAA 59.712 33.333 12.55 0.00 42.50 3.53
538 561 6.778069 TGGTTTTTCATACCAACACTATTGGA 59.222 34.615 12.55 0.00 42.50 3.53
539 562 6.987386 TGGTTTTTCATACCAACACTATTGG 58.013 36.000 4.11 4.11 42.50 3.16
549 572 6.849085 ATATGTGCTTGGTTTTTCATACCA 57.151 33.333 0.00 0.00 43.71 3.25
588 611 8.475331 AGATTCGAGTATGTTAAATTGTTCGT 57.525 30.769 0.00 0.00 0.00 3.85
599 622 5.504337 GCACGACTAGAGATTCGAGTATGTT 60.504 44.000 7.40 0.00 38.63 2.71
615 638 3.446161 ACTATAGCCAAGTTGCACGACTA 59.554 43.478 0.00 0.00 0.00 2.59
655 678 5.894298 AGAATATCATAGAGGGCACACAA 57.106 39.130 0.00 0.00 0.00 3.33
662 685 4.260170 GCCAGCAAGAATATCATAGAGGG 58.740 47.826 0.00 0.00 0.00 4.30
696 719 9.811655 CGAATATAATACAAGTGCCAATAACAG 57.188 33.333 0.00 0.00 0.00 3.16
711 734 5.585500 TGCCGCTTGTTCGAATATAATAC 57.415 39.130 0.00 0.00 0.00 1.89
716 739 3.120199 GCATATGCCGCTTGTTCGAATAT 60.120 43.478 17.26 0.00 34.31 1.28
741 764 0.698818 AAAGGAGGGTGGGCTACAAG 59.301 55.000 2.66 0.00 0.00 3.16
743 766 1.154430 AAAAAGGAGGGTGGGCTACA 58.846 50.000 2.66 0.00 0.00 2.74
744 767 3.288092 CATAAAAAGGAGGGTGGGCTAC 58.712 50.000 0.00 0.00 0.00 3.58
745 768 2.357777 GCATAAAAAGGAGGGTGGGCTA 60.358 50.000 0.00 0.00 0.00 3.93
746 769 1.619704 GCATAAAAAGGAGGGTGGGCT 60.620 52.381 0.00 0.00 0.00 5.19
747 770 0.824109 GCATAAAAAGGAGGGTGGGC 59.176 55.000 0.00 0.00 0.00 5.36
748 771 1.102978 CGCATAAAAAGGAGGGTGGG 58.897 55.000 0.00 0.00 0.00 4.61
749 772 1.102978 CCGCATAAAAAGGAGGGTGG 58.897 55.000 0.00 0.00 0.00 4.61
750 773 1.834188 ACCGCATAAAAAGGAGGGTG 58.166 50.000 0.00 0.00 0.00 4.61
751 774 2.224917 TGAACCGCATAAAAAGGAGGGT 60.225 45.455 0.00 0.00 0.00 4.34
752 775 2.423538 CTGAACCGCATAAAAAGGAGGG 59.576 50.000 0.00 0.00 0.00 4.30
753 776 3.081804 ACTGAACCGCATAAAAAGGAGG 58.918 45.455 0.00 0.00 0.00 4.30
754 777 3.181520 CGACTGAACCGCATAAAAAGGAG 60.182 47.826 0.00 0.00 0.00 3.69
755 778 2.739913 CGACTGAACCGCATAAAAAGGA 59.260 45.455 0.00 0.00 0.00 3.36
756 779 2.159572 CCGACTGAACCGCATAAAAAGG 60.160 50.000 0.00 0.00 0.00 3.11
757 780 2.482721 ACCGACTGAACCGCATAAAAAG 59.517 45.455 0.00 0.00 0.00 2.27
758 781 2.481185 GACCGACTGAACCGCATAAAAA 59.519 45.455 0.00 0.00 0.00 1.94
759 782 2.070783 GACCGACTGAACCGCATAAAA 58.929 47.619 0.00 0.00 0.00 1.52
760 783 1.274167 AGACCGACTGAACCGCATAAA 59.726 47.619 0.00 0.00 0.00 1.40
761 784 0.892755 AGACCGACTGAACCGCATAA 59.107 50.000 0.00 0.00 0.00 1.90
762 785 0.454600 GAGACCGACTGAACCGCATA 59.545 55.000 0.00 0.00 0.00 3.14
763 786 1.215647 GAGACCGACTGAACCGCAT 59.784 57.895 0.00 0.00 0.00 4.73
764 787 2.649034 GAGACCGACTGAACCGCA 59.351 61.111 0.00 0.00 0.00 5.69
765 788 2.126031 GGAGACCGACTGAACCGC 60.126 66.667 0.00 0.00 0.00 5.68
766 789 0.458543 CATGGAGACCGACTGAACCG 60.459 60.000 0.00 0.00 0.00 4.44
767 790 0.895530 TCATGGAGACCGACTGAACC 59.104 55.000 0.00 0.00 0.00 3.62
768 791 1.819288 TCTCATGGAGACCGACTGAAC 59.181 52.381 0.00 0.00 33.35 3.18
769 792 2.215942 TCTCATGGAGACCGACTGAA 57.784 50.000 0.00 0.00 33.35 3.02
770 793 1.819288 GTTCTCATGGAGACCGACTGA 59.181 52.381 0.00 0.00 38.51 3.41
771 794 1.134965 GGTTCTCATGGAGACCGACTG 60.135 57.143 0.00 0.00 38.51 3.51
772 795 1.187087 GGTTCTCATGGAGACCGACT 58.813 55.000 0.00 0.00 38.51 4.18
773 796 0.175989 GGGTTCTCATGGAGACCGAC 59.824 60.000 0.00 0.00 38.51 4.79
774 797 0.252057 TGGGTTCTCATGGAGACCGA 60.252 55.000 0.00 0.00 38.51 4.69
775 798 0.833287 ATGGGTTCTCATGGAGACCG 59.167 55.000 0.00 0.00 38.51 4.79
776 799 1.141858 GGATGGGTTCTCATGGAGACC 59.858 57.143 0.00 0.00 38.51 3.85
777 800 1.839994 TGGATGGGTTCTCATGGAGAC 59.160 52.381 0.00 0.00 38.51 3.36
786 809 3.669939 CCTATTTGGTGGATGGGTTCT 57.330 47.619 0.00 0.00 0.00 3.01
819 844 5.185635 ACAATACTCATTGGTCCATTTGTGG 59.814 40.000 0.00 0.00 44.97 4.17
832 857 5.499004 ACCAGGTGTACACAATACTCATT 57.501 39.130 26.51 0.00 0.00 2.57
837 862 3.058501 GTGCAACCAGGTGTACACAATAC 60.059 47.826 26.51 9.89 35.36 1.89
881 906 4.653801 TCTTCTTGATCGATACCCCATCAA 59.346 41.667 0.00 0.00 35.66 2.57
900 926 6.545504 ACCATTGTACGCATCATATTCTTC 57.454 37.500 0.00 0.00 0.00 2.87
902 928 8.621532 ATTAACCATTGTACGCATCATATTCT 57.378 30.769 0.00 0.00 0.00 2.40
929 955 7.451566 TCCTGCATGAGAGTAGCATAAATAGTA 59.548 37.037 0.00 0.00 37.68 1.82
930 956 6.268617 TCCTGCATGAGAGTAGCATAAATAGT 59.731 38.462 0.00 0.00 37.68 2.12
931 957 6.695429 TCCTGCATGAGAGTAGCATAAATAG 58.305 40.000 0.00 0.00 37.68 1.73
935 966 3.244009 GCTCCTGCATGAGAGTAGCATAA 60.244 47.826 21.58 0.00 37.68 1.90
946 977 1.065199 CAGGGTTTAGCTCCTGCATGA 60.065 52.381 6.27 0.00 43.22 3.07
947 978 1.386533 CAGGGTTTAGCTCCTGCATG 58.613 55.000 6.27 0.00 43.22 4.06
948 979 3.890527 CAGGGTTTAGCTCCTGCAT 57.109 52.632 6.27 0.00 43.22 3.96
952 983 1.574263 GAGGACAGGGTTTAGCTCCT 58.426 55.000 0.00 0.00 33.84 3.69
953 984 0.175989 CGAGGACAGGGTTTAGCTCC 59.824 60.000 0.00 0.00 0.00 4.70
955 986 1.757699 GATCGAGGACAGGGTTTAGCT 59.242 52.381 0.00 0.00 0.00 3.32
956 987 1.202545 GGATCGAGGACAGGGTTTAGC 60.203 57.143 0.00 0.00 0.00 3.09
957 988 2.362717 GAGGATCGAGGACAGGGTTTAG 59.637 54.545 0.00 0.00 0.00 1.85
958 989 2.291996 TGAGGATCGAGGACAGGGTTTA 60.292 50.000 0.00 0.00 38.61 2.01
959 990 1.196012 GAGGATCGAGGACAGGGTTT 58.804 55.000 0.00 0.00 0.00 3.27
960 991 0.041238 TGAGGATCGAGGACAGGGTT 59.959 55.000 0.00 0.00 38.61 4.11
986 1017 2.093106 ACTACTCGTAGGCAGGAGTTG 58.907 52.381 14.28 14.28 45.33 3.16
1033 1064 1.080025 GTCTTCGTGTTCCCGGGAG 60.080 63.158 25.26 12.63 0.00 4.30
1034 1065 2.922950 CGTCTTCGTGTTCCCGGGA 61.923 63.158 22.63 22.63 0.00 5.14
1036 1067 2.431942 CCGTCTTCGTGTTCCCGG 60.432 66.667 0.00 0.00 35.01 5.73
1037 1068 3.110178 GCCGTCTTCGTGTTCCCG 61.110 66.667 0.00 0.00 35.01 5.14
1038 1069 3.110178 CGCCGTCTTCGTGTTCCC 61.110 66.667 0.00 0.00 35.01 3.97
1039 1070 3.774702 GCGCCGTCTTCGTGTTCC 61.775 66.667 0.00 0.00 35.01 3.62
1088 1130 2.939593 CCAGGAGGACACCAAGTTGGT 61.940 57.143 22.30 22.30 45.56 3.67
1089 1131 0.250901 CCAGGAGGACACCAAGTTGG 60.251 60.000 20.76 20.76 39.75 3.77
1090 1132 0.890996 GCCAGGAGGACACCAAGTTG 60.891 60.000 0.00 0.00 36.89 3.16
1155 1197 3.053896 GGCTGGTGTACCAACCGC 61.054 66.667 7.67 6.49 46.97 5.68
1261 1303 0.438830 GTGCTTTGATCCACGTCGTC 59.561 55.000 0.00 0.00 0.00 4.20
1346 1388 2.870372 GCATTCGTGTGGGCTGAC 59.130 61.111 0.00 0.00 0.00 3.51
1456 1498 2.507102 CTCGGCAGCGACACGAAT 60.507 61.111 0.00 0.00 36.08 3.34
1521 1563 0.176680 CGAGACCAGGATGTCCTTGG 59.823 60.000 12.92 12.92 46.09 3.61
1550 1593 4.252073 CTGATCCTGAACTTGTTGGAGAG 58.748 47.826 0.00 0.00 31.59 3.20
1723 1766 1.889105 CGCAGGGTCCCGAATCATG 60.889 63.158 0.99 0.00 0.00 3.07
1738 1781 0.740868 GCTTACTCACATGAGCCGCA 60.741 55.000 8.84 0.00 45.79 5.69
1744 1787 0.108186 CCGCCAGCTTACTCACATGA 60.108 55.000 0.00 0.00 0.00 3.07
1751 1794 1.215647 CGAACTCCGCCAGCTTACT 59.784 57.895 0.00 0.00 0.00 2.24
1791 1834 2.122989 TACCGGCATCCTCCTCCC 60.123 66.667 0.00 0.00 0.00 4.30
1807 1850 1.079681 GACAATGGCGTCCACCGTA 60.080 57.895 0.50 0.00 35.80 4.02
1822 1865 1.275010 TCAAACGAGCATAGCCTGACA 59.725 47.619 0.00 0.00 0.00 3.58
1894 1937 3.936203 TTGTTCTCCACCGCGCCT 61.936 61.111 0.00 0.00 0.00 5.52
1958 2001 4.778415 CCGTGTCGTCTCTGGCGG 62.778 72.222 0.00 0.00 0.00 6.13
1963 2006 0.727970 CGATCTTCCGTGTCGTCTCT 59.272 55.000 0.00 0.00 0.00 3.10
1996 2039 1.452108 GGAATCCCTGAACCTGGCG 60.452 63.158 0.00 0.00 0.00 5.69
2011 2054 1.686325 GCTAGACATGGAGGCCGGAA 61.686 60.000 5.05 0.00 0.00 4.30
2033 2076 4.101430 ACGTTTTTACTGTAACCTCCTGGA 59.899 41.667 0.00 0.00 37.04 3.86
2043 2086 6.414408 TTCCAAACGAACGTTTTTACTGTA 57.586 33.333 20.03 0.00 44.84 2.74
2054 2097 4.025229 TCAAGATGAGTTTCCAAACGAACG 60.025 41.667 0.00 0.00 43.51 3.95
2055 2098 5.418310 TCAAGATGAGTTTCCAAACGAAC 57.582 39.130 0.00 0.00 43.51 3.95
2057 2100 7.444183 ACTTATTCAAGATGAGTTTCCAAACGA 59.556 33.333 0.00 0.00 38.39 3.85
2060 2103 8.359642 CCAACTTATTCAAGATGAGTTTCCAAA 58.640 33.333 0.00 0.00 36.85 3.28
2085 2128 9.765795 AAAGTAACATGCAGATATACTACTTCC 57.234 33.333 0.00 0.00 0.00 3.46
2088 2131 9.915629 GCTAAAGTAACATGCAGATATACTACT 57.084 33.333 0.00 0.00 0.00 2.57
2089 2132 9.141400 GGCTAAAGTAACATGCAGATATACTAC 57.859 37.037 0.00 0.00 0.00 2.73
2095 3194 6.984474 GTGTAGGCTAAAGTAACATGCAGATA 59.016 38.462 0.00 0.00 0.00 1.98
2097 3196 5.175859 GTGTAGGCTAAAGTAACATGCAGA 58.824 41.667 0.00 0.00 0.00 4.26
2113 3213 1.403323 GGACGTACTGTAGGTGTAGGC 59.597 57.143 16.94 3.36 31.38 3.93
2117 3217 3.008375 TGAGTAGGACGTACTGTAGGTGT 59.992 47.826 11.61 7.43 42.48 4.16
2126 3226 3.439476 ACACTGTCATGAGTAGGACGTAC 59.561 47.826 0.00 0.00 40.35 3.67
2127 3227 3.682696 ACACTGTCATGAGTAGGACGTA 58.317 45.455 0.00 0.00 40.35 3.57
2128 3228 2.515854 ACACTGTCATGAGTAGGACGT 58.484 47.619 0.00 0.00 40.35 4.34
2129 3229 4.902443 ATACACTGTCATGAGTAGGACG 57.098 45.455 0.00 0.00 40.35 4.79
2140 3240 2.092968 GCTCCATGGGAATACACTGTCA 60.093 50.000 13.02 0.00 0.00 3.58
2148 3248 1.272490 GATCGACGCTCCATGGGAATA 59.728 52.381 13.02 0.00 0.00 1.75
2161 3261 0.525455 TCTCATTGTGGCGATCGACG 60.525 55.000 21.57 2.27 45.66 5.12
2163 3263 1.136891 ACATCTCATTGTGGCGATCGA 59.863 47.619 21.57 0.00 0.00 3.59
2164 3264 1.259770 CACATCTCATTGTGGCGATCG 59.740 52.381 11.69 11.69 42.63 3.69
2165 3265 1.003116 GCACATCTCATTGTGGCGATC 60.003 52.381 6.70 0.00 45.69 3.69
2166 3266 1.019673 GCACATCTCATTGTGGCGAT 58.980 50.000 6.70 0.00 45.69 4.58
2167 3267 1.360931 CGCACATCTCATTGTGGCGA 61.361 55.000 12.63 0.00 45.69 5.54
2215 3317 2.300437 CGATCCCCTCCCTTCTTCATAC 59.700 54.545 0.00 0.00 0.00 2.39
2303 3405 0.856982 GAGGGGAGGAGGATCAGAGA 59.143 60.000 0.00 0.00 36.25 3.10
2376 3478 1.456705 GCGAGGAGGATGAGGACCT 60.457 63.158 0.00 0.00 40.80 3.85
2476 3613 4.057432 CAACTTTTGGCATCAAACCGATT 58.943 39.130 0.00 0.00 41.97 3.34
2477 3614 3.554752 CCAACTTTTGGCATCAAACCGAT 60.555 43.478 0.00 0.00 45.17 4.18
2478 3615 2.223923 CCAACTTTTGGCATCAAACCGA 60.224 45.455 0.00 0.00 45.17 4.69
2479 3616 2.134346 CCAACTTTTGGCATCAAACCG 58.866 47.619 0.00 0.00 45.17 4.44
2523 3660 7.883217 AGCAATCAATCTCTAGCCAATATTTG 58.117 34.615 0.00 0.00 0.00 2.32
2524 3661 8.358148 CAAGCAATCAATCTCTAGCCAATATTT 58.642 33.333 0.00 0.00 0.00 1.40
2525 3662 7.523380 GCAAGCAATCAATCTCTAGCCAATATT 60.523 37.037 0.00 0.00 0.00 1.28
2526 3663 6.072064 GCAAGCAATCAATCTCTAGCCAATAT 60.072 38.462 0.00 0.00 0.00 1.28
2527 3664 5.240183 GCAAGCAATCAATCTCTAGCCAATA 59.760 40.000 0.00 0.00 0.00 1.90
2528 3665 4.037684 GCAAGCAATCAATCTCTAGCCAAT 59.962 41.667 0.00 0.00 0.00 3.16
2529 3666 3.379372 GCAAGCAATCAATCTCTAGCCAA 59.621 43.478 0.00 0.00 0.00 4.52
2530 3667 2.947652 GCAAGCAATCAATCTCTAGCCA 59.052 45.455 0.00 0.00 0.00 4.75
2531 3668 2.292845 GGCAAGCAATCAATCTCTAGCC 59.707 50.000 0.00 0.00 0.00 3.93
2532 3669 2.947652 TGGCAAGCAATCAATCTCTAGC 59.052 45.455 0.00 0.00 0.00 3.42
2533 3670 5.769484 ATTGGCAAGCAATCAATCTCTAG 57.231 39.130 5.96 0.00 0.00 2.43
2534 3671 5.889853 AGAATTGGCAAGCAATCAATCTCTA 59.110 36.000 5.96 0.00 31.56 2.43
2535 3672 4.710375 AGAATTGGCAAGCAATCAATCTCT 59.290 37.500 5.96 0.00 31.56 3.10
2536 3673 5.007385 AGAATTGGCAAGCAATCAATCTC 57.993 39.130 5.96 0.00 31.56 2.75
2537 3674 4.464951 TGAGAATTGGCAAGCAATCAATCT 59.535 37.500 5.96 0.00 31.56 2.40
2538 3675 4.565564 GTGAGAATTGGCAAGCAATCAATC 59.434 41.667 5.96 0.00 31.56 2.67
2539 3676 4.222145 AGTGAGAATTGGCAAGCAATCAAT 59.778 37.500 5.96 4.05 33.12 2.57
2540 3677 3.575256 AGTGAGAATTGGCAAGCAATCAA 59.425 39.130 5.96 0.00 0.00 2.57
2541 3678 3.057104 CAGTGAGAATTGGCAAGCAATCA 60.057 43.478 5.96 4.69 0.00 2.57
2542 3679 3.508762 CAGTGAGAATTGGCAAGCAATC 58.491 45.455 5.96 2.00 0.00 2.67
2543 3680 2.353406 GCAGTGAGAATTGGCAAGCAAT 60.353 45.455 5.96 0.00 0.00 3.56
2544 3681 1.000060 GCAGTGAGAATTGGCAAGCAA 60.000 47.619 5.96 0.00 0.00 3.91
2545 3682 0.599558 GCAGTGAGAATTGGCAAGCA 59.400 50.000 5.96 0.00 0.00 3.91
2546 3683 0.108945 GGCAGTGAGAATTGGCAAGC 60.109 55.000 5.96 0.32 39.44 4.01
2547 3684 1.250328 TGGCAGTGAGAATTGGCAAG 58.750 50.000 5.96 0.00 45.36 4.01
2548 3685 3.435846 TGGCAGTGAGAATTGGCAA 57.564 47.368 0.68 0.68 45.36 4.52
2549 3686 1.820519 GATTGGCAGTGAGAATTGGCA 59.179 47.619 0.00 0.00 46.46 4.92
2550 3687 2.097825 AGATTGGCAGTGAGAATTGGC 58.902 47.619 0.00 0.00 40.02 4.52
2551 3688 3.128242 GTGAGATTGGCAGTGAGAATTGG 59.872 47.826 0.00 0.00 0.00 3.16
2552 3689 3.754850 TGTGAGATTGGCAGTGAGAATTG 59.245 43.478 0.00 0.00 0.00 2.32
2553 3690 4.025040 TGTGAGATTGGCAGTGAGAATT 57.975 40.909 0.00 0.00 0.00 2.17
2554 3691 3.708403 TGTGAGATTGGCAGTGAGAAT 57.292 42.857 0.00 0.00 0.00 2.40
2555 3692 3.490439 TTGTGAGATTGGCAGTGAGAA 57.510 42.857 0.00 0.00 0.00 2.87
2556 3693 3.490439 TTTGTGAGATTGGCAGTGAGA 57.510 42.857 0.00 0.00 0.00 3.27
2557 3694 4.037208 ACTTTTTGTGAGATTGGCAGTGAG 59.963 41.667 0.00 0.00 0.00 3.51
2558 3695 3.953612 ACTTTTTGTGAGATTGGCAGTGA 59.046 39.130 0.00 0.00 0.00 3.41
2559 3696 4.311816 ACTTTTTGTGAGATTGGCAGTG 57.688 40.909 0.00 0.00 0.00 3.66
2560 3697 4.160252 ACAACTTTTTGTGAGATTGGCAGT 59.840 37.500 0.00 0.00 44.66 4.40
2561 3698 4.685924 ACAACTTTTTGTGAGATTGGCAG 58.314 39.130 0.00 0.00 44.66 4.85
2562 3699 4.159321 TGACAACTTTTTGTGAGATTGGCA 59.841 37.500 0.00 0.00 46.43 4.92
2563 3700 4.681744 TGACAACTTTTTGTGAGATTGGC 58.318 39.130 0.00 0.00 46.43 4.52
2564 3701 7.278424 ACATTTGACAACTTTTTGTGAGATTGG 59.722 33.333 0.00 0.00 46.43 3.16
2565 3702 8.188531 ACATTTGACAACTTTTTGTGAGATTG 57.811 30.769 0.00 0.00 46.43 2.67
2566 3703 8.658609 CAACATTTGACAACTTTTTGTGAGATT 58.341 29.630 0.00 0.00 46.43 2.40
2567 3704 7.278424 CCAACATTTGACAACTTTTTGTGAGAT 59.722 33.333 0.00 0.00 46.43 2.75
2568 3705 6.589523 CCAACATTTGACAACTTTTTGTGAGA 59.410 34.615 0.00 0.00 46.43 3.27
2569 3706 6.672836 GCCAACATTTGACAACTTTTTGTGAG 60.673 38.462 0.00 0.00 46.43 3.51
2570 3707 5.121454 GCCAACATTTGACAACTTTTTGTGA 59.879 36.000 0.00 0.00 46.43 3.58
2571 3708 5.106791 TGCCAACATTTGACAACTTTTTGTG 60.107 36.000 0.00 0.00 46.43 3.33
2572 3709 6.567511 GTTGCCAACATTTGACAACTTTTTGT 60.568 34.615 1.91 0.00 46.34 2.83
2573 3710 5.542616 TGCCAACATTTGACAACTTTTTG 57.457 34.783 0.00 0.00 38.83 2.44
2574 3711 5.937187 GTTGCCAACATTTGACAACTTTTT 58.063 33.333 1.91 0.00 46.34 1.94
2575 3712 5.544136 GTTGCCAACATTTGACAACTTTT 57.456 34.783 1.91 0.00 46.34 2.27
2584 3721 6.020520 GCAAAATCAAAAGTTGCCAACATTTG 60.021 34.615 24.74 24.74 46.04 2.32
2585 3722 6.035217 GCAAAATCAAAAGTTGCCAACATTT 58.965 32.000 10.69 7.67 41.41 2.32
2586 3723 5.580661 GCAAAATCAAAAGTTGCCAACATT 58.419 33.333 10.69 0.60 41.41 2.71
2587 3724 5.172460 GCAAAATCAAAAGTTGCCAACAT 57.828 34.783 10.69 0.00 41.41 2.71
2588 3725 4.612932 GCAAAATCAAAAGTTGCCAACA 57.387 36.364 10.69 0.00 41.41 3.33
2593 3730 4.024977 ACATTCGGCAAAATCAAAAGTTGC 60.025 37.500 0.00 0.00 45.48 4.17
2594 3731 5.655893 ACATTCGGCAAAATCAAAAGTTG 57.344 34.783 0.00 0.00 0.00 3.16
2595 3732 5.007528 CCAACATTCGGCAAAATCAAAAGTT 59.992 36.000 0.00 0.00 0.00 2.66
2596 3733 4.511082 CCAACATTCGGCAAAATCAAAAGT 59.489 37.500 0.00 0.00 0.00 2.66
2597 3734 5.021120 CCAACATTCGGCAAAATCAAAAG 57.979 39.130 0.00 0.00 0.00 2.27
2609 3746 3.364442 TGGCAAGCCAACATTCGG 58.636 55.556 12.11 0.00 44.12 4.30
2633 3770 4.981806 TGAGCATAATTGGTTTGCTACC 57.018 40.909 6.90 2.04 46.21 3.18
2634 3771 7.264373 ACTATGAGCATAATTGGTTTGCTAC 57.736 36.000 6.90 3.62 46.21 3.58
2635 3772 7.880160 AACTATGAGCATAATTGGTTTGCTA 57.120 32.000 6.90 0.00 46.21 3.49
2637 3774 7.832503 AAAACTATGAGCATAATTGGTTTGC 57.167 32.000 6.43 0.00 32.62 3.68
2639 3776 9.567848 CGTAAAAACTATGAGCATAATTGGTTT 57.432 29.630 0.00 0.00 32.62 3.27
2640 3777 8.188139 CCGTAAAAACTATGAGCATAATTGGTT 58.812 33.333 0.00 0.00 32.62 3.67
2641 3778 7.681065 GCCGTAAAAACTATGAGCATAATTGGT 60.681 37.037 0.00 0.00 35.95 3.67
2642 3779 6.636850 GCCGTAAAAACTATGAGCATAATTGG 59.363 38.462 0.00 0.00 0.00 3.16
2643 3780 6.356977 CGCCGTAAAAACTATGAGCATAATTG 59.643 38.462 0.00 0.00 0.00 2.32
2644 3781 6.427150 CGCCGTAAAAACTATGAGCATAATT 58.573 36.000 0.00 0.00 0.00 1.40
2645 3782 5.049680 CCGCCGTAAAAACTATGAGCATAAT 60.050 40.000 0.00 0.00 0.00 1.28
2646 3783 4.271533 CCGCCGTAAAAACTATGAGCATAA 59.728 41.667 0.00 0.00 0.00 1.90
2647 3784 3.805422 CCGCCGTAAAAACTATGAGCATA 59.195 43.478 0.00 0.00 0.00 3.14
2648 3785 2.612212 CCGCCGTAAAAACTATGAGCAT 59.388 45.455 0.00 0.00 0.00 3.79
2649 3786 2.004017 CCGCCGTAAAAACTATGAGCA 58.996 47.619 0.00 0.00 0.00 4.26
2650 3787 2.273557 TCCGCCGTAAAAACTATGAGC 58.726 47.619 0.00 0.00 0.00 4.26
2651 3788 3.777478 TCTCCGCCGTAAAAACTATGAG 58.223 45.455 0.00 0.00 0.00 2.90
2652 3789 3.872511 TCTCCGCCGTAAAAACTATGA 57.127 42.857 0.00 0.00 0.00 2.15
2653 3790 3.247648 CCATCTCCGCCGTAAAAACTATG 59.752 47.826 0.00 0.00 0.00 2.23
2654 3791 3.463944 CCATCTCCGCCGTAAAAACTAT 58.536 45.455 0.00 0.00 0.00 2.12
2655 3792 2.419021 CCCATCTCCGCCGTAAAAACTA 60.419 50.000 0.00 0.00 0.00 2.24
2656 3793 1.677820 CCCATCTCCGCCGTAAAAACT 60.678 52.381 0.00 0.00 0.00 2.66
2660 3797 2.188469 GCCCATCTCCGCCGTAAA 59.812 61.111 0.00 0.00 0.00 2.01
2686 3823 4.815108 GGAAAATCCGGGGCCGCT 62.815 66.667 18.79 0.00 38.24 5.52
2749 3887 4.778143 GCACCGAGCCCCACGAAT 62.778 66.667 0.00 0.00 37.23 3.34
2868 4007 5.474876 AGAACACCATCTTAGAGCAAAAAGG 59.525 40.000 0.00 0.00 0.00 3.11
2916 4055 0.953471 CGGAACTCGTCAATGGCCAA 60.953 55.000 10.96 0.00 0.00 4.52
2986 4125 0.969894 GACCGAATCCCATCCGATCT 59.030 55.000 0.00 0.00 0.00 2.75
3025 4164 1.352083 CCCTCCTGAAACCACTCAGA 58.648 55.000 2.18 0.00 44.82 3.27
3034 4173 0.105964 CGTGTCACACCCTCCTGAAA 59.894 55.000 1.24 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.