AutoCloner

Multiple sequence alignment - TraesCS3D01G024200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G024200	chr3D	100.000	2801	0	0	1	2801	7694140	7696940	0.000000e+00	5173.0
1	TraesCS3D01G024200	chr3D	96.354	576	18	3	2226	2799	99808200	99807626	0.000000e+00	944.0
2	TraesCS3D01G024200	chr3D	83.706	804	74	25	994	1764	7604811	7604032	0.000000e+00	706.0
3	TraesCS3D01G024200	chr3D	91.304	483	32	1	1763	2235	99808902	99808420	0.000000e+00	651.0
4	TraesCS3D01G024200	chr3D	83.740	369	51	5	1211	1570	7601142	7600774	9.610000e-90	340.0
5	TraesCS3D01G024200	chr3A	92.403	1053	46	17	720	1764	12745173	12744147	0.000000e+00	1471.0
6	TraesCS3D01G024200	chr3A	92.165	485	33	4	1754	2233	25007985	25008469	0.000000e+00	680.0
7	TraesCS3D01G024200	chr3A	84.410	712	78	20	1077	1770	12784484	12785180	0.000000e+00	669.0
8	TraesCS3D01G024200	chr3A	82.574	373	48	6	1211	1566	12786307	12786679	2.090000e-81	313.0
9	TraesCS3D01G024200	chr3B	90.397	781	52	11	994	1764	10013932	10014699	0.000000e+00	1005.0
10	TraesCS3D01G024200	chr3B	83.354	823	79	36	983	1776	9931364	9930571	0.000000e+00	708.0
11	TraesCS3D01G024200	chr3B	91.822	269	14	4	652	915	10013636	10013901	4.410000e-98	368.0
12	TraesCS3D01G024200	chr3B	82.703	370	53	7	1211	1570	690442134	690441766	4.500000e-83	318.0
13	TraesCS3D01G024200	chr5D	96.870	575	16	2	2226	2799	409340503	409341076	0.000000e+00	961.0
14	TraesCS3D01G024200	chr5D	95.637	573	23	2	2228	2799	345968724	345968153	0.000000e+00	918.0
15	TraesCS3D01G024200	chr5D	93.210	486	15	6	1766	2235	345969448	345968965	0.000000e+00	699.0
16	TraesCS3D01G024200	chr5D	89.069	494	30	10	1763	2235	249910217	249909727	2.400000e-165	592.0
17	TraesCS3D01G024200	chr5D	89.004	482	29	4	1763	2232	409339784	409340253	2.420000e-160	575.0
18	TraesCS3D01G024200	chr5D	85.976	164	20	3	1761	1921	282487383	282487220	3.710000e-39	172.0
19	TraesCS3D01G024200	chr7D	96.522	575	18	2	2226	2799	194789571	194788998	0.000000e+00	950.0
20	TraesCS3D01G024200	chr7D	91.598	488	22	7	1763	2235	46853885	46854368	0.000000e+00	656.0
21	TraesCS3D01G024200	chr7D	90.400	500	23	6	1761	2235	194790317	194789818	3.940000e-178	634.0
22	TraesCS3D01G024200	chr7D	90.061	493	26	6	1763	2233	576659248	576659739	3.960000e-173	617.0
23	TraesCS3D01G024200	chr7D	89.791	431	27	5	1763	2176	13070608	13070178	1.140000e-148	536.0
24	TraesCS3D01G024200	chr7D	83.727	381	39	11	1212	1570	479598503	479598124	3.460000e-89	339.0
25	TraesCS3D01G024200	chr1D	96.348	575	19	2	2226	2799	54946219	54945646	0.000000e+00	944.0
26	TraesCS3D01G024200	chr1D	92.149	484	25	6	1759	2235	54946943	54946466	0.000000e+00	671.0
27	TraesCS3D01G024200	chr1D	89.524	105	10	1	1761	1864	9310002	9310106	6.300000e-27	132.0
28	TraesCS3D01G024200	chr1D	83.898	118	17	2	1761	1876	464855098	464854981	8.200000e-21	111.0
29	TraesCS3D01G024200	chr2D	95.645	574	23	2	2226	2798	338672304	338671732	0.000000e+00	920.0
30	TraesCS3D01G024200	chr6D	95.478	575	24	2	2226	2799	101226794	101227367	0.000000e+00	917.0
31	TraesCS3D01G024200	chr6D	86.255	502	31	12	1761	2235	101226059	101226549	6.920000e-141	510.0
32	TraesCS3D01G024200	chr6D	85.861	488	39	11	1761	2235	42387017	42386547	2.510000e-135	492.0
33	TraesCS3D01G024200	chr6D	85.276	163	22	2	1761	1922	345786641	345786802	1.730000e-37	167.0
34	TraesCS3D01G024200	chr4D	95.782	569	23	1	2231	2799	77312524	77313091	0.000000e+00	917.0
35	TraesCS3D01G024200	chr4D	94.783	575	27	3	2226	2799	308810780	308811352	0.000000e+00	893.0
36	TraesCS3D01G024200	chr4D	90.964	498	18	7	1763	2235	77311794	77312289	0.000000e+00	645.0
37	TraesCS3D01G024200	chr4D	89.841	502	21	5	1763	2235	308810033	308810533	3.960000e-173	617.0
38	TraesCS3D01G024200	chr4D	83.333	168	25	3	1757	1922	55440436	55440602	4.830000e-33	152.0
39	TraesCS3D01G024200	chr4D	89.524	105	8	3	1761	1864	366315502	366315604	2.260000e-26	130.0
40	TraesCS3D01G024200	chr4D	89.888	89	7	2	1760	1846	409150532	409150444	2.280000e-21	113.0
41	TraesCS3D01G024200	chr4D	81.343	134	22	3	1757	1888	394672288	394672156	3.820000e-19	106.0
42	TraesCS3D01G024200	chr4D	81.148	122	20	3	1754	1873	19205475	19205355	8.260000e-16	95.3
43	TraesCS3D01G024200	chrUn	89.914	466	42	3	1775	2235	90975276	90975741	1.860000e-166	595.0
44	TraesCS3D01G024200	chr4A	88.778	499	29	6	1760	2235	555976004	555976498	1.120000e-163	586.0
45	TraesCS3D01G024200	chr6A	87.751	498	36	7	1758	2235	600310704	600311196	2.440000e-155	558.0
46	TraesCS3D01G024200	chr7B	82.940	381	42	11	1212	1570	505369407	505369028	3.480000e-84	322.0
47	TraesCS3D01G024200	chr7A	82.940	381	40	11	1213	1570	515226751	515227129	1.250000e-83	320.0
48	TraesCS3D01G024200	chr1A	84.848	165	22	3	1761	1922	486575814	486575650	2.230000e-36	163.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G024200	chr3D	7694140	7696940	2800	False	5173.0	5173	100.0000	1	2801	1	chr3D.!!$F1	2800
1	TraesCS3D01G024200	chr3D	99807626	99808902	1276	True	797.5	944	93.8290	1763	2799	2	chr3D.!!$R2	1036
2	TraesCS3D01G024200	chr3D	7600774	7604811	4037	True	523.0	706	83.7230	994	1764	2	chr3D.!!$R1	770
3	TraesCS3D01G024200	chr3A	12744147	12745173	1026	True	1471.0	1471	92.4030	720	1764	1	chr3A.!!$R1	1044
4	TraesCS3D01G024200	chr3A	12784484	12786679	2195	False	491.0	669	83.4920	1077	1770	2	chr3A.!!$F2	693
5	TraesCS3D01G024200	chr3B	9930571	9931364	793	True	708.0	708	83.3540	983	1776	1	chr3B.!!$R1	793
6	TraesCS3D01G024200	chr3B	10013636	10014699	1063	False	686.5	1005	91.1095	652	1764	2	chr3B.!!$F1	1112
7	TraesCS3D01G024200	chr5D	345968153	345969448	1295	True	808.5	918	94.4235	1766	2799	2	chr5D.!!$R3	1033
8	TraesCS3D01G024200	chr5D	409339784	409341076	1292	False	768.0	961	92.9370	1763	2799	2	chr5D.!!$F1	1036
9	TraesCS3D01G024200	chr7D	194788998	194790317	1319	True	792.0	950	93.4610	1761	2799	2	chr7D.!!$R3	1038
10	TraesCS3D01G024200	chr1D	54945646	54946943	1297	True	807.5	944	94.2485	1759	2799	2	chr1D.!!$R2	1040
11	TraesCS3D01G024200	chr2D	338671732	338672304	572	True	920.0	920	95.6450	2226	2798	1	chr2D.!!$R1	572
12	TraesCS3D01G024200	chr6D	101226059	101227367	1308	False	713.5	917	90.8665	1761	2799	2	chr6D.!!$F2	1038
13	TraesCS3D01G024200	chr4D	77311794	77313091	1297	False	781.0	917	93.3730	1763	2799	2	chr4D.!!$F3	1036
14	TraesCS3D01G024200	chr4D	308810033	308811352	1319	False	755.0	893	92.3120	1763	2799	2	chr4D.!!$F4	1036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
952	999	0.032952	TTCACGACCGAAAGACCTGG	59.967	55.0	0.0	0.0	0.0	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1876	1974	1.580815	TTTTTAAACGCGTCCGAGGT	58.419	45.0	14.44	0.0	38.29	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	1.135315	CTTGCTTTGGTCGGATGCG	59.865	57.895	0.00	0.00	0.00	4.73
19	20	2.855728	CTTGCTTTGGTCGGATGCGC	62.856	60.000	0.00	0.00	0.00	6.09
20	21	4.520846	GCTTTGGTCGGATGCGCG	62.521	66.667	0.00	0.00	0.00	6.86
21	22	4.520846	CTTTGGTCGGATGCGCGC	62.521	66.667	27.26	27.26	0.00	6.86
29	30	3.344215	GGATGCGCGCCAGATGAG	61.344	66.667	30.77	0.00	0.00	2.90
30	31	2.587194	GATGCGCGCCAGATGAGT	60.587	61.111	30.77	3.76	0.00	3.41
31	32	2.124983	ATGCGCGCCAGATGAGTT	60.125	55.556	30.77	0.00	0.00	3.01
32	33	2.098842	GATGCGCGCCAGATGAGTTC	62.099	60.000	30.77	7.42	0.00	3.01
33	34	3.918220	GCGCGCCAGATGAGTTCG	61.918	66.667	23.24	0.00	0.00	3.95
34	35	2.507102	CGCGCCAGATGAGTTCGT	60.507	61.111	0.00	0.00	0.00	3.85
35	36	2.792290	CGCGCCAGATGAGTTCGTG	61.792	63.158	0.00	0.00	0.00	4.35
36	37	3.084579	CGCCAGATGAGTTCGTGC	58.915	61.111	0.00	0.00	0.00	5.34
37	38	2.792290	CGCCAGATGAGTTCGTGCG	61.792	63.158	0.00	0.00	40.82	5.34
38	39	1.738099	GCCAGATGAGTTCGTGCGT	60.738	57.895	0.00	0.00	0.00	5.24
39	40	1.959899	GCCAGATGAGTTCGTGCGTG	61.960	60.000	0.00	0.00	0.00	5.34
40	41	0.667487	CCAGATGAGTTCGTGCGTGT	60.667	55.000	0.00	0.00	0.00	4.49
41	42	1.139989	CAGATGAGTTCGTGCGTGTT	58.860	50.000	0.00	0.00	0.00	3.32
42	43	1.526887	CAGATGAGTTCGTGCGTGTTT	59.473	47.619	0.00	0.00	0.00	2.83
43	44	2.729360	CAGATGAGTTCGTGCGTGTTTA	59.271	45.455	0.00	0.00	0.00	2.01
44	45	3.367932	CAGATGAGTTCGTGCGTGTTTAT	59.632	43.478	0.00	0.00	0.00	1.40
45	46	3.994392	AGATGAGTTCGTGCGTGTTTATT	59.006	39.130	0.00	0.00	0.00	1.40
46	47	4.451096	AGATGAGTTCGTGCGTGTTTATTT	59.549	37.500	0.00	0.00	0.00	1.40
47	48	4.123276	TGAGTTCGTGCGTGTTTATTTC	57.877	40.909	0.00	0.00	0.00	2.17
48	49	3.805422	TGAGTTCGTGCGTGTTTATTTCT	59.195	39.130	0.00	0.00	0.00	2.52
49	50	4.084745	TGAGTTCGTGCGTGTTTATTTCTC	60.085	41.667	0.00	0.00	0.00	2.87
50	51	4.056050	AGTTCGTGCGTGTTTATTTCTCT	58.944	39.130	0.00	0.00	0.00	3.10
51	52	4.084537	AGTTCGTGCGTGTTTATTTCTCTG	60.085	41.667	0.00	0.00	0.00	3.35
52	53	2.156891	TCGTGCGTGTTTATTTCTCTGC	59.843	45.455	0.00	0.00	0.00	4.26
53	54	2.096466	CGTGCGTGTTTATTTCTCTGCA	60.096	45.455	0.00	0.00	0.00	4.41
54	55	3.424829	CGTGCGTGTTTATTTCTCTGCAT	60.425	43.478	0.00	0.00	33.25	3.96
55	56	3.848019	GTGCGTGTTTATTTCTCTGCATG	59.152	43.478	0.00	0.00	33.25	4.06
56	57	3.501828	TGCGTGTTTATTTCTCTGCATGT	59.498	39.130	0.00	0.00	0.00	3.21
57	58	4.023279	TGCGTGTTTATTTCTCTGCATGTT	60.023	37.500	0.00	0.00	0.00	2.71
58	59	4.321745	GCGTGTTTATTTCTCTGCATGTTG	59.678	41.667	0.00	0.00	0.00	3.33
59	60	4.853196	CGTGTTTATTTCTCTGCATGTTGG	59.147	41.667	0.00	0.00	0.00	3.77
60	61	5.163513	GTGTTTATTTCTCTGCATGTTGGG	58.836	41.667	0.00	0.00	0.00	4.12
61	62	4.832266	TGTTTATTTCTCTGCATGTTGGGT	59.168	37.500	0.00	0.00	0.00	4.51
62	63	5.304101	TGTTTATTTCTCTGCATGTTGGGTT	59.696	36.000	0.00	0.00	0.00	4.11
63	64	6.183360	TGTTTATTTCTCTGCATGTTGGGTTT	60.183	34.615	0.00	0.00	0.00	3.27
64	65	3.731652	TTTCTCTGCATGTTGGGTTTG	57.268	42.857	0.00	0.00	0.00	2.93
65	66	2.655090	TCTCTGCATGTTGGGTTTGA	57.345	45.000	0.00	0.00	0.00	2.69
66	67	3.159213	TCTCTGCATGTTGGGTTTGAT	57.841	42.857	0.00	0.00	0.00	2.57
67	68	2.821378	TCTCTGCATGTTGGGTTTGATG	59.179	45.455	0.00	0.00	0.00	3.07
68	69	1.894466	TCTGCATGTTGGGTTTGATGG	59.106	47.619	0.00	0.00	0.00	3.51
69	70	1.894466	CTGCATGTTGGGTTTGATGGA	59.106	47.619	0.00	0.00	0.00	3.41
70	71	1.894466	TGCATGTTGGGTTTGATGGAG	59.106	47.619	0.00	0.00	0.00	3.86
71	72	1.205417	GCATGTTGGGTTTGATGGAGG	59.795	52.381	0.00	0.00	0.00	4.30
72	73	1.826720	CATGTTGGGTTTGATGGAGGG	59.173	52.381	0.00	0.00	0.00	4.30
73	74	1.153539	TGTTGGGTTTGATGGAGGGA	58.846	50.000	0.00	0.00	0.00	4.20
74	75	1.501170	TGTTGGGTTTGATGGAGGGAA	59.499	47.619	0.00	0.00	0.00	3.97
75	76	1.893137	GTTGGGTTTGATGGAGGGAAC	59.107	52.381	0.00	0.00	0.00	3.62
87	88	4.309950	GGGAACCGTGGAGTGCGT	62.310	66.667	0.00	0.00	40.86	5.24
88	89	2.280592	GGAACCGTGGAGTGCGTT	60.281	61.111	0.00	0.00	0.00	4.84
89	90	2.315386	GGAACCGTGGAGTGCGTTC	61.315	63.158	0.00	0.00	0.00	3.95
90	91	2.654912	GAACCGTGGAGTGCGTTCG	61.655	63.158	0.00	0.00	0.00	3.95
91	92	3.435030	AACCGTGGAGTGCGTTCGT	62.435	57.895	0.00	0.00	0.00	3.85
92	93	3.103911	CCGTGGAGTGCGTTCGTC	61.104	66.667	0.00	0.00	0.00	4.20
93	94	3.458579	CGTGGAGTGCGTTCGTCG	61.459	66.667	0.00	0.00	43.12	5.12
94	95	3.103911	GTGGAGTGCGTTCGTCGG	61.104	66.667	0.00	0.00	40.26	4.79
95	96	3.598715	TGGAGTGCGTTCGTCGGT	61.599	61.111	0.00	0.00	40.26	4.69
96	97	2.355481	GGAGTGCGTTCGTCGGTT	60.355	61.111	0.00	0.00	40.26	4.44
97	98	2.654912	GGAGTGCGTTCGTCGGTTG	61.655	63.158	0.00	0.00	40.26	3.77
98	99	2.654912	GAGTGCGTTCGTCGGTTGG	61.655	63.158	0.00	0.00	40.26	3.77
99	100	2.963320	GTGCGTTCGTCGGTTGGT	60.963	61.111	0.00	0.00	40.26	3.67
100	101	2.202905	TGCGTTCGTCGGTTGGTT	60.203	55.556	0.00	0.00	40.26	3.67
101	102	1.814586	TGCGTTCGTCGGTTGGTTT	60.815	52.632	0.00	0.00	40.26	3.27
102	103	0.529337	TGCGTTCGTCGGTTGGTTTA	60.529	50.000	0.00	0.00	40.26	2.01
103	104	0.792031	GCGTTCGTCGGTTGGTTTAT	59.208	50.000	0.00	0.00	40.26	1.40
104	105	1.195222	GCGTTCGTCGGTTGGTTTATT	59.805	47.619	0.00	0.00	40.26	1.40
105	106	2.411409	GCGTTCGTCGGTTGGTTTATTA	59.589	45.455	0.00	0.00	40.26	0.98
106	107	3.120718	GCGTTCGTCGGTTGGTTTATTAA	60.121	43.478	0.00	0.00	40.26	1.40
107	108	4.610231	GCGTTCGTCGGTTGGTTTATTAAA	60.610	41.667	0.00	0.00	40.26	1.52
108	109	4.840239	CGTTCGTCGGTTGGTTTATTAAAC	59.160	41.667	10.26	10.26	36.97	2.01
109	110	5.333263	CGTTCGTCGGTTGGTTTATTAAACT	60.333	40.000	16.64	0.00	37.43	2.66
110	111	6.429624	GTTCGTCGGTTGGTTTATTAAACTT	58.570	36.000	16.64	0.00	41.14	2.66
111	112	6.226988	TCGTCGGTTGGTTTATTAAACTTC	57.773	37.500	16.64	8.85	41.14	3.01
112	113	5.757320	TCGTCGGTTGGTTTATTAAACTTCA	59.243	36.000	16.64	6.68	41.14	3.02
113	114	6.259608	TCGTCGGTTGGTTTATTAAACTTCAA	59.740	34.615	16.64	11.36	41.14	2.69
114	115	6.911511	CGTCGGTTGGTTTATTAAACTTCAAA	59.088	34.615	16.64	6.32	41.14	2.69
115	116	7.096925	CGTCGGTTGGTTTATTAAACTTCAAAC	60.097	37.037	16.64	14.36	41.14	2.93
116	117	7.916977	GTCGGTTGGTTTATTAAACTTCAAACT	59.083	33.333	16.64	0.00	41.14	2.66
117	118	8.468399	TCGGTTGGTTTATTAAACTTCAAACTT	58.532	29.630	16.64	0.00	41.14	2.66
118	119	8.748582	CGGTTGGTTTATTAAACTTCAAACTTC	58.251	33.333	16.64	4.58	41.14	3.01
119	120	9.589111	GGTTGGTTTATTAAACTTCAAACTTCA	57.411	29.630	16.64	3.11	41.14	3.02
148	149	7.895759	TCTTTTGATATGGAAAAACCTTGAGG	58.104	34.615	0.00	0.00	39.86	3.86
168	169	5.549742	AGGTGATTCCTTTTGCAAATTGA	57.450	34.783	13.65	9.73	45.67	2.57
169	170	5.927819	AGGTGATTCCTTTTGCAAATTGAA	58.072	33.333	13.65	17.58	45.67	2.69
170	171	5.759763	AGGTGATTCCTTTTGCAAATTGAAC	59.240	36.000	19.95	15.43	45.67	3.18
171	172	5.526846	GGTGATTCCTTTTGCAAATTGAACA	59.473	36.000	19.95	17.01	0.00	3.18
172	173	6.205270	GGTGATTCCTTTTGCAAATTGAACAT	59.795	34.615	19.95	10.04	0.00	2.71
173	174	7.387397	GGTGATTCCTTTTGCAAATTGAACATA	59.613	33.333	19.95	10.64	0.00	2.29
174	175	8.938906	GTGATTCCTTTTGCAAATTGAACATAT	58.061	29.630	19.95	9.24	0.00	1.78
175	176	9.153721	TGATTCCTTTTGCAAATTGAACATATC	57.846	29.630	19.95	15.41	0.00	1.63
176	177	9.153721	GATTCCTTTTGCAAATTGAACATATCA	57.846	29.630	19.95	3.70	35.85	2.15
191	192	9.577110	TTGAACATATCAAAATCTGCATTCTTC	57.423	29.630	0.00	0.00	44.94	2.87
192	193	8.741841	TGAACATATCAAAATCTGCATTCTTCA	58.258	29.630	0.00	0.00	34.30	3.02
193	194	9.745880	GAACATATCAAAATCTGCATTCTTCAT	57.254	29.630	0.00	0.00	0.00	2.57
194	195	9.529325	AACATATCAAAATCTGCATTCTTCATG	57.471	29.630	0.00	0.00	35.73	3.07
195	196	8.692710	ACATATCAAAATCTGCATTCTTCATGT	58.307	29.630	0.00	0.00	34.98	3.21
254	255	9.476202	AATCAAACTAAAATGTTAACTTGAGCC	57.524	29.630	7.22	0.00	29.79	4.70
255	256	8.232913	TCAAACTAAAATGTTAACTTGAGCCT	57.767	30.769	7.22	0.00	0.00	4.58
256	257	8.691797	TCAAACTAAAATGTTAACTTGAGCCTT	58.308	29.630	7.22	0.00	0.00	4.35
257	258	9.959749	CAAACTAAAATGTTAACTTGAGCCTTA	57.040	29.630	7.22	0.00	0.00	2.69
263	264	7.396540	AATGTTAACTTGAGCCTTATTCTGG	57.603	36.000	7.22	0.00	0.00	3.86
275	276	6.734104	GCCTTATTCTGGCTATATCTTGTG	57.266	41.667	0.00	0.00	46.38	3.33
276	277	6.467677	GCCTTATTCTGGCTATATCTTGTGA	58.532	40.000	0.00	0.00	46.38	3.58
277	278	7.108847	GCCTTATTCTGGCTATATCTTGTGAT	58.891	38.462	0.00	0.00	46.38	3.06
278	279	7.279758	GCCTTATTCTGGCTATATCTTGTGATC	59.720	40.741	0.00	0.00	46.38	2.92
279	280	7.768120	CCTTATTCTGGCTATATCTTGTGATCC	59.232	40.741	0.00	0.00	34.32	3.36
280	281	6.692849	ATTCTGGCTATATCTTGTGATCCA	57.307	37.500	0.00	0.00	34.32	3.41
281	282	6.692849	TTCTGGCTATATCTTGTGATCCAT	57.307	37.500	0.00	0.00	34.32	3.41
282	283	6.046290	TCTGGCTATATCTTGTGATCCATG	57.954	41.667	0.00	0.00	34.32	3.66
283	284	5.545335	TCTGGCTATATCTTGTGATCCATGT	59.455	40.000	0.00	0.00	34.32	3.21
284	285	6.043590	TCTGGCTATATCTTGTGATCCATGTT	59.956	38.462	0.00	0.00	34.32	2.71
285	286	7.235399	TCTGGCTATATCTTGTGATCCATGTTA	59.765	37.037	0.00	0.00	34.32	2.41
286	287	7.921304	TGGCTATATCTTGTGATCCATGTTAT	58.079	34.615	0.00	0.00	34.32	1.89
287	288	9.045745	TGGCTATATCTTGTGATCCATGTTATA	57.954	33.333	0.00	0.70	34.32	0.98
295	296	9.330063	TCTTGTGATCCATGTTATATCTGAAAC	57.670	33.333	0.00	0.00	0.00	2.78
296	297	8.450578	TTGTGATCCATGTTATATCTGAAACC	57.549	34.615	0.00	0.00	0.00	3.27
297	298	7.805163	TGTGATCCATGTTATATCTGAAACCT	58.195	34.615	0.00	0.00	0.00	3.50
298	299	8.933653	TGTGATCCATGTTATATCTGAAACCTA	58.066	33.333	0.00	0.00	0.00	3.08
299	300	9.950496	GTGATCCATGTTATATCTGAAACCTAT	57.050	33.333	0.00	0.00	0.00	2.57
314	315	9.859427	TCTGAAACCTATTCTTTTTGCATATTG	57.141	29.630	0.00	0.00	0.00	1.90
315	316	9.859427	CTGAAACCTATTCTTTTTGCATATTGA	57.141	29.630	0.00	0.00	0.00	2.57
316	317	9.859427	TGAAACCTATTCTTTTTGCATATTGAG	57.141	29.630	0.00	0.00	0.00	3.02
317	318	9.860898	GAAACCTATTCTTTTTGCATATTGAGT	57.139	29.630	0.00	0.00	0.00	3.41
318	319	9.860898	AAACCTATTCTTTTTGCATATTGAGTC	57.139	29.630	0.00	0.00	0.00	3.36
319	320	7.697691	ACCTATTCTTTTTGCATATTGAGTCG	58.302	34.615	0.00	0.00	0.00	4.18
320	321	7.336931	ACCTATTCTTTTTGCATATTGAGTCGT	59.663	33.333	0.00	0.00	0.00	4.34
321	322	8.184192	CCTATTCTTTTTGCATATTGAGTCGTT	58.816	33.333	0.00	0.00	0.00	3.85
322	323	9.214953	CTATTCTTTTTGCATATTGAGTCGTTC	57.785	33.333	0.00	0.00	0.00	3.95
323	324	6.552859	TCTTTTTGCATATTGAGTCGTTCA	57.447	33.333	0.00	0.00	0.00	3.18
335	336	6.671614	TTGAGTCGTTCAACACATACTTTT	57.328	33.333	1.86	0.00	40.82	2.27
336	337	6.671614	TGAGTCGTTCAACACATACTTTTT	57.328	33.333	0.00	0.00	31.34	1.94
364	365	9.520515	AGAGCTTTAAGATTAGGTTTGAATGAA	57.479	29.630	0.00	0.00	0.00	2.57
427	428	9.958180	TTAAATGACTTCCACTCATATCTTTCA	57.042	29.630	0.00	0.00	0.00	2.69
428	429	8.868522	AAATGACTTCCACTCATATCTTTCAA	57.131	30.769	0.00	0.00	0.00	2.69
429	430	8.868522	AATGACTTCCACTCATATCTTTCAAA	57.131	30.769	0.00	0.00	0.00	2.69
430	431	7.912056	TGACTTCCACTCATATCTTTCAAAG	57.088	36.000	0.00	0.00	0.00	2.77
431	432	7.453393	TGACTTCCACTCATATCTTTCAAAGT	58.547	34.615	0.00	0.00	0.00	2.66
432	433	8.593679	TGACTTCCACTCATATCTTTCAAAGTA	58.406	33.333	0.00	0.00	0.00	2.24
433	434	9.436957	GACTTCCACTCATATCTTTCAAAGTAA	57.563	33.333	0.00	0.00	0.00	2.24
434	435	9.793259	ACTTCCACTCATATCTTTCAAAGTAAA	57.207	29.630	0.00	0.00	0.00	2.01
477	478	9.838339	ACTTAATATCGAATGAAGATTGTTCCT	57.162	29.630	10.09	0.00	0.00	3.36
480	481	7.897575	ATATCGAATGAAGATTGTTCCTAGC	57.102	36.000	0.00	0.00	0.00	3.42
481	482	5.084818	TCGAATGAAGATTGTTCCTAGCA	57.915	39.130	0.00	0.00	0.00	3.49
482	483	5.487433	TCGAATGAAGATTGTTCCTAGCAA	58.513	37.500	0.00	0.00	0.00	3.91
483	484	5.937540	TCGAATGAAGATTGTTCCTAGCAAA	59.062	36.000	0.00	0.00	0.00	3.68
484	485	6.092670	TCGAATGAAGATTGTTCCTAGCAAAG	59.907	38.462	0.00	0.00	0.00	2.77
485	486	6.128172	CGAATGAAGATTGTTCCTAGCAAAGT	60.128	38.462	0.00	0.00	0.00	2.66
486	487	7.530426	AATGAAGATTGTTCCTAGCAAAGTT	57.470	32.000	0.00	0.00	0.00	2.66
487	488	6.959639	TGAAGATTGTTCCTAGCAAAGTTT	57.040	33.333	0.00	0.00	0.00	2.66
488	489	6.738114	TGAAGATTGTTCCTAGCAAAGTTTG	58.262	36.000	11.41	11.41	0.00	2.93
489	490	6.321181	TGAAGATTGTTCCTAGCAAAGTTTGT	59.679	34.615	16.70	6.68	0.00	2.83
490	491	7.500892	TGAAGATTGTTCCTAGCAAAGTTTGTA	59.499	33.333	16.70	7.41	0.00	2.41
491	492	7.440523	AGATTGTTCCTAGCAAAGTTTGTAG	57.559	36.000	16.70	14.93	0.00	2.74
492	493	5.432885	TTGTTCCTAGCAAAGTTTGTAGC	57.567	39.130	16.70	2.98	0.00	3.58
493	494	4.714632	TGTTCCTAGCAAAGTTTGTAGCT	58.285	39.130	16.70	10.32	40.92	3.32
494	495	5.130350	TGTTCCTAGCAAAGTTTGTAGCTT	58.870	37.500	16.70	1.69	38.47	3.74
495	496	6.292923	TGTTCCTAGCAAAGTTTGTAGCTTA	58.707	36.000	16.70	2.65	38.47	3.09
496	497	6.940298	TGTTCCTAGCAAAGTTTGTAGCTTAT	59.060	34.615	16.70	0.00	38.47	1.73
497	498	6.985188	TCCTAGCAAAGTTTGTAGCTTATG	57.015	37.500	16.70	5.29	38.47	1.90
498	499	6.472887	TCCTAGCAAAGTTTGTAGCTTATGT	58.527	36.000	16.70	0.00	38.47	2.29
499	500	6.940298	TCCTAGCAAAGTTTGTAGCTTATGTT	59.060	34.615	16.70	0.00	38.47	2.71
500	501	7.447238	TCCTAGCAAAGTTTGTAGCTTATGTTT	59.553	33.333	16.70	0.00	38.47	2.83
501	502	7.538678	CCTAGCAAAGTTTGTAGCTTATGTTTG	59.461	37.037	16.70	0.00	38.47	2.93
502	503	6.215845	AGCAAAGTTTGTAGCTTATGTTTGG	58.784	36.000	16.70	0.00	32.52	3.28
503	504	5.983118	GCAAAGTTTGTAGCTTATGTTTGGT	59.017	36.000	16.70	0.00	0.00	3.67
504	505	6.478673	GCAAAGTTTGTAGCTTATGTTTGGTT	59.521	34.615	16.70	0.00	0.00	3.67
505	506	7.516627	GCAAAGTTTGTAGCTTATGTTTGGTTG	60.517	37.037	16.70	0.00	0.00	3.77
506	507	6.709018	AGTTTGTAGCTTATGTTTGGTTGT	57.291	33.333	0.00	0.00	0.00	3.32
507	508	7.107639	AGTTTGTAGCTTATGTTTGGTTGTT	57.892	32.000	0.00	0.00	0.00	2.83
508	509	6.978080	AGTTTGTAGCTTATGTTTGGTTGTTG	59.022	34.615	0.00	0.00	0.00	3.33
509	510	6.458232	TTGTAGCTTATGTTTGGTTGTTGT	57.542	33.333	0.00	0.00	0.00	3.32
510	511	6.458232	TGTAGCTTATGTTTGGTTGTTGTT	57.542	33.333	0.00	0.00	0.00	2.83
511	512	6.868622	TGTAGCTTATGTTTGGTTGTTGTTT	58.131	32.000	0.00	0.00	0.00	2.83
512	513	7.324178	TGTAGCTTATGTTTGGTTGTTGTTTT	58.676	30.769	0.00	0.00	0.00	2.43
513	514	6.902224	AGCTTATGTTTGGTTGTTGTTTTC	57.098	33.333	0.00	0.00	0.00	2.29
514	515	6.402222	AGCTTATGTTTGGTTGTTGTTTTCA	58.598	32.000	0.00	0.00	0.00	2.69
515	516	7.047271	AGCTTATGTTTGGTTGTTGTTTTCAT	58.953	30.769	0.00	0.00	0.00	2.57
516	517	7.011295	AGCTTATGTTTGGTTGTTGTTTTCATG	59.989	33.333	0.00	0.00	0.00	3.07
517	518	7.201600	GCTTATGTTTGGTTGTTGTTTTCATGT	60.202	33.333	0.00	0.00	0.00	3.21
518	519	8.553459	TTATGTTTGGTTGTTGTTTTCATGTT	57.447	26.923	0.00	0.00	0.00	2.71
519	520	6.233430	TGTTTGGTTGTTGTTTTCATGTTG	57.767	33.333	0.00	0.00	0.00	3.33
520	521	4.935885	TTGGTTGTTGTTTTCATGTTGC	57.064	36.364	0.00	0.00	0.00	4.17
521	522	4.199432	TGGTTGTTGTTTTCATGTTGCT	57.801	36.364	0.00	0.00	0.00	3.91
522	523	4.573900	TGGTTGTTGTTTTCATGTTGCTT	58.426	34.783	0.00	0.00	0.00	3.91
523	524	5.724328	TGGTTGTTGTTTTCATGTTGCTTA	58.276	33.333	0.00	0.00	0.00	3.09
524	525	6.344500	TGGTTGTTGTTTTCATGTTGCTTAT	58.656	32.000	0.00	0.00	0.00	1.73
525	526	6.478344	TGGTTGTTGTTTTCATGTTGCTTATC	59.522	34.615	0.00	0.00	0.00	1.75
526	527	6.073819	GGTTGTTGTTTTCATGTTGCTTATCC	60.074	38.462	0.00	0.00	0.00	2.59
527	528	6.403866	TGTTGTTTTCATGTTGCTTATCCT	57.596	33.333	0.00	0.00	0.00	3.24
528	529	6.215121	TGTTGTTTTCATGTTGCTTATCCTG	58.785	36.000	0.00	0.00	0.00	3.86
529	530	5.389859	TGTTTTCATGTTGCTTATCCTGG	57.610	39.130	0.00	0.00	0.00	4.45
530	531	4.832266	TGTTTTCATGTTGCTTATCCTGGT	59.168	37.500	0.00	0.00	0.00	4.00
531	532	5.304101	TGTTTTCATGTTGCTTATCCTGGTT	59.696	36.000	0.00	0.00	0.00	3.67
532	533	6.183360	TGTTTTCATGTTGCTTATCCTGGTTT	60.183	34.615	0.00	0.00	0.00	3.27
533	534	5.643379	TTCATGTTGCTTATCCTGGTTTC	57.357	39.130	0.00	0.00	0.00	2.78
534	535	3.689161	TCATGTTGCTTATCCTGGTTTCG	59.311	43.478	0.00	0.00	0.00	3.46
535	536	1.810151	TGTTGCTTATCCTGGTTTCGC	59.190	47.619	0.00	0.00	0.00	4.70
536	537	1.132453	GTTGCTTATCCTGGTTTCGCC	59.868	52.381	0.00	0.00	37.90	5.54
537	538	0.742990	TGCTTATCCTGGTTTCGCCG	60.743	55.000	0.00	0.00	41.21	6.46
538	539	0.743345	GCTTATCCTGGTTTCGCCGT	60.743	55.000	0.00	0.00	41.21	5.68
539	540	1.287425	CTTATCCTGGTTTCGCCGTC	58.713	55.000	0.00	0.00	41.21	4.79
540	541	0.899720	TTATCCTGGTTTCGCCGTCT	59.100	50.000	0.00	0.00	41.21	4.18
541	542	0.458669	TATCCTGGTTTCGCCGTCTC	59.541	55.000	0.00	0.00	41.21	3.36
542	543	2.240162	ATCCTGGTTTCGCCGTCTCC	62.240	60.000	0.00	0.00	41.21	3.71
543	544	2.342279	CTGGTTTCGCCGTCTCCA	59.658	61.111	0.00	0.00	41.21	3.86
544	545	2.027625	CTGGTTTCGCCGTCTCCAC	61.028	63.158	0.00	0.00	41.21	4.02
545	546	2.741211	GGTTTCGCCGTCTCCACC	60.741	66.667	0.00	0.00	0.00	4.61
546	547	2.342648	GTTTCGCCGTCTCCACCT	59.657	61.111	0.00	0.00	0.00	4.00
547	548	1.737008	GTTTCGCCGTCTCCACCTC	60.737	63.158	0.00	0.00	0.00	3.85
548	549	2.204461	TTTCGCCGTCTCCACCTCA	61.204	57.895	0.00	0.00	0.00	3.86
549	550	1.750341	TTTCGCCGTCTCCACCTCAA	61.750	55.000	0.00	0.00	0.00	3.02
550	551	2.430382	TTCGCCGTCTCCACCTCAAC	62.430	60.000	0.00	0.00	0.00	3.18
551	552	2.932234	CGCCGTCTCCACCTCAACT	61.932	63.158	0.00	0.00	0.00	3.16
552	553	1.374758	GCCGTCTCCACCTCAACTG	60.375	63.158	0.00	0.00	0.00	3.16
553	554	1.293498	CCGTCTCCACCTCAACTGG	59.707	63.158	0.00	0.00	0.00	4.00
554	555	1.185618	CCGTCTCCACCTCAACTGGA	61.186	60.000	0.00	0.00	36.34	3.86
555	556	0.898320	CGTCTCCACCTCAACTGGAT	59.102	55.000	0.00	0.00	37.18	3.41
556	557	1.134965	CGTCTCCACCTCAACTGGATC	60.135	57.143	0.00	0.00	37.18	3.36
557	558	1.134965	GTCTCCACCTCAACTGGATCG	60.135	57.143	0.00	0.00	37.18	3.69
558	559	0.898320	CTCCACCTCAACTGGATCGT	59.102	55.000	0.00	0.00	37.18	3.73
559	560	0.895530	TCCACCTCAACTGGATCGTC	59.104	55.000	0.00	0.00	32.52	4.20
560	561	0.898320	CCACCTCAACTGGATCGTCT	59.102	55.000	0.00	0.00	0.00	4.18
561	562	1.276421	CCACCTCAACTGGATCGTCTT	59.724	52.381	0.00	0.00	0.00	3.01
562	563	2.611518	CACCTCAACTGGATCGTCTTC	58.388	52.381	0.00	0.00	0.00	2.87
563	564	1.550976	ACCTCAACTGGATCGTCTTCC	59.449	52.381	0.00	0.00	36.24	3.46
564	565	1.550524	CCTCAACTGGATCGTCTTCCA	59.449	52.381	4.81	4.81	43.56	3.53
565	566	2.611518	CTCAACTGGATCGTCTTCCAC	58.388	52.381	1.25	0.00	40.90	4.02
566	567	1.275291	TCAACTGGATCGTCTTCCACC	59.725	52.381	1.25	0.00	40.90	4.61
567	568	1.276421	CAACTGGATCGTCTTCCACCT	59.724	52.381	1.25	0.00	40.90	4.00
568	569	1.187087	ACTGGATCGTCTTCCACCTC	58.813	55.000	1.25	0.00	40.90	3.85
569	570	1.272760	ACTGGATCGTCTTCCACCTCT	60.273	52.381	1.25	0.00	40.90	3.69
570	571	1.135915	CTGGATCGTCTTCCACCTCTG	59.864	57.143	1.25	0.00	40.90	3.35
571	572	0.179097	GGATCGTCTTCCACCTCTGC	60.179	60.000	0.00	0.00	35.72	4.26
572	573	0.179097	GATCGTCTTCCACCTCTGCC	60.179	60.000	0.00	0.00	0.00	4.85
573	574	1.617947	ATCGTCTTCCACCTCTGCCC	61.618	60.000	0.00	0.00	0.00	5.36
574	575	2.583441	CGTCTTCCACCTCTGCCCA	61.583	63.158	0.00	0.00	0.00	5.36
575	576	1.298014	GTCTTCCACCTCTGCCCAG	59.702	63.158	0.00	0.00	0.00	4.45
576	577	2.045536	CTTCCACCTCTGCCCAGC	60.046	66.667	0.00	0.00	0.00	4.85
577	578	2.853542	TTCCACCTCTGCCCAGCA	60.854	61.111	0.00	0.00	36.92	4.41
578	579	3.196207	TTCCACCTCTGCCCAGCAC	62.196	63.158	0.00	0.00	33.79	4.40
579	580	3.957586	CCACCTCTGCCCAGCACA	61.958	66.667	0.00	0.00	33.79	4.57
580	581	2.113774	CACCTCTGCCCAGCACAA	59.886	61.111	0.00	0.00	33.79	3.33
581	582	1.970114	CACCTCTGCCCAGCACAAG	60.970	63.158	0.00	0.00	33.79	3.16
582	583	2.360852	CCTCTGCCCAGCACAAGG	60.361	66.667	0.00	0.28	33.79	3.61
583	584	2.752358	CTCTGCCCAGCACAAGGA	59.248	61.111	0.00	0.00	33.79	3.36
584	585	1.376942	CTCTGCCCAGCACAAGGAG	60.377	63.158	0.00	0.00	33.79	3.69
585	586	2.121992	CTCTGCCCAGCACAAGGAGT	62.122	60.000	0.00	0.00	33.79	3.85
586	587	1.673665	CTGCCCAGCACAAGGAGTC	60.674	63.158	0.00	0.00	33.79	3.36
587	588	2.121992	CTGCCCAGCACAAGGAGTCT	62.122	60.000	0.00	0.00	33.79	3.24
588	589	1.376553	GCCCAGCACAAGGAGTCTC	60.377	63.158	0.00	0.00	0.00	3.36
589	590	1.298014	CCCAGCACAAGGAGTCTCC	59.702	63.158	11.31	11.31	36.58	3.71
602	603	3.467374	GAGTCTCCTCCCATTCATCAC	57.533	52.381	0.00	0.00	0.00	3.06
603	604	1.759445	AGTCTCCTCCCATTCATCACG	59.241	52.381	0.00	0.00	0.00	4.35
604	605	0.465705	TCTCCTCCCATTCATCACGC	59.534	55.000	0.00	0.00	0.00	5.34
605	606	0.178767	CTCCTCCCATTCATCACGCA	59.821	55.000	0.00	0.00	0.00	5.24
606	607	0.617935	TCCTCCCATTCATCACGCAA	59.382	50.000	0.00	0.00	0.00	4.85
607	608	0.734889	CCTCCCATTCATCACGCAAC	59.265	55.000	0.00	0.00	0.00	4.17
608	609	0.734889	CTCCCATTCATCACGCAACC	59.265	55.000	0.00	0.00	0.00	3.77
609	610	0.037447	TCCCATTCATCACGCAACCA	59.963	50.000	0.00	0.00	0.00	3.67
610	611	0.887247	CCCATTCATCACGCAACCAA	59.113	50.000	0.00	0.00	0.00	3.67
611	612	1.135315	CCCATTCATCACGCAACCAAG	60.135	52.381	0.00	0.00	0.00	3.61
612	613	1.541147	CCATTCATCACGCAACCAAGT	59.459	47.619	0.00	0.00	0.00	3.16
613	614	2.414559	CCATTCATCACGCAACCAAGTC	60.415	50.000	0.00	0.00	0.00	3.01
614	615	1.960417	TTCATCACGCAACCAAGTCA	58.040	45.000	0.00	0.00	0.00	3.41
615	616	1.960417	TCATCACGCAACCAAGTCAA	58.040	45.000	0.00	0.00	0.00	3.18
616	617	2.293170	TCATCACGCAACCAAGTCAAA	58.707	42.857	0.00	0.00	0.00	2.69
617	618	2.290367	TCATCACGCAACCAAGTCAAAG	59.710	45.455	0.00	0.00	0.00	2.77
618	619	2.031258	TCACGCAACCAAGTCAAAGA	57.969	45.000	0.00	0.00	0.00	2.52
619	620	2.360844	TCACGCAACCAAGTCAAAGAA	58.639	42.857	0.00	0.00	0.00	2.52
620	621	2.750166	TCACGCAACCAAGTCAAAGAAA	59.250	40.909	0.00	0.00	0.00	2.52
621	622	3.191581	TCACGCAACCAAGTCAAAGAAAA	59.808	39.130	0.00	0.00	0.00	2.29
622	623	3.303229	CACGCAACCAAGTCAAAGAAAAC	59.697	43.478	0.00	0.00	0.00	2.43
623	624	2.529894	CGCAACCAAGTCAAAGAAAACG	59.470	45.455	0.00	0.00	0.00	3.60
624	625	2.857748	GCAACCAAGTCAAAGAAAACGG	59.142	45.455	0.00	0.00	0.00	4.44
625	626	3.443976	CAACCAAGTCAAAGAAAACGGG	58.556	45.455	0.00	0.00	0.00	5.28
626	627	3.007473	ACCAAGTCAAAGAAAACGGGA	57.993	42.857	0.00	0.00	0.00	5.14
627	628	2.686405	ACCAAGTCAAAGAAAACGGGAC	59.314	45.455	0.00	0.00	0.00	4.46
640	641	2.045143	GGGACGACGAGGACCTCT	60.045	66.667	19.39	6.55	0.00	3.69
641	642	2.114051	GGGACGACGAGGACCTCTC	61.114	68.421	19.39	13.81	39.10	3.20
642	643	1.376942	GGACGACGAGGACCTCTCA	60.377	63.158	19.39	0.00	42.55	3.27
643	644	1.646624	GGACGACGAGGACCTCTCAC	61.647	65.000	19.39	9.19	42.55	3.51
644	645	0.954449	GACGACGAGGACCTCTCACA	60.954	60.000	19.39	0.00	42.55	3.58
645	646	0.536687	ACGACGAGGACCTCTCACAA	60.537	55.000	19.39	0.00	42.55	3.33
646	647	0.169230	CGACGAGGACCTCTCACAAG	59.831	60.000	19.39	5.18	42.55	3.16
647	648	0.528470	GACGAGGACCTCTCACAAGG	59.472	60.000	19.39	4.46	42.55	3.61
648	649	0.900647	ACGAGGACCTCTCACAAGGG	60.901	60.000	19.39	3.74	42.55	3.95
649	650	0.900647	CGAGGACCTCTCACAAGGGT	60.901	60.000	19.39	0.00	42.55	4.34
650	651	0.899019	GAGGACCTCTCACAAGGGTC	59.101	60.000	14.72	0.00	46.14	4.46
689	694	4.783621	TCTGCGGCATGCTCCACC	62.784	66.667	18.92	0.00	46.63	4.61
700	705	2.755469	CTCCACCCATTTGGCCCG	60.755	66.667	0.00	0.00	37.83	6.13
704	709	1.682005	CACCCATTTGGCCCGTCAT	60.682	57.895	0.00	0.00	37.83	3.06
742	747	2.202492	GACTCGTCGTCATGCGCT	60.202	61.111	9.73	0.00	42.37	5.92
915	931	1.043816	CTCACTCACCACTCACCACT	58.956	55.000	0.00	0.00	0.00	4.00
916	932	1.000283	CTCACTCACCACTCACCACTC	60.000	57.143	0.00	0.00	0.00	3.51
917	933	0.752658	CACTCACCACTCACCACTCA	59.247	55.000	0.00	0.00	0.00	3.41
918	934	0.753262	ACTCACCACTCACCACTCAC	59.247	55.000	0.00	0.00	0.00	3.51
919	935	0.752658	CTCACCACTCACCACTCACA	59.247	55.000	0.00	0.00	0.00	3.58
920	936	0.464036	TCACCACTCACCACTCACAC	59.536	55.000	0.00	0.00	0.00	3.82
921	937	0.875908	CACCACTCACCACTCACACG	60.876	60.000	0.00	0.00	0.00	4.49
922	938	1.300931	CCACTCACCACTCACACGG	60.301	63.158	0.00	0.00	0.00	4.94
923	939	1.739667	CACTCACCACTCACACGGA	59.260	57.895	0.00	0.00	0.00	4.69
950	997	3.947910	TTATTCACGACCGAAAGACCT	57.052	42.857	0.00	0.00	0.00	3.85
951	998	2.080286	ATTCACGACCGAAAGACCTG	57.920	50.000	0.00	0.00	0.00	4.00
952	999	0.032952	TTCACGACCGAAAGACCTGG	59.967	55.000	0.00	0.00	0.00	4.45
953	1000	1.111116	TCACGACCGAAAGACCTGGT	61.111	55.000	0.00	0.00	39.12	4.00
954	1001	0.599558	CACGACCGAAAGACCTGGTA	59.400	55.000	0.00	0.00	35.75	3.25
955	1002	0.886563	ACGACCGAAAGACCTGGTAG	59.113	55.000	0.00	0.00	35.75	3.18
956	1003	0.458025	CGACCGAAAGACCTGGTAGC	60.458	60.000	0.00	0.00	35.75	3.58
957	1004	0.896226	GACCGAAAGACCTGGTAGCT	59.104	55.000	0.00	0.00	35.75	3.32
958	1005	0.608640	ACCGAAAGACCTGGTAGCTG	59.391	55.000	0.00	0.00	33.25	4.24
959	1006	0.108138	CCGAAAGACCTGGTAGCTGG	60.108	60.000	15.56	15.56	0.00	4.85
960	1007	0.608640	CGAAAGACCTGGTAGCTGGT	59.391	55.000	21.85	21.85	39.60	4.00
961	1008	1.822990	CGAAAGACCTGGTAGCTGGTA	59.177	52.381	21.74	0.00	36.59	3.25
962	1009	2.159226	CGAAAGACCTGGTAGCTGGTAG	60.159	54.545	21.74	8.84	36.59	3.18
963	1010	2.625282	AAGACCTGGTAGCTGGTAGT	57.375	50.000	21.74	10.76	36.59	2.73
964	1011	3.752359	AAGACCTGGTAGCTGGTAGTA	57.248	47.619	21.74	0.00	36.59	1.82
965	1012	3.015675	AGACCTGGTAGCTGGTAGTAC	57.984	52.381	21.74	10.64	36.59	2.73
966	1013	2.310945	AGACCTGGTAGCTGGTAGTACA	59.689	50.000	21.74	0.00	36.59	2.90
967	1014	3.094572	GACCTGGTAGCTGGTAGTACAA	58.905	50.000	21.74	0.00	36.59	2.41
968	1015	2.830321	ACCTGGTAGCTGGTAGTACAAC	59.170	50.000	20.56	0.00	34.36	3.32
969	1016	2.829720	CCTGGTAGCTGGTAGTACAACA	59.170	50.000	9.54	0.00	0.00	3.33
970	1017	3.259876	CCTGGTAGCTGGTAGTACAACAA	59.740	47.826	9.54	0.00	0.00	2.83
971	1018	4.495422	CTGGTAGCTGGTAGTACAACAAG	58.505	47.826	0.00	0.00	0.00	3.16
972	1019	4.154176	TGGTAGCTGGTAGTACAACAAGA	58.846	43.478	0.00	0.00	0.00	3.02
973	1020	4.021719	TGGTAGCTGGTAGTACAACAAGAC	60.022	45.833	0.00	0.00	0.00	3.01
974	1021	4.021719	GGTAGCTGGTAGTACAACAAGACA	60.022	45.833	0.00	0.00	0.00	3.41
975	1022	3.991367	AGCTGGTAGTACAACAAGACAC	58.009	45.455	2.06	0.00	0.00	3.67
976	1023	3.064931	GCTGGTAGTACAACAAGACACC	58.935	50.000	2.06	0.00	0.00	4.16
977	1024	3.314553	CTGGTAGTACAACAAGACACCG	58.685	50.000	2.06	0.00	0.00	4.94
978	1025	2.957680	TGGTAGTACAACAAGACACCGA	59.042	45.455	2.06	0.00	0.00	4.69
979	1026	3.243501	TGGTAGTACAACAAGACACCGAC	60.244	47.826	2.06	0.00	0.00	4.79
980	1027	3.243501	GGTAGTACAACAAGACACCGACA	60.244	47.826	2.06	0.00	0.00	4.35
981	1028	2.817901	AGTACAACAAGACACCGACAC	58.182	47.619	0.00	0.00	0.00	3.67
1074	1122	3.567797	GGCGCTGCGTTCATCTCC	61.568	66.667	24.04	10.31	0.00	3.71
1098	1146	2.225467	GCCATATTCCTGCTGTTCCTC	58.775	52.381	0.00	0.00	0.00	3.71
1142	1190	1.275291	CCTCCGCCACTCTTACTTCAA	59.725	52.381	0.00	0.00	0.00	2.69
1810	1905	3.573491	GCGCCTAAAATCGCCGCT	61.573	61.111	0.00	0.00	45.01	5.52
1940	2080	9.512435	GTTCGGCATATATTACATAATAGTCGT	57.488	33.333	0.00	0.00	32.24	4.34
2141	2311	1.506718	GTCGCTGTCCTCGATGACA	59.493	57.895	20.29	20.29	42.75	3.58
2749	6105	3.037549	CTGGAATAGGAGCCAAGACTCT	58.962	50.000	0.00	0.00	36.87	3.24
2799	6156	3.532155	GACCGCCGCCTCATCTCT	61.532	66.667	0.00	0.00	0.00	3.10
2800	6157	3.781770	GACCGCCGCCTCATCTCTG	62.782	68.421	0.00	0.00	0.00	3.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.135315	CGCATCCGACCAAAGCAAG	59.865	57.895	0.00	0.00	36.29	4.01
1	2	2.976840	GCGCATCCGACCAAAGCAA	61.977	57.895	0.30	0.00	36.29	3.91
2	3	3.430862	GCGCATCCGACCAAAGCA	61.431	61.111	0.30	0.00	36.29	3.91
4	5	4.520846	GCGCGCATCCGACCAAAG	62.521	66.667	29.10	0.00	36.29	2.77
12	13	3.344215	CTCATCTGGCGCGCATCC	61.344	66.667	34.42	16.64	0.00	3.51
13	14	2.098842	GAACTCATCTGGCGCGCATC	62.099	60.000	34.42	17.47	0.00	3.91
14	15	2.124983	AACTCATCTGGCGCGCAT	60.125	55.556	34.42	15.69	0.00	4.73
15	16	2.815211	GAACTCATCTGGCGCGCA	60.815	61.111	34.42	17.93	0.00	6.09
16	17	3.918220	CGAACTCATCTGGCGCGC	61.918	66.667	25.94	25.94	0.00	6.86
17	18	2.507102	ACGAACTCATCTGGCGCG	60.507	61.111	0.00	0.00	0.00	6.86
18	19	3.084579	CACGAACTCATCTGGCGC	58.915	61.111	0.00	0.00	0.00	6.53
19	20	2.792290	CGCACGAACTCATCTGGCG	61.792	63.158	0.00	0.00	40.25	5.69
20	21	1.738099	ACGCACGAACTCATCTGGC	60.738	57.895	0.00	0.00	0.00	4.85
21	22	0.667487	ACACGCACGAACTCATCTGG	60.667	55.000	0.00	0.00	0.00	3.86
22	23	1.139989	AACACGCACGAACTCATCTG	58.860	50.000	0.00	0.00	0.00	2.90
23	24	1.865865	AAACACGCACGAACTCATCT	58.134	45.000	0.00	0.00	0.00	2.90
24	25	3.991605	ATAAACACGCACGAACTCATC	57.008	42.857	0.00	0.00	0.00	2.92
25	26	4.451096	AGAAATAAACACGCACGAACTCAT	59.549	37.500	0.00	0.00	0.00	2.90
26	27	3.805422	AGAAATAAACACGCACGAACTCA	59.195	39.130	0.00	0.00	0.00	3.41
27	28	4.150098	AGAGAAATAAACACGCACGAACTC	59.850	41.667	0.00	0.00	0.00	3.01
28	29	4.056050	AGAGAAATAAACACGCACGAACT	58.944	39.130	0.00	0.00	0.00	3.01
29	30	4.141680	CAGAGAAATAAACACGCACGAAC	58.858	43.478	0.00	0.00	0.00	3.95
30	31	3.363575	GCAGAGAAATAAACACGCACGAA	60.364	43.478	0.00	0.00	0.00	3.85
31	32	2.156891	GCAGAGAAATAAACACGCACGA	59.843	45.455	0.00	0.00	0.00	4.35
32	33	2.096466	TGCAGAGAAATAAACACGCACG	60.096	45.455	0.00	0.00	0.00	5.34
33	34	3.536158	TGCAGAGAAATAAACACGCAC	57.464	42.857	0.00	0.00	0.00	5.34
34	35	3.501828	ACATGCAGAGAAATAAACACGCA	59.498	39.130	0.00	0.00	0.00	5.24
35	36	4.083581	ACATGCAGAGAAATAAACACGC	57.916	40.909	0.00	0.00	0.00	5.34
36	37	4.853196	CCAACATGCAGAGAAATAAACACG	59.147	41.667	0.00	0.00	0.00	4.49
37	38	5.163513	CCCAACATGCAGAGAAATAAACAC	58.836	41.667	0.00	0.00	0.00	3.32
38	39	4.832266	ACCCAACATGCAGAGAAATAAACA	59.168	37.500	0.00	0.00	0.00	2.83
39	40	5.391312	ACCCAACATGCAGAGAAATAAAC	57.609	39.130	0.00	0.00	0.00	2.01
40	41	6.041409	TCAAACCCAACATGCAGAGAAATAAA	59.959	34.615	0.00	0.00	0.00	1.40
41	42	5.538053	TCAAACCCAACATGCAGAGAAATAA	59.462	36.000	0.00	0.00	0.00	1.40
42	43	5.076182	TCAAACCCAACATGCAGAGAAATA	58.924	37.500	0.00	0.00	0.00	1.40
43	44	3.896888	TCAAACCCAACATGCAGAGAAAT	59.103	39.130	0.00	0.00	0.00	2.17
44	45	3.295093	TCAAACCCAACATGCAGAGAAA	58.705	40.909	0.00	0.00	0.00	2.52
45	46	2.942804	TCAAACCCAACATGCAGAGAA	58.057	42.857	0.00	0.00	0.00	2.87
46	47	2.655090	TCAAACCCAACATGCAGAGA	57.345	45.000	0.00	0.00	0.00	3.10
47	48	2.094390	CCATCAAACCCAACATGCAGAG	60.094	50.000	0.00	0.00	0.00	3.35
48	49	1.894466	CCATCAAACCCAACATGCAGA	59.106	47.619	0.00	0.00	0.00	4.26
49	50	1.894466	TCCATCAAACCCAACATGCAG	59.106	47.619	0.00	0.00	0.00	4.41
50	51	1.894466	CTCCATCAAACCCAACATGCA	59.106	47.619	0.00	0.00	0.00	3.96
51	52	1.205417	CCTCCATCAAACCCAACATGC	59.795	52.381	0.00	0.00	0.00	4.06
52	53	1.826720	CCCTCCATCAAACCCAACATG	59.173	52.381	0.00	0.00	0.00	3.21
53	54	1.715931	TCCCTCCATCAAACCCAACAT	59.284	47.619	0.00	0.00	0.00	2.71
54	55	1.153539	TCCCTCCATCAAACCCAACA	58.846	50.000	0.00	0.00	0.00	3.33
55	56	1.893137	GTTCCCTCCATCAAACCCAAC	59.107	52.381	0.00	0.00	0.00	3.77
56	57	1.203125	GGTTCCCTCCATCAAACCCAA	60.203	52.381	0.00	0.00	36.06	4.12
57	58	0.407918	GGTTCCCTCCATCAAACCCA	59.592	55.000	0.00	0.00	36.06	4.51
58	59	0.679960	CGGTTCCCTCCATCAAACCC	60.680	60.000	0.00	0.00	38.32	4.11
59	60	0.037734	ACGGTTCCCTCCATCAAACC	59.962	55.000	0.00	0.00	38.22	3.27
60	61	1.165270	CACGGTTCCCTCCATCAAAC	58.835	55.000	0.00	0.00	0.00	2.93
61	62	0.037590	CCACGGTTCCCTCCATCAAA	59.962	55.000	0.00	0.00	0.00	2.69
62	63	0.838554	TCCACGGTTCCCTCCATCAA	60.839	55.000	0.00	0.00	0.00	2.57
63	64	1.229368	TCCACGGTTCCCTCCATCA	60.229	57.895	0.00	0.00	0.00	3.07
64	65	1.265454	ACTCCACGGTTCCCTCCATC	61.265	60.000	0.00	0.00	0.00	3.51
65	66	1.229529	ACTCCACGGTTCCCTCCAT	60.230	57.895	0.00	0.00	0.00	3.41
66	67	2.203182	ACTCCACGGTTCCCTCCA	59.797	61.111	0.00	0.00	0.00	3.86
67	68	2.663196	CACTCCACGGTTCCCTCC	59.337	66.667	0.00	0.00	0.00	4.30
68	69	2.047179	GCACTCCACGGTTCCCTC	60.047	66.667	0.00	0.00	0.00	4.30
69	70	4.003788	CGCACTCCACGGTTCCCT	62.004	66.667	0.00	0.00	0.00	4.20
70	71	3.819877	AACGCACTCCACGGTTCCC	62.820	63.158	0.00	0.00	34.00	3.97
71	72	2.280592	AACGCACTCCACGGTTCC	60.281	61.111	0.00	0.00	34.00	3.62
72	73	2.654912	CGAACGCACTCCACGGTTC	61.655	63.158	0.00	0.00	34.00	3.62
73	74	2.660552	CGAACGCACTCCACGGTT	60.661	61.111	0.00	0.00	34.00	4.44
74	75	3.836176	GACGAACGCACTCCACGGT	62.836	63.158	0.00	0.00	34.00	4.83
75	76	3.103911	GACGAACGCACTCCACGG	61.104	66.667	0.00	0.00	34.00	4.94
76	77	3.458579	CGACGAACGCACTCCACG	61.459	66.667	0.00	0.00	34.51	4.94
77	78	3.103911	CCGACGAACGCACTCCAC	61.104	66.667	0.00	0.00	41.07	4.02
78	79	3.141522	AACCGACGAACGCACTCCA	62.142	57.895	0.00	0.00	41.07	3.86
79	80	2.355481	AACCGACGAACGCACTCC	60.355	61.111	0.00	0.00	41.07	3.85
80	81	2.654912	CCAACCGACGAACGCACTC	61.655	63.158	0.00	0.00	41.07	3.51
81	82	2.660552	CCAACCGACGAACGCACT	60.661	61.111	0.00	0.00	41.07	4.40
82	83	2.039062	AAACCAACCGACGAACGCAC	62.039	55.000	0.00	0.00	41.07	5.34
83	84	0.529337	TAAACCAACCGACGAACGCA	60.529	50.000	0.00	0.00	41.07	5.24
84	85	0.792031	ATAAACCAACCGACGAACGC	59.208	50.000	0.00	0.00	41.07	4.84
85	86	4.644044	TTAATAAACCAACCGACGAACG	57.356	40.909	0.00	0.00	42.18	3.95
86	87	5.989249	AGTTTAATAAACCAACCGACGAAC	58.011	37.500	11.83	0.00	42.34	3.95
87	88	6.259608	TGAAGTTTAATAAACCAACCGACGAA	59.740	34.615	11.83	0.00	42.34	3.85
88	89	5.757320	TGAAGTTTAATAAACCAACCGACGA	59.243	36.000	11.83	0.00	42.34	4.20
89	90	5.988092	TGAAGTTTAATAAACCAACCGACG	58.012	37.500	11.83	0.00	42.34	5.12
90	91	7.916977	AGTTTGAAGTTTAATAAACCAACCGAC	59.083	33.333	11.83	6.29	42.34	4.79
91	92	7.998580	AGTTTGAAGTTTAATAAACCAACCGA	58.001	30.769	11.83	0.00	42.34	4.69
92	93	8.637281	AAGTTTGAAGTTTAATAAACCAACCG	57.363	30.769	11.83	0.00	42.34	4.44
93	94	9.589111	TGAAGTTTGAAGTTTAATAAACCAACC	57.411	29.630	11.83	3.92	42.34	3.77
122	123	8.534496	CCTCAAGGTTTTTCCATATCAAAAGAT	58.466	33.333	0.00	0.00	39.02	2.40
123	124	7.895759	CCTCAAGGTTTTTCCATATCAAAAGA	58.104	34.615	0.00	0.00	39.02	2.52
147	148	5.526846	TGTTCAATTTGCAAAAGGAATCACC	59.473	36.000	23.32	14.92	39.35	4.02
148	149	6.601741	TGTTCAATTTGCAAAAGGAATCAC	57.398	33.333	23.32	15.80	0.00	3.06
149	150	9.153721	GATATGTTCAATTTGCAAAAGGAATCA	57.846	29.630	23.32	21.52	0.00	2.57
150	151	9.153721	TGATATGTTCAATTTGCAAAAGGAATC	57.846	29.630	23.32	18.50	0.00	2.52
151	152	9.504708	TTGATATGTTCAATTTGCAAAAGGAAT	57.495	25.926	23.32	15.10	39.44	3.01
152	153	8.899427	TTGATATGTTCAATTTGCAAAAGGAA	57.101	26.923	17.19	18.41	39.44	3.36
153	154	8.899427	TTTGATATGTTCAATTTGCAAAAGGA	57.101	26.923	17.19	13.52	43.73	3.36
158	159	8.444715	GCAGATTTTGATATGTTCAATTTGCAA	58.555	29.630	0.00	0.00	43.73	4.08
159	160	7.603024	TGCAGATTTTGATATGTTCAATTTGCA	59.397	29.630	4.75	4.75	43.73	4.08
160	161	7.966111	TGCAGATTTTGATATGTTCAATTTGC	58.034	30.769	0.00	0.00	43.73	3.68
165	166	9.577110	GAAGAATGCAGATTTTGATATGTTCAA	57.423	29.630	0.00	0.00	42.62	2.69
166	167	8.741841	TGAAGAATGCAGATTTTGATATGTTCA	58.258	29.630	0.00	0.00	0.00	3.18
167	168	9.745880	ATGAAGAATGCAGATTTTGATATGTTC	57.254	29.630	0.00	0.00	0.00	3.18
168	169	9.529325	CATGAAGAATGCAGATTTTGATATGTT	57.471	29.630	0.00	0.00	0.00	2.71
169	170	8.692710	ACATGAAGAATGCAGATTTTGATATGT	58.307	29.630	0.00	0.00	40.22	2.29
228	229	9.476202	GGCTCAAGTTAACATTTTAGTTTGATT	57.524	29.630	8.61	0.00	33.07	2.57
229	230	8.860088	AGGCTCAAGTTAACATTTTAGTTTGAT	58.140	29.630	8.61	0.00	33.07	2.57
230	231	8.232913	AGGCTCAAGTTAACATTTTAGTTTGA	57.767	30.769	8.61	5.55	33.07	2.69
231	232	8.871686	AAGGCTCAAGTTAACATTTTAGTTTG	57.128	30.769	8.61	1.22	33.07	2.93
237	238	8.306761	CCAGAATAAGGCTCAAGTTAACATTTT	58.693	33.333	8.61	0.00	0.00	1.82
238	239	7.830739	CCAGAATAAGGCTCAAGTTAACATTT	58.169	34.615	8.61	0.00	0.00	2.32
239	240	7.396540	CCAGAATAAGGCTCAAGTTAACATT	57.603	36.000	8.61	0.00	0.00	2.71
252	253	7.108847	ATCACAAGATATAGCCAGAATAAGGC	58.891	38.462	0.00	0.00	41.85	4.35
253	254	7.768120	GGATCACAAGATATAGCCAGAATAAGG	59.232	40.741	0.00	0.00	33.72	2.69
254	255	8.316946	TGGATCACAAGATATAGCCAGAATAAG	58.683	37.037	0.00	0.00	33.72	1.73
255	256	8.206126	TGGATCACAAGATATAGCCAGAATAA	57.794	34.615	0.00	0.00	33.72	1.40
256	257	7.797121	TGGATCACAAGATATAGCCAGAATA	57.203	36.000	0.00	0.00	33.72	1.75
257	258	6.692849	TGGATCACAAGATATAGCCAGAAT	57.307	37.500	0.00	0.00	33.72	2.40
258	259	6.043590	ACATGGATCACAAGATATAGCCAGAA	59.956	38.462	0.00	0.00	33.72	3.02
259	260	5.545335	ACATGGATCACAAGATATAGCCAGA	59.455	40.000	0.00	0.00	33.72	3.86
260	261	5.802465	ACATGGATCACAAGATATAGCCAG	58.198	41.667	0.00	0.00	33.72	4.85
261	262	5.830799	ACATGGATCACAAGATATAGCCA	57.169	39.130	0.00	0.00	33.72	4.75
269	270	9.330063	GTTTCAGATATAACATGGATCACAAGA	57.670	33.333	0.00	0.00	0.00	3.02
270	271	8.562892	GGTTTCAGATATAACATGGATCACAAG	58.437	37.037	0.00	0.00	0.00	3.16
271	272	8.274322	AGGTTTCAGATATAACATGGATCACAA	58.726	33.333	0.00	0.00	0.00	3.33
272	273	7.805163	AGGTTTCAGATATAACATGGATCACA	58.195	34.615	0.00	0.00	0.00	3.58
273	274	9.950496	ATAGGTTTCAGATATAACATGGATCAC	57.050	33.333	0.00	0.00	0.00	3.06
288	289	9.859427	CAATATGCAAAAAGAATAGGTTTCAGA	57.141	29.630	0.00	0.00	0.00	3.27
289	290	9.859427	TCAATATGCAAAAAGAATAGGTTTCAG	57.141	29.630	0.00	0.00	0.00	3.02
290	291	9.859427	CTCAATATGCAAAAAGAATAGGTTTCA	57.141	29.630	0.00	0.00	0.00	2.69
291	292	9.860898	ACTCAATATGCAAAAAGAATAGGTTTC	57.139	29.630	0.00	0.00	0.00	2.78
292	293	9.860898	GACTCAATATGCAAAAAGAATAGGTTT	57.139	29.630	0.00	0.00	0.00	3.27
293	294	8.184192	CGACTCAATATGCAAAAAGAATAGGTT	58.816	33.333	0.00	0.00	0.00	3.50
294	295	7.336931	ACGACTCAATATGCAAAAAGAATAGGT	59.663	33.333	0.00	0.00	0.00	3.08
295	296	7.697691	ACGACTCAATATGCAAAAAGAATAGG	58.302	34.615	0.00	0.00	0.00	2.57
296	297	9.214953	GAACGACTCAATATGCAAAAAGAATAG	57.785	33.333	0.00	0.00	0.00	1.73
297	298	8.726068	TGAACGACTCAATATGCAAAAAGAATA	58.274	29.630	0.00	0.00	0.00	1.75
298	299	7.592938	TGAACGACTCAATATGCAAAAAGAAT	58.407	30.769	0.00	0.00	0.00	2.40
299	300	6.964908	TGAACGACTCAATATGCAAAAAGAA	58.035	32.000	0.00	0.00	0.00	2.52
300	301	6.552859	TGAACGACTCAATATGCAAAAAGA	57.447	33.333	0.00	0.00	0.00	2.52
301	302	6.636447	TGTTGAACGACTCAATATGCAAAAAG	59.364	34.615	7.73	0.00	45.74	2.27
302	303	6.416455	GTGTTGAACGACTCAATATGCAAAAA	59.584	34.615	7.73	0.00	45.74	1.94
303	304	5.912396	GTGTTGAACGACTCAATATGCAAAA	59.088	36.000	7.73	0.00	45.74	2.44
304	305	5.008118	TGTGTTGAACGACTCAATATGCAAA	59.992	36.000	7.73	0.00	45.74	3.68
305	306	4.513318	TGTGTTGAACGACTCAATATGCAA	59.487	37.500	7.73	0.00	45.74	4.08
306	307	4.061596	TGTGTTGAACGACTCAATATGCA	58.938	39.130	7.73	0.00	45.74	3.96
307	308	4.661993	TGTGTTGAACGACTCAATATGC	57.338	40.909	7.73	0.00	45.74	3.14
308	309	7.525688	AGTATGTGTTGAACGACTCAATATG	57.474	36.000	7.73	0.00	45.74	1.78
309	310	8.547967	AAAGTATGTGTTGAACGACTCAATAT	57.452	30.769	7.73	6.40	45.74	1.28
310	311	7.956420	AAAGTATGTGTTGAACGACTCAATA	57.044	32.000	7.73	3.41	45.74	1.90
311	312	6.861065	AAAGTATGTGTTGAACGACTCAAT	57.139	33.333	7.73	0.00	45.74	2.57
312	313	6.671614	AAAAGTATGTGTTGAACGACTCAA	57.328	33.333	0.00	0.00	41.93	3.02
313	314	6.671614	AAAAAGTATGTGTTGAACGACTCA	57.328	33.333	0.00	0.00	29.63	3.41
338	339	9.520515	TTCATTCAAACCTAATCTTAAAGCTCT	57.479	29.630	0.00	0.00	0.00	4.09
407	408	7.913674	ACTTTGAAAGATATGAGTGGAAGTC	57.086	36.000	12.53	0.00	36.61	3.01
408	409	9.793259	TTTACTTTGAAAGATATGAGTGGAAGT	57.207	29.630	12.53	0.00	0.00	3.01
451	452	9.838339	AGGAACAATCTTCATTCGATATTAAGT	57.162	29.630	0.00	0.00	0.00	2.24
454	455	9.424319	GCTAGGAACAATCTTCATTCGATATTA	57.576	33.333	0.00	0.00	0.00	0.98
455	456	7.933577	TGCTAGGAACAATCTTCATTCGATATT	59.066	33.333	0.00	0.00	0.00	1.28
456	457	7.445121	TGCTAGGAACAATCTTCATTCGATAT	58.555	34.615	0.00	0.00	0.00	1.63
457	458	6.816136	TGCTAGGAACAATCTTCATTCGATA	58.184	36.000	0.00	0.00	0.00	2.92
458	459	5.674525	TGCTAGGAACAATCTTCATTCGAT	58.325	37.500	0.00	0.00	0.00	3.59
459	460	5.084818	TGCTAGGAACAATCTTCATTCGA	57.915	39.130	0.00	0.00	0.00	3.71
460	461	5.801350	TTGCTAGGAACAATCTTCATTCG	57.199	39.130	0.00	0.00	0.00	3.34
461	462	7.150783	ACTTTGCTAGGAACAATCTTCATTC	57.849	36.000	0.00	0.00	0.00	2.67
462	463	7.530426	AACTTTGCTAGGAACAATCTTCATT	57.470	32.000	0.00	0.00	0.00	2.57
463	464	7.014615	ACAAACTTTGCTAGGAACAATCTTCAT	59.985	33.333	0.00	0.00	0.00	2.57
464	465	6.321181	ACAAACTTTGCTAGGAACAATCTTCA	59.679	34.615	0.00	0.00	0.00	3.02
465	466	6.739112	ACAAACTTTGCTAGGAACAATCTTC	58.261	36.000	0.00	0.00	0.00	2.87
466	467	6.715347	ACAAACTTTGCTAGGAACAATCTT	57.285	33.333	0.00	0.00	0.00	2.40
467	468	6.072452	GCTACAAACTTTGCTAGGAACAATCT	60.072	38.462	0.00	0.00	0.00	2.40
468	469	6.072452	AGCTACAAACTTTGCTAGGAACAATC	60.072	38.462	0.00	0.00	33.64	2.67
469	470	5.770162	AGCTACAAACTTTGCTAGGAACAAT	59.230	36.000	0.00	0.00	33.64	2.71
470	471	5.130350	AGCTACAAACTTTGCTAGGAACAA	58.870	37.500	0.00	0.00	33.64	2.83
471	472	4.714632	AGCTACAAACTTTGCTAGGAACA	58.285	39.130	0.00	0.00	33.64	3.18
472	473	5.690997	AAGCTACAAACTTTGCTAGGAAC	57.309	39.130	0.00	0.00	35.09	3.62
473	474	6.940298	ACATAAGCTACAAACTTTGCTAGGAA	59.060	34.615	1.14	0.00	35.09	3.36
474	475	6.472887	ACATAAGCTACAAACTTTGCTAGGA	58.527	36.000	1.14	0.00	35.09	2.94
475	476	6.743575	ACATAAGCTACAAACTTTGCTAGG	57.256	37.500	1.14	0.00	35.09	3.02
476	477	7.538678	CCAAACATAAGCTACAAACTTTGCTAG	59.461	37.037	1.14	4.63	35.09	3.42
477	478	7.013846	ACCAAACATAAGCTACAAACTTTGCTA	59.986	33.333	1.14	0.00	35.09	3.49
478	479	6.183360	ACCAAACATAAGCTACAAACTTTGCT	60.183	34.615	1.14	0.00	37.37	3.91
479	480	5.983118	ACCAAACATAAGCTACAAACTTTGC	59.017	36.000	1.14	0.00	0.00	3.68
480	481	7.491048	ACAACCAAACATAAGCTACAAACTTTG	59.509	33.333	0.00	0.00	0.00	2.77
481	482	7.552459	ACAACCAAACATAAGCTACAAACTTT	58.448	30.769	0.00	0.00	0.00	2.66
482	483	7.107639	ACAACCAAACATAAGCTACAAACTT	57.892	32.000	0.00	0.00	0.00	2.66
483	484	6.709018	ACAACCAAACATAAGCTACAAACT	57.291	33.333	0.00	0.00	0.00	2.66
484	485	6.754675	ACAACAACCAAACATAAGCTACAAAC	59.245	34.615	0.00	0.00	0.00	2.93
485	486	6.868622	ACAACAACCAAACATAAGCTACAAA	58.131	32.000	0.00	0.00	0.00	2.83
486	487	6.458232	ACAACAACCAAACATAAGCTACAA	57.542	33.333	0.00	0.00	0.00	2.41
487	488	6.458232	AACAACAACCAAACATAAGCTACA	57.542	33.333	0.00	0.00	0.00	2.74
488	489	7.489757	TGAAAACAACAACCAAACATAAGCTAC	59.510	33.333	0.00	0.00	0.00	3.58
489	490	7.548097	TGAAAACAACAACCAAACATAAGCTA	58.452	30.769	0.00	0.00	0.00	3.32
490	491	6.402222	TGAAAACAACAACCAAACATAAGCT	58.598	32.000	0.00	0.00	0.00	3.74
491	492	6.654793	TGAAAACAACAACCAAACATAAGC	57.345	33.333	0.00	0.00	0.00	3.09
492	493	8.195617	ACATGAAAACAACAACCAAACATAAG	57.804	30.769	0.00	0.00	0.00	1.73
493	494	8.446273	CAACATGAAAACAACAACCAAACATAA	58.554	29.630	0.00	0.00	0.00	1.90
494	495	7.413438	GCAACATGAAAACAACAACCAAACATA	60.413	33.333	0.00	0.00	0.00	2.29
495	496	6.622462	GCAACATGAAAACAACAACCAAACAT	60.622	34.615	0.00	0.00	0.00	2.71
496	497	5.334414	GCAACATGAAAACAACAACCAAACA	60.334	36.000	0.00	0.00	0.00	2.83
497	498	5.085390	GCAACATGAAAACAACAACCAAAC	58.915	37.500	0.00	0.00	0.00	2.93
498	499	4.999950	AGCAACATGAAAACAACAACCAAA	59.000	33.333	0.00	0.00	0.00	3.28
499	500	4.573900	AGCAACATGAAAACAACAACCAA	58.426	34.783	0.00	0.00	0.00	3.67
500	501	4.199432	AGCAACATGAAAACAACAACCA	57.801	36.364	0.00	0.00	0.00	3.67
501	502	6.073819	GGATAAGCAACATGAAAACAACAACC	60.074	38.462	0.00	0.00	0.00	3.77
502	503	6.701400	AGGATAAGCAACATGAAAACAACAAC	59.299	34.615	0.00	0.00	0.00	3.32
503	504	6.700960	CAGGATAAGCAACATGAAAACAACAA	59.299	34.615	0.00	0.00	0.00	2.83
504	505	6.215121	CAGGATAAGCAACATGAAAACAACA	58.785	36.000	0.00	0.00	0.00	3.33
505	506	5.634859	CCAGGATAAGCAACATGAAAACAAC	59.365	40.000	0.00	0.00	0.00	3.32
506	507	5.304101	ACCAGGATAAGCAACATGAAAACAA	59.696	36.000	0.00	0.00	0.00	2.83
507	508	4.832266	ACCAGGATAAGCAACATGAAAACA	59.168	37.500	0.00	0.00	0.00	2.83
508	509	5.391312	ACCAGGATAAGCAACATGAAAAC	57.609	39.130	0.00	0.00	0.00	2.43
509	510	6.418057	AAACCAGGATAAGCAACATGAAAA	57.582	33.333	0.00	0.00	0.00	2.29
510	511	5.335583	CGAAACCAGGATAAGCAACATGAAA	60.336	40.000	0.00	0.00	0.00	2.69
511	512	4.155826	CGAAACCAGGATAAGCAACATGAA	59.844	41.667	0.00	0.00	0.00	2.57
512	513	3.689161	CGAAACCAGGATAAGCAACATGA	59.311	43.478	0.00	0.00	0.00	3.07
513	514	3.731867	GCGAAACCAGGATAAGCAACATG	60.732	47.826	0.00	0.00	0.00	3.21
514	515	2.423538	GCGAAACCAGGATAAGCAACAT	59.576	45.455	0.00	0.00	0.00	2.71
515	516	1.810151	GCGAAACCAGGATAAGCAACA	59.190	47.619	0.00	0.00	0.00	3.33
516	517	1.132453	GGCGAAACCAGGATAAGCAAC	59.868	52.381	0.00	0.00	38.86	4.17
517	518	1.459450	GGCGAAACCAGGATAAGCAA	58.541	50.000	0.00	0.00	38.86	3.91
518	519	0.742990	CGGCGAAACCAGGATAAGCA	60.743	55.000	0.00	0.00	39.03	3.91
519	520	0.743345	ACGGCGAAACCAGGATAAGC	60.743	55.000	16.62	0.00	39.03	3.09
520	521	1.134788	AGACGGCGAAACCAGGATAAG	60.135	52.381	16.62	0.00	39.03	1.73
521	522	0.899720	AGACGGCGAAACCAGGATAA	59.100	50.000	16.62	0.00	39.03	1.75
522	523	0.458669	GAGACGGCGAAACCAGGATA	59.541	55.000	16.62	0.00	39.03	2.59
523	524	1.218316	GAGACGGCGAAACCAGGAT	59.782	57.895	16.62	0.00	39.03	3.24
524	525	2.654877	GAGACGGCGAAACCAGGA	59.345	61.111	16.62	0.00	39.03	3.86
525	526	2.434359	GGAGACGGCGAAACCAGG	60.434	66.667	16.62	0.00	39.03	4.45
526	527	2.027625	GTGGAGACGGCGAAACCAG	61.028	63.158	16.62	0.00	39.03	4.00
527	528	2.029964	GTGGAGACGGCGAAACCA	59.970	61.111	16.62	16.27	39.03	3.67
528	529	2.741211	GGTGGAGACGGCGAAACC	60.741	66.667	16.62	13.71	0.00	3.27
529	530	1.737008	GAGGTGGAGACGGCGAAAC	60.737	63.158	16.62	4.50	0.00	2.78
530	531	1.750341	TTGAGGTGGAGACGGCGAAA	61.750	55.000	16.62	0.00	0.00	3.46
531	532	2.204461	TTGAGGTGGAGACGGCGAA	61.204	57.895	16.62	0.00	0.00	4.70
532	533	2.599281	TTGAGGTGGAGACGGCGA	60.599	61.111	16.62	0.00	0.00	5.54
533	534	2.432628	GTTGAGGTGGAGACGGCG	60.433	66.667	4.80	4.80	0.00	6.46
534	535	1.374758	CAGTTGAGGTGGAGACGGC	60.375	63.158	0.00	0.00	0.00	5.68
535	536	1.185618	TCCAGTTGAGGTGGAGACGG	61.186	60.000	0.00	0.00	39.28	4.79
536	537	2.351777	TCCAGTTGAGGTGGAGACG	58.648	57.895	0.00	0.00	39.28	4.18
541	542	0.898320	AGACGATCCAGTTGAGGTGG	59.102	55.000	0.00	0.00	36.28	4.61
542	543	2.611518	GAAGACGATCCAGTTGAGGTG	58.388	52.381	0.00	0.00	0.00	4.00
543	544	1.550976	GGAAGACGATCCAGTTGAGGT	59.449	52.381	0.00	0.00	39.42	3.85
544	545	1.550524	TGGAAGACGATCCAGTTGAGG	59.449	52.381	5.46	0.00	44.52	3.86
552	553	0.179097	GCAGAGGTGGAAGACGATCC	60.179	60.000	0.00	0.00	40.10	3.36
553	554	0.179097	GGCAGAGGTGGAAGACGATC	60.179	60.000	0.00	0.00	0.00	3.69
554	555	1.617947	GGGCAGAGGTGGAAGACGAT	61.618	60.000	0.00	0.00	0.00	3.73
555	556	2.283529	GGGCAGAGGTGGAAGACGA	61.284	63.158	0.00	0.00	0.00	4.20
556	557	2.266055	GGGCAGAGGTGGAAGACG	59.734	66.667	0.00	0.00	0.00	4.18
557	558	1.298014	CTGGGCAGAGGTGGAAGAC	59.702	63.158	0.00	0.00	0.00	3.01
558	559	2.596851	GCTGGGCAGAGGTGGAAGA	61.597	63.158	0.00	0.00	0.00	2.87
559	560	2.045536	GCTGGGCAGAGGTGGAAG	60.046	66.667	0.00	0.00	0.00	3.46
560	561	2.853542	TGCTGGGCAGAGGTGGAA	60.854	61.111	0.00	0.00	33.32	3.53
561	562	3.640407	GTGCTGGGCAGAGGTGGA	61.640	66.667	0.00	0.00	40.08	4.02
562	563	3.496309	TTGTGCTGGGCAGAGGTGG	62.496	63.158	0.00	0.00	40.08	4.61
563	564	1.970114	CTTGTGCTGGGCAGAGGTG	60.970	63.158	0.00	0.00	40.08	4.00
564	565	2.433446	CTTGTGCTGGGCAGAGGT	59.567	61.111	0.00	0.00	40.08	3.85
565	566	2.360852	CCTTGTGCTGGGCAGAGG	60.361	66.667	7.24	7.24	40.08	3.69
566	567	1.376942	CTCCTTGTGCTGGGCAGAG	60.377	63.158	0.00	0.00	40.08	3.35
567	568	2.116983	GACTCCTTGTGCTGGGCAGA	62.117	60.000	0.00	0.00	40.08	4.26
568	569	1.673665	GACTCCTTGTGCTGGGCAG	60.674	63.158	0.00	0.00	40.08	4.85
569	570	2.116983	GAGACTCCTTGTGCTGGGCA	62.117	60.000	0.00	0.00	35.60	5.36
570	571	1.376553	GAGACTCCTTGTGCTGGGC	60.377	63.158	0.00	0.00	0.00	5.36
571	572	1.197430	AGGAGACTCCTTGTGCTGGG	61.197	60.000	18.94	0.00	46.91	4.45
572	573	2.370718	AGGAGACTCCTTGTGCTGG	58.629	57.895	18.94	0.00	46.91	4.85
584	585	1.808133	GCGTGATGAATGGGAGGAGAC	60.808	57.143	0.00	0.00	0.00	3.36
585	586	0.465705	GCGTGATGAATGGGAGGAGA	59.534	55.000	0.00	0.00	0.00	3.71
586	587	0.178767	TGCGTGATGAATGGGAGGAG	59.821	55.000	0.00	0.00	0.00	3.69
587	588	0.617935	TTGCGTGATGAATGGGAGGA	59.382	50.000	0.00	0.00	0.00	3.71
588	589	0.734889	GTTGCGTGATGAATGGGAGG	59.265	55.000	0.00	0.00	0.00	4.30
589	590	0.734889	GGTTGCGTGATGAATGGGAG	59.265	55.000	0.00	0.00	0.00	4.30
590	591	0.037447	TGGTTGCGTGATGAATGGGA	59.963	50.000	0.00	0.00	0.00	4.37
591	592	0.887247	TTGGTTGCGTGATGAATGGG	59.113	50.000	0.00	0.00	0.00	4.00
592	593	1.541147	ACTTGGTTGCGTGATGAATGG	59.459	47.619	0.00	0.00	0.00	3.16
593	594	2.226200	TGACTTGGTTGCGTGATGAATG	59.774	45.455	0.00	0.00	0.00	2.67
594	595	2.503331	TGACTTGGTTGCGTGATGAAT	58.497	42.857	0.00	0.00	0.00	2.57
595	596	1.960417	TGACTTGGTTGCGTGATGAA	58.040	45.000	0.00	0.00	0.00	2.57
596	597	1.960417	TTGACTTGGTTGCGTGATGA	58.040	45.000	0.00	0.00	0.00	2.92
597	598	2.290367	TCTTTGACTTGGTTGCGTGATG	59.710	45.455	0.00	0.00	0.00	3.07
598	599	2.571212	TCTTTGACTTGGTTGCGTGAT	58.429	42.857	0.00	0.00	0.00	3.06
599	600	2.031258	TCTTTGACTTGGTTGCGTGA	57.969	45.000	0.00	0.00	0.00	4.35
600	601	2.842208	TTCTTTGACTTGGTTGCGTG	57.158	45.000	0.00	0.00	0.00	5.34
601	602	3.507786	GTTTTCTTTGACTTGGTTGCGT	58.492	40.909	0.00	0.00	0.00	5.24
602	603	2.529894	CGTTTTCTTTGACTTGGTTGCG	59.470	45.455	0.00	0.00	0.00	4.85
603	604	2.857748	CCGTTTTCTTTGACTTGGTTGC	59.142	45.455	0.00	0.00	0.00	4.17
604	605	3.129638	TCCCGTTTTCTTTGACTTGGTTG	59.870	43.478	0.00	0.00	0.00	3.77
605	606	3.129813	GTCCCGTTTTCTTTGACTTGGTT	59.870	43.478	0.00	0.00	0.00	3.67
606	607	2.686405	GTCCCGTTTTCTTTGACTTGGT	59.314	45.455	0.00	0.00	0.00	3.67
607	608	2.286772	CGTCCCGTTTTCTTTGACTTGG	60.287	50.000	0.00	0.00	0.00	3.61
608	609	2.610374	TCGTCCCGTTTTCTTTGACTTG	59.390	45.455	0.00	0.00	0.00	3.16
609	610	2.610833	GTCGTCCCGTTTTCTTTGACTT	59.389	45.455	0.00	0.00	0.00	3.01
610	611	2.207590	GTCGTCCCGTTTTCTTTGACT	58.792	47.619	0.00	0.00	0.00	3.41
611	612	1.071041	CGTCGTCCCGTTTTCTTTGAC	60.071	52.381	0.00	0.00	0.00	3.18
612	613	1.202394	TCGTCGTCCCGTTTTCTTTGA	60.202	47.619	0.00	0.00	0.00	2.69
613	614	1.191647	CTCGTCGTCCCGTTTTCTTTG	59.808	52.381	0.00	0.00	0.00	2.77
614	615	1.494824	CTCGTCGTCCCGTTTTCTTT	58.505	50.000	0.00	0.00	0.00	2.52
615	616	0.319297	CCTCGTCGTCCCGTTTTCTT	60.319	55.000	0.00	0.00	0.00	2.52
616	617	1.174712	TCCTCGTCGTCCCGTTTTCT	61.175	55.000	0.00	0.00	0.00	2.52
617	618	1.005804	GTCCTCGTCGTCCCGTTTTC	61.006	60.000	0.00	0.00	0.00	2.29
618	619	1.006922	GTCCTCGTCGTCCCGTTTT	60.007	57.895	0.00	0.00	0.00	2.43
619	620	2.647297	GTCCTCGTCGTCCCGTTT	59.353	61.111	0.00	0.00	0.00	3.60
620	621	3.368571	GGTCCTCGTCGTCCCGTT	61.369	66.667	0.00	0.00	0.00	4.44
621	622	4.341783	AGGTCCTCGTCGTCCCGT	62.342	66.667	0.00	0.00	0.00	5.28
622	623	3.507009	GAGGTCCTCGTCGTCCCG	61.507	72.222	2.28	0.00	0.00	5.14
623	624	2.045143	AGAGGTCCTCGTCGTCCC	60.045	66.667	13.41	0.00	35.36	4.46
624	625	1.376942	TGAGAGGTCCTCGTCGTCC	60.377	63.158	13.41	1.22	44.92	4.79
625	626	0.954449	TGTGAGAGGTCCTCGTCGTC	60.954	60.000	13.41	6.11	44.92	4.20
626	627	0.536687	TTGTGAGAGGTCCTCGTCGT	60.537	55.000	13.41	0.00	44.92	4.34
627	628	0.169230	CTTGTGAGAGGTCCTCGTCG	59.831	60.000	13.41	0.00	44.92	5.12
628	629	0.528470	CCTTGTGAGAGGTCCTCGTC	59.472	60.000	13.41	11.40	44.92	4.20
629	630	0.900647	CCCTTGTGAGAGGTCCTCGT	60.901	60.000	13.41	1.96	44.92	4.18
630	631	0.900647	ACCCTTGTGAGAGGTCCTCG	60.901	60.000	13.41	0.00	44.92	4.63
631	632	0.899019	GACCCTTGTGAGAGGTCCTC	59.101	60.000	11.31	11.31	43.60	3.71
632	633	3.074788	GACCCTTGTGAGAGGTCCT	57.925	57.895	0.00	0.00	43.60	3.85
635	636	0.759436	ACGTGACCCTTGTGAGAGGT	60.759	55.000	0.00	0.00	34.88	3.85
636	637	0.319900	CACGTGACCCTTGTGAGAGG	60.320	60.000	10.90	0.00	35.66	3.69
637	638	0.389391	ACACGTGACCCTTGTGAGAG	59.611	55.000	25.01	0.00	37.08	3.20
638	639	0.104120	CACACGTGACCCTTGTGAGA	59.896	55.000	25.01	0.00	42.77	3.27
639	640	0.179084	ACACACGTGACCCTTGTGAG	60.179	55.000	25.01	1.20	42.77	3.51
640	641	0.250793	AACACACGTGACCCTTGTGA	59.749	50.000	25.01	0.00	42.77	3.58
641	642	1.091537	AAACACACGTGACCCTTGTG	58.908	50.000	25.01	10.65	45.11	3.33
642	643	2.695127	TAAACACACGTGACCCTTGT	57.305	45.000	25.01	12.97	0.00	3.16
643	644	5.445407	CGAATATAAACACACGTGACCCTTG	60.445	44.000	25.01	12.24	0.00	3.61
644	645	4.628333	CGAATATAAACACACGTGACCCTT	59.372	41.667	25.01	11.78	0.00	3.95
645	646	4.178540	CGAATATAAACACACGTGACCCT	58.821	43.478	25.01	6.38	0.00	4.34
646	647	3.242188	GCGAATATAAACACACGTGACCC	60.242	47.826	25.01	0.00	0.00	4.46
647	648	3.540744	CGCGAATATAAACACACGTGACC	60.541	47.826	25.01	0.00	34.05	4.02
648	649	3.580389	CGCGAATATAAACACACGTGAC	58.420	45.455	25.01	0.00	34.05	3.67
649	650	2.028284	GCGCGAATATAAACACACGTGA	59.972	45.455	25.01	0.00	34.05	4.35
650	651	2.350616	GCGCGAATATAAACACACGTG	58.649	47.619	15.48	15.48	35.03	4.49
677	682	1.518774	CAAATGGGTGGAGCATGCC	59.481	57.895	15.66	5.80	0.00	4.40
681	686	2.283821	GGCCAAATGGGTGGAGCA	60.284	61.111	0.00	0.00	41.65	4.26
683	688	2.755469	CGGGCCAAATGGGTGGAG	60.755	66.667	4.39	0.00	41.65	3.86
689	694	0.173255	GTCAATGACGGGCCAAATGG	59.827	55.000	4.39	0.00	38.53	3.16
700	705	2.048603	GCCAGGCCAGGTCAATGAC	61.049	63.158	16.66	4.51	0.00	3.06
896	910	1.000283	GAGTGGTGAGTGGTGAGTGAG	60.000	57.143	0.00	0.00	0.00	3.51
915	931	3.680937	GTGAATAATTCCGTTCCGTGTGA	59.319	43.478	0.00	0.00	0.00	3.58
916	932	3.482923	CGTGAATAATTCCGTTCCGTGTG	60.483	47.826	0.00	0.00	0.00	3.82
917	933	2.669434	CGTGAATAATTCCGTTCCGTGT	59.331	45.455	0.00	0.00	0.00	4.49
918	934	2.924926	TCGTGAATAATTCCGTTCCGTG	59.075	45.455	0.00	0.00	0.00	4.94
919	935	2.925563	GTCGTGAATAATTCCGTTCCGT	59.074	45.455	0.00	0.00	0.00	4.69
920	936	2.283351	GGTCGTGAATAATTCCGTTCCG	59.717	50.000	0.00	0.00	0.00	4.30
921	937	2.283351	CGGTCGTGAATAATTCCGTTCC	59.717	50.000	0.00	0.00	34.38	3.62
922	938	3.181397	TCGGTCGTGAATAATTCCGTTC	58.819	45.455	0.00	0.00	39.14	3.95
923	939	3.235157	TCGGTCGTGAATAATTCCGTT	57.765	42.857	0.00	0.00	39.14	4.44
935	951	0.599558	TACCAGGTCTTTCGGTCGTG	59.400	55.000	0.00	0.00	34.12	4.35
950	997	4.021719	GTCTTGTTGTACTACCAGCTACCA	60.022	45.833	4.98	0.00	0.00	3.25
951	998	4.021719	TGTCTTGTTGTACTACCAGCTACC	60.022	45.833	4.98	0.00	0.00	3.18
952	999	4.922103	GTGTCTTGTTGTACTACCAGCTAC	59.078	45.833	4.98	3.06	0.00	3.58
953	1000	4.021719	GGTGTCTTGTTGTACTACCAGCTA	60.022	45.833	4.98	0.00	0.00	3.32
954	1001	3.244112	GGTGTCTTGTTGTACTACCAGCT	60.244	47.826	4.98	0.00	0.00	4.24
955	1002	3.064931	GGTGTCTTGTTGTACTACCAGC	58.935	50.000	4.98	2.14	0.00	4.85
956	1003	3.005050	TCGGTGTCTTGTTGTACTACCAG	59.995	47.826	4.98	3.77	0.00	4.00
957	1004	2.957680	TCGGTGTCTTGTTGTACTACCA	59.042	45.455	4.98	0.00	0.00	3.25
958	1005	3.243501	TGTCGGTGTCTTGTTGTACTACC	60.244	47.826	4.98	0.00	0.00	3.18
959	1006	3.732721	GTGTCGGTGTCTTGTTGTACTAC	59.267	47.826	0.05	0.05	0.00	2.73
960	1007	3.380954	TGTGTCGGTGTCTTGTTGTACTA	59.619	43.478	0.00	0.00	0.00	1.82
961	1008	2.166870	TGTGTCGGTGTCTTGTTGTACT	59.833	45.455	0.00	0.00	0.00	2.73
962	1009	2.283351	GTGTGTCGGTGTCTTGTTGTAC	59.717	50.000	0.00	0.00	0.00	2.90
963	1010	2.542597	GTGTGTCGGTGTCTTGTTGTA	58.457	47.619	0.00	0.00	0.00	2.41
964	1011	1.365699	GTGTGTCGGTGTCTTGTTGT	58.634	50.000	0.00	0.00	0.00	3.32
965	1012	0.655733	GGTGTGTCGGTGTCTTGTTG	59.344	55.000	0.00	0.00	0.00	3.33
966	1013	0.250793	TGGTGTGTCGGTGTCTTGTT	59.749	50.000	0.00	0.00	0.00	2.83
967	1014	0.461339	GTGGTGTGTCGGTGTCTTGT	60.461	55.000	0.00	0.00	0.00	3.16
968	1015	0.461163	TGTGGTGTGTCGGTGTCTTG	60.461	55.000	0.00	0.00	0.00	3.02
969	1016	0.179084	CTGTGGTGTGTCGGTGTCTT	60.179	55.000	0.00	0.00	0.00	3.01
970	1017	1.441729	CTGTGGTGTGTCGGTGTCT	59.558	57.895	0.00	0.00	0.00	3.41
971	1018	1.594293	CCTGTGGTGTGTCGGTGTC	60.594	63.158	0.00	0.00	0.00	3.67
972	1019	2.504032	CCTGTGGTGTGTCGGTGT	59.496	61.111	0.00	0.00	0.00	4.16
973	1020	2.280797	CCCTGTGGTGTGTCGGTG	60.281	66.667	0.00	0.00	0.00	4.94
974	1021	4.250305	GCCCTGTGGTGTGTCGGT	62.250	66.667	0.00	0.00	0.00	4.69
1064	1112	2.693250	TATGGCCGCGGAGATGAACG	62.693	60.000	33.48	0.00	0.00	3.95
1074	1122	2.281070	AGCAGGAATATGGCCGCG	60.281	61.111	0.00	0.00	32.71	6.46
1265	1332	2.827190	CCGATCCGACTCCGTCCA	60.827	66.667	0.00	0.00	0.00	4.02
1838	1935	2.047560	GGAACCAACTCGTCCCGG	60.048	66.667	0.00	0.00	0.00	5.73
1876	1974	1.580815	TTTTTAAACGCGTCCGAGGT	58.419	45.000	14.44	0.00	38.29	3.85
2497	5853	4.263209	CAGCGCCGGCAACAACAA	62.263	61.111	28.98	0.00	43.41	2.83
2590	5946	4.477975	GAGGTCGAGGTCGTGCGG	62.478	72.222	0.00	0.00	40.80	5.69
2714	6070	4.096003	CCAGGCGAACATCCCGGT	62.096	66.667	0.00	0.00	0.00	5.28
2783	6140	3.842923	CAGAGATGAGGCGGCGGT	61.843	66.667	9.78	0.00	0.00	5.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.