Multiple sequence alignment - TraesCS3D01G024200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G024200 chr3D 100.000 2801 0 0 1 2801 7694140 7696940 0.000000e+00 5173.0
1 TraesCS3D01G024200 chr3D 96.354 576 18 3 2226 2799 99808200 99807626 0.000000e+00 944.0
2 TraesCS3D01G024200 chr3D 83.706 804 74 25 994 1764 7604811 7604032 0.000000e+00 706.0
3 TraesCS3D01G024200 chr3D 91.304 483 32 1 1763 2235 99808902 99808420 0.000000e+00 651.0
4 TraesCS3D01G024200 chr3D 83.740 369 51 5 1211 1570 7601142 7600774 9.610000e-90 340.0
5 TraesCS3D01G024200 chr3A 92.403 1053 46 17 720 1764 12745173 12744147 0.000000e+00 1471.0
6 TraesCS3D01G024200 chr3A 92.165 485 33 4 1754 2233 25007985 25008469 0.000000e+00 680.0
7 TraesCS3D01G024200 chr3A 84.410 712 78 20 1077 1770 12784484 12785180 0.000000e+00 669.0
8 TraesCS3D01G024200 chr3A 82.574 373 48 6 1211 1566 12786307 12786679 2.090000e-81 313.0
9 TraesCS3D01G024200 chr3B 90.397 781 52 11 994 1764 10013932 10014699 0.000000e+00 1005.0
10 TraesCS3D01G024200 chr3B 83.354 823 79 36 983 1776 9931364 9930571 0.000000e+00 708.0
11 TraesCS3D01G024200 chr3B 91.822 269 14 4 652 915 10013636 10013901 4.410000e-98 368.0
12 TraesCS3D01G024200 chr3B 82.703 370 53 7 1211 1570 690442134 690441766 4.500000e-83 318.0
13 TraesCS3D01G024200 chr5D 96.870 575 16 2 2226 2799 409340503 409341076 0.000000e+00 961.0
14 TraesCS3D01G024200 chr5D 95.637 573 23 2 2228 2799 345968724 345968153 0.000000e+00 918.0
15 TraesCS3D01G024200 chr5D 93.210 486 15 6 1766 2235 345969448 345968965 0.000000e+00 699.0
16 TraesCS3D01G024200 chr5D 89.069 494 30 10 1763 2235 249910217 249909727 2.400000e-165 592.0
17 TraesCS3D01G024200 chr5D 89.004 482 29 4 1763 2232 409339784 409340253 2.420000e-160 575.0
18 TraesCS3D01G024200 chr5D 85.976 164 20 3 1761 1921 282487383 282487220 3.710000e-39 172.0
19 TraesCS3D01G024200 chr7D 96.522 575 18 2 2226 2799 194789571 194788998 0.000000e+00 950.0
20 TraesCS3D01G024200 chr7D 91.598 488 22 7 1763 2235 46853885 46854368 0.000000e+00 656.0
21 TraesCS3D01G024200 chr7D 90.400 500 23 6 1761 2235 194790317 194789818 3.940000e-178 634.0
22 TraesCS3D01G024200 chr7D 90.061 493 26 6 1763 2233 576659248 576659739 3.960000e-173 617.0
23 TraesCS3D01G024200 chr7D 89.791 431 27 5 1763 2176 13070608 13070178 1.140000e-148 536.0
24 TraesCS3D01G024200 chr7D 83.727 381 39 11 1212 1570 479598503 479598124 3.460000e-89 339.0
25 TraesCS3D01G024200 chr1D 96.348 575 19 2 2226 2799 54946219 54945646 0.000000e+00 944.0
26 TraesCS3D01G024200 chr1D 92.149 484 25 6 1759 2235 54946943 54946466 0.000000e+00 671.0
27 TraesCS3D01G024200 chr1D 89.524 105 10 1 1761 1864 9310002 9310106 6.300000e-27 132.0
28 TraesCS3D01G024200 chr1D 83.898 118 17 2 1761 1876 464855098 464854981 8.200000e-21 111.0
29 TraesCS3D01G024200 chr2D 95.645 574 23 2 2226 2798 338672304 338671732 0.000000e+00 920.0
30 TraesCS3D01G024200 chr6D 95.478 575 24 2 2226 2799 101226794 101227367 0.000000e+00 917.0
31 TraesCS3D01G024200 chr6D 86.255 502 31 12 1761 2235 101226059 101226549 6.920000e-141 510.0
32 TraesCS3D01G024200 chr6D 85.861 488 39 11 1761 2235 42387017 42386547 2.510000e-135 492.0
33 TraesCS3D01G024200 chr6D 85.276 163 22 2 1761 1922 345786641 345786802 1.730000e-37 167.0
34 TraesCS3D01G024200 chr4D 95.782 569 23 1 2231 2799 77312524 77313091 0.000000e+00 917.0
35 TraesCS3D01G024200 chr4D 94.783 575 27 3 2226 2799 308810780 308811352 0.000000e+00 893.0
36 TraesCS3D01G024200 chr4D 90.964 498 18 7 1763 2235 77311794 77312289 0.000000e+00 645.0
37 TraesCS3D01G024200 chr4D 89.841 502 21 5 1763 2235 308810033 308810533 3.960000e-173 617.0
38 TraesCS3D01G024200 chr4D 83.333 168 25 3 1757 1922 55440436 55440602 4.830000e-33 152.0
39 TraesCS3D01G024200 chr4D 89.524 105 8 3 1761 1864 366315502 366315604 2.260000e-26 130.0
40 TraesCS3D01G024200 chr4D 89.888 89 7 2 1760 1846 409150532 409150444 2.280000e-21 113.0
41 TraesCS3D01G024200 chr4D 81.343 134 22 3 1757 1888 394672288 394672156 3.820000e-19 106.0
42 TraesCS3D01G024200 chr4D 81.148 122 20 3 1754 1873 19205475 19205355 8.260000e-16 95.3
43 TraesCS3D01G024200 chrUn 89.914 466 42 3 1775 2235 90975276 90975741 1.860000e-166 595.0
44 TraesCS3D01G024200 chr4A 88.778 499 29 6 1760 2235 555976004 555976498 1.120000e-163 586.0
45 TraesCS3D01G024200 chr6A 87.751 498 36 7 1758 2235 600310704 600311196 2.440000e-155 558.0
46 TraesCS3D01G024200 chr7B 82.940 381 42 11 1212 1570 505369407 505369028 3.480000e-84 322.0
47 TraesCS3D01G024200 chr7A 82.940 381 40 11 1213 1570 515226751 515227129 1.250000e-83 320.0
48 TraesCS3D01G024200 chr1A 84.848 165 22 3 1761 1922 486575814 486575650 2.230000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G024200 chr3D 7694140 7696940 2800 False 5173.0 5173 100.0000 1 2801 1 chr3D.!!$F1 2800
1 TraesCS3D01G024200 chr3D 99807626 99808902 1276 True 797.5 944 93.8290 1763 2799 2 chr3D.!!$R2 1036
2 TraesCS3D01G024200 chr3D 7600774 7604811 4037 True 523.0 706 83.7230 994 1764 2 chr3D.!!$R1 770
3 TraesCS3D01G024200 chr3A 12744147 12745173 1026 True 1471.0 1471 92.4030 720 1764 1 chr3A.!!$R1 1044
4 TraesCS3D01G024200 chr3A 12784484 12786679 2195 False 491.0 669 83.4920 1077 1770 2 chr3A.!!$F2 693
5 TraesCS3D01G024200 chr3B 9930571 9931364 793 True 708.0 708 83.3540 983 1776 1 chr3B.!!$R1 793
6 TraesCS3D01G024200 chr3B 10013636 10014699 1063 False 686.5 1005 91.1095 652 1764 2 chr3B.!!$F1 1112
7 TraesCS3D01G024200 chr5D 345968153 345969448 1295 True 808.5 918 94.4235 1766 2799 2 chr5D.!!$R3 1033
8 TraesCS3D01G024200 chr5D 409339784 409341076 1292 False 768.0 961 92.9370 1763 2799 2 chr5D.!!$F1 1036
9 TraesCS3D01G024200 chr7D 194788998 194790317 1319 True 792.0 950 93.4610 1761 2799 2 chr7D.!!$R3 1038
10 TraesCS3D01G024200 chr1D 54945646 54946943 1297 True 807.5 944 94.2485 1759 2799 2 chr1D.!!$R2 1040
11 TraesCS3D01G024200 chr2D 338671732 338672304 572 True 920.0 920 95.6450 2226 2798 1 chr2D.!!$R1 572
12 TraesCS3D01G024200 chr6D 101226059 101227367 1308 False 713.5 917 90.8665 1761 2799 2 chr6D.!!$F2 1038
13 TraesCS3D01G024200 chr4D 77311794 77313091 1297 False 781.0 917 93.3730 1763 2799 2 chr4D.!!$F3 1036
14 TraesCS3D01G024200 chr4D 308810033 308811352 1319 False 755.0 893 92.3120 1763 2799 2 chr4D.!!$F4 1036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 999 0.032952 TTCACGACCGAAAGACCTGG 59.967 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1974 1.580815 TTTTTAAACGCGTCCGAGGT 58.419 45.0 14.44 0.0 38.29 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.135315 CTTGCTTTGGTCGGATGCG 59.865 57.895 0.00 0.00 0.00 4.73
19 20 2.855728 CTTGCTTTGGTCGGATGCGC 62.856 60.000 0.00 0.00 0.00 6.09
20 21 4.520846 GCTTTGGTCGGATGCGCG 62.521 66.667 0.00 0.00 0.00 6.86
21 22 4.520846 CTTTGGTCGGATGCGCGC 62.521 66.667 27.26 27.26 0.00 6.86
29 30 3.344215 GGATGCGCGCCAGATGAG 61.344 66.667 30.77 0.00 0.00 2.90
30 31 2.587194 GATGCGCGCCAGATGAGT 60.587 61.111 30.77 3.76 0.00 3.41
31 32 2.124983 ATGCGCGCCAGATGAGTT 60.125 55.556 30.77 0.00 0.00 3.01
32 33 2.098842 GATGCGCGCCAGATGAGTTC 62.099 60.000 30.77 7.42 0.00 3.01
33 34 3.918220 GCGCGCCAGATGAGTTCG 61.918 66.667 23.24 0.00 0.00 3.95
34 35 2.507102 CGCGCCAGATGAGTTCGT 60.507 61.111 0.00 0.00 0.00 3.85
35 36 2.792290 CGCGCCAGATGAGTTCGTG 61.792 63.158 0.00 0.00 0.00 4.35
36 37 3.084579 CGCCAGATGAGTTCGTGC 58.915 61.111 0.00 0.00 0.00 5.34
37 38 2.792290 CGCCAGATGAGTTCGTGCG 61.792 63.158 0.00 0.00 40.82 5.34
38 39 1.738099 GCCAGATGAGTTCGTGCGT 60.738 57.895 0.00 0.00 0.00 5.24
39 40 1.959899 GCCAGATGAGTTCGTGCGTG 61.960 60.000 0.00 0.00 0.00 5.34
40 41 0.667487 CCAGATGAGTTCGTGCGTGT 60.667 55.000 0.00 0.00 0.00 4.49
41 42 1.139989 CAGATGAGTTCGTGCGTGTT 58.860 50.000 0.00 0.00 0.00 3.32
42 43 1.526887 CAGATGAGTTCGTGCGTGTTT 59.473 47.619 0.00 0.00 0.00 2.83
43 44 2.729360 CAGATGAGTTCGTGCGTGTTTA 59.271 45.455 0.00 0.00 0.00 2.01
44 45 3.367932 CAGATGAGTTCGTGCGTGTTTAT 59.632 43.478 0.00 0.00 0.00 1.40
45 46 3.994392 AGATGAGTTCGTGCGTGTTTATT 59.006 39.130 0.00 0.00 0.00 1.40
46 47 4.451096 AGATGAGTTCGTGCGTGTTTATTT 59.549 37.500 0.00 0.00 0.00 1.40
47 48 4.123276 TGAGTTCGTGCGTGTTTATTTC 57.877 40.909 0.00 0.00 0.00 2.17
48 49 3.805422 TGAGTTCGTGCGTGTTTATTTCT 59.195 39.130 0.00 0.00 0.00 2.52
49 50 4.084745 TGAGTTCGTGCGTGTTTATTTCTC 60.085 41.667 0.00 0.00 0.00 2.87
50 51 4.056050 AGTTCGTGCGTGTTTATTTCTCT 58.944 39.130 0.00 0.00 0.00 3.10
51 52 4.084537 AGTTCGTGCGTGTTTATTTCTCTG 60.085 41.667 0.00 0.00 0.00 3.35
52 53 2.156891 TCGTGCGTGTTTATTTCTCTGC 59.843 45.455 0.00 0.00 0.00 4.26
53 54 2.096466 CGTGCGTGTTTATTTCTCTGCA 60.096 45.455 0.00 0.00 0.00 4.41
54 55 3.424829 CGTGCGTGTTTATTTCTCTGCAT 60.425 43.478 0.00 0.00 33.25 3.96
55 56 3.848019 GTGCGTGTTTATTTCTCTGCATG 59.152 43.478 0.00 0.00 33.25 4.06
56 57 3.501828 TGCGTGTTTATTTCTCTGCATGT 59.498 39.130 0.00 0.00 0.00 3.21
57 58 4.023279 TGCGTGTTTATTTCTCTGCATGTT 60.023 37.500 0.00 0.00 0.00 2.71
58 59 4.321745 GCGTGTTTATTTCTCTGCATGTTG 59.678 41.667 0.00 0.00 0.00 3.33
59 60 4.853196 CGTGTTTATTTCTCTGCATGTTGG 59.147 41.667 0.00 0.00 0.00 3.77
60 61 5.163513 GTGTTTATTTCTCTGCATGTTGGG 58.836 41.667 0.00 0.00 0.00 4.12
61 62 4.832266 TGTTTATTTCTCTGCATGTTGGGT 59.168 37.500 0.00 0.00 0.00 4.51
62 63 5.304101 TGTTTATTTCTCTGCATGTTGGGTT 59.696 36.000 0.00 0.00 0.00 4.11
63 64 6.183360 TGTTTATTTCTCTGCATGTTGGGTTT 60.183 34.615 0.00 0.00 0.00 3.27
64 65 3.731652 TTTCTCTGCATGTTGGGTTTG 57.268 42.857 0.00 0.00 0.00 2.93
65 66 2.655090 TCTCTGCATGTTGGGTTTGA 57.345 45.000 0.00 0.00 0.00 2.69
66 67 3.159213 TCTCTGCATGTTGGGTTTGAT 57.841 42.857 0.00 0.00 0.00 2.57
67 68 2.821378 TCTCTGCATGTTGGGTTTGATG 59.179 45.455 0.00 0.00 0.00 3.07
68 69 1.894466 TCTGCATGTTGGGTTTGATGG 59.106 47.619 0.00 0.00 0.00 3.51
69 70 1.894466 CTGCATGTTGGGTTTGATGGA 59.106 47.619 0.00 0.00 0.00 3.41
70 71 1.894466 TGCATGTTGGGTTTGATGGAG 59.106 47.619 0.00 0.00 0.00 3.86
71 72 1.205417 GCATGTTGGGTTTGATGGAGG 59.795 52.381 0.00 0.00 0.00 4.30
72 73 1.826720 CATGTTGGGTTTGATGGAGGG 59.173 52.381 0.00 0.00 0.00 4.30
73 74 1.153539 TGTTGGGTTTGATGGAGGGA 58.846 50.000 0.00 0.00 0.00 4.20
74 75 1.501170 TGTTGGGTTTGATGGAGGGAA 59.499 47.619 0.00 0.00 0.00 3.97
75 76 1.893137 GTTGGGTTTGATGGAGGGAAC 59.107 52.381 0.00 0.00 0.00 3.62
87 88 4.309950 GGGAACCGTGGAGTGCGT 62.310 66.667 0.00 0.00 40.86 5.24
88 89 2.280592 GGAACCGTGGAGTGCGTT 60.281 61.111 0.00 0.00 0.00 4.84
89 90 2.315386 GGAACCGTGGAGTGCGTTC 61.315 63.158 0.00 0.00 0.00 3.95
90 91 2.654912 GAACCGTGGAGTGCGTTCG 61.655 63.158 0.00 0.00 0.00 3.95
91 92 3.435030 AACCGTGGAGTGCGTTCGT 62.435 57.895 0.00 0.00 0.00 3.85
92 93 3.103911 CCGTGGAGTGCGTTCGTC 61.104 66.667 0.00 0.00 0.00 4.20
93 94 3.458579 CGTGGAGTGCGTTCGTCG 61.459 66.667 0.00 0.00 43.12 5.12
94 95 3.103911 GTGGAGTGCGTTCGTCGG 61.104 66.667 0.00 0.00 40.26 4.79
95 96 3.598715 TGGAGTGCGTTCGTCGGT 61.599 61.111 0.00 0.00 40.26 4.69
96 97 2.355481 GGAGTGCGTTCGTCGGTT 60.355 61.111 0.00 0.00 40.26 4.44
97 98 2.654912 GGAGTGCGTTCGTCGGTTG 61.655 63.158 0.00 0.00 40.26 3.77
98 99 2.654912 GAGTGCGTTCGTCGGTTGG 61.655 63.158 0.00 0.00 40.26 3.77
99 100 2.963320 GTGCGTTCGTCGGTTGGT 60.963 61.111 0.00 0.00 40.26 3.67
100 101 2.202905 TGCGTTCGTCGGTTGGTT 60.203 55.556 0.00 0.00 40.26 3.67
101 102 1.814586 TGCGTTCGTCGGTTGGTTT 60.815 52.632 0.00 0.00 40.26 3.27
102 103 0.529337 TGCGTTCGTCGGTTGGTTTA 60.529 50.000 0.00 0.00 40.26 2.01
103 104 0.792031 GCGTTCGTCGGTTGGTTTAT 59.208 50.000 0.00 0.00 40.26 1.40
104 105 1.195222 GCGTTCGTCGGTTGGTTTATT 59.805 47.619 0.00 0.00 40.26 1.40
105 106 2.411409 GCGTTCGTCGGTTGGTTTATTA 59.589 45.455 0.00 0.00 40.26 0.98
106 107 3.120718 GCGTTCGTCGGTTGGTTTATTAA 60.121 43.478 0.00 0.00 40.26 1.40
107 108 4.610231 GCGTTCGTCGGTTGGTTTATTAAA 60.610 41.667 0.00 0.00 40.26 1.52
108 109 4.840239 CGTTCGTCGGTTGGTTTATTAAAC 59.160 41.667 10.26 10.26 36.97 2.01
109 110 5.333263 CGTTCGTCGGTTGGTTTATTAAACT 60.333 40.000 16.64 0.00 37.43 2.66
110 111 6.429624 GTTCGTCGGTTGGTTTATTAAACTT 58.570 36.000 16.64 0.00 41.14 2.66
111 112 6.226988 TCGTCGGTTGGTTTATTAAACTTC 57.773 37.500 16.64 8.85 41.14 3.01
112 113 5.757320 TCGTCGGTTGGTTTATTAAACTTCA 59.243 36.000 16.64 6.68 41.14 3.02
113 114 6.259608 TCGTCGGTTGGTTTATTAAACTTCAA 59.740 34.615 16.64 11.36 41.14 2.69
114 115 6.911511 CGTCGGTTGGTTTATTAAACTTCAAA 59.088 34.615 16.64 6.32 41.14 2.69
115 116 7.096925 CGTCGGTTGGTTTATTAAACTTCAAAC 60.097 37.037 16.64 14.36 41.14 2.93
116 117 7.916977 GTCGGTTGGTTTATTAAACTTCAAACT 59.083 33.333 16.64 0.00 41.14 2.66
117 118 8.468399 TCGGTTGGTTTATTAAACTTCAAACTT 58.532 29.630 16.64 0.00 41.14 2.66
118 119 8.748582 CGGTTGGTTTATTAAACTTCAAACTTC 58.251 33.333 16.64 4.58 41.14 3.01
119 120 9.589111 GGTTGGTTTATTAAACTTCAAACTTCA 57.411 29.630 16.64 3.11 41.14 3.02
148 149 7.895759 TCTTTTGATATGGAAAAACCTTGAGG 58.104 34.615 0.00 0.00 39.86 3.86
168 169 5.549742 AGGTGATTCCTTTTGCAAATTGA 57.450 34.783 13.65 9.73 45.67 2.57
169 170 5.927819 AGGTGATTCCTTTTGCAAATTGAA 58.072 33.333 13.65 17.58 45.67 2.69
170 171 5.759763 AGGTGATTCCTTTTGCAAATTGAAC 59.240 36.000 19.95 15.43 45.67 3.18
171 172 5.526846 GGTGATTCCTTTTGCAAATTGAACA 59.473 36.000 19.95 17.01 0.00 3.18
172 173 6.205270 GGTGATTCCTTTTGCAAATTGAACAT 59.795 34.615 19.95 10.04 0.00 2.71
173 174 7.387397 GGTGATTCCTTTTGCAAATTGAACATA 59.613 33.333 19.95 10.64 0.00 2.29
174 175 8.938906 GTGATTCCTTTTGCAAATTGAACATAT 58.061 29.630 19.95 9.24 0.00 1.78
175 176 9.153721 TGATTCCTTTTGCAAATTGAACATATC 57.846 29.630 19.95 15.41 0.00 1.63
176 177 9.153721 GATTCCTTTTGCAAATTGAACATATCA 57.846 29.630 19.95 3.70 35.85 2.15
191 192 9.577110 TTGAACATATCAAAATCTGCATTCTTC 57.423 29.630 0.00 0.00 44.94 2.87
192 193 8.741841 TGAACATATCAAAATCTGCATTCTTCA 58.258 29.630 0.00 0.00 34.30 3.02
193 194 9.745880 GAACATATCAAAATCTGCATTCTTCAT 57.254 29.630 0.00 0.00 0.00 2.57
194 195 9.529325 AACATATCAAAATCTGCATTCTTCATG 57.471 29.630 0.00 0.00 35.73 3.07
195 196 8.692710 ACATATCAAAATCTGCATTCTTCATGT 58.307 29.630 0.00 0.00 34.98 3.21
254 255 9.476202 AATCAAACTAAAATGTTAACTTGAGCC 57.524 29.630 7.22 0.00 29.79 4.70
255 256 8.232913 TCAAACTAAAATGTTAACTTGAGCCT 57.767 30.769 7.22 0.00 0.00 4.58
256 257 8.691797 TCAAACTAAAATGTTAACTTGAGCCTT 58.308 29.630 7.22 0.00 0.00 4.35
257 258 9.959749 CAAACTAAAATGTTAACTTGAGCCTTA 57.040 29.630 7.22 0.00 0.00 2.69
263 264 7.396540 AATGTTAACTTGAGCCTTATTCTGG 57.603 36.000 7.22 0.00 0.00 3.86
275 276 6.734104 GCCTTATTCTGGCTATATCTTGTG 57.266 41.667 0.00 0.00 46.38 3.33
276 277 6.467677 GCCTTATTCTGGCTATATCTTGTGA 58.532 40.000 0.00 0.00 46.38 3.58
277 278 7.108847 GCCTTATTCTGGCTATATCTTGTGAT 58.891 38.462 0.00 0.00 46.38 3.06
278 279 7.279758 GCCTTATTCTGGCTATATCTTGTGATC 59.720 40.741 0.00 0.00 46.38 2.92
279 280 7.768120 CCTTATTCTGGCTATATCTTGTGATCC 59.232 40.741 0.00 0.00 34.32 3.36
280 281 6.692849 ATTCTGGCTATATCTTGTGATCCA 57.307 37.500 0.00 0.00 34.32 3.41
281 282 6.692849 TTCTGGCTATATCTTGTGATCCAT 57.307 37.500 0.00 0.00 34.32 3.41
282 283 6.046290 TCTGGCTATATCTTGTGATCCATG 57.954 41.667 0.00 0.00 34.32 3.66
283 284 5.545335 TCTGGCTATATCTTGTGATCCATGT 59.455 40.000 0.00 0.00 34.32 3.21
284 285 6.043590 TCTGGCTATATCTTGTGATCCATGTT 59.956 38.462 0.00 0.00 34.32 2.71
285 286 7.235399 TCTGGCTATATCTTGTGATCCATGTTA 59.765 37.037 0.00 0.00 34.32 2.41
286 287 7.921304 TGGCTATATCTTGTGATCCATGTTAT 58.079 34.615 0.00 0.00 34.32 1.89
287 288 9.045745 TGGCTATATCTTGTGATCCATGTTATA 57.954 33.333 0.00 0.70 34.32 0.98
295 296 9.330063 TCTTGTGATCCATGTTATATCTGAAAC 57.670 33.333 0.00 0.00 0.00 2.78
296 297 8.450578 TTGTGATCCATGTTATATCTGAAACC 57.549 34.615 0.00 0.00 0.00 3.27
297 298 7.805163 TGTGATCCATGTTATATCTGAAACCT 58.195 34.615 0.00 0.00 0.00 3.50
298 299 8.933653 TGTGATCCATGTTATATCTGAAACCTA 58.066 33.333 0.00 0.00 0.00 3.08
299 300 9.950496 GTGATCCATGTTATATCTGAAACCTAT 57.050 33.333 0.00 0.00 0.00 2.57
314 315 9.859427 TCTGAAACCTATTCTTTTTGCATATTG 57.141 29.630 0.00 0.00 0.00 1.90
315 316 9.859427 CTGAAACCTATTCTTTTTGCATATTGA 57.141 29.630 0.00 0.00 0.00 2.57
316 317 9.859427 TGAAACCTATTCTTTTTGCATATTGAG 57.141 29.630 0.00 0.00 0.00 3.02
317 318 9.860898 GAAACCTATTCTTTTTGCATATTGAGT 57.139 29.630 0.00 0.00 0.00 3.41
318 319 9.860898 AAACCTATTCTTTTTGCATATTGAGTC 57.139 29.630 0.00 0.00 0.00 3.36
319 320 7.697691 ACCTATTCTTTTTGCATATTGAGTCG 58.302 34.615 0.00 0.00 0.00 4.18
320 321 7.336931 ACCTATTCTTTTTGCATATTGAGTCGT 59.663 33.333 0.00 0.00 0.00 4.34
321 322 8.184192 CCTATTCTTTTTGCATATTGAGTCGTT 58.816 33.333 0.00 0.00 0.00 3.85
322 323 9.214953 CTATTCTTTTTGCATATTGAGTCGTTC 57.785 33.333 0.00 0.00 0.00 3.95
323 324 6.552859 TCTTTTTGCATATTGAGTCGTTCA 57.447 33.333 0.00 0.00 0.00 3.18
335 336 6.671614 TTGAGTCGTTCAACACATACTTTT 57.328 33.333 1.86 0.00 40.82 2.27
336 337 6.671614 TGAGTCGTTCAACACATACTTTTT 57.328 33.333 0.00 0.00 31.34 1.94
364 365 9.520515 AGAGCTTTAAGATTAGGTTTGAATGAA 57.479 29.630 0.00 0.00 0.00 2.57
427 428 9.958180 TTAAATGACTTCCACTCATATCTTTCA 57.042 29.630 0.00 0.00 0.00 2.69
428 429 8.868522 AAATGACTTCCACTCATATCTTTCAA 57.131 30.769 0.00 0.00 0.00 2.69
429 430 8.868522 AATGACTTCCACTCATATCTTTCAAA 57.131 30.769 0.00 0.00 0.00 2.69
430 431 7.912056 TGACTTCCACTCATATCTTTCAAAG 57.088 36.000 0.00 0.00 0.00 2.77
431 432 7.453393 TGACTTCCACTCATATCTTTCAAAGT 58.547 34.615 0.00 0.00 0.00 2.66
432 433 8.593679 TGACTTCCACTCATATCTTTCAAAGTA 58.406 33.333 0.00 0.00 0.00 2.24
433 434 9.436957 GACTTCCACTCATATCTTTCAAAGTAA 57.563 33.333 0.00 0.00 0.00 2.24
434 435 9.793259 ACTTCCACTCATATCTTTCAAAGTAAA 57.207 29.630 0.00 0.00 0.00 2.01
477 478 9.838339 ACTTAATATCGAATGAAGATTGTTCCT 57.162 29.630 10.09 0.00 0.00 3.36
480 481 7.897575 ATATCGAATGAAGATTGTTCCTAGC 57.102 36.000 0.00 0.00 0.00 3.42
481 482 5.084818 TCGAATGAAGATTGTTCCTAGCA 57.915 39.130 0.00 0.00 0.00 3.49
482 483 5.487433 TCGAATGAAGATTGTTCCTAGCAA 58.513 37.500 0.00 0.00 0.00 3.91
483 484 5.937540 TCGAATGAAGATTGTTCCTAGCAAA 59.062 36.000 0.00 0.00 0.00 3.68
484 485 6.092670 TCGAATGAAGATTGTTCCTAGCAAAG 59.907 38.462 0.00 0.00 0.00 2.77
485 486 6.128172 CGAATGAAGATTGTTCCTAGCAAAGT 60.128 38.462 0.00 0.00 0.00 2.66
486 487 7.530426 AATGAAGATTGTTCCTAGCAAAGTT 57.470 32.000 0.00 0.00 0.00 2.66
487 488 6.959639 TGAAGATTGTTCCTAGCAAAGTTT 57.040 33.333 0.00 0.00 0.00 2.66
488 489 6.738114 TGAAGATTGTTCCTAGCAAAGTTTG 58.262 36.000 11.41 11.41 0.00 2.93
489 490 6.321181 TGAAGATTGTTCCTAGCAAAGTTTGT 59.679 34.615 16.70 6.68 0.00 2.83
490 491 7.500892 TGAAGATTGTTCCTAGCAAAGTTTGTA 59.499 33.333 16.70 7.41 0.00 2.41
491 492 7.440523 AGATTGTTCCTAGCAAAGTTTGTAG 57.559 36.000 16.70 14.93 0.00 2.74
492 493 5.432885 TTGTTCCTAGCAAAGTTTGTAGC 57.567 39.130 16.70 2.98 0.00 3.58
493 494 4.714632 TGTTCCTAGCAAAGTTTGTAGCT 58.285 39.130 16.70 10.32 40.92 3.32
494 495 5.130350 TGTTCCTAGCAAAGTTTGTAGCTT 58.870 37.500 16.70 1.69 38.47 3.74
495 496 6.292923 TGTTCCTAGCAAAGTTTGTAGCTTA 58.707 36.000 16.70 2.65 38.47 3.09
496 497 6.940298 TGTTCCTAGCAAAGTTTGTAGCTTAT 59.060 34.615 16.70 0.00 38.47 1.73
497 498 6.985188 TCCTAGCAAAGTTTGTAGCTTATG 57.015 37.500 16.70 5.29 38.47 1.90
498 499 6.472887 TCCTAGCAAAGTTTGTAGCTTATGT 58.527 36.000 16.70 0.00 38.47 2.29
499 500 6.940298 TCCTAGCAAAGTTTGTAGCTTATGTT 59.060 34.615 16.70 0.00 38.47 2.71
500 501 7.447238 TCCTAGCAAAGTTTGTAGCTTATGTTT 59.553 33.333 16.70 0.00 38.47 2.83
501 502 7.538678 CCTAGCAAAGTTTGTAGCTTATGTTTG 59.461 37.037 16.70 0.00 38.47 2.93
502 503 6.215845 AGCAAAGTTTGTAGCTTATGTTTGG 58.784 36.000 16.70 0.00 32.52 3.28
503 504 5.983118 GCAAAGTTTGTAGCTTATGTTTGGT 59.017 36.000 16.70 0.00 0.00 3.67
504 505 6.478673 GCAAAGTTTGTAGCTTATGTTTGGTT 59.521 34.615 16.70 0.00 0.00 3.67
505 506 7.516627 GCAAAGTTTGTAGCTTATGTTTGGTTG 60.517 37.037 16.70 0.00 0.00 3.77
506 507 6.709018 AGTTTGTAGCTTATGTTTGGTTGT 57.291 33.333 0.00 0.00 0.00 3.32
507 508 7.107639 AGTTTGTAGCTTATGTTTGGTTGTT 57.892 32.000 0.00 0.00 0.00 2.83
508 509 6.978080 AGTTTGTAGCTTATGTTTGGTTGTTG 59.022 34.615 0.00 0.00 0.00 3.33
509 510 6.458232 TTGTAGCTTATGTTTGGTTGTTGT 57.542 33.333 0.00 0.00 0.00 3.32
510 511 6.458232 TGTAGCTTATGTTTGGTTGTTGTT 57.542 33.333 0.00 0.00 0.00 2.83
511 512 6.868622 TGTAGCTTATGTTTGGTTGTTGTTT 58.131 32.000 0.00 0.00 0.00 2.83
512 513 7.324178 TGTAGCTTATGTTTGGTTGTTGTTTT 58.676 30.769 0.00 0.00 0.00 2.43
513 514 6.902224 AGCTTATGTTTGGTTGTTGTTTTC 57.098 33.333 0.00 0.00 0.00 2.29
514 515 6.402222 AGCTTATGTTTGGTTGTTGTTTTCA 58.598 32.000 0.00 0.00 0.00 2.69
515 516 7.047271 AGCTTATGTTTGGTTGTTGTTTTCAT 58.953 30.769 0.00 0.00 0.00 2.57
516 517 7.011295 AGCTTATGTTTGGTTGTTGTTTTCATG 59.989 33.333 0.00 0.00 0.00 3.07
517 518 7.201600 GCTTATGTTTGGTTGTTGTTTTCATGT 60.202 33.333 0.00 0.00 0.00 3.21
518 519 8.553459 TTATGTTTGGTTGTTGTTTTCATGTT 57.447 26.923 0.00 0.00 0.00 2.71
519 520 6.233430 TGTTTGGTTGTTGTTTTCATGTTG 57.767 33.333 0.00 0.00 0.00 3.33
520 521 4.935885 TTGGTTGTTGTTTTCATGTTGC 57.064 36.364 0.00 0.00 0.00 4.17
521 522 4.199432 TGGTTGTTGTTTTCATGTTGCT 57.801 36.364 0.00 0.00 0.00 3.91
522 523 4.573900 TGGTTGTTGTTTTCATGTTGCTT 58.426 34.783 0.00 0.00 0.00 3.91
523 524 5.724328 TGGTTGTTGTTTTCATGTTGCTTA 58.276 33.333 0.00 0.00 0.00 3.09
524 525 6.344500 TGGTTGTTGTTTTCATGTTGCTTAT 58.656 32.000 0.00 0.00 0.00 1.73
525 526 6.478344 TGGTTGTTGTTTTCATGTTGCTTATC 59.522 34.615 0.00 0.00 0.00 1.75
526 527 6.073819 GGTTGTTGTTTTCATGTTGCTTATCC 60.074 38.462 0.00 0.00 0.00 2.59
527 528 6.403866 TGTTGTTTTCATGTTGCTTATCCT 57.596 33.333 0.00 0.00 0.00 3.24
528 529 6.215121 TGTTGTTTTCATGTTGCTTATCCTG 58.785 36.000 0.00 0.00 0.00 3.86
529 530 5.389859 TGTTTTCATGTTGCTTATCCTGG 57.610 39.130 0.00 0.00 0.00 4.45
530 531 4.832266 TGTTTTCATGTTGCTTATCCTGGT 59.168 37.500 0.00 0.00 0.00 4.00
531 532 5.304101 TGTTTTCATGTTGCTTATCCTGGTT 59.696 36.000 0.00 0.00 0.00 3.67
532 533 6.183360 TGTTTTCATGTTGCTTATCCTGGTTT 60.183 34.615 0.00 0.00 0.00 3.27
533 534 5.643379 TTCATGTTGCTTATCCTGGTTTC 57.357 39.130 0.00 0.00 0.00 2.78
534 535 3.689161 TCATGTTGCTTATCCTGGTTTCG 59.311 43.478 0.00 0.00 0.00 3.46
535 536 1.810151 TGTTGCTTATCCTGGTTTCGC 59.190 47.619 0.00 0.00 0.00 4.70
536 537 1.132453 GTTGCTTATCCTGGTTTCGCC 59.868 52.381 0.00 0.00 37.90 5.54
537 538 0.742990 TGCTTATCCTGGTTTCGCCG 60.743 55.000 0.00 0.00 41.21 6.46
538 539 0.743345 GCTTATCCTGGTTTCGCCGT 60.743 55.000 0.00 0.00 41.21 5.68
539 540 1.287425 CTTATCCTGGTTTCGCCGTC 58.713 55.000 0.00 0.00 41.21 4.79
540 541 0.899720 TTATCCTGGTTTCGCCGTCT 59.100 50.000 0.00 0.00 41.21 4.18
541 542 0.458669 TATCCTGGTTTCGCCGTCTC 59.541 55.000 0.00 0.00 41.21 3.36
542 543 2.240162 ATCCTGGTTTCGCCGTCTCC 62.240 60.000 0.00 0.00 41.21 3.71
543 544 2.342279 CTGGTTTCGCCGTCTCCA 59.658 61.111 0.00 0.00 41.21 3.86
544 545 2.027625 CTGGTTTCGCCGTCTCCAC 61.028 63.158 0.00 0.00 41.21 4.02
545 546 2.741211 GGTTTCGCCGTCTCCACC 60.741 66.667 0.00 0.00 0.00 4.61
546 547 2.342648 GTTTCGCCGTCTCCACCT 59.657 61.111 0.00 0.00 0.00 4.00
547 548 1.737008 GTTTCGCCGTCTCCACCTC 60.737 63.158 0.00 0.00 0.00 3.85
548 549 2.204461 TTTCGCCGTCTCCACCTCA 61.204 57.895 0.00 0.00 0.00 3.86
549 550 1.750341 TTTCGCCGTCTCCACCTCAA 61.750 55.000 0.00 0.00 0.00 3.02
550 551 2.430382 TTCGCCGTCTCCACCTCAAC 62.430 60.000 0.00 0.00 0.00 3.18
551 552 2.932234 CGCCGTCTCCACCTCAACT 61.932 63.158 0.00 0.00 0.00 3.16
552 553 1.374758 GCCGTCTCCACCTCAACTG 60.375 63.158 0.00 0.00 0.00 3.16
553 554 1.293498 CCGTCTCCACCTCAACTGG 59.707 63.158 0.00 0.00 0.00 4.00
554 555 1.185618 CCGTCTCCACCTCAACTGGA 61.186 60.000 0.00 0.00 36.34 3.86
555 556 0.898320 CGTCTCCACCTCAACTGGAT 59.102 55.000 0.00 0.00 37.18 3.41
556 557 1.134965 CGTCTCCACCTCAACTGGATC 60.135 57.143 0.00 0.00 37.18 3.36
557 558 1.134965 GTCTCCACCTCAACTGGATCG 60.135 57.143 0.00 0.00 37.18 3.69
558 559 0.898320 CTCCACCTCAACTGGATCGT 59.102 55.000 0.00 0.00 37.18 3.73
559 560 0.895530 TCCACCTCAACTGGATCGTC 59.104 55.000 0.00 0.00 32.52 4.20
560 561 0.898320 CCACCTCAACTGGATCGTCT 59.102 55.000 0.00 0.00 0.00 4.18
561 562 1.276421 CCACCTCAACTGGATCGTCTT 59.724 52.381 0.00 0.00 0.00 3.01
562 563 2.611518 CACCTCAACTGGATCGTCTTC 58.388 52.381 0.00 0.00 0.00 2.87
563 564 1.550976 ACCTCAACTGGATCGTCTTCC 59.449 52.381 0.00 0.00 36.24 3.46
564 565 1.550524 CCTCAACTGGATCGTCTTCCA 59.449 52.381 4.81 4.81 43.56 3.53
565 566 2.611518 CTCAACTGGATCGTCTTCCAC 58.388 52.381 1.25 0.00 40.90 4.02
566 567 1.275291 TCAACTGGATCGTCTTCCACC 59.725 52.381 1.25 0.00 40.90 4.61
567 568 1.276421 CAACTGGATCGTCTTCCACCT 59.724 52.381 1.25 0.00 40.90 4.00
568 569 1.187087 ACTGGATCGTCTTCCACCTC 58.813 55.000 1.25 0.00 40.90 3.85
569 570 1.272760 ACTGGATCGTCTTCCACCTCT 60.273 52.381 1.25 0.00 40.90 3.69
570 571 1.135915 CTGGATCGTCTTCCACCTCTG 59.864 57.143 1.25 0.00 40.90 3.35
571 572 0.179097 GGATCGTCTTCCACCTCTGC 60.179 60.000 0.00 0.00 35.72 4.26
572 573 0.179097 GATCGTCTTCCACCTCTGCC 60.179 60.000 0.00 0.00 0.00 4.85
573 574 1.617947 ATCGTCTTCCACCTCTGCCC 61.618 60.000 0.00 0.00 0.00 5.36
574 575 2.583441 CGTCTTCCACCTCTGCCCA 61.583 63.158 0.00 0.00 0.00 5.36
575 576 1.298014 GTCTTCCACCTCTGCCCAG 59.702 63.158 0.00 0.00 0.00 4.45
576 577 2.045536 CTTCCACCTCTGCCCAGC 60.046 66.667 0.00 0.00 0.00 4.85
577 578 2.853542 TTCCACCTCTGCCCAGCA 60.854 61.111 0.00 0.00 36.92 4.41
578 579 3.196207 TTCCACCTCTGCCCAGCAC 62.196 63.158 0.00 0.00 33.79 4.40
579 580 3.957586 CCACCTCTGCCCAGCACA 61.958 66.667 0.00 0.00 33.79 4.57
580 581 2.113774 CACCTCTGCCCAGCACAA 59.886 61.111 0.00 0.00 33.79 3.33
581 582 1.970114 CACCTCTGCCCAGCACAAG 60.970 63.158 0.00 0.00 33.79 3.16
582 583 2.360852 CCTCTGCCCAGCACAAGG 60.361 66.667 0.00 0.28 33.79 3.61
583 584 2.752358 CTCTGCCCAGCACAAGGA 59.248 61.111 0.00 0.00 33.79 3.36
584 585 1.376942 CTCTGCCCAGCACAAGGAG 60.377 63.158 0.00 0.00 33.79 3.69
585 586 2.121992 CTCTGCCCAGCACAAGGAGT 62.122 60.000 0.00 0.00 33.79 3.85
586 587 1.673665 CTGCCCAGCACAAGGAGTC 60.674 63.158 0.00 0.00 33.79 3.36
587 588 2.121992 CTGCCCAGCACAAGGAGTCT 62.122 60.000 0.00 0.00 33.79 3.24
588 589 1.376553 GCCCAGCACAAGGAGTCTC 60.377 63.158 0.00 0.00 0.00 3.36
589 590 1.298014 CCCAGCACAAGGAGTCTCC 59.702 63.158 11.31 11.31 36.58 3.71
602 603 3.467374 GAGTCTCCTCCCATTCATCAC 57.533 52.381 0.00 0.00 0.00 3.06
603 604 1.759445 AGTCTCCTCCCATTCATCACG 59.241 52.381 0.00 0.00 0.00 4.35
604 605 0.465705 TCTCCTCCCATTCATCACGC 59.534 55.000 0.00 0.00 0.00 5.34
605 606 0.178767 CTCCTCCCATTCATCACGCA 59.821 55.000 0.00 0.00 0.00 5.24
606 607 0.617935 TCCTCCCATTCATCACGCAA 59.382 50.000 0.00 0.00 0.00 4.85
607 608 0.734889 CCTCCCATTCATCACGCAAC 59.265 55.000 0.00 0.00 0.00 4.17
608 609 0.734889 CTCCCATTCATCACGCAACC 59.265 55.000 0.00 0.00 0.00 3.77
609 610 0.037447 TCCCATTCATCACGCAACCA 59.963 50.000 0.00 0.00 0.00 3.67
610 611 0.887247 CCCATTCATCACGCAACCAA 59.113 50.000 0.00 0.00 0.00 3.67
611 612 1.135315 CCCATTCATCACGCAACCAAG 60.135 52.381 0.00 0.00 0.00 3.61
612 613 1.541147 CCATTCATCACGCAACCAAGT 59.459 47.619 0.00 0.00 0.00 3.16
613 614 2.414559 CCATTCATCACGCAACCAAGTC 60.415 50.000 0.00 0.00 0.00 3.01
614 615 1.960417 TTCATCACGCAACCAAGTCA 58.040 45.000 0.00 0.00 0.00 3.41
615 616 1.960417 TCATCACGCAACCAAGTCAA 58.040 45.000 0.00 0.00 0.00 3.18
616 617 2.293170 TCATCACGCAACCAAGTCAAA 58.707 42.857 0.00 0.00 0.00 2.69
617 618 2.290367 TCATCACGCAACCAAGTCAAAG 59.710 45.455 0.00 0.00 0.00 2.77
618 619 2.031258 TCACGCAACCAAGTCAAAGA 57.969 45.000 0.00 0.00 0.00 2.52
619 620 2.360844 TCACGCAACCAAGTCAAAGAA 58.639 42.857 0.00 0.00 0.00 2.52
620 621 2.750166 TCACGCAACCAAGTCAAAGAAA 59.250 40.909 0.00 0.00 0.00 2.52
621 622 3.191581 TCACGCAACCAAGTCAAAGAAAA 59.808 39.130 0.00 0.00 0.00 2.29
622 623 3.303229 CACGCAACCAAGTCAAAGAAAAC 59.697 43.478 0.00 0.00 0.00 2.43
623 624 2.529894 CGCAACCAAGTCAAAGAAAACG 59.470 45.455 0.00 0.00 0.00 3.60
624 625 2.857748 GCAACCAAGTCAAAGAAAACGG 59.142 45.455 0.00 0.00 0.00 4.44
625 626 3.443976 CAACCAAGTCAAAGAAAACGGG 58.556 45.455 0.00 0.00 0.00 5.28
626 627 3.007473 ACCAAGTCAAAGAAAACGGGA 57.993 42.857 0.00 0.00 0.00 5.14
627 628 2.686405 ACCAAGTCAAAGAAAACGGGAC 59.314 45.455 0.00 0.00 0.00 4.46
640 641 2.045143 GGGACGACGAGGACCTCT 60.045 66.667 19.39 6.55 0.00 3.69
641 642 2.114051 GGGACGACGAGGACCTCTC 61.114 68.421 19.39 13.81 39.10 3.20
642 643 1.376942 GGACGACGAGGACCTCTCA 60.377 63.158 19.39 0.00 42.55 3.27
643 644 1.646624 GGACGACGAGGACCTCTCAC 61.647 65.000 19.39 9.19 42.55 3.51
644 645 0.954449 GACGACGAGGACCTCTCACA 60.954 60.000 19.39 0.00 42.55 3.58
645 646 0.536687 ACGACGAGGACCTCTCACAA 60.537 55.000 19.39 0.00 42.55 3.33
646 647 0.169230 CGACGAGGACCTCTCACAAG 59.831 60.000 19.39 5.18 42.55 3.16
647 648 0.528470 GACGAGGACCTCTCACAAGG 59.472 60.000 19.39 4.46 42.55 3.61
648 649 0.900647 ACGAGGACCTCTCACAAGGG 60.901 60.000 19.39 3.74 42.55 3.95
649 650 0.900647 CGAGGACCTCTCACAAGGGT 60.901 60.000 19.39 0.00 42.55 4.34
650 651 0.899019 GAGGACCTCTCACAAGGGTC 59.101 60.000 14.72 0.00 46.14 4.46
689 694 4.783621 TCTGCGGCATGCTCCACC 62.784 66.667 18.92 0.00 46.63 4.61
700 705 2.755469 CTCCACCCATTTGGCCCG 60.755 66.667 0.00 0.00 37.83 6.13
704 709 1.682005 CACCCATTTGGCCCGTCAT 60.682 57.895 0.00 0.00 37.83 3.06
742 747 2.202492 GACTCGTCGTCATGCGCT 60.202 61.111 9.73 0.00 42.37 5.92
915 931 1.043816 CTCACTCACCACTCACCACT 58.956 55.000 0.00 0.00 0.00 4.00
916 932 1.000283 CTCACTCACCACTCACCACTC 60.000 57.143 0.00 0.00 0.00 3.51
917 933 0.752658 CACTCACCACTCACCACTCA 59.247 55.000 0.00 0.00 0.00 3.41
918 934 0.753262 ACTCACCACTCACCACTCAC 59.247 55.000 0.00 0.00 0.00 3.51
919 935 0.752658 CTCACCACTCACCACTCACA 59.247 55.000 0.00 0.00 0.00 3.58
920 936 0.464036 TCACCACTCACCACTCACAC 59.536 55.000 0.00 0.00 0.00 3.82
921 937 0.875908 CACCACTCACCACTCACACG 60.876 60.000 0.00 0.00 0.00 4.49
922 938 1.300931 CCACTCACCACTCACACGG 60.301 63.158 0.00 0.00 0.00 4.94
923 939 1.739667 CACTCACCACTCACACGGA 59.260 57.895 0.00 0.00 0.00 4.69
950 997 3.947910 TTATTCACGACCGAAAGACCT 57.052 42.857 0.00 0.00 0.00 3.85
951 998 2.080286 ATTCACGACCGAAAGACCTG 57.920 50.000 0.00 0.00 0.00 4.00
952 999 0.032952 TTCACGACCGAAAGACCTGG 59.967 55.000 0.00 0.00 0.00 4.45
953 1000 1.111116 TCACGACCGAAAGACCTGGT 61.111 55.000 0.00 0.00 39.12 4.00
954 1001 0.599558 CACGACCGAAAGACCTGGTA 59.400 55.000 0.00 0.00 35.75 3.25
955 1002 0.886563 ACGACCGAAAGACCTGGTAG 59.113 55.000 0.00 0.00 35.75 3.18
956 1003 0.458025 CGACCGAAAGACCTGGTAGC 60.458 60.000 0.00 0.00 35.75 3.58
957 1004 0.896226 GACCGAAAGACCTGGTAGCT 59.104 55.000 0.00 0.00 35.75 3.32
958 1005 0.608640 ACCGAAAGACCTGGTAGCTG 59.391 55.000 0.00 0.00 33.25 4.24
959 1006 0.108138 CCGAAAGACCTGGTAGCTGG 60.108 60.000 15.56 15.56 0.00 4.85
960 1007 0.608640 CGAAAGACCTGGTAGCTGGT 59.391 55.000 21.85 21.85 39.60 4.00
961 1008 1.822990 CGAAAGACCTGGTAGCTGGTA 59.177 52.381 21.74 0.00 36.59 3.25
962 1009 2.159226 CGAAAGACCTGGTAGCTGGTAG 60.159 54.545 21.74 8.84 36.59 3.18
963 1010 2.625282 AAGACCTGGTAGCTGGTAGT 57.375 50.000 21.74 10.76 36.59 2.73
964 1011 3.752359 AAGACCTGGTAGCTGGTAGTA 57.248 47.619 21.74 0.00 36.59 1.82
965 1012 3.015675 AGACCTGGTAGCTGGTAGTAC 57.984 52.381 21.74 10.64 36.59 2.73
966 1013 2.310945 AGACCTGGTAGCTGGTAGTACA 59.689 50.000 21.74 0.00 36.59 2.90
967 1014 3.094572 GACCTGGTAGCTGGTAGTACAA 58.905 50.000 21.74 0.00 36.59 2.41
968 1015 2.830321 ACCTGGTAGCTGGTAGTACAAC 59.170 50.000 20.56 0.00 34.36 3.32
969 1016 2.829720 CCTGGTAGCTGGTAGTACAACA 59.170 50.000 9.54 0.00 0.00 3.33
970 1017 3.259876 CCTGGTAGCTGGTAGTACAACAA 59.740 47.826 9.54 0.00 0.00 2.83
971 1018 4.495422 CTGGTAGCTGGTAGTACAACAAG 58.505 47.826 0.00 0.00 0.00 3.16
972 1019 4.154176 TGGTAGCTGGTAGTACAACAAGA 58.846 43.478 0.00 0.00 0.00 3.02
973 1020 4.021719 TGGTAGCTGGTAGTACAACAAGAC 60.022 45.833 0.00 0.00 0.00 3.01
974 1021 4.021719 GGTAGCTGGTAGTACAACAAGACA 60.022 45.833 0.00 0.00 0.00 3.41
975 1022 3.991367 AGCTGGTAGTACAACAAGACAC 58.009 45.455 2.06 0.00 0.00 3.67
976 1023 3.064931 GCTGGTAGTACAACAAGACACC 58.935 50.000 2.06 0.00 0.00 4.16
977 1024 3.314553 CTGGTAGTACAACAAGACACCG 58.685 50.000 2.06 0.00 0.00 4.94
978 1025 2.957680 TGGTAGTACAACAAGACACCGA 59.042 45.455 2.06 0.00 0.00 4.69
979 1026 3.243501 TGGTAGTACAACAAGACACCGAC 60.244 47.826 2.06 0.00 0.00 4.79
980 1027 3.243501 GGTAGTACAACAAGACACCGACA 60.244 47.826 2.06 0.00 0.00 4.35
981 1028 2.817901 AGTACAACAAGACACCGACAC 58.182 47.619 0.00 0.00 0.00 3.67
1074 1122 3.567797 GGCGCTGCGTTCATCTCC 61.568 66.667 24.04 10.31 0.00 3.71
1098 1146 2.225467 GCCATATTCCTGCTGTTCCTC 58.775 52.381 0.00 0.00 0.00 3.71
1142 1190 1.275291 CCTCCGCCACTCTTACTTCAA 59.725 52.381 0.00 0.00 0.00 2.69
1810 1905 3.573491 GCGCCTAAAATCGCCGCT 61.573 61.111 0.00 0.00 45.01 5.52
1940 2080 9.512435 GTTCGGCATATATTACATAATAGTCGT 57.488 33.333 0.00 0.00 32.24 4.34
2141 2311 1.506718 GTCGCTGTCCTCGATGACA 59.493 57.895 20.29 20.29 42.75 3.58
2749 6105 3.037549 CTGGAATAGGAGCCAAGACTCT 58.962 50.000 0.00 0.00 36.87 3.24
2799 6156 3.532155 GACCGCCGCCTCATCTCT 61.532 66.667 0.00 0.00 0.00 3.10
2800 6157 3.781770 GACCGCCGCCTCATCTCTG 62.782 68.421 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.135315 CGCATCCGACCAAAGCAAG 59.865 57.895 0.00 0.00 36.29 4.01
1 2 2.976840 GCGCATCCGACCAAAGCAA 61.977 57.895 0.30 0.00 36.29 3.91
2 3 3.430862 GCGCATCCGACCAAAGCA 61.431 61.111 0.30 0.00 36.29 3.91
4 5 4.520846 GCGCGCATCCGACCAAAG 62.521 66.667 29.10 0.00 36.29 2.77
12 13 3.344215 CTCATCTGGCGCGCATCC 61.344 66.667 34.42 16.64 0.00 3.51
13 14 2.098842 GAACTCATCTGGCGCGCATC 62.099 60.000 34.42 17.47 0.00 3.91
14 15 2.124983 AACTCATCTGGCGCGCAT 60.125 55.556 34.42 15.69 0.00 4.73
15 16 2.815211 GAACTCATCTGGCGCGCA 60.815 61.111 34.42 17.93 0.00 6.09
16 17 3.918220 CGAACTCATCTGGCGCGC 61.918 66.667 25.94 25.94 0.00 6.86
17 18 2.507102 ACGAACTCATCTGGCGCG 60.507 61.111 0.00 0.00 0.00 6.86
18 19 3.084579 CACGAACTCATCTGGCGC 58.915 61.111 0.00 0.00 0.00 6.53
19 20 2.792290 CGCACGAACTCATCTGGCG 61.792 63.158 0.00 0.00 40.25 5.69
20 21 1.738099 ACGCACGAACTCATCTGGC 60.738 57.895 0.00 0.00 0.00 4.85
21 22 0.667487 ACACGCACGAACTCATCTGG 60.667 55.000 0.00 0.00 0.00 3.86
22 23 1.139989 AACACGCACGAACTCATCTG 58.860 50.000 0.00 0.00 0.00 2.90
23 24 1.865865 AAACACGCACGAACTCATCT 58.134 45.000 0.00 0.00 0.00 2.90
24 25 3.991605 ATAAACACGCACGAACTCATC 57.008 42.857 0.00 0.00 0.00 2.92
25 26 4.451096 AGAAATAAACACGCACGAACTCAT 59.549 37.500 0.00 0.00 0.00 2.90
26 27 3.805422 AGAAATAAACACGCACGAACTCA 59.195 39.130 0.00 0.00 0.00 3.41
27 28 4.150098 AGAGAAATAAACACGCACGAACTC 59.850 41.667 0.00 0.00 0.00 3.01
28 29 4.056050 AGAGAAATAAACACGCACGAACT 58.944 39.130 0.00 0.00 0.00 3.01
29 30 4.141680 CAGAGAAATAAACACGCACGAAC 58.858 43.478 0.00 0.00 0.00 3.95
30 31 3.363575 GCAGAGAAATAAACACGCACGAA 60.364 43.478 0.00 0.00 0.00 3.85
31 32 2.156891 GCAGAGAAATAAACACGCACGA 59.843 45.455 0.00 0.00 0.00 4.35
32 33 2.096466 TGCAGAGAAATAAACACGCACG 60.096 45.455 0.00 0.00 0.00 5.34
33 34 3.536158 TGCAGAGAAATAAACACGCAC 57.464 42.857 0.00 0.00 0.00 5.34
34 35 3.501828 ACATGCAGAGAAATAAACACGCA 59.498 39.130 0.00 0.00 0.00 5.24
35 36 4.083581 ACATGCAGAGAAATAAACACGC 57.916 40.909 0.00 0.00 0.00 5.34
36 37 4.853196 CCAACATGCAGAGAAATAAACACG 59.147 41.667 0.00 0.00 0.00 4.49
37 38 5.163513 CCCAACATGCAGAGAAATAAACAC 58.836 41.667 0.00 0.00 0.00 3.32
38 39 4.832266 ACCCAACATGCAGAGAAATAAACA 59.168 37.500 0.00 0.00 0.00 2.83
39 40 5.391312 ACCCAACATGCAGAGAAATAAAC 57.609 39.130 0.00 0.00 0.00 2.01
40 41 6.041409 TCAAACCCAACATGCAGAGAAATAAA 59.959 34.615 0.00 0.00 0.00 1.40
41 42 5.538053 TCAAACCCAACATGCAGAGAAATAA 59.462 36.000 0.00 0.00 0.00 1.40
42 43 5.076182 TCAAACCCAACATGCAGAGAAATA 58.924 37.500 0.00 0.00 0.00 1.40
43 44 3.896888 TCAAACCCAACATGCAGAGAAAT 59.103 39.130 0.00 0.00 0.00 2.17
44 45 3.295093 TCAAACCCAACATGCAGAGAAA 58.705 40.909 0.00 0.00 0.00 2.52
45 46 2.942804 TCAAACCCAACATGCAGAGAA 58.057 42.857 0.00 0.00 0.00 2.87
46 47 2.655090 TCAAACCCAACATGCAGAGA 57.345 45.000 0.00 0.00 0.00 3.10
47 48 2.094390 CCATCAAACCCAACATGCAGAG 60.094 50.000 0.00 0.00 0.00 3.35
48 49 1.894466 CCATCAAACCCAACATGCAGA 59.106 47.619 0.00 0.00 0.00 4.26
49 50 1.894466 TCCATCAAACCCAACATGCAG 59.106 47.619 0.00 0.00 0.00 4.41
50 51 1.894466 CTCCATCAAACCCAACATGCA 59.106 47.619 0.00 0.00 0.00 3.96
51 52 1.205417 CCTCCATCAAACCCAACATGC 59.795 52.381 0.00 0.00 0.00 4.06
52 53 1.826720 CCCTCCATCAAACCCAACATG 59.173 52.381 0.00 0.00 0.00 3.21
53 54 1.715931 TCCCTCCATCAAACCCAACAT 59.284 47.619 0.00 0.00 0.00 2.71
54 55 1.153539 TCCCTCCATCAAACCCAACA 58.846 50.000 0.00 0.00 0.00 3.33
55 56 1.893137 GTTCCCTCCATCAAACCCAAC 59.107 52.381 0.00 0.00 0.00 3.77
56 57 1.203125 GGTTCCCTCCATCAAACCCAA 60.203 52.381 0.00 0.00 36.06 4.12
57 58 0.407918 GGTTCCCTCCATCAAACCCA 59.592 55.000 0.00 0.00 36.06 4.51
58 59 0.679960 CGGTTCCCTCCATCAAACCC 60.680 60.000 0.00 0.00 38.32 4.11
59 60 0.037734 ACGGTTCCCTCCATCAAACC 59.962 55.000 0.00 0.00 38.22 3.27
60 61 1.165270 CACGGTTCCCTCCATCAAAC 58.835 55.000 0.00 0.00 0.00 2.93
61 62 0.037590 CCACGGTTCCCTCCATCAAA 59.962 55.000 0.00 0.00 0.00 2.69
62 63 0.838554 TCCACGGTTCCCTCCATCAA 60.839 55.000 0.00 0.00 0.00 2.57
63 64 1.229368 TCCACGGTTCCCTCCATCA 60.229 57.895 0.00 0.00 0.00 3.07
64 65 1.265454 ACTCCACGGTTCCCTCCATC 61.265 60.000 0.00 0.00 0.00 3.51
65 66 1.229529 ACTCCACGGTTCCCTCCAT 60.230 57.895 0.00 0.00 0.00 3.41
66 67 2.203182 ACTCCACGGTTCCCTCCA 59.797 61.111 0.00 0.00 0.00 3.86
67 68 2.663196 CACTCCACGGTTCCCTCC 59.337 66.667 0.00 0.00 0.00 4.30
68 69 2.047179 GCACTCCACGGTTCCCTC 60.047 66.667 0.00 0.00 0.00 4.30
69 70 4.003788 CGCACTCCACGGTTCCCT 62.004 66.667 0.00 0.00 0.00 4.20
70 71 3.819877 AACGCACTCCACGGTTCCC 62.820 63.158 0.00 0.00 34.00 3.97
71 72 2.280592 AACGCACTCCACGGTTCC 60.281 61.111 0.00 0.00 34.00 3.62
72 73 2.654912 CGAACGCACTCCACGGTTC 61.655 63.158 0.00 0.00 34.00 3.62
73 74 2.660552 CGAACGCACTCCACGGTT 60.661 61.111 0.00 0.00 34.00 4.44
74 75 3.836176 GACGAACGCACTCCACGGT 62.836 63.158 0.00 0.00 34.00 4.83
75 76 3.103911 GACGAACGCACTCCACGG 61.104 66.667 0.00 0.00 34.00 4.94
76 77 3.458579 CGACGAACGCACTCCACG 61.459 66.667 0.00 0.00 34.51 4.94
77 78 3.103911 CCGACGAACGCACTCCAC 61.104 66.667 0.00 0.00 41.07 4.02
78 79 3.141522 AACCGACGAACGCACTCCA 62.142 57.895 0.00 0.00 41.07 3.86
79 80 2.355481 AACCGACGAACGCACTCC 60.355 61.111 0.00 0.00 41.07 3.85
80 81 2.654912 CCAACCGACGAACGCACTC 61.655 63.158 0.00 0.00 41.07 3.51
81 82 2.660552 CCAACCGACGAACGCACT 60.661 61.111 0.00 0.00 41.07 4.40
82 83 2.039062 AAACCAACCGACGAACGCAC 62.039 55.000 0.00 0.00 41.07 5.34
83 84 0.529337 TAAACCAACCGACGAACGCA 60.529 50.000 0.00 0.00 41.07 5.24
84 85 0.792031 ATAAACCAACCGACGAACGC 59.208 50.000 0.00 0.00 41.07 4.84
85 86 4.644044 TTAATAAACCAACCGACGAACG 57.356 40.909 0.00 0.00 42.18 3.95
86 87 5.989249 AGTTTAATAAACCAACCGACGAAC 58.011 37.500 11.83 0.00 42.34 3.95
87 88 6.259608 TGAAGTTTAATAAACCAACCGACGAA 59.740 34.615 11.83 0.00 42.34 3.85
88 89 5.757320 TGAAGTTTAATAAACCAACCGACGA 59.243 36.000 11.83 0.00 42.34 4.20
89 90 5.988092 TGAAGTTTAATAAACCAACCGACG 58.012 37.500 11.83 0.00 42.34 5.12
90 91 7.916977 AGTTTGAAGTTTAATAAACCAACCGAC 59.083 33.333 11.83 6.29 42.34 4.79
91 92 7.998580 AGTTTGAAGTTTAATAAACCAACCGA 58.001 30.769 11.83 0.00 42.34 4.69
92 93 8.637281 AAGTTTGAAGTTTAATAAACCAACCG 57.363 30.769 11.83 0.00 42.34 4.44
93 94 9.589111 TGAAGTTTGAAGTTTAATAAACCAACC 57.411 29.630 11.83 3.92 42.34 3.77
122 123 8.534496 CCTCAAGGTTTTTCCATATCAAAAGAT 58.466 33.333 0.00 0.00 39.02 2.40
123 124 7.895759 CCTCAAGGTTTTTCCATATCAAAAGA 58.104 34.615 0.00 0.00 39.02 2.52
147 148 5.526846 TGTTCAATTTGCAAAAGGAATCACC 59.473 36.000 23.32 14.92 39.35 4.02
148 149 6.601741 TGTTCAATTTGCAAAAGGAATCAC 57.398 33.333 23.32 15.80 0.00 3.06
149 150 9.153721 GATATGTTCAATTTGCAAAAGGAATCA 57.846 29.630 23.32 21.52 0.00 2.57
150 151 9.153721 TGATATGTTCAATTTGCAAAAGGAATC 57.846 29.630 23.32 18.50 0.00 2.52
151 152 9.504708 TTGATATGTTCAATTTGCAAAAGGAAT 57.495 25.926 23.32 15.10 39.44 3.01
152 153 8.899427 TTGATATGTTCAATTTGCAAAAGGAA 57.101 26.923 17.19 18.41 39.44 3.36
153 154 8.899427 TTTGATATGTTCAATTTGCAAAAGGA 57.101 26.923 17.19 13.52 43.73 3.36
158 159 8.444715 GCAGATTTTGATATGTTCAATTTGCAA 58.555 29.630 0.00 0.00 43.73 4.08
159 160 7.603024 TGCAGATTTTGATATGTTCAATTTGCA 59.397 29.630 4.75 4.75 43.73 4.08
160 161 7.966111 TGCAGATTTTGATATGTTCAATTTGC 58.034 30.769 0.00 0.00 43.73 3.68
165 166 9.577110 GAAGAATGCAGATTTTGATATGTTCAA 57.423 29.630 0.00 0.00 42.62 2.69
166 167 8.741841 TGAAGAATGCAGATTTTGATATGTTCA 58.258 29.630 0.00 0.00 0.00 3.18
167 168 9.745880 ATGAAGAATGCAGATTTTGATATGTTC 57.254 29.630 0.00 0.00 0.00 3.18
168 169 9.529325 CATGAAGAATGCAGATTTTGATATGTT 57.471 29.630 0.00 0.00 0.00 2.71
169 170 8.692710 ACATGAAGAATGCAGATTTTGATATGT 58.307 29.630 0.00 0.00 40.22 2.29
228 229 9.476202 GGCTCAAGTTAACATTTTAGTTTGATT 57.524 29.630 8.61 0.00 33.07 2.57
229 230 8.860088 AGGCTCAAGTTAACATTTTAGTTTGAT 58.140 29.630 8.61 0.00 33.07 2.57
230 231 8.232913 AGGCTCAAGTTAACATTTTAGTTTGA 57.767 30.769 8.61 5.55 33.07 2.69
231 232 8.871686 AAGGCTCAAGTTAACATTTTAGTTTG 57.128 30.769 8.61 1.22 33.07 2.93
237 238 8.306761 CCAGAATAAGGCTCAAGTTAACATTTT 58.693 33.333 8.61 0.00 0.00 1.82
238 239 7.830739 CCAGAATAAGGCTCAAGTTAACATTT 58.169 34.615 8.61 0.00 0.00 2.32
239 240 7.396540 CCAGAATAAGGCTCAAGTTAACATT 57.603 36.000 8.61 0.00 0.00 2.71
252 253 7.108847 ATCACAAGATATAGCCAGAATAAGGC 58.891 38.462 0.00 0.00 41.85 4.35
253 254 7.768120 GGATCACAAGATATAGCCAGAATAAGG 59.232 40.741 0.00 0.00 33.72 2.69
254 255 8.316946 TGGATCACAAGATATAGCCAGAATAAG 58.683 37.037 0.00 0.00 33.72 1.73
255 256 8.206126 TGGATCACAAGATATAGCCAGAATAA 57.794 34.615 0.00 0.00 33.72 1.40
256 257 7.797121 TGGATCACAAGATATAGCCAGAATA 57.203 36.000 0.00 0.00 33.72 1.75
257 258 6.692849 TGGATCACAAGATATAGCCAGAAT 57.307 37.500 0.00 0.00 33.72 2.40
258 259 6.043590 ACATGGATCACAAGATATAGCCAGAA 59.956 38.462 0.00 0.00 33.72 3.02
259 260 5.545335 ACATGGATCACAAGATATAGCCAGA 59.455 40.000 0.00 0.00 33.72 3.86
260 261 5.802465 ACATGGATCACAAGATATAGCCAG 58.198 41.667 0.00 0.00 33.72 4.85
261 262 5.830799 ACATGGATCACAAGATATAGCCA 57.169 39.130 0.00 0.00 33.72 4.75
269 270 9.330063 GTTTCAGATATAACATGGATCACAAGA 57.670 33.333 0.00 0.00 0.00 3.02
270 271 8.562892 GGTTTCAGATATAACATGGATCACAAG 58.437 37.037 0.00 0.00 0.00 3.16
271 272 8.274322 AGGTTTCAGATATAACATGGATCACAA 58.726 33.333 0.00 0.00 0.00 3.33
272 273 7.805163 AGGTTTCAGATATAACATGGATCACA 58.195 34.615 0.00 0.00 0.00 3.58
273 274 9.950496 ATAGGTTTCAGATATAACATGGATCAC 57.050 33.333 0.00 0.00 0.00 3.06
288 289 9.859427 CAATATGCAAAAAGAATAGGTTTCAGA 57.141 29.630 0.00 0.00 0.00 3.27
289 290 9.859427 TCAATATGCAAAAAGAATAGGTTTCAG 57.141 29.630 0.00 0.00 0.00 3.02
290 291 9.859427 CTCAATATGCAAAAAGAATAGGTTTCA 57.141 29.630 0.00 0.00 0.00 2.69
291 292 9.860898 ACTCAATATGCAAAAAGAATAGGTTTC 57.139 29.630 0.00 0.00 0.00 2.78
292 293 9.860898 GACTCAATATGCAAAAAGAATAGGTTT 57.139 29.630 0.00 0.00 0.00 3.27
293 294 8.184192 CGACTCAATATGCAAAAAGAATAGGTT 58.816 33.333 0.00 0.00 0.00 3.50
294 295 7.336931 ACGACTCAATATGCAAAAAGAATAGGT 59.663 33.333 0.00 0.00 0.00 3.08
295 296 7.697691 ACGACTCAATATGCAAAAAGAATAGG 58.302 34.615 0.00 0.00 0.00 2.57
296 297 9.214953 GAACGACTCAATATGCAAAAAGAATAG 57.785 33.333 0.00 0.00 0.00 1.73
297 298 8.726068 TGAACGACTCAATATGCAAAAAGAATA 58.274 29.630 0.00 0.00 0.00 1.75
298 299 7.592938 TGAACGACTCAATATGCAAAAAGAAT 58.407 30.769 0.00 0.00 0.00 2.40
299 300 6.964908 TGAACGACTCAATATGCAAAAAGAA 58.035 32.000 0.00 0.00 0.00 2.52
300 301 6.552859 TGAACGACTCAATATGCAAAAAGA 57.447 33.333 0.00 0.00 0.00 2.52
301 302 6.636447 TGTTGAACGACTCAATATGCAAAAAG 59.364 34.615 7.73 0.00 45.74 2.27
302 303 6.416455 GTGTTGAACGACTCAATATGCAAAAA 59.584 34.615 7.73 0.00 45.74 1.94
303 304 5.912396 GTGTTGAACGACTCAATATGCAAAA 59.088 36.000 7.73 0.00 45.74 2.44
304 305 5.008118 TGTGTTGAACGACTCAATATGCAAA 59.992 36.000 7.73 0.00 45.74 3.68
305 306 4.513318 TGTGTTGAACGACTCAATATGCAA 59.487 37.500 7.73 0.00 45.74 4.08
306 307 4.061596 TGTGTTGAACGACTCAATATGCA 58.938 39.130 7.73 0.00 45.74 3.96
307 308 4.661993 TGTGTTGAACGACTCAATATGC 57.338 40.909 7.73 0.00 45.74 3.14
308 309 7.525688 AGTATGTGTTGAACGACTCAATATG 57.474 36.000 7.73 0.00 45.74 1.78
309 310 8.547967 AAAGTATGTGTTGAACGACTCAATAT 57.452 30.769 7.73 6.40 45.74 1.28
310 311 7.956420 AAAGTATGTGTTGAACGACTCAATA 57.044 32.000 7.73 3.41 45.74 1.90
311 312 6.861065 AAAGTATGTGTTGAACGACTCAAT 57.139 33.333 7.73 0.00 45.74 2.57
312 313 6.671614 AAAAGTATGTGTTGAACGACTCAA 57.328 33.333 0.00 0.00 41.93 3.02
313 314 6.671614 AAAAAGTATGTGTTGAACGACTCA 57.328 33.333 0.00 0.00 29.63 3.41
338 339 9.520515 TTCATTCAAACCTAATCTTAAAGCTCT 57.479 29.630 0.00 0.00 0.00 4.09
407 408 7.913674 ACTTTGAAAGATATGAGTGGAAGTC 57.086 36.000 12.53 0.00 36.61 3.01
408 409 9.793259 TTTACTTTGAAAGATATGAGTGGAAGT 57.207 29.630 12.53 0.00 0.00 3.01
451 452 9.838339 AGGAACAATCTTCATTCGATATTAAGT 57.162 29.630 0.00 0.00 0.00 2.24
454 455 9.424319 GCTAGGAACAATCTTCATTCGATATTA 57.576 33.333 0.00 0.00 0.00 0.98
455 456 7.933577 TGCTAGGAACAATCTTCATTCGATATT 59.066 33.333 0.00 0.00 0.00 1.28
456 457 7.445121 TGCTAGGAACAATCTTCATTCGATAT 58.555 34.615 0.00 0.00 0.00 1.63
457 458 6.816136 TGCTAGGAACAATCTTCATTCGATA 58.184 36.000 0.00 0.00 0.00 2.92
458 459 5.674525 TGCTAGGAACAATCTTCATTCGAT 58.325 37.500 0.00 0.00 0.00 3.59
459 460 5.084818 TGCTAGGAACAATCTTCATTCGA 57.915 39.130 0.00 0.00 0.00 3.71
460 461 5.801350 TTGCTAGGAACAATCTTCATTCG 57.199 39.130 0.00 0.00 0.00 3.34
461 462 7.150783 ACTTTGCTAGGAACAATCTTCATTC 57.849 36.000 0.00 0.00 0.00 2.67
462 463 7.530426 AACTTTGCTAGGAACAATCTTCATT 57.470 32.000 0.00 0.00 0.00 2.57
463 464 7.014615 ACAAACTTTGCTAGGAACAATCTTCAT 59.985 33.333 0.00 0.00 0.00 2.57
464 465 6.321181 ACAAACTTTGCTAGGAACAATCTTCA 59.679 34.615 0.00 0.00 0.00 3.02
465 466 6.739112 ACAAACTTTGCTAGGAACAATCTTC 58.261 36.000 0.00 0.00 0.00 2.87
466 467 6.715347 ACAAACTTTGCTAGGAACAATCTT 57.285 33.333 0.00 0.00 0.00 2.40
467 468 6.072452 GCTACAAACTTTGCTAGGAACAATCT 60.072 38.462 0.00 0.00 0.00 2.40
468 469 6.072452 AGCTACAAACTTTGCTAGGAACAATC 60.072 38.462 0.00 0.00 33.64 2.67
469 470 5.770162 AGCTACAAACTTTGCTAGGAACAAT 59.230 36.000 0.00 0.00 33.64 2.71
470 471 5.130350 AGCTACAAACTTTGCTAGGAACAA 58.870 37.500 0.00 0.00 33.64 2.83
471 472 4.714632 AGCTACAAACTTTGCTAGGAACA 58.285 39.130 0.00 0.00 33.64 3.18
472 473 5.690997 AAGCTACAAACTTTGCTAGGAAC 57.309 39.130 0.00 0.00 35.09 3.62
473 474 6.940298 ACATAAGCTACAAACTTTGCTAGGAA 59.060 34.615 1.14 0.00 35.09 3.36
474 475 6.472887 ACATAAGCTACAAACTTTGCTAGGA 58.527 36.000 1.14 0.00 35.09 2.94
475 476 6.743575 ACATAAGCTACAAACTTTGCTAGG 57.256 37.500 1.14 0.00 35.09 3.02
476 477 7.538678 CCAAACATAAGCTACAAACTTTGCTAG 59.461 37.037 1.14 4.63 35.09 3.42
477 478 7.013846 ACCAAACATAAGCTACAAACTTTGCTA 59.986 33.333 1.14 0.00 35.09 3.49
478 479 6.183360 ACCAAACATAAGCTACAAACTTTGCT 60.183 34.615 1.14 0.00 37.37 3.91
479 480 5.983118 ACCAAACATAAGCTACAAACTTTGC 59.017 36.000 1.14 0.00 0.00 3.68
480 481 7.491048 ACAACCAAACATAAGCTACAAACTTTG 59.509 33.333 0.00 0.00 0.00 2.77
481 482 7.552459 ACAACCAAACATAAGCTACAAACTTT 58.448 30.769 0.00 0.00 0.00 2.66
482 483 7.107639 ACAACCAAACATAAGCTACAAACTT 57.892 32.000 0.00 0.00 0.00 2.66
483 484 6.709018 ACAACCAAACATAAGCTACAAACT 57.291 33.333 0.00 0.00 0.00 2.66
484 485 6.754675 ACAACAACCAAACATAAGCTACAAAC 59.245 34.615 0.00 0.00 0.00 2.93
485 486 6.868622 ACAACAACCAAACATAAGCTACAAA 58.131 32.000 0.00 0.00 0.00 2.83
486 487 6.458232 ACAACAACCAAACATAAGCTACAA 57.542 33.333 0.00 0.00 0.00 2.41
487 488 6.458232 AACAACAACCAAACATAAGCTACA 57.542 33.333 0.00 0.00 0.00 2.74
488 489 7.489757 TGAAAACAACAACCAAACATAAGCTAC 59.510 33.333 0.00 0.00 0.00 3.58
489 490 7.548097 TGAAAACAACAACCAAACATAAGCTA 58.452 30.769 0.00 0.00 0.00 3.32
490 491 6.402222 TGAAAACAACAACCAAACATAAGCT 58.598 32.000 0.00 0.00 0.00 3.74
491 492 6.654793 TGAAAACAACAACCAAACATAAGC 57.345 33.333 0.00 0.00 0.00 3.09
492 493 8.195617 ACATGAAAACAACAACCAAACATAAG 57.804 30.769 0.00 0.00 0.00 1.73
493 494 8.446273 CAACATGAAAACAACAACCAAACATAA 58.554 29.630 0.00 0.00 0.00 1.90
494 495 7.413438 GCAACATGAAAACAACAACCAAACATA 60.413 33.333 0.00 0.00 0.00 2.29
495 496 6.622462 GCAACATGAAAACAACAACCAAACAT 60.622 34.615 0.00 0.00 0.00 2.71
496 497 5.334414 GCAACATGAAAACAACAACCAAACA 60.334 36.000 0.00 0.00 0.00 2.83
497 498 5.085390 GCAACATGAAAACAACAACCAAAC 58.915 37.500 0.00 0.00 0.00 2.93
498 499 4.999950 AGCAACATGAAAACAACAACCAAA 59.000 33.333 0.00 0.00 0.00 3.28
499 500 4.573900 AGCAACATGAAAACAACAACCAA 58.426 34.783 0.00 0.00 0.00 3.67
500 501 4.199432 AGCAACATGAAAACAACAACCA 57.801 36.364 0.00 0.00 0.00 3.67
501 502 6.073819 GGATAAGCAACATGAAAACAACAACC 60.074 38.462 0.00 0.00 0.00 3.77
502 503 6.701400 AGGATAAGCAACATGAAAACAACAAC 59.299 34.615 0.00 0.00 0.00 3.32
503 504 6.700960 CAGGATAAGCAACATGAAAACAACAA 59.299 34.615 0.00 0.00 0.00 2.83
504 505 6.215121 CAGGATAAGCAACATGAAAACAACA 58.785 36.000 0.00 0.00 0.00 3.33
505 506 5.634859 CCAGGATAAGCAACATGAAAACAAC 59.365 40.000 0.00 0.00 0.00 3.32
506 507 5.304101 ACCAGGATAAGCAACATGAAAACAA 59.696 36.000 0.00 0.00 0.00 2.83
507 508 4.832266 ACCAGGATAAGCAACATGAAAACA 59.168 37.500 0.00 0.00 0.00 2.83
508 509 5.391312 ACCAGGATAAGCAACATGAAAAC 57.609 39.130 0.00 0.00 0.00 2.43
509 510 6.418057 AAACCAGGATAAGCAACATGAAAA 57.582 33.333 0.00 0.00 0.00 2.29
510 511 5.335583 CGAAACCAGGATAAGCAACATGAAA 60.336 40.000 0.00 0.00 0.00 2.69
511 512 4.155826 CGAAACCAGGATAAGCAACATGAA 59.844 41.667 0.00 0.00 0.00 2.57
512 513 3.689161 CGAAACCAGGATAAGCAACATGA 59.311 43.478 0.00 0.00 0.00 3.07
513 514 3.731867 GCGAAACCAGGATAAGCAACATG 60.732 47.826 0.00 0.00 0.00 3.21
514 515 2.423538 GCGAAACCAGGATAAGCAACAT 59.576 45.455 0.00 0.00 0.00 2.71
515 516 1.810151 GCGAAACCAGGATAAGCAACA 59.190 47.619 0.00 0.00 0.00 3.33
516 517 1.132453 GGCGAAACCAGGATAAGCAAC 59.868 52.381 0.00 0.00 38.86 4.17
517 518 1.459450 GGCGAAACCAGGATAAGCAA 58.541 50.000 0.00 0.00 38.86 3.91
518 519 0.742990 CGGCGAAACCAGGATAAGCA 60.743 55.000 0.00 0.00 39.03 3.91
519 520 0.743345 ACGGCGAAACCAGGATAAGC 60.743 55.000 16.62 0.00 39.03 3.09
520 521 1.134788 AGACGGCGAAACCAGGATAAG 60.135 52.381 16.62 0.00 39.03 1.73
521 522 0.899720 AGACGGCGAAACCAGGATAA 59.100 50.000 16.62 0.00 39.03 1.75
522 523 0.458669 GAGACGGCGAAACCAGGATA 59.541 55.000 16.62 0.00 39.03 2.59
523 524 1.218316 GAGACGGCGAAACCAGGAT 59.782 57.895 16.62 0.00 39.03 3.24
524 525 2.654877 GAGACGGCGAAACCAGGA 59.345 61.111 16.62 0.00 39.03 3.86
525 526 2.434359 GGAGACGGCGAAACCAGG 60.434 66.667 16.62 0.00 39.03 4.45
526 527 2.027625 GTGGAGACGGCGAAACCAG 61.028 63.158 16.62 0.00 39.03 4.00
527 528 2.029964 GTGGAGACGGCGAAACCA 59.970 61.111 16.62 16.27 39.03 3.67
528 529 2.741211 GGTGGAGACGGCGAAACC 60.741 66.667 16.62 13.71 0.00 3.27
529 530 1.737008 GAGGTGGAGACGGCGAAAC 60.737 63.158 16.62 4.50 0.00 2.78
530 531 1.750341 TTGAGGTGGAGACGGCGAAA 61.750 55.000 16.62 0.00 0.00 3.46
531 532 2.204461 TTGAGGTGGAGACGGCGAA 61.204 57.895 16.62 0.00 0.00 4.70
532 533 2.599281 TTGAGGTGGAGACGGCGA 60.599 61.111 16.62 0.00 0.00 5.54
533 534 2.432628 GTTGAGGTGGAGACGGCG 60.433 66.667 4.80 4.80 0.00 6.46
534 535 1.374758 CAGTTGAGGTGGAGACGGC 60.375 63.158 0.00 0.00 0.00 5.68
535 536 1.185618 TCCAGTTGAGGTGGAGACGG 61.186 60.000 0.00 0.00 39.28 4.79
536 537 2.351777 TCCAGTTGAGGTGGAGACG 58.648 57.895 0.00 0.00 39.28 4.18
541 542 0.898320 AGACGATCCAGTTGAGGTGG 59.102 55.000 0.00 0.00 36.28 4.61
542 543 2.611518 GAAGACGATCCAGTTGAGGTG 58.388 52.381 0.00 0.00 0.00 4.00
543 544 1.550976 GGAAGACGATCCAGTTGAGGT 59.449 52.381 0.00 0.00 39.42 3.85
544 545 1.550524 TGGAAGACGATCCAGTTGAGG 59.449 52.381 5.46 0.00 44.52 3.86
552 553 0.179097 GCAGAGGTGGAAGACGATCC 60.179 60.000 0.00 0.00 40.10 3.36
553 554 0.179097 GGCAGAGGTGGAAGACGATC 60.179 60.000 0.00 0.00 0.00 3.69
554 555 1.617947 GGGCAGAGGTGGAAGACGAT 61.618 60.000 0.00 0.00 0.00 3.73
555 556 2.283529 GGGCAGAGGTGGAAGACGA 61.284 63.158 0.00 0.00 0.00 4.20
556 557 2.266055 GGGCAGAGGTGGAAGACG 59.734 66.667 0.00 0.00 0.00 4.18
557 558 1.298014 CTGGGCAGAGGTGGAAGAC 59.702 63.158 0.00 0.00 0.00 3.01
558 559 2.596851 GCTGGGCAGAGGTGGAAGA 61.597 63.158 0.00 0.00 0.00 2.87
559 560 2.045536 GCTGGGCAGAGGTGGAAG 60.046 66.667 0.00 0.00 0.00 3.46
560 561 2.853542 TGCTGGGCAGAGGTGGAA 60.854 61.111 0.00 0.00 33.32 3.53
561 562 3.640407 GTGCTGGGCAGAGGTGGA 61.640 66.667 0.00 0.00 40.08 4.02
562 563 3.496309 TTGTGCTGGGCAGAGGTGG 62.496 63.158 0.00 0.00 40.08 4.61
563 564 1.970114 CTTGTGCTGGGCAGAGGTG 60.970 63.158 0.00 0.00 40.08 4.00
564 565 2.433446 CTTGTGCTGGGCAGAGGT 59.567 61.111 0.00 0.00 40.08 3.85
565 566 2.360852 CCTTGTGCTGGGCAGAGG 60.361 66.667 7.24 7.24 40.08 3.69
566 567 1.376942 CTCCTTGTGCTGGGCAGAG 60.377 63.158 0.00 0.00 40.08 3.35
567 568 2.116983 GACTCCTTGTGCTGGGCAGA 62.117 60.000 0.00 0.00 40.08 4.26
568 569 1.673665 GACTCCTTGTGCTGGGCAG 60.674 63.158 0.00 0.00 40.08 4.85
569 570 2.116983 GAGACTCCTTGTGCTGGGCA 62.117 60.000 0.00 0.00 35.60 5.36
570 571 1.376553 GAGACTCCTTGTGCTGGGC 60.377 63.158 0.00 0.00 0.00 5.36
571 572 1.197430 AGGAGACTCCTTGTGCTGGG 61.197 60.000 18.94 0.00 46.91 4.45
572 573 2.370718 AGGAGACTCCTTGTGCTGG 58.629 57.895 18.94 0.00 46.91 4.85
584 585 1.808133 GCGTGATGAATGGGAGGAGAC 60.808 57.143 0.00 0.00 0.00 3.36
585 586 0.465705 GCGTGATGAATGGGAGGAGA 59.534 55.000 0.00 0.00 0.00 3.71
586 587 0.178767 TGCGTGATGAATGGGAGGAG 59.821 55.000 0.00 0.00 0.00 3.69
587 588 0.617935 TTGCGTGATGAATGGGAGGA 59.382 50.000 0.00 0.00 0.00 3.71
588 589 0.734889 GTTGCGTGATGAATGGGAGG 59.265 55.000 0.00 0.00 0.00 4.30
589 590 0.734889 GGTTGCGTGATGAATGGGAG 59.265 55.000 0.00 0.00 0.00 4.30
590 591 0.037447 TGGTTGCGTGATGAATGGGA 59.963 50.000 0.00 0.00 0.00 4.37
591 592 0.887247 TTGGTTGCGTGATGAATGGG 59.113 50.000 0.00 0.00 0.00 4.00
592 593 1.541147 ACTTGGTTGCGTGATGAATGG 59.459 47.619 0.00 0.00 0.00 3.16
593 594 2.226200 TGACTTGGTTGCGTGATGAATG 59.774 45.455 0.00 0.00 0.00 2.67
594 595 2.503331 TGACTTGGTTGCGTGATGAAT 58.497 42.857 0.00 0.00 0.00 2.57
595 596 1.960417 TGACTTGGTTGCGTGATGAA 58.040 45.000 0.00 0.00 0.00 2.57
596 597 1.960417 TTGACTTGGTTGCGTGATGA 58.040 45.000 0.00 0.00 0.00 2.92
597 598 2.290367 TCTTTGACTTGGTTGCGTGATG 59.710 45.455 0.00 0.00 0.00 3.07
598 599 2.571212 TCTTTGACTTGGTTGCGTGAT 58.429 42.857 0.00 0.00 0.00 3.06
599 600 2.031258 TCTTTGACTTGGTTGCGTGA 57.969 45.000 0.00 0.00 0.00 4.35
600 601 2.842208 TTCTTTGACTTGGTTGCGTG 57.158 45.000 0.00 0.00 0.00 5.34
601 602 3.507786 GTTTTCTTTGACTTGGTTGCGT 58.492 40.909 0.00 0.00 0.00 5.24
602 603 2.529894 CGTTTTCTTTGACTTGGTTGCG 59.470 45.455 0.00 0.00 0.00 4.85
603 604 2.857748 CCGTTTTCTTTGACTTGGTTGC 59.142 45.455 0.00 0.00 0.00 4.17
604 605 3.129638 TCCCGTTTTCTTTGACTTGGTTG 59.870 43.478 0.00 0.00 0.00 3.77
605 606 3.129813 GTCCCGTTTTCTTTGACTTGGTT 59.870 43.478 0.00 0.00 0.00 3.67
606 607 2.686405 GTCCCGTTTTCTTTGACTTGGT 59.314 45.455 0.00 0.00 0.00 3.67
607 608 2.286772 CGTCCCGTTTTCTTTGACTTGG 60.287 50.000 0.00 0.00 0.00 3.61
608 609 2.610374 TCGTCCCGTTTTCTTTGACTTG 59.390 45.455 0.00 0.00 0.00 3.16
609 610 2.610833 GTCGTCCCGTTTTCTTTGACTT 59.389 45.455 0.00 0.00 0.00 3.01
610 611 2.207590 GTCGTCCCGTTTTCTTTGACT 58.792 47.619 0.00 0.00 0.00 3.41
611 612 1.071041 CGTCGTCCCGTTTTCTTTGAC 60.071 52.381 0.00 0.00 0.00 3.18
612 613 1.202394 TCGTCGTCCCGTTTTCTTTGA 60.202 47.619 0.00 0.00 0.00 2.69
613 614 1.191647 CTCGTCGTCCCGTTTTCTTTG 59.808 52.381 0.00 0.00 0.00 2.77
614 615 1.494824 CTCGTCGTCCCGTTTTCTTT 58.505 50.000 0.00 0.00 0.00 2.52
615 616 0.319297 CCTCGTCGTCCCGTTTTCTT 60.319 55.000 0.00 0.00 0.00 2.52
616 617 1.174712 TCCTCGTCGTCCCGTTTTCT 61.175 55.000 0.00 0.00 0.00 2.52
617 618 1.005804 GTCCTCGTCGTCCCGTTTTC 61.006 60.000 0.00 0.00 0.00 2.29
618 619 1.006922 GTCCTCGTCGTCCCGTTTT 60.007 57.895 0.00 0.00 0.00 2.43
619 620 2.647297 GTCCTCGTCGTCCCGTTT 59.353 61.111 0.00 0.00 0.00 3.60
620 621 3.368571 GGTCCTCGTCGTCCCGTT 61.369 66.667 0.00 0.00 0.00 4.44
621 622 4.341783 AGGTCCTCGTCGTCCCGT 62.342 66.667 0.00 0.00 0.00 5.28
622 623 3.507009 GAGGTCCTCGTCGTCCCG 61.507 72.222 2.28 0.00 0.00 5.14
623 624 2.045143 AGAGGTCCTCGTCGTCCC 60.045 66.667 13.41 0.00 35.36 4.46
624 625 1.376942 TGAGAGGTCCTCGTCGTCC 60.377 63.158 13.41 1.22 44.92 4.79
625 626 0.954449 TGTGAGAGGTCCTCGTCGTC 60.954 60.000 13.41 6.11 44.92 4.20
626 627 0.536687 TTGTGAGAGGTCCTCGTCGT 60.537 55.000 13.41 0.00 44.92 4.34
627 628 0.169230 CTTGTGAGAGGTCCTCGTCG 59.831 60.000 13.41 0.00 44.92 5.12
628 629 0.528470 CCTTGTGAGAGGTCCTCGTC 59.472 60.000 13.41 11.40 44.92 4.20
629 630 0.900647 CCCTTGTGAGAGGTCCTCGT 60.901 60.000 13.41 1.96 44.92 4.18
630 631 0.900647 ACCCTTGTGAGAGGTCCTCG 60.901 60.000 13.41 0.00 44.92 4.63
631 632 0.899019 GACCCTTGTGAGAGGTCCTC 59.101 60.000 11.31 11.31 43.60 3.71
632 633 3.074788 GACCCTTGTGAGAGGTCCT 57.925 57.895 0.00 0.00 43.60 3.85
635 636 0.759436 ACGTGACCCTTGTGAGAGGT 60.759 55.000 0.00 0.00 34.88 3.85
636 637 0.319900 CACGTGACCCTTGTGAGAGG 60.320 60.000 10.90 0.00 35.66 3.69
637 638 0.389391 ACACGTGACCCTTGTGAGAG 59.611 55.000 25.01 0.00 37.08 3.20
638 639 0.104120 CACACGTGACCCTTGTGAGA 59.896 55.000 25.01 0.00 42.77 3.27
639 640 0.179084 ACACACGTGACCCTTGTGAG 60.179 55.000 25.01 1.20 42.77 3.51
640 641 0.250793 AACACACGTGACCCTTGTGA 59.749 50.000 25.01 0.00 42.77 3.58
641 642 1.091537 AAACACACGTGACCCTTGTG 58.908 50.000 25.01 10.65 45.11 3.33
642 643 2.695127 TAAACACACGTGACCCTTGT 57.305 45.000 25.01 12.97 0.00 3.16
643 644 5.445407 CGAATATAAACACACGTGACCCTTG 60.445 44.000 25.01 12.24 0.00 3.61
644 645 4.628333 CGAATATAAACACACGTGACCCTT 59.372 41.667 25.01 11.78 0.00 3.95
645 646 4.178540 CGAATATAAACACACGTGACCCT 58.821 43.478 25.01 6.38 0.00 4.34
646 647 3.242188 GCGAATATAAACACACGTGACCC 60.242 47.826 25.01 0.00 0.00 4.46
647 648 3.540744 CGCGAATATAAACACACGTGACC 60.541 47.826 25.01 0.00 34.05 4.02
648 649 3.580389 CGCGAATATAAACACACGTGAC 58.420 45.455 25.01 0.00 34.05 3.67
649 650 2.028284 GCGCGAATATAAACACACGTGA 59.972 45.455 25.01 0.00 34.05 4.35
650 651 2.350616 GCGCGAATATAAACACACGTG 58.649 47.619 15.48 15.48 35.03 4.49
677 682 1.518774 CAAATGGGTGGAGCATGCC 59.481 57.895 15.66 5.80 0.00 4.40
681 686 2.283821 GGCCAAATGGGTGGAGCA 60.284 61.111 0.00 0.00 41.65 4.26
683 688 2.755469 CGGGCCAAATGGGTGGAG 60.755 66.667 4.39 0.00 41.65 3.86
689 694 0.173255 GTCAATGACGGGCCAAATGG 59.827 55.000 4.39 0.00 38.53 3.16
700 705 2.048603 GCCAGGCCAGGTCAATGAC 61.049 63.158 16.66 4.51 0.00 3.06
896 910 1.000283 GAGTGGTGAGTGGTGAGTGAG 60.000 57.143 0.00 0.00 0.00 3.51
915 931 3.680937 GTGAATAATTCCGTTCCGTGTGA 59.319 43.478 0.00 0.00 0.00 3.58
916 932 3.482923 CGTGAATAATTCCGTTCCGTGTG 60.483 47.826 0.00 0.00 0.00 3.82
917 933 2.669434 CGTGAATAATTCCGTTCCGTGT 59.331 45.455 0.00 0.00 0.00 4.49
918 934 2.924926 TCGTGAATAATTCCGTTCCGTG 59.075 45.455 0.00 0.00 0.00 4.94
919 935 2.925563 GTCGTGAATAATTCCGTTCCGT 59.074 45.455 0.00 0.00 0.00 4.69
920 936 2.283351 GGTCGTGAATAATTCCGTTCCG 59.717 50.000 0.00 0.00 0.00 4.30
921 937 2.283351 CGGTCGTGAATAATTCCGTTCC 59.717 50.000 0.00 0.00 34.38 3.62
922 938 3.181397 TCGGTCGTGAATAATTCCGTTC 58.819 45.455 0.00 0.00 39.14 3.95
923 939 3.235157 TCGGTCGTGAATAATTCCGTT 57.765 42.857 0.00 0.00 39.14 4.44
935 951 0.599558 TACCAGGTCTTTCGGTCGTG 59.400 55.000 0.00 0.00 34.12 4.35
950 997 4.021719 GTCTTGTTGTACTACCAGCTACCA 60.022 45.833 4.98 0.00 0.00 3.25
951 998 4.021719 TGTCTTGTTGTACTACCAGCTACC 60.022 45.833 4.98 0.00 0.00 3.18
952 999 4.922103 GTGTCTTGTTGTACTACCAGCTAC 59.078 45.833 4.98 3.06 0.00 3.58
953 1000 4.021719 GGTGTCTTGTTGTACTACCAGCTA 60.022 45.833 4.98 0.00 0.00 3.32
954 1001 3.244112 GGTGTCTTGTTGTACTACCAGCT 60.244 47.826 4.98 0.00 0.00 4.24
955 1002 3.064931 GGTGTCTTGTTGTACTACCAGC 58.935 50.000 4.98 2.14 0.00 4.85
956 1003 3.005050 TCGGTGTCTTGTTGTACTACCAG 59.995 47.826 4.98 3.77 0.00 4.00
957 1004 2.957680 TCGGTGTCTTGTTGTACTACCA 59.042 45.455 4.98 0.00 0.00 3.25
958 1005 3.243501 TGTCGGTGTCTTGTTGTACTACC 60.244 47.826 4.98 0.00 0.00 3.18
959 1006 3.732721 GTGTCGGTGTCTTGTTGTACTAC 59.267 47.826 0.05 0.05 0.00 2.73
960 1007 3.380954 TGTGTCGGTGTCTTGTTGTACTA 59.619 43.478 0.00 0.00 0.00 1.82
961 1008 2.166870 TGTGTCGGTGTCTTGTTGTACT 59.833 45.455 0.00 0.00 0.00 2.73
962 1009 2.283351 GTGTGTCGGTGTCTTGTTGTAC 59.717 50.000 0.00 0.00 0.00 2.90
963 1010 2.542597 GTGTGTCGGTGTCTTGTTGTA 58.457 47.619 0.00 0.00 0.00 2.41
964 1011 1.365699 GTGTGTCGGTGTCTTGTTGT 58.634 50.000 0.00 0.00 0.00 3.32
965 1012 0.655733 GGTGTGTCGGTGTCTTGTTG 59.344 55.000 0.00 0.00 0.00 3.33
966 1013 0.250793 TGGTGTGTCGGTGTCTTGTT 59.749 50.000 0.00 0.00 0.00 2.83
967 1014 0.461339 GTGGTGTGTCGGTGTCTTGT 60.461 55.000 0.00 0.00 0.00 3.16
968 1015 0.461163 TGTGGTGTGTCGGTGTCTTG 60.461 55.000 0.00 0.00 0.00 3.02
969 1016 0.179084 CTGTGGTGTGTCGGTGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
970 1017 1.441729 CTGTGGTGTGTCGGTGTCT 59.558 57.895 0.00 0.00 0.00 3.41
971 1018 1.594293 CCTGTGGTGTGTCGGTGTC 60.594 63.158 0.00 0.00 0.00 3.67
972 1019 2.504032 CCTGTGGTGTGTCGGTGT 59.496 61.111 0.00 0.00 0.00 4.16
973 1020 2.280797 CCCTGTGGTGTGTCGGTG 60.281 66.667 0.00 0.00 0.00 4.94
974 1021 4.250305 GCCCTGTGGTGTGTCGGT 62.250 66.667 0.00 0.00 0.00 4.69
1064 1112 2.693250 TATGGCCGCGGAGATGAACG 62.693 60.000 33.48 0.00 0.00 3.95
1074 1122 2.281070 AGCAGGAATATGGCCGCG 60.281 61.111 0.00 0.00 32.71 6.46
1265 1332 2.827190 CCGATCCGACTCCGTCCA 60.827 66.667 0.00 0.00 0.00 4.02
1838 1935 2.047560 GGAACCAACTCGTCCCGG 60.048 66.667 0.00 0.00 0.00 5.73
1876 1974 1.580815 TTTTTAAACGCGTCCGAGGT 58.419 45.000 14.44 0.00 38.29 3.85
2497 5853 4.263209 CAGCGCCGGCAACAACAA 62.263 61.111 28.98 0.00 43.41 2.83
2590 5946 4.477975 GAGGTCGAGGTCGTGCGG 62.478 72.222 0.00 0.00 40.80 5.69
2714 6070 4.096003 CCAGGCGAACATCCCGGT 62.096 66.667 0.00 0.00 0.00 5.28
2783 6140 3.842923 CAGAGATGAGGCGGCGGT 61.843 66.667 9.78 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.