Multiple sequence alignment - TraesCS3D01G024300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G024300 chr3D 100.000 3674 0 0 1 3674 8145622 8149295 0.000000e+00 6785.0
1 TraesCS3D01G024300 chr3D 90.389 1852 142 19 1160 3001 7997951 7999776 0.000000e+00 2401.0
2 TraesCS3D01G024300 chr3D 93.296 1417 51 14 2281 3674 8068441 8069836 0.000000e+00 2050.0
3 TraesCS3D01G024300 chr3D 95.985 523 19 1 229 749 455693231 455693753 0.000000e+00 848.0
4 TraesCS3D01G024300 chr3D 90.047 211 17 1 806 1016 7977893 7978099 1.680000e-68 270.0
5 TraesCS3D01G024300 chr3D 97.015 67 2 0 3607 3673 8069843 8069909 3.000000e-21 113.0
6 TraesCS3D01G024300 chr3D 92.647 68 4 1 1029 1096 7997867 7997933 3.020000e-16 97.1
7 TraesCS3D01G024300 chr3D 98.077 52 1 0 3623 3674 8159261 8159312 1.410000e-14 91.6
8 TraesCS3D01G024300 chr3A 92.469 2191 117 24 806 2983 12731425 12729270 0.000000e+00 3088.0
9 TraesCS3D01G024300 chr3B 92.924 2134 128 10 848 2970 10046443 10048564 0.000000e+00 3083.0
10 TraesCS3D01G024300 chr3B 93.810 517 32 0 229 745 739067627 739067111 0.000000e+00 778.0
11 TraesCS3D01G024300 chr2D 95.354 495 23 0 229 723 87657057 87656563 0.000000e+00 787.0
12 TraesCS3D01G024300 chr1D 95.668 277 12 0 432 708 28965693 28965969 2.600000e-121 446.0
13 TraesCS3D01G024300 chr1D 95.614 228 10 0 1 228 450074302 450074529 2.080000e-97 366.0
14 TraesCS3D01G024300 chr1D 95.197 229 11 0 1 229 64894389 64894617 2.700000e-96 363.0
15 TraesCS3D01G024300 chr1D 95.146 206 10 0 229 434 28965365 28965570 3.540000e-85 326.0
16 TraesCS3D01G024300 chr1A 96.930 228 7 0 1 228 299659838 299660065 2.070000e-102 383.0
17 TraesCS3D01G024300 chr1A 96.053 228 9 0 1 228 306647338 306647111 4.480000e-99 372.0
18 TraesCS3D01G024300 chr1A 95.614 228 10 0 1 228 50945983 50945756 2.080000e-97 366.0
19 TraesCS3D01G024300 chr5A 96.903 226 7 0 3 228 429481096 429481321 2.680000e-101 379.0
20 TraesCS3D01G024300 chr6D 96.053 228 9 0 1 228 17954885 17954658 4.480000e-99 372.0
21 TraesCS3D01G024300 chr6D 95.614 228 10 0 1 228 262292949 262292722 2.080000e-97 366.0
22 TraesCS3D01G024300 chr5D 95.614 228 10 0 1 228 543791565 543791338 2.080000e-97 366.0
23 TraesCS3D01G024300 chr7A 92.032 251 20 0 229 479 36513044 36513294 1.620000e-93 353.0
24 TraesCS3D01G024300 chr2B 74.281 661 139 20 1414 2064 176273180 176272541 2.190000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G024300 chr3D 8145622 8149295 3673 False 6785.00 6785 100.0000 1 3674 1 chr3D.!!$F2 3673
1 TraesCS3D01G024300 chr3D 7997867 7999776 1909 False 1249.05 2401 91.5180 1029 3001 2 chr3D.!!$F5 1972
2 TraesCS3D01G024300 chr3D 8068441 8069909 1468 False 1081.50 2050 95.1555 2281 3674 2 chr3D.!!$F6 1393
3 TraesCS3D01G024300 chr3D 455693231 455693753 522 False 848.00 848 95.9850 229 749 1 chr3D.!!$F4 520
4 TraesCS3D01G024300 chr3A 12729270 12731425 2155 True 3088.00 3088 92.4690 806 2983 1 chr3A.!!$R1 2177
5 TraesCS3D01G024300 chr3B 10046443 10048564 2121 False 3083.00 3083 92.9240 848 2970 1 chr3B.!!$F1 2122
6 TraesCS3D01G024300 chr3B 739067111 739067627 516 True 778.00 778 93.8100 229 745 1 chr3B.!!$R1 516
7 TraesCS3D01G024300 chr1D 28965365 28965969 604 False 386.00 446 95.4070 229 708 2 chr1D.!!$F3 479
8 TraesCS3D01G024300 chr2B 176272541 176273180 639 True 250.00 250 74.2810 1414 2064 1 chr2B.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.039035 TGCGTGGGCCTTTAGGATTT 59.961 50.0 4.53 0.0 38.85 2.17 F
751 879 0.165079 ATGCAAAAACTCGTACCGCG 59.835 50.0 0.00 0.0 43.01 6.46 F
1009 1143 0.034574 ATGCCTTTACATGCCCACGA 60.035 50.0 0.00 0.0 0.00 4.35 F
1552 1689 0.749649 ATGCTTGGAGCTCGTAGGAG 59.250 55.0 7.83 8.1 42.97 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1009 1143 0.322816 AGCATGCCGGTCTGAATTGT 60.323 50.000 15.66 0.0 0.0 2.71 R
1693 1831 2.122768 CCAAGATAGGGCAGGAGAAGT 58.877 52.381 0.00 0.0 0.0 3.01 R
2604 2777 3.381908 CAGCACTATCCTCGGTCTTACTT 59.618 47.826 0.00 0.0 0.0 2.24 R
3242 3442 0.738975 CGTCTCGACAGATTGCCCTA 59.261 55.000 0.00 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.507102 CGCGCGTGGATGTCTCTT 60.507 61.111 24.19 0.00 0.00 2.85
33 34 2.094659 CGCGCGTGGATGTCTCTTT 61.095 57.895 24.19 0.00 0.00 2.52
34 35 1.626654 CGCGCGTGGATGTCTCTTTT 61.627 55.000 24.19 0.00 0.00 2.27
35 36 0.179215 GCGCGTGGATGTCTCTTTTG 60.179 55.000 8.43 0.00 0.00 2.44
36 37 1.148310 CGCGTGGATGTCTCTTTTGT 58.852 50.000 0.00 0.00 0.00 2.83
37 38 1.531149 CGCGTGGATGTCTCTTTTGTT 59.469 47.619 0.00 0.00 0.00 2.83
38 39 2.411547 CGCGTGGATGTCTCTTTTGTTC 60.412 50.000 0.00 0.00 0.00 3.18
39 40 2.808543 GCGTGGATGTCTCTTTTGTTCT 59.191 45.455 0.00 0.00 0.00 3.01
40 41 3.120511 GCGTGGATGTCTCTTTTGTTCTC 60.121 47.826 0.00 0.00 0.00 2.87
41 42 4.058124 CGTGGATGTCTCTTTTGTTCTCA 58.942 43.478 0.00 0.00 0.00 3.27
42 43 4.692625 CGTGGATGTCTCTTTTGTTCTCAT 59.307 41.667 0.00 0.00 0.00 2.90
43 44 5.163913 CGTGGATGTCTCTTTTGTTCTCATC 60.164 44.000 0.00 0.00 0.00 2.92
44 45 5.123027 GTGGATGTCTCTTTTGTTCTCATCC 59.877 44.000 12.52 12.52 45.53 3.51
45 46 5.013495 TGGATGTCTCTTTTGTTCTCATCCT 59.987 40.000 17.92 0.00 45.53 3.24
46 47 5.584251 GGATGTCTCTTTTGTTCTCATCCTC 59.416 44.000 12.24 0.00 43.43 3.71
47 48 5.551305 TGTCTCTTTTGTTCTCATCCTCA 57.449 39.130 0.00 0.00 0.00 3.86
48 49 6.119240 TGTCTCTTTTGTTCTCATCCTCAT 57.881 37.500 0.00 0.00 0.00 2.90
49 50 7.244886 TGTCTCTTTTGTTCTCATCCTCATA 57.755 36.000 0.00 0.00 0.00 2.15
50 51 7.099764 TGTCTCTTTTGTTCTCATCCTCATAC 58.900 38.462 0.00 0.00 0.00 2.39
51 52 7.099764 GTCTCTTTTGTTCTCATCCTCATACA 58.900 38.462 0.00 0.00 0.00 2.29
52 53 7.768120 GTCTCTTTTGTTCTCATCCTCATACAT 59.232 37.037 0.00 0.00 0.00 2.29
53 54 7.767659 TCTCTTTTGTTCTCATCCTCATACATG 59.232 37.037 0.00 0.00 0.00 3.21
54 55 7.397221 TCTTTTGTTCTCATCCTCATACATGT 58.603 34.615 2.69 2.69 0.00 3.21
55 56 6.990341 TTTGTTCTCATCCTCATACATGTG 57.010 37.500 9.11 0.00 0.00 3.21
56 57 5.027293 TGTTCTCATCCTCATACATGTGG 57.973 43.478 9.11 0.37 41.54 4.17
64 65 5.604758 TCCTCATACATGTGGAGAAAGAG 57.395 43.478 23.39 9.89 43.33 2.85
65 66 4.125703 CCTCATACATGTGGAGAAAGAGC 58.874 47.826 23.39 0.00 42.50 4.09
66 67 4.125703 CTCATACATGTGGAGAAAGAGCC 58.874 47.826 19.20 0.00 0.00 4.70
67 68 3.776969 TCATACATGTGGAGAAAGAGCCT 59.223 43.478 9.11 0.00 0.00 4.58
68 69 2.777832 ACATGTGGAGAAAGAGCCTC 57.222 50.000 0.00 0.00 0.00 4.70
77 78 5.632034 GGAGAAAGAGCCTCCCTTATAAA 57.368 43.478 0.00 0.00 43.37 1.40
78 79 5.616270 GGAGAAAGAGCCTCCCTTATAAAG 58.384 45.833 0.00 0.00 43.37 1.85
79 80 5.367060 GGAGAAAGAGCCTCCCTTATAAAGA 59.633 44.000 0.00 0.00 43.37 2.52
80 81 6.463755 GGAGAAAGAGCCTCCCTTATAAAGAG 60.464 46.154 0.00 5.54 43.37 2.85
85 86 2.418669 CCTCCCTTATAAAGAGGCCCA 58.581 52.381 15.04 0.00 40.75 5.36
86 87 2.783510 CCTCCCTTATAAAGAGGCCCAA 59.216 50.000 15.04 0.00 40.75 4.12
87 88 3.435169 CCTCCCTTATAAAGAGGCCCAAC 60.435 52.174 15.04 0.00 40.75 3.77
88 89 3.459969 CTCCCTTATAAAGAGGCCCAACT 59.540 47.826 0.00 0.00 32.74 3.16
89 90 3.458487 TCCCTTATAAAGAGGCCCAACTC 59.542 47.826 0.00 0.00 37.77 3.01
90 91 3.435169 CCCTTATAAAGAGGCCCAACTCC 60.435 52.174 0.00 0.00 38.26 3.85
91 92 3.435169 CCTTATAAAGAGGCCCAACTCCC 60.435 52.174 0.00 0.00 38.26 4.30
92 93 1.987080 ATAAAGAGGCCCAACTCCCT 58.013 50.000 0.00 0.00 38.26 4.20
93 94 1.286248 TAAAGAGGCCCAACTCCCTC 58.714 55.000 0.00 0.00 46.39 4.30
95 96 4.809513 GAGGCCCAACTCCCTCTA 57.190 61.111 0.00 0.00 43.42 2.43
96 97 3.007581 GAGGCCCAACTCCCTCTAA 57.992 57.895 0.00 0.00 43.42 2.10
97 98 1.286248 GAGGCCCAACTCCCTCTAAA 58.714 55.000 0.00 0.00 43.42 1.85
98 99 0.992695 AGGCCCAACTCCCTCTAAAC 59.007 55.000 0.00 0.00 0.00 2.01
99 100 0.992695 GGCCCAACTCCCTCTAAACT 59.007 55.000 0.00 0.00 0.00 2.66
100 101 2.193993 GGCCCAACTCCCTCTAAACTA 58.806 52.381 0.00 0.00 0.00 2.24
101 102 2.170817 GGCCCAACTCCCTCTAAACTAG 59.829 54.545 0.00 0.00 0.00 2.57
102 103 2.420269 GCCCAACTCCCTCTAAACTAGC 60.420 54.545 0.00 0.00 0.00 3.42
103 104 2.838202 CCCAACTCCCTCTAAACTAGCA 59.162 50.000 0.00 0.00 0.00 3.49
104 105 3.263425 CCCAACTCCCTCTAAACTAGCAA 59.737 47.826 0.00 0.00 0.00 3.91
105 106 4.080299 CCCAACTCCCTCTAAACTAGCAAT 60.080 45.833 0.00 0.00 0.00 3.56
106 107 4.878397 CCAACTCCCTCTAAACTAGCAATG 59.122 45.833 0.00 0.00 0.00 2.82
107 108 5.491982 CAACTCCCTCTAAACTAGCAATGT 58.508 41.667 0.00 0.00 0.00 2.71
108 109 5.091261 ACTCCCTCTAAACTAGCAATGTG 57.909 43.478 0.00 0.00 0.00 3.21
109 110 4.080863 ACTCCCTCTAAACTAGCAATGTGG 60.081 45.833 0.00 0.00 0.00 4.17
110 111 3.199946 TCCCTCTAAACTAGCAATGTGGG 59.800 47.826 0.00 0.00 0.00 4.61
111 112 3.199946 CCCTCTAAACTAGCAATGTGGGA 59.800 47.826 7.39 0.00 33.14 4.37
112 113 4.192317 CCTCTAAACTAGCAATGTGGGAC 58.808 47.826 0.00 0.00 0.00 4.46
113 114 4.080863 CCTCTAAACTAGCAATGTGGGACT 60.081 45.833 0.00 0.00 0.00 3.85
114 115 5.128827 CCTCTAAACTAGCAATGTGGGACTA 59.871 44.000 0.00 0.00 0.00 2.59
115 116 6.351881 CCTCTAAACTAGCAATGTGGGACTAA 60.352 42.308 0.00 0.00 0.00 2.24
116 117 7.011499 TCTAAACTAGCAATGTGGGACTAAA 57.989 36.000 0.00 0.00 0.00 1.85
117 118 7.630082 TCTAAACTAGCAATGTGGGACTAAAT 58.370 34.615 0.00 0.00 0.00 1.40
118 119 8.107095 TCTAAACTAGCAATGTGGGACTAAATT 58.893 33.333 0.00 0.00 0.00 1.82
119 120 7.539034 AAACTAGCAATGTGGGACTAAATTT 57.461 32.000 0.00 0.00 0.00 1.82
120 121 7.539034 AACTAGCAATGTGGGACTAAATTTT 57.461 32.000 0.00 0.00 0.00 1.82
121 122 8.644374 AACTAGCAATGTGGGACTAAATTTTA 57.356 30.769 0.00 0.00 0.00 1.52
122 123 8.281212 ACTAGCAATGTGGGACTAAATTTTAG 57.719 34.615 13.44 13.44 0.00 1.85
123 124 7.888546 ACTAGCAATGTGGGACTAAATTTTAGT 59.111 33.333 19.25 19.25 0.00 2.24
124 125 7.539034 AGCAATGTGGGACTAAATTTTAGTT 57.461 32.000 19.95 7.01 0.00 2.24
125 126 7.602753 AGCAATGTGGGACTAAATTTTAGTTC 58.397 34.615 19.95 18.12 0.00 3.01
126 127 7.451566 AGCAATGTGGGACTAAATTTTAGTTCT 59.548 33.333 21.50 4.89 0.00 3.01
127 128 8.736244 GCAATGTGGGACTAAATTTTAGTTCTA 58.264 33.333 21.50 15.72 0.00 2.10
131 132 9.498176 TGTGGGACTAAATTTTAGTTCTACTTC 57.502 33.333 29.39 14.75 36.05 3.01
132 133 9.722184 GTGGGACTAAATTTTAGTTCTACTTCT 57.278 33.333 25.54 4.14 33.37 2.85
140 141 9.952188 AAATTTTAGTTCTACTTCTTGTCTTGC 57.048 29.630 0.00 0.00 0.00 4.01
141 142 8.677148 ATTTTAGTTCTACTTCTTGTCTTGCA 57.323 30.769 0.00 0.00 0.00 4.08
142 143 8.677148 TTTTAGTTCTACTTCTTGTCTTGCAT 57.323 30.769 0.00 0.00 0.00 3.96
143 144 7.658179 TTAGTTCTACTTCTTGTCTTGCATG 57.342 36.000 0.00 0.00 0.00 4.06
144 145 5.858381 AGTTCTACTTCTTGTCTTGCATGA 58.142 37.500 0.00 0.00 0.00 3.07
145 146 6.291377 AGTTCTACTTCTTGTCTTGCATGAA 58.709 36.000 3.51 0.00 38.44 2.57
146 147 6.939163 AGTTCTACTTCTTGTCTTGCATGAAT 59.061 34.615 3.51 0.00 39.50 2.57
147 148 6.732531 TCTACTTCTTGTCTTGCATGAATG 57.267 37.500 3.51 0.00 39.50 2.67
148 149 4.778534 ACTTCTTGTCTTGCATGAATGG 57.221 40.909 3.51 0.00 39.50 3.16
149 150 3.508793 ACTTCTTGTCTTGCATGAATGGG 59.491 43.478 3.51 0.00 39.50 4.00
150 151 1.820519 TCTTGTCTTGCATGAATGGGC 59.179 47.619 3.51 0.00 0.00 5.36
151 152 1.822990 CTTGTCTTGCATGAATGGGCT 59.177 47.619 3.51 0.00 0.00 5.19
152 153 1.179152 TGTCTTGCATGAATGGGCTG 58.821 50.000 3.51 0.00 0.00 4.85
153 154 0.179119 GTCTTGCATGAATGGGCTGC 60.179 55.000 3.51 0.00 36.45 5.25
154 155 1.226859 CTTGCATGAATGGGCTGCG 60.227 57.895 0.00 0.00 38.75 5.18
155 156 1.940883 CTTGCATGAATGGGCTGCGT 61.941 55.000 0.00 0.00 38.75 5.24
156 157 2.103538 GCATGAATGGGCTGCGTG 59.896 61.111 0.00 0.00 0.00 5.34
157 158 2.802792 CATGAATGGGCTGCGTGG 59.197 61.111 0.00 0.00 0.00 4.94
158 159 2.440796 ATGAATGGGCTGCGTGGG 60.441 61.111 0.00 0.00 0.00 4.61
165 166 3.134127 GGCTGCGTGGGCCTTTAG 61.134 66.667 4.53 0.00 45.57 1.85
166 167 3.134127 GCTGCGTGGGCCTTTAGG 61.134 66.667 4.53 0.00 38.85 2.69
167 168 2.668632 CTGCGTGGGCCTTTAGGA 59.331 61.111 4.53 0.00 38.85 2.94
168 169 1.224592 CTGCGTGGGCCTTTAGGAT 59.775 57.895 4.53 0.00 38.85 3.24
169 170 0.394352 CTGCGTGGGCCTTTAGGATT 60.394 55.000 4.53 0.00 38.85 3.01
170 171 0.039035 TGCGTGGGCCTTTAGGATTT 59.961 50.000 4.53 0.00 38.85 2.17
171 172 1.282447 TGCGTGGGCCTTTAGGATTTA 59.718 47.619 4.53 0.00 38.85 1.40
172 173 2.092103 TGCGTGGGCCTTTAGGATTTAT 60.092 45.455 4.53 0.00 38.85 1.40
173 174 2.956333 GCGTGGGCCTTTAGGATTTATT 59.044 45.455 4.53 0.00 37.39 1.40
174 175 4.139038 GCGTGGGCCTTTAGGATTTATTA 58.861 43.478 4.53 0.00 37.39 0.98
175 176 4.215613 GCGTGGGCCTTTAGGATTTATTAG 59.784 45.833 4.53 0.00 37.39 1.73
176 177 4.760204 CGTGGGCCTTTAGGATTTATTAGG 59.240 45.833 4.53 0.00 37.39 2.69
177 178 5.455612 CGTGGGCCTTTAGGATTTATTAGGA 60.456 44.000 4.53 0.00 37.39 2.94
178 179 6.370453 GTGGGCCTTTAGGATTTATTAGGAA 58.630 40.000 4.53 0.00 37.39 3.36
179 180 7.010771 GTGGGCCTTTAGGATTTATTAGGAAT 58.989 38.462 4.53 0.00 37.39 3.01
180 181 7.509318 GTGGGCCTTTAGGATTTATTAGGAATT 59.491 37.037 4.53 0.00 37.39 2.17
181 182 8.071229 TGGGCCTTTAGGATTTATTAGGAATTT 58.929 33.333 4.53 0.00 37.39 1.82
182 183 8.585881 GGGCCTTTAGGATTTATTAGGAATTTC 58.414 37.037 0.84 0.00 37.39 2.17
183 184 9.368416 GGCCTTTAGGATTTATTAGGAATTTCT 57.632 33.333 0.00 0.00 37.39 2.52
191 192 9.521503 GGATTTATTAGGAATTTCTGAAACTGC 57.478 33.333 4.73 0.00 0.00 4.40
197 198 6.521151 AGGAATTTCTGAAACTGCTATTGG 57.479 37.500 3.77 0.00 0.00 3.16
198 199 5.420104 AGGAATTTCTGAAACTGCTATTGGG 59.580 40.000 3.77 0.00 0.00 4.12
199 200 4.725790 ATTTCTGAAACTGCTATTGGGC 57.274 40.909 4.73 0.00 0.00 5.36
200 201 3.439857 TTCTGAAACTGCTATTGGGCT 57.560 42.857 0.00 0.00 0.00 5.19
201 202 4.568072 TTCTGAAACTGCTATTGGGCTA 57.432 40.909 0.00 0.00 0.00 3.93
202 203 4.142609 TCTGAAACTGCTATTGGGCTAG 57.857 45.455 0.00 0.00 0.00 3.42
203 204 3.118261 TCTGAAACTGCTATTGGGCTAGG 60.118 47.826 0.00 0.00 0.00 3.02
204 205 1.950216 GAAACTGCTATTGGGCTAGGC 59.050 52.381 8.00 8.00 0.00 3.93
216 217 2.729028 GGCTAGGCCCAAAATAGACA 57.271 50.000 4.61 0.00 44.06 3.41
217 218 3.012934 GGCTAGGCCCAAAATAGACAA 57.987 47.619 4.61 0.00 44.06 3.18
218 219 3.361786 GGCTAGGCCCAAAATAGACAAA 58.638 45.455 4.61 0.00 44.06 2.83
219 220 3.767131 GGCTAGGCCCAAAATAGACAAAA 59.233 43.478 4.61 0.00 44.06 2.44
220 221 4.405680 GGCTAGGCCCAAAATAGACAAAAT 59.594 41.667 4.61 0.00 44.06 1.82
221 222 5.104941 GGCTAGGCCCAAAATAGACAAAATT 60.105 40.000 4.61 0.00 44.06 1.82
222 223 6.042777 GCTAGGCCCAAAATAGACAAAATTC 58.957 40.000 0.00 0.00 0.00 2.17
223 224 5.420725 AGGCCCAAAATAGACAAAATTCC 57.579 39.130 0.00 0.00 0.00 3.01
224 225 4.843516 AGGCCCAAAATAGACAAAATTCCA 59.156 37.500 0.00 0.00 0.00 3.53
225 226 5.046376 AGGCCCAAAATAGACAAAATTCCAG 60.046 40.000 0.00 0.00 0.00 3.86
226 227 4.631377 GCCCAAAATAGACAAAATTCCAGC 59.369 41.667 0.00 0.00 0.00 4.85
227 228 5.792741 CCCAAAATAGACAAAATTCCAGCA 58.207 37.500 0.00 0.00 0.00 4.41
261 262 1.254954 GGAGGTCTTGTACAGGTCGT 58.745 55.000 4.75 0.95 0.00 4.34
269 270 3.672447 TACAGGTCGTCGGCGCAA 61.672 61.111 10.83 0.00 38.14 4.85
412 413 4.070552 GGCGCTTCGACAGGAGGT 62.071 66.667 7.64 0.00 33.63 3.85
430 556 2.158842 AGGTGCTGGCTTCTCATGATAC 60.159 50.000 0.00 0.00 0.00 2.24
446 572 3.580731 TGATACACTTCATTTCGCACGA 58.419 40.909 0.00 0.00 0.00 4.35
484 610 4.404715 AGTGTCATTATAACTGGTAGGCGT 59.595 41.667 0.00 0.00 0.00 5.68
506 632 5.171874 CGTTGATCAACATTGCAATTATCCG 59.828 40.000 32.06 13.59 41.20 4.18
598 724 0.750249 TCGCCATCCATAAGCTTCGA 59.250 50.000 0.00 0.00 0.00 3.71
636 762 4.751028 GCATAAGGCATGGAAGGTATCCTT 60.751 45.833 0.28 0.28 45.45 3.36
749 877 1.727857 GCCATGCAAAAACTCGTACCG 60.728 52.381 0.00 0.00 0.00 4.02
750 878 1.602191 CATGCAAAAACTCGTACCGC 58.398 50.000 0.00 0.00 0.00 5.68
751 879 0.165079 ATGCAAAAACTCGTACCGCG 59.835 50.000 0.00 0.00 43.01 6.46
765 893 3.474806 CGCGAGGTGTGATTGGTC 58.525 61.111 0.00 0.00 0.00 4.02
766 894 2.444624 CGCGAGGTGTGATTGGTCG 61.445 63.158 0.00 0.00 0.00 4.79
767 895 1.080093 GCGAGGTGTGATTGGTCGA 60.080 57.895 0.00 0.00 32.32 4.20
768 896 0.460284 GCGAGGTGTGATTGGTCGAT 60.460 55.000 0.00 0.00 32.32 3.59
769 897 1.202371 GCGAGGTGTGATTGGTCGATA 60.202 52.381 0.00 0.00 32.32 2.92
770 898 2.545952 GCGAGGTGTGATTGGTCGATAT 60.546 50.000 0.00 0.00 32.32 1.63
771 899 3.305131 GCGAGGTGTGATTGGTCGATATA 60.305 47.826 0.00 0.00 32.32 0.86
772 900 4.794981 GCGAGGTGTGATTGGTCGATATAA 60.795 45.833 0.00 0.00 32.32 0.98
773 901 4.917998 CGAGGTGTGATTGGTCGATATAAG 59.082 45.833 0.00 0.00 32.32 1.73
774 902 5.215252 AGGTGTGATTGGTCGATATAAGG 57.785 43.478 0.00 0.00 0.00 2.69
775 903 4.654262 AGGTGTGATTGGTCGATATAAGGT 59.346 41.667 0.00 0.00 0.00 3.50
776 904 4.750098 GGTGTGATTGGTCGATATAAGGTG 59.250 45.833 0.00 0.00 0.00 4.00
777 905 4.750098 GTGTGATTGGTCGATATAAGGTGG 59.250 45.833 0.00 0.00 0.00 4.61
778 906 4.202315 TGTGATTGGTCGATATAAGGTGGG 60.202 45.833 0.00 0.00 0.00 4.61
779 907 3.971305 TGATTGGTCGATATAAGGTGGGT 59.029 43.478 0.00 0.00 0.00 4.51
780 908 4.410883 TGATTGGTCGATATAAGGTGGGTT 59.589 41.667 0.00 0.00 0.00 4.11
781 909 3.830744 TGGTCGATATAAGGTGGGTTG 57.169 47.619 0.00 0.00 0.00 3.77
782 910 2.158871 TGGTCGATATAAGGTGGGTTGC 60.159 50.000 0.00 0.00 0.00 4.17
783 911 2.132762 GTCGATATAAGGTGGGTTGCG 58.867 52.381 0.00 0.00 0.00 4.85
784 912 1.069513 TCGATATAAGGTGGGTTGCGG 59.930 52.381 0.00 0.00 0.00 5.69
785 913 1.876416 CGATATAAGGTGGGTTGCGGG 60.876 57.143 0.00 0.00 0.00 6.13
786 914 1.418637 GATATAAGGTGGGTTGCGGGA 59.581 52.381 0.00 0.00 0.00 5.14
787 915 1.513858 TATAAGGTGGGTTGCGGGAT 58.486 50.000 0.00 0.00 0.00 3.85
788 916 0.182775 ATAAGGTGGGTTGCGGGATC 59.817 55.000 0.00 0.00 0.00 3.36
789 917 1.917336 TAAGGTGGGTTGCGGGATCC 61.917 60.000 1.92 1.92 0.00 3.36
790 918 4.041762 GGTGGGTTGCGGGATCCA 62.042 66.667 15.23 0.00 0.00 3.41
791 919 2.275418 GTGGGTTGCGGGATCCAT 59.725 61.111 15.23 0.00 0.00 3.41
792 920 2.120909 GTGGGTTGCGGGATCCATG 61.121 63.158 15.23 6.47 0.00 3.66
793 921 2.519302 GGGTTGCGGGATCCATGG 60.519 66.667 15.23 4.97 0.00 3.66
794 922 2.519302 GGTTGCGGGATCCATGGG 60.519 66.667 15.23 0.28 0.00 4.00
795 923 2.275418 GTTGCGGGATCCATGGGT 59.725 61.111 15.23 3.70 0.00 4.51
796 924 1.823899 GTTGCGGGATCCATGGGTC 60.824 63.158 17.40 17.40 0.00 4.46
797 925 3.055470 TTGCGGGATCCATGGGTCC 62.055 63.158 33.18 33.18 0.00 4.46
800 928 4.271016 GGGATCCATGGGTCCCGC 62.271 72.222 41.44 23.80 44.30 6.13
801 929 4.271016 GGATCCATGGGTCCCGCC 62.271 72.222 31.36 8.86 0.00 6.13
802 930 3.488569 GATCCATGGGTCCCGCCA 61.489 66.667 14.68 0.00 39.65 5.69
803 931 2.778278 ATCCATGGGTCCCGCCAT 60.778 61.111 13.02 0.00 39.65 4.40
804 932 1.463214 ATCCATGGGTCCCGCCATA 60.463 57.895 13.02 0.00 39.65 2.74
831 959 1.358787 TCACCTTGCCCATGGAGAATT 59.641 47.619 15.22 0.00 0.00 2.17
832 960 2.181975 CACCTTGCCCATGGAGAATTT 58.818 47.619 15.22 0.00 0.00 1.82
833 961 2.568509 CACCTTGCCCATGGAGAATTTT 59.431 45.455 15.22 0.00 0.00 1.82
834 962 3.008266 CACCTTGCCCATGGAGAATTTTT 59.992 43.478 15.22 0.00 0.00 1.94
877 1005 0.250684 TCTGCCGCTGTTTTGATCCA 60.251 50.000 0.00 0.00 0.00 3.41
898 1026 9.274206 GATCCAACTAGTTTAACTCTCTTTTGT 57.726 33.333 5.07 0.00 0.00 2.83
954 1085 3.428870 GCGAAAACGAAGACAGAATCAGA 59.571 43.478 0.00 0.00 0.00 3.27
960 1091 2.223363 CGAAGACAGAATCAGAGCGCTA 60.223 50.000 11.50 0.00 0.00 4.26
1009 1143 0.034574 ATGCCTTTACATGCCCACGA 60.035 50.000 0.00 0.00 0.00 4.35
1012 1146 1.529226 CCTTTACATGCCCACGACAA 58.471 50.000 0.00 0.00 0.00 3.18
1024 1158 0.948623 CACGACAATTCAGACCGGCA 60.949 55.000 0.00 0.00 0.00 5.69
1105 1242 3.244215 TGAAGACTTTCCAGGCACAGTAG 60.244 47.826 0.00 0.00 32.09 2.57
1194 1331 3.397482 CAATCGGGTCATCAAGATCCTC 58.603 50.000 0.00 0.00 46.04 3.71
1232 1369 2.339769 AGCAGACCCTTACTTGTCCTT 58.660 47.619 0.00 0.00 31.76 3.36
1258 1395 4.059304 ATGCGGTTGGGGATGCCA 62.059 61.111 5.30 0.00 0.00 4.92
1491 1628 5.249393 ACTTAAGCTCCTTTCCTTGAGATCA 59.751 40.000 1.29 0.00 31.43 2.92
1508 1645 0.971959 TCATGTCAAATGGGCCAGGC 60.972 55.000 13.78 1.26 0.00 4.85
1552 1689 0.749649 ATGCTTGGAGCTCGTAGGAG 59.250 55.000 7.83 8.10 42.97 3.69
1682 1820 4.646945 TCTCTATGTCCCTCAGCTTGTTAG 59.353 45.833 0.00 0.00 0.00 2.34
1693 1831 6.096987 CCCTCAGCTTGTTAGAGTATACTTCA 59.903 42.308 6.88 2.36 0.00 3.02
1783 1921 6.875195 CCTGTCAATGGTGCATCTAAATTTTT 59.125 34.615 0.00 0.00 0.00 1.94
1814 1952 2.564062 TGGTAAGTTACAGTTCCCTCCG 59.436 50.000 14.81 0.00 0.00 4.63
1947 2111 4.887655 TCGACAGCTCACTCCTATATTCAA 59.112 41.667 0.00 0.00 0.00 2.69
2068 2232 7.878477 TTATGTAAGTCCGTTACTTCAGTTG 57.122 36.000 3.87 0.00 45.64 3.16
2110 2274 5.275067 TGGCCTGGATATAATTTGTTTGC 57.725 39.130 3.32 0.00 0.00 3.68
2244 2412 4.022503 TGCACGAATAGGAGATCTCATGAG 60.023 45.833 23.85 17.07 0.00 2.90
2406 2575 8.202811 TCAAAAATCATTCATTTGTTCCAGACA 58.797 29.630 0.00 0.00 34.69 3.41
2490 2662 5.337554 TCGTTACTTGGATGTATTGACTCG 58.662 41.667 0.00 0.00 0.00 4.18
2604 2777 3.885724 TCTCGGCATTCATGTGAACTA 57.114 42.857 0.00 0.00 36.80 2.24
2741 2915 9.520515 AAGGTGATGAATTATGTAAGACTTGTT 57.479 29.630 0.00 0.00 0.00 2.83
2828 3005 2.723322 TCAATCATGAGCCTCCAAGG 57.277 50.000 0.09 0.00 38.80 3.61
2974 3153 8.082852 ACGATGGATAATGTCAATGAGTACTAC 58.917 37.037 0.00 0.00 0.00 2.73
3060 3258 6.410942 TCCATCACCTCTTATGTATGTCTG 57.589 41.667 0.00 0.00 0.00 3.51
3062 3260 5.512060 CCATCACCTCTTATGTATGTCTGGG 60.512 48.000 0.00 0.00 0.00 4.45
3064 3262 5.030147 TCACCTCTTATGTATGTCTGGGTT 58.970 41.667 0.00 0.00 0.00 4.11
3092 3290 1.985460 TAAACACACCCACACGGCCT 61.985 55.000 0.00 0.00 33.26 5.19
3096 3294 2.144738 ACACCCACACGGCCTAGTT 61.145 57.895 0.00 0.00 33.26 2.24
3122 3320 5.344743 TTTTTCCATGTTTACCTGTTGCA 57.655 34.783 0.00 0.00 0.00 4.08
3146 3344 4.232221 GTCCGAATAGAACGTCAACTCAA 58.768 43.478 0.00 0.00 0.00 3.02
3195 3395 2.158234 AGGAAGCTAATCCCTCCGAGAT 60.158 50.000 0.53 0.00 40.59 2.75
3198 3398 0.036858 GCTAATCCCTCCGAGATGCC 60.037 60.000 0.00 0.00 0.00 4.40
3202 3402 1.118356 ATCCCTCCGAGATGCCAGAC 61.118 60.000 0.00 0.00 0.00 3.51
3217 3417 2.931320 GCCAGACGCCATATAGGTAAGC 60.931 54.545 0.00 0.00 40.61 3.09
3227 3427 5.501156 CCATATAGGTAAGCCAATCCCTTC 58.499 45.833 0.00 0.00 37.19 3.46
3242 3442 1.133976 CCCTTCGATTTCCATGGAGCT 60.134 52.381 15.53 6.17 0.00 4.09
3267 3467 1.073216 AATCTGTCGAGACGCAAGCG 61.073 55.000 13.50 13.50 46.03 4.68
3276 3476 1.322936 GAGACGCAAGCGAGAATGAAG 59.677 52.381 22.30 0.00 42.83 3.02
3286 3486 3.957497 AGCGAGAATGAAGACTACTCCAT 59.043 43.478 0.00 0.00 0.00 3.41
3290 3490 5.507149 CGAGAATGAAGACTACTCCATGAGG 60.507 48.000 0.00 0.00 33.35 3.86
3296 3496 1.066303 GACTACTCCATGAGGCACGAG 59.934 57.143 0.00 0.00 33.35 4.18
3367 3567 8.974060 TCCACCATTGTAATATTCCTTTCTAC 57.026 34.615 0.00 0.00 0.00 2.59
3393 3593 6.292389 GCCTAGTGCAAACTAATGTGATAG 57.708 41.667 0.00 0.00 40.77 2.08
3464 3664 7.665561 TGTAGTTGAAATTCATCAATGTCGA 57.334 32.000 6.79 0.00 41.09 4.20
3514 3714 3.966665 TGTCTGAAATTTGCCCCTCTTTT 59.033 39.130 0.00 0.00 0.00 2.27
3515 3715 4.408596 TGTCTGAAATTTGCCCCTCTTTTT 59.591 37.500 0.00 0.00 0.00 1.94
3560 3760 5.250235 TCAGTAAGCTCAGATTAACCTCG 57.750 43.478 0.00 0.00 0.00 4.63
3598 3798 6.328641 ACTACTCAAGTACTACAAGTGTGG 57.671 41.667 12.57 7.73 36.36 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.626654 AAAAGAGACATCCACGCGCG 61.627 55.000 30.96 30.96 0.00 6.86
16 17 0.179215 CAAAAGAGACATCCACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
17 18 1.148310 ACAAAAGAGACATCCACGCG 58.852 50.000 3.53 3.53 0.00 6.01
18 19 2.808543 AGAACAAAAGAGACATCCACGC 59.191 45.455 0.00 0.00 0.00 5.34
19 20 4.058124 TGAGAACAAAAGAGACATCCACG 58.942 43.478 0.00 0.00 0.00 4.94
20 21 5.123027 GGATGAGAACAAAAGAGACATCCAC 59.877 44.000 15.40 0.00 46.32 4.02
21 22 5.248640 GGATGAGAACAAAAGAGACATCCA 58.751 41.667 15.40 0.00 46.32 3.41
22 23 5.495640 AGGATGAGAACAAAAGAGACATCC 58.504 41.667 0.00 0.00 46.97 3.51
23 24 6.169094 TGAGGATGAGAACAAAAGAGACATC 58.831 40.000 0.00 0.00 34.06 3.06
24 25 6.119240 TGAGGATGAGAACAAAAGAGACAT 57.881 37.500 0.00 0.00 0.00 3.06
25 26 5.551305 TGAGGATGAGAACAAAAGAGACA 57.449 39.130 0.00 0.00 0.00 3.41
26 27 7.099764 TGTATGAGGATGAGAACAAAAGAGAC 58.900 38.462 0.00 0.00 0.00 3.36
27 28 7.244886 TGTATGAGGATGAGAACAAAAGAGA 57.755 36.000 0.00 0.00 0.00 3.10
28 29 7.551974 ACATGTATGAGGATGAGAACAAAAGAG 59.448 37.037 0.00 0.00 0.00 2.85
29 30 7.335171 CACATGTATGAGGATGAGAACAAAAGA 59.665 37.037 0.00 0.00 0.00 2.52
30 31 7.414873 CCACATGTATGAGGATGAGAACAAAAG 60.415 40.741 0.00 0.00 40.43 2.27
31 32 6.375174 CCACATGTATGAGGATGAGAACAAAA 59.625 38.462 0.00 0.00 40.43 2.44
32 33 5.882000 CCACATGTATGAGGATGAGAACAAA 59.118 40.000 0.00 0.00 40.43 2.83
33 34 5.189539 TCCACATGTATGAGGATGAGAACAA 59.810 40.000 0.00 0.00 41.60 2.83
34 35 4.716287 TCCACATGTATGAGGATGAGAACA 59.284 41.667 0.00 0.00 41.60 3.18
35 36 5.069648 TCTCCACATGTATGAGGATGAGAAC 59.930 44.000 19.16 0.00 44.60 3.01
36 37 5.211201 TCTCCACATGTATGAGGATGAGAA 58.789 41.667 19.16 1.88 44.60 2.87
37 38 4.808042 TCTCCACATGTATGAGGATGAGA 58.192 43.478 19.16 9.31 44.60 3.27
38 39 5.541953 TTCTCCACATGTATGAGGATGAG 57.458 43.478 19.16 7.64 44.60 2.90
39 40 5.662657 TCTTTCTCCACATGTATGAGGATGA 59.337 40.000 19.16 16.13 44.60 2.92
40 41 5.922053 TCTTTCTCCACATGTATGAGGATG 58.078 41.667 19.16 14.62 44.60 3.51
41 42 5.454471 GCTCTTTCTCCACATGTATGAGGAT 60.454 44.000 19.16 0.00 44.60 3.24
42 43 4.141846 GCTCTTTCTCCACATGTATGAGGA 60.142 45.833 19.16 12.07 43.73 3.71
43 44 4.125703 GCTCTTTCTCCACATGTATGAGG 58.874 47.826 19.16 8.73 39.51 3.86
44 45 4.125703 GGCTCTTTCTCCACATGTATGAG 58.874 47.826 15.22 15.22 0.00 2.90
45 46 3.776969 AGGCTCTTTCTCCACATGTATGA 59.223 43.478 0.00 0.00 0.00 2.15
46 47 4.125703 GAGGCTCTTTCTCCACATGTATG 58.874 47.826 7.40 0.00 0.00 2.39
47 48 4.414337 GAGGCTCTTTCTCCACATGTAT 57.586 45.455 7.40 0.00 0.00 2.29
48 49 3.895232 GAGGCTCTTTCTCCACATGTA 57.105 47.619 7.40 0.00 0.00 2.29
49 50 2.777832 GAGGCTCTTTCTCCACATGT 57.222 50.000 7.40 0.00 0.00 3.21
56 57 6.463755 CCTCTTTATAAGGGAGGCTCTTTCTC 60.464 46.154 15.23 0.00 39.87 2.87
57 58 5.368230 CCTCTTTATAAGGGAGGCTCTTTCT 59.632 44.000 15.23 7.07 39.87 2.52
58 59 5.616270 CCTCTTTATAAGGGAGGCTCTTTC 58.384 45.833 15.23 4.80 39.87 2.62
59 60 5.638530 CCTCTTTATAAGGGAGGCTCTTT 57.361 43.478 15.23 11.65 39.87 2.52
65 66 2.418669 TGGGCCTCTTTATAAGGGAGG 58.581 52.381 22.12 22.12 46.65 4.30
66 67 3.459969 AGTTGGGCCTCTTTATAAGGGAG 59.540 47.826 4.53 9.31 34.26 4.30
67 68 3.458487 GAGTTGGGCCTCTTTATAAGGGA 59.542 47.826 4.53 0.00 34.26 4.20
68 69 3.435169 GGAGTTGGGCCTCTTTATAAGGG 60.435 52.174 4.53 0.00 34.26 3.95
69 70 3.435169 GGGAGTTGGGCCTCTTTATAAGG 60.435 52.174 4.53 0.00 36.95 2.69
70 71 3.459969 AGGGAGTTGGGCCTCTTTATAAG 59.540 47.826 4.53 0.00 0.00 1.73
71 72 3.458487 GAGGGAGTTGGGCCTCTTTATAA 59.542 47.826 4.53 0.00 0.00 0.98
72 73 3.046374 GAGGGAGTTGGGCCTCTTTATA 58.954 50.000 4.53 0.00 0.00 0.98
73 74 1.847088 GAGGGAGTTGGGCCTCTTTAT 59.153 52.381 4.53 0.00 0.00 1.40
74 75 1.203440 AGAGGGAGTTGGGCCTCTTTA 60.203 52.381 4.53 0.00 36.39 1.85
75 76 0.476611 AGAGGGAGTTGGGCCTCTTT 60.477 55.000 4.53 0.00 36.39 2.52
76 77 0.417841 TAGAGGGAGTTGGGCCTCTT 59.582 55.000 4.53 0.00 39.83 2.85
77 78 0.417841 TTAGAGGGAGTTGGGCCTCT 59.582 55.000 4.53 0.00 41.67 3.69
78 79 1.065345 GTTTAGAGGGAGTTGGGCCTC 60.065 57.143 4.53 0.00 0.00 4.70
79 80 0.992695 GTTTAGAGGGAGTTGGGCCT 59.007 55.000 4.53 0.00 0.00 5.19
80 81 0.992695 AGTTTAGAGGGAGTTGGGCC 59.007 55.000 0.00 0.00 0.00 5.80
81 82 2.420269 GCTAGTTTAGAGGGAGTTGGGC 60.420 54.545 0.00 0.00 0.00 5.36
82 83 2.838202 TGCTAGTTTAGAGGGAGTTGGG 59.162 50.000 0.00 0.00 0.00 4.12
83 84 4.553330 TTGCTAGTTTAGAGGGAGTTGG 57.447 45.455 0.00 0.00 0.00 3.77
84 85 5.352569 CACATTGCTAGTTTAGAGGGAGTTG 59.647 44.000 0.00 0.00 0.00 3.16
85 86 5.491982 CACATTGCTAGTTTAGAGGGAGTT 58.508 41.667 0.00 0.00 0.00 3.01
86 87 4.080863 CCACATTGCTAGTTTAGAGGGAGT 60.081 45.833 0.00 0.00 0.00 3.85
87 88 4.446371 CCACATTGCTAGTTTAGAGGGAG 58.554 47.826 0.00 0.00 0.00 4.30
88 89 3.199946 CCCACATTGCTAGTTTAGAGGGA 59.800 47.826 0.00 0.00 34.49 4.20
89 90 3.199946 TCCCACATTGCTAGTTTAGAGGG 59.800 47.826 0.00 0.00 0.00 4.30
90 91 4.080863 AGTCCCACATTGCTAGTTTAGAGG 60.081 45.833 0.00 0.00 0.00 3.69
91 92 5.091261 AGTCCCACATTGCTAGTTTAGAG 57.909 43.478 0.00 0.00 0.00 2.43
92 93 6.614694 TTAGTCCCACATTGCTAGTTTAGA 57.385 37.500 0.00 0.00 0.00 2.10
93 94 7.865706 ATTTAGTCCCACATTGCTAGTTTAG 57.134 36.000 0.00 0.00 0.00 1.85
94 95 8.644374 AAATTTAGTCCCACATTGCTAGTTTA 57.356 30.769 0.00 0.00 0.00 2.01
95 96 7.539034 AAATTTAGTCCCACATTGCTAGTTT 57.461 32.000 0.00 0.00 0.00 2.66
96 97 7.539034 AAAATTTAGTCCCACATTGCTAGTT 57.461 32.000 0.00 0.00 0.00 2.24
97 98 7.888546 ACTAAAATTTAGTCCCACATTGCTAGT 59.111 33.333 12.24 0.00 0.00 2.57
98 99 8.281212 ACTAAAATTTAGTCCCACATTGCTAG 57.719 34.615 12.24 0.00 0.00 3.42
99 100 8.644374 AACTAAAATTTAGTCCCACATTGCTA 57.356 30.769 17.56 0.00 0.00 3.49
100 101 7.451566 AGAACTAAAATTTAGTCCCACATTGCT 59.548 33.333 17.56 0.00 0.00 3.91
101 102 7.602753 AGAACTAAAATTTAGTCCCACATTGC 58.397 34.615 17.56 0.00 0.00 3.56
105 106 9.498176 GAAGTAGAACTAAAATTTAGTCCCACA 57.502 33.333 17.56 4.43 0.00 4.17
106 107 9.722184 AGAAGTAGAACTAAAATTTAGTCCCAC 57.278 33.333 17.56 14.33 0.00 4.61
114 115 9.952188 GCAAGACAAGAAGTAGAACTAAAATTT 57.048 29.630 0.00 0.00 0.00 1.82
115 116 9.120538 TGCAAGACAAGAAGTAGAACTAAAATT 57.879 29.630 0.00 0.00 0.00 1.82
116 117 8.677148 TGCAAGACAAGAAGTAGAACTAAAAT 57.323 30.769 0.00 0.00 0.00 1.82
117 118 8.559536 CATGCAAGACAAGAAGTAGAACTAAAA 58.440 33.333 0.00 0.00 0.00 1.52
118 119 7.931407 TCATGCAAGACAAGAAGTAGAACTAAA 59.069 33.333 0.00 0.00 0.00 1.85
119 120 7.441836 TCATGCAAGACAAGAAGTAGAACTAA 58.558 34.615 0.00 0.00 0.00 2.24
120 121 6.993079 TCATGCAAGACAAGAAGTAGAACTA 58.007 36.000 0.00 0.00 0.00 2.24
121 122 5.858381 TCATGCAAGACAAGAAGTAGAACT 58.142 37.500 0.00 0.00 0.00 3.01
122 123 6.545504 TTCATGCAAGACAAGAAGTAGAAC 57.454 37.500 0.00 0.00 31.29 3.01
123 124 6.149973 CCATTCATGCAAGACAAGAAGTAGAA 59.850 38.462 0.00 0.00 39.20 2.10
124 125 5.645067 CCATTCATGCAAGACAAGAAGTAGA 59.355 40.000 0.00 0.00 39.20 2.59
125 126 5.163683 CCCATTCATGCAAGACAAGAAGTAG 60.164 44.000 0.00 0.00 39.20 2.57
126 127 4.701651 CCCATTCATGCAAGACAAGAAGTA 59.298 41.667 0.00 0.00 39.20 2.24
127 128 3.508793 CCCATTCATGCAAGACAAGAAGT 59.491 43.478 0.00 0.00 39.20 3.01
128 129 3.675228 GCCCATTCATGCAAGACAAGAAG 60.675 47.826 0.00 0.00 39.20 2.85
129 130 2.231964 GCCCATTCATGCAAGACAAGAA 59.768 45.455 0.00 0.00 40.05 2.52
130 131 1.820519 GCCCATTCATGCAAGACAAGA 59.179 47.619 0.00 0.00 0.00 3.02
131 132 1.822990 AGCCCATTCATGCAAGACAAG 59.177 47.619 0.00 0.00 0.00 3.16
132 133 1.546923 CAGCCCATTCATGCAAGACAA 59.453 47.619 0.00 0.00 0.00 3.18
133 134 1.179152 CAGCCCATTCATGCAAGACA 58.821 50.000 0.00 0.00 0.00 3.41
134 135 0.179119 GCAGCCCATTCATGCAAGAC 60.179 55.000 0.00 0.00 39.75 3.01
135 136 1.659622 CGCAGCCCATTCATGCAAGA 61.660 55.000 0.00 0.00 39.97 3.02
136 137 1.226859 CGCAGCCCATTCATGCAAG 60.227 57.895 0.00 0.00 39.97 4.01
137 138 1.978080 ACGCAGCCCATTCATGCAA 60.978 52.632 0.00 0.00 39.97 4.08
138 139 2.361483 ACGCAGCCCATTCATGCA 60.361 55.556 0.00 0.00 39.97 3.96
139 140 2.103538 CACGCAGCCCATTCATGC 59.896 61.111 0.00 0.00 36.60 4.06
140 141 2.777972 CCCACGCAGCCCATTCATG 61.778 63.158 0.00 0.00 0.00 3.07
141 142 2.440796 CCCACGCAGCCCATTCAT 60.441 61.111 0.00 0.00 0.00 2.57
149 150 2.893682 ATCCTAAAGGCCCACGCAGC 62.894 60.000 0.00 0.00 36.38 5.25
150 151 0.394352 AATCCTAAAGGCCCACGCAG 60.394 55.000 0.00 0.00 36.38 5.18
151 152 0.039035 AAATCCTAAAGGCCCACGCA 59.961 50.000 0.00 0.00 36.38 5.24
152 153 2.047002 TAAATCCTAAAGGCCCACGC 57.953 50.000 0.00 0.00 34.44 5.34
153 154 4.760204 CCTAATAAATCCTAAAGGCCCACG 59.240 45.833 0.00 0.00 34.44 4.94
154 155 5.948842 TCCTAATAAATCCTAAAGGCCCAC 58.051 41.667 0.00 0.00 34.44 4.61
155 156 6.599986 TTCCTAATAAATCCTAAAGGCCCA 57.400 37.500 0.00 0.00 34.44 5.36
156 157 8.492415 AAATTCCTAATAAATCCTAAAGGCCC 57.508 34.615 0.00 0.00 34.44 5.80
157 158 9.368416 AGAAATTCCTAATAAATCCTAAAGGCC 57.632 33.333 0.00 0.00 34.44 5.19
165 166 9.521503 GCAGTTTCAGAAATTCCTAATAAATCC 57.478 33.333 0.00 0.00 0.00 3.01
171 172 8.689972 CCAATAGCAGTTTCAGAAATTCCTAAT 58.310 33.333 0.00 0.00 0.00 1.73
172 173 7.122650 CCCAATAGCAGTTTCAGAAATTCCTAA 59.877 37.037 0.00 0.00 0.00 2.69
173 174 6.603201 CCCAATAGCAGTTTCAGAAATTCCTA 59.397 38.462 0.00 0.00 0.00 2.94
174 175 5.420104 CCCAATAGCAGTTTCAGAAATTCCT 59.580 40.000 0.00 0.00 0.00 3.36
175 176 5.654497 CCCAATAGCAGTTTCAGAAATTCC 58.346 41.667 0.00 0.00 0.00 3.01
176 177 5.105063 GCCCAATAGCAGTTTCAGAAATTC 58.895 41.667 0.00 0.00 0.00 2.17
177 178 4.774200 AGCCCAATAGCAGTTTCAGAAATT 59.226 37.500 0.00 0.00 34.23 1.82
178 179 4.347607 AGCCCAATAGCAGTTTCAGAAAT 58.652 39.130 0.00 0.00 34.23 2.17
179 180 3.766545 AGCCCAATAGCAGTTTCAGAAA 58.233 40.909 0.00 0.00 34.23 2.52
180 181 3.439857 AGCCCAATAGCAGTTTCAGAA 57.560 42.857 0.00 0.00 34.23 3.02
181 182 3.118261 CCTAGCCCAATAGCAGTTTCAGA 60.118 47.826 0.00 0.00 34.23 3.27
182 183 3.209410 CCTAGCCCAATAGCAGTTTCAG 58.791 50.000 0.00 0.00 34.23 3.02
183 184 2.683742 GCCTAGCCCAATAGCAGTTTCA 60.684 50.000 0.00 0.00 34.23 2.69
184 185 1.950216 GCCTAGCCCAATAGCAGTTTC 59.050 52.381 0.00 0.00 34.23 2.78
185 186 1.410224 GGCCTAGCCCAATAGCAGTTT 60.410 52.381 0.00 0.00 44.06 2.66
186 187 0.183731 GGCCTAGCCCAATAGCAGTT 59.816 55.000 0.00 0.00 44.06 3.16
187 188 1.839894 GGCCTAGCCCAATAGCAGT 59.160 57.895 0.00 0.00 44.06 4.40
188 189 4.809070 GGCCTAGCCCAATAGCAG 57.191 61.111 0.00 0.00 44.06 4.24
198 199 5.598416 ATTTTGTCTATTTTGGGCCTAGC 57.402 39.130 4.53 0.00 0.00 3.42
199 200 6.154363 TGGAATTTTGTCTATTTTGGGCCTAG 59.846 38.462 4.53 0.00 0.00 3.02
200 201 6.019748 TGGAATTTTGTCTATTTTGGGCCTA 58.980 36.000 4.53 0.00 0.00 3.93
201 202 4.843516 TGGAATTTTGTCTATTTTGGGCCT 59.156 37.500 4.53 0.00 0.00 5.19
202 203 5.159273 TGGAATTTTGTCTATTTTGGGCC 57.841 39.130 0.00 0.00 0.00 5.80
203 204 4.631377 GCTGGAATTTTGTCTATTTTGGGC 59.369 41.667 0.00 0.00 0.00 5.36
204 205 5.792741 TGCTGGAATTTTGTCTATTTTGGG 58.207 37.500 0.00 0.00 0.00 4.12
205 206 8.034215 TGTATGCTGGAATTTTGTCTATTTTGG 58.966 33.333 0.00 0.00 0.00 3.28
206 207 8.863049 GTGTATGCTGGAATTTTGTCTATTTTG 58.137 33.333 0.00 0.00 0.00 2.44
207 208 8.034804 GGTGTATGCTGGAATTTTGTCTATTTT 58.965 33.333 0.00 0.00 0.00 1.82
208 209 7.178274 TGGTGTATGCTGGAATTTTGTCTATTT 59.822 33.333 0.00 0.00 0.00 1.40
209 210 6.663093 TGGTGTATGCTGGAATTTTGTCTATT 59.337 34.615 0.00 0.00 0.00 1.73
210 211 6.186957 TGGTGTATGCTGGAATTTTGTCTAT 58.813 36.000 0.00 0.00 0.00 1.98
211 212 5.565509 TGGTGTATGCTGGAATTTTGTCTA 58.434 37.500 0.00 0.00 0.00 2.59
212 213 4.406456 TGGTGTATGCTGGAATTTTGTCT 58.594 39.130 0.00 0.00 0.00 3.41
213 214 4.218417 ACTGGTGTATGCTGGAATTTTGTC 59.782 41.667 0.00 0.00 0.00 3.18
214 215 4.151883 ACTGGTGTATGCTGGAATTTTGT 58.848 39.130 0.00 0.00 0.00 2.83
215 216 4.789012 ACTGGTGTATGCTGGAATTTTG 57.211 40.909 0.00 0.00 0.00 2.44
216 217 5.570320 AGTACTGGTGTATGCTGGAATTTT 58.430 37.500 0.00 0.00 0.00 1.82
217 218 5.179452 AGTACTGGTGTATGCTGGAATTT 57.821 39.130 0.00 0.00 0.00 1.82
218 219 4.384208 GGAGTACTGGTGTATGCTGGAATT 60.384 45.833 0.00 0.00 0.00 2.17
219 220 3.134804 GGAGTACTGGTGTATGCTGGAAT 59.865 47.826 0.00 0.00 0.00 3.01
220 221 2.500098 GGAGTACTGGTGTATGCTGGAA 59.500 50.000 0.00 0.00 0.00 3.53
221 222 2.108168 GGAGTACTGGTGTATGCTGGA 58.892 52.381 0.00 0.00 0.00 3.86
222 223 1.202417 CGGAGTACTGGTGTATGCTGG 60.202 57.143 0.00 0.00 0.00 4.85
223 224 1.202417 CCGGAGTACTGGTGTATGCTG 60.202 57.143 0.00 0.00 37.74 4.41
224 225 1.112113 CCGGAGTACTGGTGTATGCT 58.888 55.000 0.00 0.00 37.74 3.79
225 226 1.067212 CTCCGGAGTACTGGTGTATGC 59.933 57.143 24.04 0.00 42.77 3.14
226 227 1.681793 CCTCCGGAGTACTGGTGTATG 59.318 57.143 29.25 6.14 42.77 2.39
227 228 1.287146 ACCTCCGGAGTACTGGTGTAT 59.713 52.381 29.25 0.00 42.77 2.29
261 262 4.024143 GCACACATGTTGCGCCGA 62.024 61.111 4.18 0.00 0.00 5.54
269 270 0.886043 AGTCATGCACGCACACATGT 60.886 50.000 0.00 0.00 43.34 3.21
396 397 2.811317 CACCTCCTGTCGAAGCGC 60.811 66.667 0.00 0.00 0.00 5.92
412 413 2.502947 AGTGTATCATGAGAAGCCAGCA 59.497 45.455 0.09 0.00 0.00 4.41
430 556 1.262950 TGGTTCGTGCGAAATGAAGTG 59.737 47.619 8.66 0.00 34.40 3.16
446 572 2.711009 TGACACTCTGGAGGAATTGGTT 59.289 45.455 2.58 0.00 0.00 3.67
484 610 5.590145 CCGGATAATTGCAATGTTGATCAA 58.410 37.500 13.82 3.38 0.00 2.57
749 877 0.460284 ATCGACCAATCACACCTCGC 60.460 55.000 0.00 0.00 0.00 5.03
750 878 2.863401 TATCGACCAATCACACCTCG 57.137 50.000 0.00 0.00 0.00 4.63
751 879 5.221461 ACCTTATATCGACCAATCACACCTC 60.221 44.000 0.00 0.00 0.00 3.85
752 880 4.654262 ACCTTATATCGACCAATCACACCT 59.346 41.667 0.00 0.00 0.00 4.00
753 881 4.750098 CACCTTATATCGACCAATCACACC 59.250 45.833 0.00 0.00 0.00 4.16
754 882 4.750098 CCACCTTATATCGACCAATCACAC 59.250 45.833 0.00 0.00 0.00 3.82
755 883 4.202315 CCCACCTTATATCGACCAATCACA 60.202 45.833 0.00 0.00 0.00 3.58
756 884 4.202326 ACCCACCTTATATCGACCAATCAC 60.202 45.833 0.00 0.00 0.00 3.06
757 885 3.971305 ACCCACCTTATATCGACCAATCA 59.029 43.478 0.00 0.00 0.00 2.57
758 886 4.618920 ACCCACCTTATATCGACCAATC 57.381 45.455 0.00 0.00 0.00 2.67
759 887 4.714632 CAACCCACCTTATATCGACCAAT 58.285 43.478 0.00 0.00 0.00 3.16
760 888 3.683281 GCAACCCACCTTATATCGACCAA 60.683 47.826 0.00 0.00 0.00 3.67
761 889 2.158871 GCAACCCACCTTATATCGACCA 60.159 50.000 0.00 0.00 0.00 4.02
762 890 2.490991 GCAACCCACCTTATATCGACC 58.509 52.381 0.00 0.00 0.00 4.79
763 891 2.132762 CGCAACCCACCTTATATCGAC 58.867 52.381 0.00 0.00 0.00 4.20
764 892 1.069513 CCGCAACCCACCTTATATCGA 59.930 52.381 0.00 0.00 0.00 3.59
765 893 1.508632 CCGCAACCCACCTTATATCG 58.491 55.000 0.00 0.00 0.00 2.92
766 894 1.418637 TCCCGCAACCCACCTTATATC 59.581 52.381 0.00 0.00 0.00 1.63
767 895 1.513858 TCCCGCAACCCACCTTATAT 58.486 50.000 0.00 0.00 0.00 0.86
768 896 1.418637 GATCCCGCAACCCACCTTATA 59.581 52.381 0.00 0.00 0.00 0.98
769 897 0.182775 GATCCCGCAACCCACCTTAT 59.817 55.000 0.00 0.00 0.00 1.73
770 898 1.605453 GATCCCGCAACCCACCTTA 59.395 57.895 0.00 0.00 0.00 2.69
771 899 2.355115 GATCCCGCAACCCACCTT 59.645 61.111 0.00 0.00 0.00 3.50
772 900 3.728373 GGATCCCGCAACCCACCT 61.728 66.667 0.00 0.00 0.00 4.00
773 901 3.358932 ATGGATCCCGCAACCCACC 62.359 63.158 9.90 0.00 0.00 4.61
774 902 2.120909 CATGGATCCCGCAACCCAC 61.121 63.158 9.90 0.00 0.00 4.61
775 903 2.275089 CATGGATCCCGCAACCCA 59.725 61.111 9.90 0.00 0.00 4.51
776 904 2.519302 CCATGGATCCCGCAACCC 60.519 66.667 5.56 0.00 0.00 4.11
777 905 2.519302 CCCATGGATCCCGCAACC 60.519 66.667 15.22 0.00 0.00 3.77
778 906 1.823899 GACCCATGGATCCCGCAAC 60.824 63.158 15.22 0.00 0.00 4.17
779 907 2.595095 GACCCATGGATCCCGCAA 59.405 61.111 15.22 0.00 0.00 4.85
780 908 3.488569 GGACCCATGGATCCCGCA 61.489 66.667 15.35 0.00 0.00 5.69
781 909 4.271016 GGGACCCATGGATCCCGC 62.271 72.222 29.75 7.08 45.26 6.13
784 912 4.271016 GGCGGGACCCATGGATCC 62.271 72.222 18.21 18.21 0.00 3.36
785 913 1.488705 TATGGCGGGACCCATGGATC 61.489 60.000 15.22 5.01 45.03 3.36
786 914 0.846427 ATATGGCGGGACCCATGGAT 60.846 55.000 15.22 0.00 45.03 3.41
787 915 0.178888 TATATGGCGGGACCCATGGA 60.179 55.000 15.22 0.00 45.03 3.41
788 916 0.035439 GTATATGGCGGGACCCATGG 60.035 60.000 12.15 4.14 45.03 3.66
789 917 0.984230 AGTATATGGCGGGACCCATG 59.016 55.000 12.15 0.00 45.03 3.66
790 918 2.185387 GTAGTATATGGCGGGACCCAT 58.815 52.381 12.15 0.00 46.90 4.00
791 919 1.148446 AGTAGTATATGGCGGGACCCA 59.852 52.381 12.15 0.00 39.65 4.51
792 920 1.823610 GAGTAGTATATGGCGGGACCC 59.176 57.143 0.00 0.00 37.83 4.46
793 921 2.230750 GTGAGTAGTATATGGCGGGACC 59.769 54.545 0.00 0.00 39.84 4.46
794 922 2.230750 GGTGAGTAGTATATGGCGGGAC 59.769 54.545 0.00 0.00 0.00 4.46
795 923 2.109480 AGGTGAGTAGTATATGGCGGGA 59.891 50.000 0.00 0.00 0.00 5.14
796 924 2.526432 AGGTGAGTAGTATATGGCGGG 58.474 52.381 0.00 0.00 0.00 6.13
797 925 3.861131 GCAAGGTGAGTAGTATATGGCGG 60.861 52.174 0.00 0.00 0.00 6.13
798 926 3.318017 GCAAGGTGAGTAGTATATGGCG 58.682 50.000 0.00 0.00 0.00 5.69
799 927 3.557264 GGGCAAGGTGAGTAGTATATGGC 60.557 52.174 0.00 0.00 0.00 4.40
800 928 3.646162 TGGGCAAGGTGAGTAGTATATGG 59.354 47.826 0.00 0.00 0.00 2.74
801 929 4.955811 TGGGCAAGGTGAGTAGTATATG 57.044 45.455 0.00 0.00 0.00 1.78
802 930 4.287067 CCATGGGCAAGGTGAGTAGTATAT 59.713 45.833 2.85 0.00 0.00 0.86
803 931 3.646162 CCATGGGCAAGGTGAGTAGTATA 59.354 47.826 2.85 0.00 0.00 1.47
804 932 2.439507 CCATGGGCAAGGTGAGTAGTAT 59.560 50.000 2.85 0.00 0.00 2.12
862 990 3.074412 ACTAGTTGGATCAAAACAGCGG 58.926 45.455 11.72 0.00 0.00 5.52
898 1026 7.889600 AGTGCTATCTTCATCTCTGATGATCTA 59.110 37.037 10.52 1.60 42.31 1.98
954 1085 2.017559 GAAGATGGTCGGGTAGCGCT 62.018 60.000 17.26 17.26 0.00 5.92
960 1091 2.526888 TGAGTAGAAGATGGTCGGGT 57.473 50.000 0.00 0.00 0.00 5.28
1009 1143 0.322816 AGCATGCCGGTCTGAATTGT 60.323 50.000 15.66 0.00 0.00 2.71
1012 1146 4.547859 GAGCATGCCGGTCTGAAT 57.452 55.556 15.66 0.00 39.15 2.57
1105 1242 2.061773 CGCGGTCATTATCTGATCCAC 58.938 52.381 0.00 0.00 35.97 4.02
1194 1331 1.068434 GCTAGGTAGAAGCAGAGCTGG 59.932 57.143 0.00 0.00 39.62 4.85
1258 1395 4.630644 ATTCTGGTATGCCGATCTTCAT 57.369 40.909 0.00 0.00 37.67 2.57
1270 1407 4.694339 GCAAACTCGAGGTATTCTGGTAT 58.306 43.478 18.41 0.00 0.00 2.73
1343 1480 6.126409 TGGAAGAAGGACATAAAGTGTTGTT 58.874 36.000 0.00 0.00 42.36 2.83
1349 1486 5.184892 AGCATGGAAGAAGGACATAAAGT 57.815 39.130 0.00 0.00 0.00 2.66
1406 1543 1.066908 CAAAAGAAAGGTTCCGCAGCA 59.933 47.619 0.00 0.00 0.00 4.41
1491 1628 1.686800 GGCCTGGCCCATTTGACAT 60.687 57.895 27.77 0.00 44.06 3.06
1508 1645 3.896888 AGCATCTATCTTGAGGACAGAGG 59.103 47.826 0.00 0.00 0.00 3.69
1546 1683 6.748198 CAGAAGTCGATAAGTTCAACTCCTAC 59.252 42.308 0.00 0.00 39.43 3.18
1552 1689 4.989168 ACACCAGAAGTCGATAAGTTCAAC 59.011 41.667 0.00 0.00 39.43 3.18
1569 1706 5.811399 TTAGTTCAACTTGTTCACACCAG 57.189 39.130 0.00 0.00 0.00 4.00
1570 1707 6.119536 AGATTAGTTCAACTTGTTCACACCA 58.880 36.000 0.00 0.00 0.00 4.17
1661 1799 4.610333 TCTAACAAGCTGAGGGACATAGA 58.390 43.478 0.00 0.00 0.00 1.98
1682 1820 4.202172 GGGCAGGAGAAGTGAAGTATACTC 60.202 50.000 5.70 0.86 0.00 2.59
1693 1831 2.122768 CCAAGATAGGGCAGGAGAAGT 58.877 52.381 0.00 0.00 0.00 3.01
1783 1921 5.373222 ACTGTAACTTACCATTTGAGTGCA 58.627 37.500 0.00 0.00 0.00 4.57
1814 1952 4.783242 ACAAACAAACATGATGTAGACGC 58.217 39.130 0.00 0.00 0.00 5.19
1947 2111 4.333913 AGATGCGCATCTCTCAGTTTAT 57.666 40.909 40.25 19.50 44.37 1.40
2035 2199 8.583296 AGTAACGGACTTACATAAAAGTTCTCT 58.417 33.333 0.00 0.00 39.78 3.10
2068 2232 3.506067 CCAAGATGTGGGTTAACTGGAAC 59.494 47.826 5.42 0.20 44.64 3.62
2198 2365 6.684686 CATCTCAAAAAGGTCAACATGTGAT 58.315 36.000 0.00 0.00 38.90 3.06
2368 2536 7.642186 TGAATGATTTTTGAGGATTCCCTAGA 58.358 34.615 0.00 0.00 44.53 2.43
2406 2575 7.069344 AGTTTTTGGAATGGCCTATATAGCTT 58.931 34.615 3.32 0.00 37.63 3.74
2604 2777 3.381908 CAGCACTATCCTCGGTCTTACTT 59.618 47.826 0.00 0.00 0.00 2.24
2662 2836 6.739112 AGCAACTTCAATTTCAAGTACCTTC 58.261 36.000 0.84 0.00 32.71 3.46
2675 2849 4.083110 CCTTTCATCACGAGCAACTTCAAT 60.083 41.667 0.00 0.00 0.00 2.57
2828 3005 4.759782 TGCTAGCTTCATCTACCAGAAAC 58.240 43.478 17.23 0.00 0.00 2.78
3064 3262 1.741706 TGGGTGTGTTTACGCGAAAAA 59.258 42.857 15.93 10.41 38.20 1.94
3122 3320 4.082408 TGAGTTGACGTTCTATTCGGACAT 60.082 41.667 0.00 0.00 0.00 3.06
3146 3344 8.376942 GTTGTGTACGACAAAATGTTTTTCAAT 58.623 29.630 10.97 0.00 46.30 2.57
3198 3398 2.299013 TGGCTTACCTATATGGCGTCTG 59.701 50.000 0.00 0.00 40.22 3.51
3202 3402 3.270877 GGATTGGCTTACCTATATGGCG 58.729 50.000 0.00 0.00 40.22 5.69
3217 3417 2.624838 CCATGGAAATCGAAGGGATTGG 59.375 50.000 5.56 0.00 44.59 3.16
3227 3427 1.879796 GCCCTAGCTCCATGGAAATCG 60.880 57.143 17.00 5.03 35.50 3.34
3242 3442 0.738975 CGTCTCGACAGATTGCCCTA 59.261 55.000 0.00 0.00 0.00 3.53
3267 3467 5.738783 GCCTCATGGAGTAGTCTTCATTCTC 60.739 48.000 0.00 0.00 37.78 2.87
3276 3476 1.066303 CTCGTGCCTCATGGAGTAGTC 59.934 57.143 0.00 0.00 34.57 2.59
3286 3486 2.052690 GGCTCTACCTCGTGCCTCA 61.053 63.158 0.00 0.00 39.73 3.86
3296 3496 1.249407 CGTCCCAGATAGGCTCTACC 58.751 60.000 0.00 0.00 39.61 3.18
3518 3718 7.075674 ACTGAAAAGAGGCAAATTTGTTTTG 57.924 32.000 19.03 9.31 46.22 2.44
3519 3719 8.785329 TTACTGAAAAGAGGCAAATTTGTTTT 57.215 26.923 19.03 16.10 0.00 2.43
3520 3720 7.011389 GCTTACTGAAAAGAGGCAAATTTGTTT 59.989 33.333 19.03 11.04 0.00 2.83
3521 3721 6.479990 GCTTACTGAAAAGAGGCAAATTTGTT 59.520 34.615 19.03 8.37 0.00 2.83
3522 3722 5.985530 GCTTACTGAAAAGAGGCAAATTTGT 59.014 36.000 19.03 0.26 0.00 2.83
3523 3723 6.218746 AGCTTACTGAAAAGAGGCAAATTTG 58.781 36.000 14.03 14.03 0.00 2.32
3524 3724 6.040842 TGAGCTTACTGAAAAGAGGCAAATTT 59.959 34.615 0.00 0.00 0.00 1.82
3525 3725 5.536161 TGAGCTTACTGAAAAGAGGCAAATT 59.464 36.000 0.00 0.00 0.00 1.82
3526 3726 5.072741 TGAGCTTACTGAAAAGAGGCAAAT 58.927 37.500 0.00 0.00 0.00 2.32
3598 3798 7.882179 ACTGTTTACCACATACTCCATTTTTC 58.118 34.615 0.00 0.00 33.76 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.