Multiple sequence alignment - TraesCS3D01G024000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G024000 chr3D 100.000 3179 0 0 1 3179 7593476 7596654 0.000000e+00 5871.0
1 TraesCS3D01G024000 chr3D 77.154 1497 234 69 989 2446 569129459 569128032 0.000000e+00 771.0
2 TraesCS3D01G024000 chr3D 75.385 1881 266 108 988 2770 568007121 568005340 0.000000e+00 726.0
3 TraesCS3D01G024000 chr3D 75.224 1114 154 64 1708 2759 567138436 567139489 1.760000e-112 416.0
4 TraesCS3D01G024000 chr3D 74.910 1116 158 56 1708 2759 569676451 569675394 6.390000e-107 398.0
5 TraesCS3D01G024000 chr3D 88.406 207 23 1 2564 2770 567300432 567300227 6.810000e-62 248.0
6 TraesCS3D01G024000 chr3D 85.377 212 25 2 991 1196 565641909 565642120 6.910000e-52 215.0
7 TraesCS3D01G024000 chr3D 85.075 201 24 3 992 1186 565162776 565162976 1.930000e-47 200.0
8 TraesCS3D01G024000 chr3D 83.562 219 26 5 986 1196 565830733 565830949 2.500000e-46 196.0
9 TraesCS3D01G024000 chr3D 77.326 344 63 9 1721 2064 568862414 568862086 4.190000e-44 189.0
10 TraesCS3D01G024000 chr3D 93.548 62 3 1 2565 2626 570302841 570302781 1.210000e-14 91.6
11 TraesCS3D01G024000 chr3D 87.500 64 8 0 3035 3098 563595108 563595045 1.220000e-09 75.0
12 TraesCS3D01G024000 chr3D 97.619 42 1 0 3035 3076 568012739 568012780 4.400000e-09 73.1
13 TraesCS3D01G024000 chr3A 93.359 1295 37 17 1733 2995 12811457 12810180 0.000000e+00 1869.0
14 TraesCS3D01G024000 chr3A 76.106 1243 196 54 1460 2663 701764624 701765804 9.960000e-155 556.0
15 TraesCS3D01G024000 chr3A 85.375 506 49 7 2501 2982 12745714 12746218 4.730000e-138 501.0
16 TraesCS3D01G024000 chr3A 75.345 1087 170 42 1719 2759 700639971 700638937 1.750000e-117 433.0
17 TraesCS3D01G024000 chr3A 85.050 301 20 7 648 937 12811741 12811455 1.870000e-72 283.0
18 TraesCS3D01G024000 chr3A 87.685 203 10 7 1 197 12812164 12811971 4.130000e-54 222.0
19 TraesCS3D01G024000 chr3A 77.971 345 69 5 1721 2064 700695189 700695527 3.210000e-50 209.0
20 TraesCS3D01G024000 chr3A 74.697 577 91 35 1877 2443 700635406 700634875 4.160000e-49 206.0
21 TraesCS3D01G024000 chr3A 77.686 363 47 16 2090 2452 701667494 701667822 1.160000e-44 191.0
22 TraesCS3D01G024000 chr3A 76.000 375 68 11 2569 2928 701835865 701836232 1.170000e-39 174.0
23 TraesCS3D01G024000 chr3A 86.047 86 11 1 2602 2687 655539667 655539751 1.210000e-14 91.6
24 TraesCS3D01G024000 chr3A 87.179 78 9 1 2565 2642 703178824 703178748 1.570000e-13 87.9
25 TraesCS3D01G024000 chr3A 87.500 64 8 0 3035 3098 698167696 698167633 1.220000e-09 75.0
26 TraesCS3D01G024000 chr7D 75.421 1485 256 65 1003 2452 506664202 506662792 1.250000e-173 619.0
27 TraesCS3D01G024000 chr3B 72.358 1107 205 55 986 2049 752920232 752919184 4.070000e-64 255.0
28 TraesCS3D01G024000 chr3B 85.377 212 25 2 987 1192 752973262 752973051 6.910000e-52 215.0
29 TraesCS3D01G024000 chr3B 83.410 217 28 7 986 1201 202001169 202000960 9.000000e-46 195.0
30 TraesCS3D01G024000 chr3B 72.680 571 110 21 1725 2266 752376500 752375947 7.100000e-32 148.0
31 TraesCS3D01G024000 chr3B 98.592 71 1 0 1 71 9917486 9917556 3.330000e-25 126.0
32 TraesCS3D01G024000 chr3B 82.946 129 14 5 2316 2443 755244586 755244465 3.350000e-20 110.0
33 TraesCS3D01G024000 chr3B 91.139 79 7 0 2692 2770 754949966 754950044 1.210000e-19 108.0
34 TraesCS3D01G024000 chr3B 92.063 63 5 0 2740 2802 685637394 685637332 4.370000e-14 89.8
35 TraesCS3D01G024000 chr3B 92.063 63 5 0 2740 2802 685665888 685665826 4.370000e-14 89.8
36 TraesCS3D01G024000 chr3B 81.579 76 12 2 3035 3109 751167001 751167075 9.520000e-06 62.1
37 TraesCS3D01G024000 chr7B 76.356 461 63 30 1997 2450 534820038 534819617 4.160000e-49 206.0
38 TraesCS3D01G024000 chr7B 83.803 142 16 6 2314 2450 534821371 534821232 9.260000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G024000 chr3D 7593476 7596654 3178 False 5871.000000 5871 100.000 1 3179 1 chr3D.!!$F1 3178
1 TraesCS3D01G024000 chr3D 569128032 569129459 1427 True 771.000000 771 77.154 989 2446 1 chr3D.!!$R5 1457
2 TraesCS3D01G024000 chr3D 568005340 568007121 1781 True 726.000000 726 75.385 988 2770 1 chr3D.!!$R3 1782
3 TraesCS3D01G024000 chr3D 567138436 567139489 1053 False 416.000000 416 75.224 1708 2759 1 chr3D.!!$F5 1051
4 TraesCS3D01G024000 chr3D 569675394 569676451 1057 True 398.000000 398 74.910 1708 2759 1 chr3D.!!$R6 1051
5 TraesCS3D01G024000 chr3A 12810180 12812164 1984 True 791.333333 1869 88.698 1 2995 3 chr3A.!!$R3 2994
6 TraesCS3D01G024000 chr3A 701764624 701765804 1180 False 556.000000 556 76.106 1460 2663 1 chr3A.!!$F5 1203
7 TraesCS3D01G024000 chr3A 12745714 12746218 504 False 501.000000 501 85.375 2501 2982 1 chr3A.!!$F1 481
8 TraesCS3D01G024000 chr3A 700634875 700639971 5096 True 319.500000 433 75.021 1719 2759 2 chr3A.!!$R4 1040
9 TraesCS3D01G024000 chr7D 506662792 506664202 1410 True 619.000000 619 75.421 1003 2452 1 chr7D.!!$R1 1449
10 TraesCS3D01G024000 chr3B 752919184 752920232 1048 True 255.000000 255 72.358 986 2049 1 chr3B.!!$R5 1063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 570 0.034477 ACTGAATTACAAGCCCGGGG 60.034 55.0 25.28 9.31 0.0 5.73 F
1339 1394 0.041833 CCTCCTCCTCCTCTCAACCA 59.958 60.0 0.00 0.00 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 1685 0.179124 CACTAGCTTGGTCTCGGAGC 60.179 60.0 0.00 0.0 36.68 4.7 R
2932 4377 0.036875 GGACCCAGCTGTTTAGTGCT 59.963 55.0 13.81 0.0 40.54 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.754375 GGGAACAAGAAGGCCGGA 59.246 61.111 5.05 0.00 0.00 5.14
104 105 2.345244 CTTGCTGAGACGCCTGGT 59.655 61.111 0.00 0.00 0.00 4.00
107 108 4.687215 GCTGAGACGCCTGGTGCA 62.687 66.667 7.27 0.00 41.33 4.57
115 116 0.537143 ACGCCTGGTGCATTCTTTCA 60.537 50.000 7.27 0.00 41.33 2.69
117 118 1.202222 CGCCTGGTGCATTCTTTCATC 60.202 52.381 0.00 0.00 41.33 2.92
118 119 1.820519 GCCTGGTGCATTCTTTCATCA 59.179 47.619 0.00 0.00 40.77 3.07
119 120 2.416431 GCCTGGTGCATTCTTTCATCAC 60.416 50.000 0.00 0.00 40.77 3.06
120 121 2.159476 CCTGGTGCATTCTTTCATCACG 60.159 50.000 0.00 0.00 0.00 4.35
135 142 7.817478 TCTTTCATCACGTGTCTATGTTGTATT 59.183 33.333 16.51 0.00 0.00 1.89
136 143 8.989653 TTTCATCACGTGTCTATGTTGTATTA 57.010 30.769 16.51 0.00 0.00 0.98
137 144 9.594478 TTTCATCACGTGTCTATGTTGTATTAT 57.406 29.630 16.51 0.00 0.00 1.28
138 145 8.797266 TCATCACGTGTCTATGTTGTATTATC 57.203 34.615 16.51 0.00 0.00 1.75
139 146 8.630037 TCATCACGTGTCTATGTTGTATTATCT 58.370 33.333 16.51 0.00 0.00 1.98
140 147 9.249457 CATCACGTGTCTATGTTGTATTATCTT 57.751 33.333 16.51 0.00 0.00 2.40
141 148 8.628882 TCACGTGTCTATGTTGTATTATCTTG 57.371 34.615 16.51 0.00 0.00 3.02
142 149 7.222031 TCACGTGTCTATGTTGTATTATCTTGC 59.778 37.037 16.51 0.00 0.00 4.01
143 150 7.010091 CACGTGTCTATGTTGTATTATCTTGCA 59.990 37.037 7.58 0.00 0.00 4.08
170 180 3.403228 AATTATTGTGGAGGGGTGCAT 57.597 42.857 0.00 0.00 0.00 3.96
197 207 1.610673 TGTCAGGACCTGCCTCCTC 60.611 63.158 17.33 3.65 46.97 3.71
198 208 2.039624 TCAGGACCTGCCTCCTCC 59.960 66.667 17.33 0.00 46.97 4.30
199 209 3.465403 CAGGACCTGCCTCCTCCG 61.465 72.222 8.99 0.00 46.97 4.63
201 211 2.043248 GGACCTGCCTCCTCCGTA 60.043 66.667 0.00 0.00 0.00 4.02
203 213 1.049289 GGACCTGCCTCCTCCGTATT 61.049 60.000 0.00 0.00 0.00 1.89
204 214 0.831307 GACCTGCCTCCTCCGTATTT 59.169 55.000 0.00 0.00 0.00 1.40
205 215 1.209747 GACCTGCCTCCTCCGTATTTT 59.790 52.381 0.00 0.00 0.00 1.82
206 216 1.065418 ACCTGCCTCCTCCGTATTTTG 60.065 52.381 0.00 0.00 0.00 2.44
207 217 1.065418 CCTGCCTCCTCCGTATTTTGT 60.065 52.381 0.00 0.00 0.00 2.83
208 218 2.169769 CCTGCCTCCTCCGTATTTTGTA 59.830 50.000 0.00 0.00 0.00 2.41
209 219 3.195661 CTGCCTCCTCCGTATTTTGTAC 58.804 50.000 0.00 0.00 0.00 2.90
210 220 2.835764 TGCCTCCTCCGTATTTTGTACT 59.164 45.455 0.00 0.00 0.00 2.73
211 221 3.195661 GCCTCCTCCGTATTTTGTACTG 58.804 50.000 0.00 0.00 0.00 2.74
212 222 3.195661 CCTCCTCCGTATTTTGTACTGC 58.804 50.000 0.00 0.00 0.00 4.40
213 223 2.858344 CTCCTCCGTATTTTGTACTGCG 59.142 50.000 0.00 0.00 0.00 5.18
215 225 3.443329 TCCTCCGTATTTTGTACTGCGTA 59.557 43.478 0.00 0.00 0.00 4.42
216 226 3.549070 CCTCCGTATTTTGTACTGCGTAC 59.451 47.826 10.61 10.61 39.24 3.67
217 227 3.170505 TCCGTATTTTGTACTGCGTACG 58.829 45.455 11.84 11.84 41.41 3.67
218 228 2.916716 CCGTATTTTGTACTGCGTACGT 59.083 45.455 17.90 0.00 41.41 3.57
219 229 4.094911 CCGTATTTTGTACTGCGTACGTA 58.905 43.478 17.90 12.02 41.41 3.57
220 230 4.028509 CCGTATTTTGTACTGCGTACGTAC 60.029 45.833 17.90 15.90 41.41 3.67
229 239 2.908363 CGTACGTACGCGGATTGC 59.092 61.111 32.36 0.00 43.14 3.56
230 240 1.868692 CGTACGTACGCGGATTGCA 60.869 57.895 32.36 0.00 46.97 4.08
231 241 1.627424 GTACGTACGCGGATTGCAC 59.373 57.895 16.72 0.00 46.97 4.57
232 242 0.799534 GTACGTACGCGGATTGCACT 60.800 55.000 16.72 0.00 46.97 4.40
233 243 0.523968 TACGTACGCGGATTGCACTC 60.524 55.000 16.72 0.00 46.97 3.51
234 244 1.516386 CGTACGCGGATTGCACTCT 60.516 57.895 12.47 0.00 46.97 3.24
235 245 1.472276 CGTACGCGGATTGCACTCTC 61.472 60.000 12.47 0.00 46.97 3.20
236 246 1.141019 TACGCGGATTGCACTCTCC 59.859 57.895 12.47 1.76 46.97 3.71
237 247 2.292794 TACGCGGATTGCACTCTCCC 62.293 60.000 12.47 0.00 46.97 4.30
238 248 2.586792 GCGGATTGCACTCTCCCT 59.413 61.111 3.88 0.00 45.45 4.20
239 249 1.078143 GCGGATTGCACTCTCCCTT 60.078 57.895 3.88 0.00 45.45 3.95
240 250 0.678048 GCGGATTGCACTCTCCCTTT 60.678 55.000 3.88 0.00 45.45 3.11
241 251 1.373570 CGGATTGCACTCTCCCTTTC 58.626 55.000 3.88 0.00 0.00 2.62
242 252 1.373570 GGATTGCACTCTCCCTTTCG 58.626 55.000 3.88 0.00 0.00 3.46
243 253 1.373570 GATTGCACTCTCCCTTTCGG 58.626 55.000 0.00 0.00 0.00 4.30
244 254 0.678048 ATTGCACTCTCCCTTTCGGC 60.678 55.000 0.00 0.00 0.00 5.54
245 255 2.436824 GCACTCTCCCTTTCGGCC 60.437 66.667 0.00 0.00 0.00 6.13
246 256 2.269241 CACTCTCCCTTTCGGCCC 59.731 66.667 0.00 0.00 0.00 5.80
247 257 2.122954 ACTCTCCCTTTCGGCCCT 59.877 61.111 0.00 0.00 0.00 5.19
248 258 2.294078 ACTCTCCCTTTCGGCCCTG 61.294 63.158 0.00 0.00 0.00 4.45
249 259 3.689002 CTCTCCCTTTCGGCCCTGC 62.689 68.421 0.00 0.00 0.00 4.85
250 260 3.721706 CTCCCTTTCGGCCCTGCT 61.722 66.667 0.00 0.00 0.00 4.24
251 261 3.984193 CTCCCTTTCGGCCCTGCTG 62.984 68.421 0.00 0.00 36.06 4.41
265 275 2.262471 CTGCTGGCGATTGGTTCTGC 62.262 60.000 0.00 0.00 0.00 4.26
282 296 1.004440 GCACAGGACACCTCTCCAC 60.004 63.158 0.00 0.00 31.94 4.02
303 317 3.884091 ACCGAGGTCACTATGTATCTGTC 59.116 47.826 0.00 0.00 0.00 3.51
312 326 6.090898 GTCACTATGTATCTGTCGTTTGCTTT 59.909 38.462 0.00 0.00 0.00 3.51
317 331 4.388773 TGTATCTGTCGTTTGCTTTAGCTG 59.611 41.667 0.00 0.00 42.66 4.24
319 333 3.202906 TCTGTCGTTTGCTTTAGCTGTT 58.797 40.909 0.00 0.00 42.66 3.16
328 342 2.289547 TGCTTTAGCTGTTTGTCGGAAC 59.710 45.455 0.00 0.00 42.66 3.62
341 355 4.812308 GGAACGTTACGTGCTTGC 57.188 55.556 15.92 0.00 39.99 4.01
353 367 2.076100 CGTGCTTGCTGTATCCTTTGA 58.924 47.619 0.00 0.00 0.00 2.69
354 368 2.679837 CGTGCTTGCTGTATCCTTTGAT 59.320 45.455 0.00 0.00 34.87 2.57
355 369 3.486375 CGTGCTTGCTGTATCCTTTGATG 60.486 47.826 0.00 0.00 32.18 3.07
356 370 2.424601 TGCTTGCTGTATCCTTTGATGC 59.575 45.455 0.00 0.00 34.50 3.91
357 371 2.686915 GCTTGCTGTATCCTTTGATGCT 59.313 45.455 0.00 0.00 34.94 3.79
358 372 3.129988 GCTTGCTGTATCCTTTGATGCTT 59.870 43.478 0.00 0.00 34.94 3.91
359 373 4.381292 GCTTGCTGTATCCTTTGATGCTTT 60.381 41.667 0.00 0.00 34.94 3.51
360 374 5.717119 CTTGCTGTATCCTTTGATGCTTTT 58.283 37.500 0.00 0.00 34.94 2.27
361 375 5.314923 TGCTGTATCCTTTGATGCTTTTC 57.685 39.130 0.00 0.00 34.94 2.29
362 376 5.012239 TGCTGTATCCTTTGATGCTTTTCT 58.988 37.500 0.00 0.00 34.94 2.52
363 377 5.124457 TGCTGTATCCTTTGATGCTTTTCTC 59.876 40.000 0.00 0.00 34.94 2.87
364 378 5.356470 GCTGTATCCTTTGATGCTTTTCTCT 59.644 40.000 0.00 0.00 34.94 3.10
365 379 6.127786 GCTGTATCCTTTGATGCTTTTCTCTT 60.128 38.462 0.00 0.00 34.94 2.85
366 380 7.383102 TGTATCCTTTGATGCTTTTCTCTTC 57.617 36.000 0.00 0.00 34.94 2.87
367 381 7.170965 TGTATCCTTTGATGCTTTTCTCTTCT 58.829 34.615 0.00 0.00 34.94 2.85
368 382 7.667219 TGTATCCTTTGATGCTTTTCTCTTCTT 59.333 33.333 0.00 0.00 34.94 2.52
369 383 6.566197 TCCTTTGATGCTTTTCTCTTCTTC 57.434 37.500 0.00 0.00 0.00 2.87
370 384 6.302269 TCCTTTGATGCTTTTCTCTTCTTCT 58.698 36.000 0.00 0.00 0.00 2.85
371 385 6.774656 TCCTTTGATGCTTTTCTCTTCTTCTT 59.225 34.615 0.00 0.00 0.00 2.52
372 386 7.286316 TCCTTTGATGCTTTTCTCTTCTTCTTT 59.714 33.333 0.00 0.00 0.00 2.52
373 387 7.924947 CCTTTGATGCTTTTCTCTTCTTCTTTT 59.075 33.333 0.00 0.00 0.00 2.27
374 388 9.310716 CTTTGATGCTTTTCTCTTCTTCTTTTT 57.689 29.630 0.00 0.00 0.00 1.94
395 409 6.713792 TTTTTCTTTTTGTGGAAAGGAACG 57.286 33.333 0.00 0.00 41.35 3.95
396 410 3.430333 TCTTTTTGTGGAAAGGAACGC 57.570 42.857 0.00 0.00 37.27 4.84
405 419 4.083003 TGTGGAAAGGAACGCAATGTATTC 60.083 41.667 0.00 0.00 0.00 1.75
422 436 8.400947 CAATGTATTCCATTATATAGTGCTGCC 58.599 37.037 0.00 0.00 41.93 4.85
428 442 3.380479 TTATATAGTGCTGCCGGACAC 57.620 47.619 5.05 10.41 37.05 3.67
429 443 0.393077 ATATAGTGCTGCCGGACACC 59.607 55.000 5.05 0.00 37.51 4.16
430 444 0.686441 TATAGTGCTGCCGGACACCT 60.686 55.000 5.05 3.25 37.51 4.00
431 445 1.961180 ATAGTGCTGCCGGACACCTC 61.961 60.000 5.05 0.00 37.51 3.85
439 453 4.680237 CGGACACCTCGCCAGCAA 62.680 66.667 0.00 0.00 0.00 3.91
440 454 3.050275 GGACACCTCGCCAGCAAC 61.050 66.667 0.00 0.00 0.00 4.17
441 455 2.280797 GACACCTCGCCAGCAACA 60.281 61.111 0.00 0.00 0.00 3.33
442 456 1.891919 GACACCTCGCCAGCAACAA 60.892 57.895 0.00 0.00 0.00 2.83
443 457 2.117941 GACACCTCGCCAGCAACAAC 62.118 60.000 0.00 0.00 0.00 3.32
444 458 2.186160 CACCTCGCCAGCAACAACA 61.186 57.895 0.00 0.00 0.00 3.33
445 459 1.228245 ACCTCGCCAGCAACAACAT 60.228 52.632 0.00 0.00 0.00 2.71
446 460 0.823356 ACCTCGCCAGCAACAACATT 60.823 50.000 0.00 0.00 0.00 2.71
447 461 0.109597 CCTCGCCAGCAACAACATTC 60.110 55.000 0.00 0.00 0.00 2.67
448 462 0.592637 CTCGCCAGCAACAACATTCA 59.407 50.000 0.00 0.00 0.00 2.57
449 463 0.592637 TCGCCAGCAACAACATTCAG 59.407 50.000 0.00 0.00 0.00 3.02
450 464 0.311790 CGCCAGCAACAACATTCAGT 59.688 50.000 0.00 0.00 0.00 3.41
451 465 1.535028 CGCCAGCAACAACATTCAGTA 59.465 47.619 0.00 0.00 0.00 2.74
452 466 2.665519 CGCCAGCAACAACATTCAGTAC 60.666 50.000 0.00 0.00 0.00 2.73
453 467 2.293122 GCCAGCAACAACATTCAGTACA 59.707 45.455 0.00 0.00 0.00 2.90
454 468 3.243367 GCCAGCAACAACATTCAGTACAA 60.243 43.478 0.00 0.00 0.00 2.41
455 469 4.736168 GCCAGCAACAACATTCAGTACAAA 60.736 41.667 0.00 0.00 0.00 2.83
456 470 4.977963 CCAGCAACAACATTCAGTACAAAG 59.022 41.667 0.00 0.00 0.00 2.77
457 471 4.442073 CAGCAACAACATTCAGTACAAAGC 59.558 41.667 0.00 0.00 0.00 3.51
458 472 3.735746 GCAACAACATTCAGTACAAAGCC 59.264 43.478 0.00 0.00 0.00 4.35
459 473 4.499696 GCAACAACATTCAGTACAAAGCCT 60.500 41.667 0.00 0.00 0.00 4.58
460 474 4.836125 ACAACATTCAGTACAAAGCCTG 57.164 40.909 0.00 0.00 0.00 4.85
461 475 3.004734 ACAACATTCAGTACAAAGCCTGC 59.995 43.478 0.00 0.00 0.00 4.85
462 476 1.806542 ACATTCAGTACAAAGCCTGCG 59.193 47.619 0.00 0.00 0.00 5.18
463 477 2.076100 CATTCAGTACAAAGCCTGCGA 58.924 47.619 0.00 0.00 0.00 5.10
464 478 1.795768 TTCAGTACAAAGCCTGCGAG 58.204 50.000 0.00 0.00 0.00 5.03
465 479 0.670546 TCAGTACAAAGCCTGCGAGC 60.671 55.000 0.00 0.00 0.00 5.03
467 481 0.671781 AGTACAAAGCCTGCGAGCTG 60.672 55.000 0.00 0.00 44.11 4.24
468 482 0.951040 GTACAAAGCCTGCGAGCTGT 60.951 55.000 0.00 0.00 44.11 4.40
469 483 0.670546 TACAAAGCCTGCGAGCTGTC 60.671 55.000 0.00 0.00 44.11 3.51
470 484 2.359230 AAAGCCTGCGAGCTGTCC 60.359 61.111 0.00 0.00 44.11 4.02
471 485 3.909086 AAAGCCTGCGAGCTGTCCC 62.909 63.158 0.00 0.00 44.11 4.46
473 487 4.704833 GCCTGCGAGCTGTCCCAA 62.705 66.667 0.00 0.00 0.00 4.12
474 488 2.743928 CCTGCGAGCTGTCCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
475 489 2.743928 CTGCGAGCTGTCCCAACC 60.744 66.667 0.00 0.00 0.00 3.77
476 490 3.535629 CTGCGAGCTGTCCCAACCA 62.536 63.158 0.00 0.00 0.00 3.67
477 491 2.743928 GCGAGCTGTCCCAACCAG 60.744 66.667 0.00 0.00 0.00 4.00
478 492 2.046892 CGAGCTGTCCCAACCAGG 60.047 66.667 0.00 0.00 37.03 4.45
479 493 2.883828 CGAGCTGTCCCAACCAGGT 61.884 63.158 0.00 0.00 42.93 4.00
480 494 1.456287 GAGCTGTCCCAACCAGGTT 59.544 57.895 0.00 0.00 40.51 3.50
481 495 0.178990 GAGCTGTCCCAACCAGGTTT 60.179 55.000 0.44 0.00 40.51 3.27
482 496 0.261696 AGCTGTCCCAACCAGGTTTT 59.738 50.000 0.44 0.00 37.36 2.43
483 497 1.497286 AGCTGTCCCAACCAGGTTTTA 59.503 47.619 0.44 0.00 37.36 1.52
484 498 1.611977 GCTGTCCCAACCAGGTTTTAC 59.388 52.381 0.44 1.83 34.66 2.01
485 499 2.938838 CTGTCCCAACCAGGTTTTACA 58.061 47.619 0.44 6.54 34.66 2.41
486 500 3.292460 CTGTCCCAACCAGGTTTTACAA 58.708 45.455 0.44 0.00 34.66 2.41
487 501 3.292460 TGTCCCAACCAGGTTTTACAAG 58.708 45.455 0.44 0.00 34.66 3.16
488 502 3.293337 GTCCCAACCAGGTTTTACAAGT 58.707 45.455 0.44 0.00 34.66 3.16
489 503 3.702548 GTCCCAACCAGGTTTTACAAGTT 59.297 43.478 0.44 0.00 34.66 2.66
490 504 3.955551 TCCCAACCAGGTTTTACAAGTTC 59.044 43.478 0.44 0.00 34.66 3.01
491 505 3.069016 CCCAACCAGGTTTTACAAGTTCC 59.931 47.826 0.44 0.00 34.66 3.62
492 506 3.702045 CCAACCAGGTTTTACAAGTTCCA 59.298 43.478 0.44 0.00 0.00 3.53
493 507 4.202111 CCAACCAGGTTTTACAAGTTCCAG 60.202 45.833 0.44 0.00 0.00 3.86
494 508 2.956333 ACCAGGTTTTACAAGTTCCAGC 59.044 45.455 0.00 0.00 0.00 4.85
495 509 3.222603 CCAGGTTTTACAAGTTCCAGCT 58.777 45.455 0.00 0.00 0.00 4.24
496 510 3.253432 CCAGGTTTTACAAGTTCCAGCTC 59.747 47.826 0.00 0.00 0.00 4.09
497 511 3.253432 CAGGTTTTACAAGTTCCAGCTCC 59.747 47.826 0.00 0.00 0.00 4.70
498 512 3.138468 AGGTTTTACAAGTTCCAGCTCCT 59.862 43.478 0.00 0.00 0.00 3.69
499 513 4.349930 AGGTTTTACAAGTTCCAGCTCCTA 59.650 41.667 0.00 0.00 0.00 2.94
500 514 5.067954 GGTTTTACAAGTTCCAGCTCCTAA 58.932 41.667 0.00 0.00 0.00 2.69
501 515 5.533528 GGTTTTACAAGTTCCAGCTCCTAAA 59.466 40.000 0.00 0.00 0.00 1.85
502 516 6.040054 GGTTTTACAAGTTCCAGCTCCTAAAA 59.960 38.462 0.00 0.00 0.00 1.52
503 517 6.877611 TTTACAAGTTCCAGCTCCTAAAAG 57.122 37.500 0.00 0.00 0.00 2.27
504 518 4.439253 ACAAGTTCCAGCTCCTAAAAGT 57.561 40.909 0.00 0.00 0.00 2.66
505 519 4.793201 ACAAGTTCCAGCTCCTAAAAGTT 58.207 39.130 0.00 0.00 0.00 2.66
506 520 4.580580 ACAAGTTCCAGCTCCTAAAAGTTG 59.419 41.667 0.00 0.00 36.69 3.16
507 521 3.756117 AGTTCCAGCTCCTAAAAGTTGG 58.244 45.455 0.80 0.80 46.00 3.77
508 522 2.200373 TCCAGCTCCTAAAAGTTGGC 57.800 50.000 2.27 0.00 44.72 4.52
509 523 0.804989 CCAGCTCCTAAAAGTTGGCG 59.195 55.000 0.00 0.00 40.21 5.69
510 524 0.169009 CAGCTCCTAAAAGTTGGCGC 59.831 55.000 0.00 0.00 34.57 6.53
511 525 0.960861 AGCTCCTAAAAGTTGGCGCC 60.961 55.000 22.73 22.73 34.88 6.53
512 526 1.241315 GCTCCTAAAAGTTGGCGCCA 61.241 55.000 29.03 29.03 0.00 5.69
513 527 1.463674 CTCCTAAAAGTTGGCGCCAT 58.536 50.000 33.25 18.23 0.00 4.40
514 528 1.133025 CTCCTAAAAGTTGGCGCCATG 59.867 52.381 33.25 13.74 0.00 3.66
515 529 0.458370 CCTAAAAGTTGGCGCCATGC 60.458 55.000 33.25 25.42 45.38 4.06
529 543 3.127081 GCCATGCGCATCTACATAATG 57.873 47.619 22.51 7.46 37.47 1.90
530 544 2.743664 GCCATGCGCATCTACATAATGA 59.256 45.455 22.51 0.00 37.47 2.57
531 545 3.376234 GCCATGCGCATCTACATAATGAT 59.624 43.478 22.51 0.00 37.47 2.45
532 546 4.729746 GCCATGCGCATCTACATAATGATG 60.730 45.833 22.51 5.81 41.96 3.07
533 547 7.103299 GCCATGCGCATCTACATAATGATGT 62.103 44.000 22.51 0.20 42.68 3.06
534 548 4.996062 TGCGCATCTACATAATGATGTG 57.004 40.909 5.66 10.88 46.11 3.21
536 550 4.996062 CGCATCTACATAATGATGTGCA 57.004 40.909 5.89 0.00 46.11 4.57
537 551 5.347012 CGCATCTACATAATGATGTGCAA 57.653 39.130 5.89 0.00 46.11 4.08
538 552 5.142265 CGCATCTACATAATGATGTGCAAC 58.858 41.667 5.89 0.00 46.11 4.17
539 553 5.049886 CGCATCTACATAATGATGTGCAACT 60.050 40.000 5.89 0.00 46.11 3.16
540 554 6.140786 GCATCTACATAATGATGTGCAACTG 58.859 40.000 5.89 0.00 46.11 3.16
541 555 6.017687 GCATCTACATAATGATGTGCAACTGA 60.018 38.462 5.89 0.00 46.11 3.41
542 556 7.467675 GCATCTACATAATGATGTGCAACTGAA 60.468 37.037 5.89 0.00 46.11 3.02
543 557 8.565416 CATCTACATAATGATGTGCAACTGAAT 58.435 33.333 5.89 0.00 46.11 2.57
544 558 8.510243 TCTACATAATGATGTGCAACTGAATT 57.490 30.769 5.89 0.00 46.11 2.17
545 559 9.612066 TCTACATAATGATGTGCAACTGAATTA 57.388 29.630 5.89 0.00 46.11 1.40
546 560 9.655769 CTACATAATGATGTGCAACTGAATTAC 57.344 33.333 5.89 0.00 46.11 1.89
547 561 8.054152 ACATAATGATGTGCAACTGAATTACA 57.946 30.769 0.00 0.00 44.90 2.41
548 562 8.522003 ACATAATGATGTGCAACTGAATTACAA 58.478 29.630 0.00 0.00 44.90 2.41
549 563 9.016623 CATAATGATGTGCAACTGAATTACAAG 57.983 33.333 0.00 0.00 38.04 3.16
550 564 4.797471 TGATGTGCAACTGAATTACAAGC 58.203 39.130 0.00 0.00 38.04 4.01
551 565 3.641437 TGTGCAACTGAATTACAAGCC 57.359 42.857 0.00 0.00 38.04 4.35
552 566 2.295909 TGTGCAACTGAATTACAAGCCC 59.704 45.455 0.00 0.00 38.04 5.19
553 567 1.539388 TGCAACTGAATTACAAGCCCG 59.461 47.619 0.00 0.00 0.00 6.13
554 568 1.135402 GCAACTGAATTACAAGCCCGG 60.135 52.381 0.00 0.00 0.00 5.73
555 569 1.472480 CAACTGAATTACAAGCCCGGG 59.528 52.381 19.09 19.09 0.00 5.73
556 570 0.034477 ACTGAATTACAAGCCCGGGG 60.034 55.000 25.28 9.31 0.00 5.73
557 571 0.751643 CTGAATTACAAGCCCGGGGG 60.752 60.000 25.28 2.24 38.57 5.40
569 583 1.830408 CCGGGGGCAAGAAACAACA 60.830 57.895 0.00 0.00 0.00 3.33
571 585 1.540267 CGGGGGCAAGAAACAACATA 58.460 50.000 0.00 0.00 0.00 2.29
574 588 1.135402 GGGGCAAGAAACAACATAGCG 60.135 52.381 0.00 0.00 0.00 4.26
594 608 4.530094 CGAAAGCTACACACAACTGAAA 57.470 40.909 0.00 0.00 0.00 2.69
595 609 5.095691 CGAAAGCTACACACAACTGAAAT 57.904 39.130 0.00 0.00 0.00 2.17
597 611 5.971202 CGAAAGCTACACACAACTGAAATTT 59.029 36.000 0.00 0.00 0.00 1.82
598 612 6.472163 CGAAAGCTACACACAACTGAAATTTT 59.528 34.615 0.00 0.00 0.00 1.82
599 613 7.642194 CGAAAGCTACACACAACTGAAATTTTA 59.358 33.333 0.00 0.00 0.00 1.52
604 618 9.503427 GCTACACACAACTGAAATTTTATATCC 57.497 33.333 0.00 0.00 0.00 2.59
606 620 8.415950 ACACACAACTGAAATTTTATATCCCA 57.584 30.769 0.00 0.00 0.00 4.37
607 621 8.865090 ACACACAACTGAAATTTTATATCCCAA 58.135 29.630 0.00 0.00 0.00 4.12
608 622 9.703892 CACACAACTGAAATTTTATATCCCAAA 57.296 29.630 0.00 0.00 0.00 3.28
634 648 2.996249 CTCCTAAAGCAGCCAGATCA 57.004 50.000 0.00 0.00 0.00 2.92
635 649 2.836262 CTCCTAAAGCAGCCAGATCAG 58.164 52.381 0.00 0.00 0.00 2.90
637 651 2.093288 TCCTAAAGCAGCCAGATCAGTG 60.093 50.000 0.00 0.00 0.00 3.66
639 653 1.818642 AAAGCAGCCAGATCAGTGTC 58.181 50.000 0.00 0.00 0.00 3.67
640 654 0.982704 AAGCAGCCAGATCAGTGTCT 59.017 50.000 0.00 0.00 0.00 3.41
642 656 1.066286 AGCAGCCAGATCAGTGTCTTC 60.066 52.381 0.00 0.00 0.00 2.87
643 657 1.338484 GCAGCCAGATCAGTGTCTTCA 60.338 52.381 0.00 0.00 0.00 3.02
644 658 2.619147 CAGCCAGATCAGTGTCTTCAG 58.381 52.381 0.00 0.00 0.00 3.02
645 659 2.028294 CAGCCAGATCAGTGTCTTCAGT 60.028 50.000 0.00 0.00 0.00 3.41
646 660 2.028294 AGCCAGATCAGTGTCTTCAGTG 60.028 50.000 0.00 0.00 43.96 3.66
689 703 5.360714 AGTGTTGGATCTCTTTTGAAAAGCA 59.639 36.000 12.62 2.20 0.00 3.91
690 704 5.460091 GTGTTGGATCTCTTTTGAAAAGCAC 59.540 40.000 12.62 8.49 0.00 4.40
693 707 4.834496 TGGATCTCTTTTGAAAAGCACCAT 59.166 37.500 12.62 2.24 0.00 3.55
694 708 6.009589 TGGATCTCTTTTGAAAAGCACCATA 58.990 36.000 12.62 0.00 0.00 2.74
695 709 6.664816 TGGATCTCTTTTGAAAAGCACCATAT 59.335 34.615 12.62 0.61 0.00 1.78
696 710 6.976925 GGATCTCTTTTGAAAAGCACCATATG 59.023 38.462 12.62 0.00 0.00 1.78
697 711 6.899393 TCTCTTTTGAAAAGCACCATATGT 57.101 33.333 12.62 0.00 0.00 2.29
698 712 7.994425 TCTCTTTTGAAAAGCACCATATGTA 57.006 32.000 12.62 0.00 0.00 2.29
699 713 8.579850 TCTCTTTTGAAAAGCACCATATGTAT 57.420 30.769 12.62 0.00 0.00 2.29
700 714 9.023962 TCTCTTTTGAAAAGCACCATATGTATT 57.976 29.630 12.62 0.00 0.00 1.89
705 719 9.814899 TTTGAAAAGCACCATATGTATTATTGG 57.185 29.630 1.24 0.00 0.00 3.16
710 727 5.711976 AGCACCATATGTATTATTGGCCTTC 59.288 40.000 3.32 0.00 0.00 3.46
732 749 2.240162 GAATCCTGAAGGCGGTCGGT 62.240 60.000 0.00 0.00 34.44 4.69
734 751 1.392710 ATCCTGAAGGCGGTCGGTAG 61.393 60.000 0.00 0.00 34.44 3.18
736 753 2.678934 TGAAGGCGGTCGGTAGCT 60.679 61.111 0.00 0.00 0.00 3.32
748 772 1.630244 CGGTAGCTGCAGACTGTTGC 61.630 60.000 20.43 8.80 44.33 4.17
754 778 1.876156 GCTGCAGACTGTTGCTTTAGT 59.124 47.619 20.43 0.00 44.38 2.24
766 790 6.261158 ACTGTTGCTTTAGTTTCTTCTCTTCC 59.739 38.462 0.00 0.00 0.00 3.46
778 802 5.220710 TCTTCTCTTCCTTCTTCACCTTG 57.779 43.478 0.00 0.00 0.00 3.61
788 813 5.896678 TCCTTCTTCACCTTGGAAAAATTCA 59.103 36.000 0.00 0.00 0.00 2.57
789 814 6.382570 TCCTTCTTCACCTTGGAAAAATTCAA 59.617 34.615 0.00 0.00 0.00 2.69
817 842 9.851686 ACATGATAATTAATTGAGGAACAGCTA 57.148 29.630 11.05 0.00 0.00 3.32
824 849 9.466497 AATTAATTGAGGAACAGCTAGATTTCA 57.534 29.630 0.00 0.00 0.00 2.69
825 850 9.638176 ATTAATTGAGGAACAGCTAGATTTCAT 57.362 29.630 0.00 0.00 0.00 2.57
826 851 7.565323 AATTGAGGAACAGCTAGATTTCATC 57.435 36.000 0.00 2.56 32.09 2.92
855 880 7.565398 AGGTATTGACAACATCTACCTAGTCAT 59.435 37.037 14.06 0.00 40.25 3.06
873 898 4.835056 AGTCATTATCGATCATGAGGTCCA 59.165 41.667 19.97 0.00 29.85 4.02
881 906 1.279496 TCATGAGGTCCAACTCCCAG 58.721 55.000 0.00 0.00 36.66 4.45
887 912 1.685224 GTCCAACTCCCAGATGCCA 59.315 57.895 0.00 0.00 0.00 4.92
894 919 1.903877 CTCCCAGATGCCAACGTCCT 61.904 60.000 0.00 0.00 31.66 3.85
895 920 0.616395 TCCCAGATGCCAACGTCCTA 60.616 55.000 0.00 0.00 31.66 2.94
896 921 0.462047 CCCAGATGCCAACGTCCTAC 60.462 60.000 0.00 0.00 31.66 3.18
897 922 0.537188 CCAGATGCCAACGTCCTACT 59.463 55.000 0.00 0.00 31.66 2.57
933 958 6.183360 GCCATTATCGATCCCTCAAAAAGAAA 60.183 38.462 0.00 0.00 0.00 2.52
934 959 7.630513 GCCATTATCGATCCCTCAAAAAGAAAA 60.631 37.037 0.00 0.00 0.00 2.29
935 960 8.416329 CCATTATCGATCCCTCAAAAAGAAAAT 58.584 33.333 0.00 0.00 0.00 1.82
939 964 8.986929 ATCGATCCCTCAAAAAGAAAATATCT 57.013 30.769 0.00 0.00 41.32 1.98
940 965 8.438676 TCGATCCCTCAAAAAGAAAATATCTC 57.561 34.615 0.00 0.00 37.42 2.75
941 966 7.499232 TCGATCCCTCAAAAAGAAAATATCTCC 59.501 37.037 0.00 0.00 37.42 3.71
942 967 7.283127 CGATCCCTCAAAAAGAAAATATCTCCA 59.717 37.037 0.00 0.00 37.42 3.86
943 968 9.140874 GATCCCTCAAAAAGAAAATATCTCCAT 57.859 33.333 0.00 0.00 37.42 3.41
944 969 8.899887 TCCCTCAAAAAGAAAATATCTCCATT 57.100 30.769 0.00 0.00 37.42 3.16
945 970 8.971073 TCCCTCAAAAAGAAAATATCTCCATTC 58.029 33.333 0.00 0.00 37.42 2.67
946 971 8.200120 CCCTCAAAAAGAAAATATCTCCATTCC 58.800 37.037 0.00 0.00 37.42 3.01
947 972 8.975295 CCTCAAAAAGAAAATATCTCCATTCCT 58.025 33.333 0.00 0.00 37.42 3.36
959 984 9.480861 AATATCTCCATTCCTAGTCATTATCGA 57.519 33.333 0.00 0.00 0.00 3.59
960 985 6.576662 TCTCCATTCCTAGTCATTATCGAC 57.423 41.667 0.00 0.00 36.08 4.20
961 986 5.477291 TCTCCATTCCTAGTCATTATCGACC 59.523 44.000 0.00 0.00 36.52 4.79
962 987 4.527038 TCCATTCCTAGTCATTATCGACCC 59.473 45.833 0.00 0.00 36.52 4.46
963 988 4.322801 CCATTCCTAGTCATTATCGACCCC 60.323 50.000 0.00 0.00 36.52 4.95
964 989 2.885616 TCCTAGTCATTATCGACCCCC 58.114 52.381 0.00 0.00 36.52 5.40
965 990 2.449730 TCCTAGTCATTATCGACCCCCT 59.550 50.000 0.00 0.00 36.52 4.79
966 991 2.826725 CCTAGTCATTATCGACCCCCTC 59.173 54.545 0.00 0.00 36.52 4.30
967 992 1.718280 AGTCATTATCGACCCCCTCC 58.282 55.000 0.00 0.00 36.52 4.30
968 993 0.317479 GTCATTATCGACCCCCTCCG 59.683 60.000 0.00 0.00 0.00 4.63
969 994 1.004918 CATTATCGACCCCCTCCGC 60.005 63.158 0.00 0.00 0.00 5.54
970 995 2.214920 ATTATCGACCCCCTCCGCC 61.215 63.158 0.00 0.00 0.00 6.13
1044 1069 4.194720 CTCCTCGGCGAACTCCCG 62.195 72.222 12.13 0.00 46.88 5.14
1069 1094 1.480312 CCATCGTCCTCTGGGAGATCT 60.480 57.143 0.00 0.00 43.12 2.75
1071 1096 1.769026 TCGTCCTCTGGGAGATCTTG 58.231 55.000 0.00 0.00 43.12 3.02
1080 1105 1.144936 GGAGATCTTGGTCCGCCTG 59.855 63.158 0.00 0.00 35.27 4.85
1192 1217 2.071262 CAGCCAGCCCTCTCCATCT 61.071 63.158 0.00 0.00 0.00 2.90
1199 1233 0.692419 GCCCTCTCCATCTTCTCCCA 60.692 60.000 0.00 0.00 0.00 4.37
1200 1234 1.127343 CCCTCTCCATCTTCTCCCAC 58.873 60.000 0.00 0.00 0.00 4.61
1201 1235 1.343884 CCCTCTCCATCTTCTCCCACT 60.344 57.143 0.00 0.00 0.00 4.00
1202 1236 1.761784 CCTCTCCATCTTCTCCCACTG 59.238 57.143 0.00 0.00 0.00 3.66
1203 1237 2.465813 CTCTCCATCTTCTCCCACTGT 58.534 52.381 0.00 0.00 0.00 3.55
1204 1238 3.628513 CCTCTCCATCTTCTCCCACTGTA 60.629 52.174 0.00 0.00 0.00 2.74
1205 1239 4.026744 CTCTCCATCTTCTCCCACTGTAA 58.973 47.826 0.00 0.00 0.00 2.41
1206 1240 4.026744 TCTCCATCTTCTCCCACTGTAAG 58.973 47.826 0.00 0.00 42.29 2.34
1225 1259 2.049767 TACATCGGCAGCGACAGGA 61.050 57.895 0.00 0.00 0.00 3.86
1227 1261 2.169789 CATCGGCAGCGACAGGAAG 61.170 63.158 0.00 0.00 0.00 3.46
1230 1273 2.669569 GGCAGCGACAGGAAGCAA 60.670 61.111 0.00 0.00 35.48 3.91
1231 1274 2.684843 GGCAGCGACAGGAAGCAAG 61.685 63.158 0.00 0.00 35.48 4.01
1240 1283 1.280421 ACAGGAAGCAAGACATCCTCC 59.720 52.381 0.00 0.00 43.04 4.30
1243 1286 1.134250 GGAAGCAAGACATCCTCCTCC 60.134 57.143 0.00 0.00 33.14 4.30
1277 1332 3.991051 CCAGCTCCACACCGTCGT 61.991 66.667 0.00 0.00 0.00 4.34
1290 1345 1.373748 CGTCGTCCGGTTTGACCAT 60.374 57.895 0.00 0.00 38.47 3.55
1291 1346 1.349259 CGTCGTCCGGTTTGACCATC 61.349 60.000 0.00 0.00 38.47 3.51
1295 1350 0.906775 GTCCGGTTTGACCATCCCTA 59.093 55.000 0.00 0.00 38.47 3.53
1297 1352 0.107361 CCGGTTTGACCATCCCTACC 60.107 60.000 0.00 0.00 38.47 3.18
1298 1353 0.616371 CGGTTTGACCATCCCTACCA 59.384 55.000 0.00 0.00 38.47 3.25
1299 1354 1.003812 CGGTTTGACCATCCCTACCAA 59.996 52.381 0.00 0.00 38.47 3.67
1307 1362 0.839946 CATCCCTACCAACTGGAGGG 59.160 60.000 19.62 19.62 45.86 4.30
1335 1390 1.208844 ACGTCCTCCTCCTCCTCTCA 61.209 60.000 0.00 0.00 0.00 3.27
1337 1392 1.480789 GTCCTCCTCCTCCTCTCAAC 58.519 60.000 0.00 0.00 0.00 3.18
1338 1393 0.336737 TCCTCCTCCTCCTCTCAACC 59.663 60.000 0.00 0.00 0.00 3.77
1339 1394 0.041833 CCTCCTCCTCCTCTCAACCA 59.958 60.000 0.00 0.00 0.00 3.67
1342 1397 1.621672 CCTCCTCCTCTCAACCAGGC 61.622 65.000 0.00 0.00 0.00 4.85
1351 1406 3.285484 CTCTCAACCAGGCATAGCATTT 58.715 45.455 0.00 0.00 0.00 2.32
1353 1408 3.444742 TCTCAACCAGGCATAGCATTTTG 59.555 43.478 0.00 0.00 0.00 2.44
1354 1409 3.429492 TCAACCAGGCATAGCATTTTGA 58.571 40.909 0.00 0.00 0.00 2.69
1355 1410 3.831333 TCAACCAGGCATAGCATTTTGAA 59.169 39.130 0.00 0.00 0.00 2.69
1358 1413 3.128349 CCAGGCATAGCATTTTGAATGC 58.872 45.455 15.78 15.78 44.85 3.56
1389 1444 2.266055 CTCTCCGTCTGCAACCCC 59.734 66.667 0.00 0.00 0.00 4.95
1390 1445 2.525629 TCTCCGTCTGCAACCCCA 60.526 61.111 0.00 0.00 0.00 4.96
1404 1459 2.815211 CCCACCACGCGTGAGATG 60.815 66.667 39.10 29.73 46.20 2.90
1497 1564 3.467776 GCTACTGCAAGGGAGGAAG 57.532 57.895 0.00 0.00 39.30 3.46
1498 1565 0.746204 GCTACTGCAAGGGAGGAAGC 60.746 60.000 0.00 0.00 39.30 3.86
1501 1568 2.032528 TGCAAGGGAGGAAGCACG 59.967 61.111 0.00 0.00 31.05 5.34
1503 1570 1.743252 GCAAGGGAGGAAGCACGAG 60.743 63.158 0.00 0.00 0.00 4.18
1504 1571 1.975327 CAAGGGAGGAAGCACGAGA 59.025 57.895 0.00 0.00 0.00 4.04
1505 1572 0.390472 CAAGGGAGGAAGCACGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
1506 1573 1.878656 AAGGGAGGAAGCACGAGACG 61.879 60.000 0.00 0.00 0.00 4.18
1507 1574 2.341101 GGGAGGAAGCACGAGACGA 61.341 63.158 0.00 0.00 0.00 4.20
1508 1575 1.153997 GGAGGAAGCACGAGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
1509 1576 1.512310 GAGGAAGCACGAGACGACG 60.512 63.158 0.00 0.00 39.31 5.12
1510 1577 3.173240 GGAAGCACGAGACGACGC 61.173 66.667 0.00 0.00 36.70 5.19
1511 1578 2.428569 GAAGCACGAGACGACGCA 60.429 61.111 0.00 0.00 36.70 5.24
1512 1579 2.429236 AAGCACGAGACGACGCAG 60.429 61.111 0.00 0.00 36.70 5.18
1532 1622 2.181021 GGACACACCTAGCGACCG 59.819 66.667 0.00 0.00 35.41 4.79
1557 1650 0.933796 GCTTCTATGTCCTTGCGCTC 59.066 55.000 9.73 0.00 0.00 5.03
1605 1698 4.069232 TGCGGCTCCGAGACCAAG 62.069 66.667 13.11 0.00 42.83 3.61
1610 1703 1.324005 GGCTCCGAGACCAAGCTAGT 61.324 60.000 0.00 0.00 36.29 2.57
1618 1711 2.209064 GACCAAGCTAGTGTCGGCGA 62.209 60.000 4.99 4.99 0.00 5.54
1623 1716 0.818296 AGCTAGTGTCGGCGATCTTT 59.182 50.000 14.79 1.93 0.00 2.52
1626 1719 2.876091 CTAGTGTCGGCGATCTTTGAA 58.124 47.619 14.79 0.00 0.00 2.69
1627 1720 1.714794 AGTGTCGGCGATCTTTGAAG 58.285 50.000 14.79 0.00 0.00 3.02
1628 1721 0.095417 GTGTCGGCGATCTTTGAAGC 59.905 55.000 14.79 0.00 0.00 3.86
1631 1724 3.102097 GGCGATCTTTGAAGCCGG 58.898 61.111 0.00 0.00 40.17 6.13
1654 1747 2.434884 CTGTCCGGCTGCGTGATT 60.435 61.111 0.00 0.00 0.00 2.57
1670 1763 1.369091 GATTGCCTGCACTGGTACCG 61.369 60.000 7.57 4.79 0.00 4.02
1691 1802 3.485216 CGAGTGTTTTATCGCAACCCATC 60.485 47.826 0.00 0.00 31.42 3.51
1698 1809 2.032860 ATCGCAACCCATCGGAGGAG 62.033 60.000 0.00 0.00 0.00 3.69
1702 1813 1.080354 AACCCATCGGAGGAGGACA 59.920 57.895 4.56 0.00 0.00 4.02
1703 1814 1.265454 AACCCATCGGAGGAGGACAC 61.265 60.000 4.56 0.00 0.00 3.67
2022 2182 1.602377 CTGGTCTGTTTTGGTCGTTCC 59.398 52.381 0.00 0.00 0.00 3.62
2125 2300 5.641209 ACTCTTGTTCCTCATGATTTCTTCG 59.359 40.000 0.00 0.00 31.42 3.79
2133 2308 1.009829 ATGATTTCTTCGCGGCACTC 58.990 50.000 6.13 0.00 0.00 3.51
2221 2396 3.058432 GCTTCTTAACGTCCTGGTTTTCC 60.058 47.826 0.00 0.00 41.14 3.13
2269 2444 5.363101 TGAGTTGGATCAAGTATGAGCATC 58.637 41.667 0.00 0.00 43.80 3.91
2270 2445 6.408891 ATGAGTTGGATCAAGTATGAGCATCA 60.409 38.462 0.00 0.00 43.80 3.07
2381 2563 1.483415 TCGATACCCTTTCCTTTCGGG 59.517 52.381 0.00 0.00 43.79 5.14
2392 2574 1.555075 TCCTTTCGGGGATGAAGTGAG 59.445 52.381 0.00 0.00 35.33 3.51
2436 2618 4.725790 ATTACCAAGCCATTTTGCTCTC 57.274 40.909 0.00 0.00 41.80 3.20
2742 2994 1.475280 CTTGCCAATGAGGTGTCATGG 59.525 52.381 0.00 0.00 43.04 3.66
2844 4280 7.675870 GCGAGAATTGGACATGATTATATCTGC 60.676 40.741 0.00 0.56 0.00 4.26
2938 4383 6.004574 TCTAGAGAAGACTGAAACAGCACTA 58.995 40.000 0.00 0.00 34.37 2.74
2985 4443 6.238320 GCATCTGCAAGTACTAGAGAAATTGG 60.238 42.308 0.00 0.00 41.59 3.16
2988 4446 6.874134 TCTGCAAGTACTAGAGAAATTGGTTC 59.126 38.462 0.00 0.00 33.59 3.62
2993 4451 4.884668 ACTAGAGAAATTGGTTCCGTGA 57.115 40.909 0.00 0.00 36.86 4.35
2996 4454 2.814336 AGAGAAATTGGTTCCGTGAAGC 59.186 45.455 8.35 8.35 40.03 3.86
2997 4455 2.552315 GAGAAATTGGTTCCGTGAAGCA 59.448 45.455 12.51 12.51 46.16 3.91
3002 4460 1.891919 GGTTCCGTGAAGCAGCACA 60.892 57.895 9.23 0.00 39.49 4.57
3003 4461 1.571460 GTTCCGTGAAGCAGCACAG 59.429 57.895 9.23 0.00 38.69 3.66
3012 4470 0.386838 AAGCAGCACAGCAGTTTTCC 59.613 50.000 0.00 0.00 36.85 3.13
3013 4471 1.370900 GCAGCACAGCAGTTTTCCG 60.371 57.895 0.00 0.00 0.00 4.30
3014 4472 1.785041 GCAGCACAGCAGTTTTCCGA 61.785 55.000 0.00 0.00 0.00 4.55
3015 4473 0.040958 CAGCACAGCAGTTTTCCGAC 60.041 55.000 0.00 0.00 0.00 4.79
3016 4474 0.463654 AGCACAGCAGTTTTCCGACA 60.464 50.000 0.00 0.00 0.00 4.35
3017 4475 0.380378 GCACAGCAGTTTTCCGACAA 59.620 50.000 0.00 0.00 0.00 3.18
3018 4476 1.859998 GCACAGCAGTTTTCCGACAAC 60.860 52.381 0.00 0.00 0.00 3.32
3019 4477 1.400142 CACAGCAGTTTTCCGACAACA 59.600 47.619 0.48 0.00 0.00 3.33
3020 4478 1.670811 ACAGCAGTTTTCCGACAACAG 59.329 47.619 0.48 0.00 0.00 3.16
3022 4480 2.097466 CAGCAGTTTTCCGACAACAGTT 59.903 45.455 0.48 0.00 0.00 3.16
3023 4481 2.354821 AGCAGTTTTCCGACAACAGTTC 59.645 45.455 0.48 0.00 0.00 3.01
3027 4485 4.007659 AGTTTTCCGACAACAGTTCTTGT 58.992 39.130 0.48 0.00 43.45 3.16
3028 4486 4.094442 AGTTTTCCGACAACAGTTCTTGTC 59.906 41.667 0.48 2.54 44.52 3.18
3032 4490 2.652662 GACAACAGTTCTTGTCGCTG 57.347 50.000 0.00 0.00 40.44 5.18
3033 4491 1.261619 GACAACAGTTCTTGTCGCTGG 59.738 52.381 0.00 0.00 40.44 4.85
3045 5231 2.436646 CGCTGGCCGTCCTTTCAT 60.437 61.111 0.00 0.00 0.00 2.57
3046 5232 1.153449 CGCTGGCCGTCCTTTCATA 60.153 57.895 0.00 0.00 0.00 2.15
3054 5240 3.476552 GCCGTCCTTTCATAATCATCCA 58.523 45.455 0.00 0.00 0.00 3.41
3063 5249 6.427547 CCTTTCATAATCATCCAGCTTCTCTC 59.572 42.308 0.00 0.00 0.00 3.20
3075 5261 1.484240 GCTTCTCTCCAGCTACACCAT 59.516 52.381 0.00 0.00 34.15 3.55
3076 5262 2.093235 GCTTCTCTCCAGCTACACCATT 60.093 50.000 0.00 0.00 34.15 3.16
3082 5268 5.023533 TCTCCAGCTACACCATTAATGTC 57.976 43.478 14.25 0.00 0.00 3.06
3086 5272 4.464008 CAGCTACACCATTAATGTCCCAT 58.536 43.478 14.25 0.00 0.00 4.00
3101 5287 3.843619 TGTCCCATATTCTCAACTGACCA 59.156 43.478 0.00 0.00 0.00 4.02
3115 5301 3.981211 ACTGACCATGCAACAAATGTTC 58.019 40.909 0.00 0.00 35.83 3.18
3119 5305 5.771469 TGACCATGCAACAAATGTTCTAAG 58.229 37.500 0.00 0.00 35.83 2.18
3120 5306 5.301551 TGACCATGCAACAAATGTTCTAAGT 59.698 36.000 0.00 0.00 35.83 2.24
3121 5307 5.772521 ACCATGCAACAAATGTTCTAAGTC 58.227 37.500 0.00 0.00 35.83 3.01
3122 5308 4.853196 CCATGCAACAAATGTTCTAAGTCG 59.147 41.667 0.00 0.00 35.83 4.18
3123 5309 3.884169 TGCAACAAATGTTCTAAGTCGC 58.116 40.909 0.00 0.00 35.83 5.19
3125 5311 3.304391 GCAACAAATGTTCTAAGTCGCCA 60.304 43.478 0.00 0.00 35.83 5.69
3126 5312 4.791411 GCAACAAATGTTCTAAGTCGCCAA 60.791 41.667 0.00 0.00 35.83 4.52
3127 5313 5.460646 CAACAAATGTTCTAAGTCGCCAAT 58.539 37.500 0.00 0.00 35.83 3.16
3133 5320 7.865706 AATGTTCTAAGTCGCCAATAAATCT 57.134 32.000 0.00 0.00 0.00 2.40
3134 5321 6.903883 TGTTCTAAGTCGCCAATAAATCTC 57.096 37.500 0.00 0.00 0.00 2.75
3139 5326 4.859629 AGTCGCCAATAAATCTCGTTTC 57.140 40.909 0.00 0.00 0.00 2.78
3140 5327 4.250464 AGTCGCCAATAAATCTCGTTTCA 58.750 39.130 0.00 0.00 0.00 2.69
3159 5346 2.026262 TCAACTTTGGGGATAGTGAGCC 60.026 50.000 0.00 0.00 0.00 4.70
3168 5355 4.476846 TGGGGATAGTGAGCCTTTGATAAA 59.523 41.667 0.00 0.00 0.00 1.40
3172 5359 7.890655 GGGGATAGTGAGCCTTTGATAAATAAT 59.109 37.037 0.00 0.00 0.00 1.28
3173 5360 9.301897 GGGATAGTGAGCCTTTGATAAATAATT 57.698 33.333 0.00 0.00 0.00 1.40
3178 5365 9.860898 AGTGAGCCTTTGATAAATAATTGTTTC 57.139 29.630 3.18 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.400961 GCCGGCCTTCAGCAGACT 62.401 66.667 18.11 0.00 46.50 3.24
76 77 4.712425 CAGCAAGCAAGCACGCCC 62.712 66.667 3.19 0.00 36.85 6.13
77 78 3.606065 CTCAGCAAGCAAGCACGCC 62.606 63.158 3.19 0.00 36.85 5.68
78 79 2.126965 CTCAGCAAGCAAGCACGC 60.127 61.111 3.19 0.00 36.85 5.34
79 80 1.206072 GTCTCAGCAAGCAAGCACG 59.794 57.895 3.19 0.00 36.85 5.34
104 105 3.402110 AGACACGTGATGAAAGAATGCA 58.598 40.909 25.01 0.00 0.00 3.96
107 108 6.650807 ACAACATAGACACGTGATGAAAGAAT 59.349 34.615 25.01 0.00 0.00 2.40
115 116 9.249457 CAAGATAATACAACATAGACACGTGAT 57.751 33.333 25.01 12.89 0.00 3.06
117 118 7.010091 TGCAAGATAATACAACATAGACACGTG 59.990 37.037 15.48 15.48 0.00 4.49
118 119 7.039270 TGCAAGATAATACAACATAGACACGT 58.961 34.615 0.00 0.00 0.00 4.49
119 120 7.463469 TGCAAGATAATACAACATAGACACG 57.537 36.000 0.00 0.00 0.00 4.49
120 121 9.655769 CAATGCAAGATAATACAACATAGACAC 57.344 33.333 0.00 0.00 0.00 3.67
135 142 9.183368 TCCACAATAATTACACAATGCAAGATA 57.817 29.630 0.00 0.00 0.00 1.98
136 143 8.065473 TCCACAATAATTACACAATGCAAGAT 57.935 30.769 0.00 0.00 0.00 2.40
137 144 7.362834 CCTCCACAATAATTACACAATGCAAGA 60.363 37.037 0.00 0.00 0.00 3.02
138 145 6.753279 CCTCCACAATAATTACACAATGCAAG 59.247 38.462 0.00 0.00 0.00 4.01
139 146 6.350864 CCCTCCACAATAATTACACAATGCAA 60.351 38.462 0.00 0.00 0.00 4.08
140 147 5.126869 CCCTCCACAATAATTACACAATGCA 59.873 40.000 0.00 0.00 0.00 3.96
141 148 5.451798 CCCCTCCACAATAATTACACAATGC 60.452 44.000 0.00 0.00 0.00 3.56
142 149 5.656416 ACCCCTCCACAATAATTACACAATG 59.344 40.000 0.00 0.00 0.00 2.82
143 150 5.656416 CACCCCTCCACAATAATTACACAAT 59.344 40.000 0.00 0.00 0.00 2.71
170 180 2.028112 GCAGGTCCTGACAGTTCACATA 60.028 50.000 23.77 0.00 32.44 2.29
213 223 0.799534 AGTGCAATCCGCGTACGTAC 60.800 55.000 17.90 15.90 46.97 3.67
215 225 1.804326 GAGTGCAATCCGCGTACGT 60.804 57.895 17.90 0.00 46.97 3.57
216 226 1.472276 GAGAGTGCAATCCGCGTACG 61.472 60.000 11.84 11.84 46.97 3.67
217 227 1.146358 GGAGAGTGCAATCCGCGTAC 61.146 60.000 11.14 0.00 46.97 3.67
218 228 1.141019 GGAGAGTGCAATCCGCGTA 59.859 57.895 11.14 0.00 46.97 4.42
219 229 2.125512 GGAGAGTGCAATCCGCGT 60.126 61.111 11.14 0.00 46.97 6.01
220 230 2.859273 AAGGGAGAGTGCAATCCGCG 62.859 60.000 11.14 0.00 46.97 6.46
221 231 0.678048 AAAGGGAGAGTGCAATCCGC 60.678 55.000 11.14 10.61 42.89 5.54
222 232 1.373570 GAAAGGGAGAGTGCAATCCG 58.626 55.000 11.14 0.00 36.38 4.18
223 233 1.373570 CGAAAGGGAGAGTGCAATCC 58.626 55.000 11.14 7.92 34.64 3.01
244 254 2.361610 AACCAATCGCCAGCAGGG 60.362 61.111 0.00 0.00 40.85 4.45
245 255 1.377725 AGAACCAATCGCCAGCAGG 60.378 57.895 0.00 0.00 38.23 4.85
246 256 1.798735 CAGAACCAATCGCCAGCAG 59.201 57.895 0.00 0.00 0.00 4.24
247 257 2.334946 GCAGAACCAATCGCCAGCA 61.335 57.895 0.00 0.00 0.00 4.41
248 258 2.334946 TGCAGAACCAATCGCCAGC 61.335 57.895 0.00 0.00 0.00 4.85
249 259 1.236616 TGTGCAGAACCAATCGCCAG 61.237 55.000 0.00 0.00 0.00 4.85
250 260 1.228094 TGTGCAGAACCAATCGCCA 60.228 52.632 0.00 0.00 0.00 5.69
251 261 1.503542 CTGTGCAGAACCAATCGCC 59.496 57.895 0.00 0.00 0.00 5.54
252 262 0.955428 TCCTGTGCAGAACCAATCGC 60.955 55.000 0.02 0.00 0.00 4.58
253 263 0.798776 GTCCTGTGCAGAACCAATCG 59.201 55.000 0.02 0.00 0.00 3.34
254 264 1.537202 GTGTCCTGTGCAGAACCAATC 59.463 52.381 0.02 0.00 0.00 2.67
255 265 1.609208 GTGTCCTGTGCAGAACCAAT 58.391 50.000 0.02 0.00 0.00 3.16
256 266 0.465460 GGTGTCCTGTGCAGAACCAA 60.465 55.000 0.02 0.00 0.00 3.67
265 275 1.674057 GGTGGAGAGGTGTCCTGTG 59.326 63.158 0.00 0.00 37.52 3.66
282 296 3.058846 CGACAGATACATAGTGACCTCGG 60.059 52.174 0.00 0.00 0.00 4.63
290 304 6.255887 GCTAAAGCAAACGACAGATACATAGT 59.744 38.462 0.00 0.00 41.59 2.12
303 317 2.713976 CGACAAACAGCTAAAGCAAACG 59.286 45.455 4.54 0.00 45.16 3.60
312 326 2.228138 AACGTTCCGACAAACAGCTA 57.772 45.000 0.00 0.00 0.00 3.32
317 331 1.654501 GCACGTAACGTTCCGACAAAC 60.655 52.381 20.50 2.56 38.32 2.93
319 333 0.248990 AGCACGTAACGTTCCGACAA 60.249 50.000 20.50 0.00 38.32 3.18
328 342 1.323534 GGATACAGCAAGCACGTAACG 59.676 52.381 0.00 0.00 0.00 3.18
337 351 4.978083 AAGCATCAAAGGATACAGCAAG 57.022 40.909 0.00 0.00 41.41 4.01
341 355 6.998968 AGAGAAAAGCATCAAAGGATACAG 57.001 37.500 0.00 0.00 41.41 2.74
372 386 5.120986 GCGTTCCTTTCCACAAAAAGAAAAA 59.879 36.000 0.00 0.00 38.30 1.94
373 387 4.627900 GCGTTCCTTTCCACAAAAAGAAAA 59.372 37.500 0.00 0.00 38.30 2.29
374 388 4.177783 GCGTTCCTTTCCACAAAAAGAAA 58.822 39.130 0.00 0.00 38.30 2.52
375 389 3.193691 TGCGTTCCTTTCCACAAAAAGAA 59.806 39.130 0.00 0.00 38.30 2.52
376 390 2.755655 TGCGTTCCTTTCCACAAAAAGA 59.244 40.909 0.00 0.00 38.30 2.52
377 391 3.157932 TGCGTTCCTTTCCACAAAAAG 57.842 42.857 0.00 0.00 36.26 2.27
378 392 3.594603 TTGCGTTCCTTTCCACAAAAA 57.405 38.095 0.00 0.00 0.00 1.94
379 393 3.118956 ACATTGCGTTCCTTTCCACAAAA 60.119 39.130 0.00 0.00 0.00 2.44
380 394 2.428890 ACATTGCGTTCCTTTCCACAAA 59.571 40.909 0.00 0.00 0.00 2.83
381 395 2.028130 ACATTGCGTTCCTTTCCACAA 58.972 42.857 0.00 0.00 0.00 3.33
382 396 1.686355 ACATTGCGTTCCTTTCCACA 58.314 45.000 0.00 0.00 0.00 4.17
383 397 4.412207 GAATACATTGCGTTCCTTTCCAC 58.588 43.478 0.00 0.00 0.00 4.02
384 398 3.442273 GGAATACATTGCGTTCCTTTCCA 59.558 43.478 11.46 0.00 38.65 3.53
385 399 3.442273 TGGAATACATTGCGTTCCTTTCC 59.558 43.478 16.88 0.00 41.52 3.13
386 400 4.695217 TGGAATACATTGCGTTCCTTTC 57.305 40.909 16.88 0.00 41.52 2.62
405 419 3.262420 GTCCGGCAGCACTATATAATGG 58.738 50.000 0.00 0.00 0.00 3.16
422 436 4.680237 TTGCTGGCGAGGTGTCCG 62.680 66.667 0.00 0.00 0.00 4.79
428 442 0.109597 GAATGTTGTTGCTGGCGAGG 60.110 55.000 0.00 0.00 0.00 4.63
429 443 0.592637 TGAATGTTGTTGCTGGCGAG 59.407 50.000 0.00 0.00 0.00 5.03
430 444 0.592637 CTGAATGTTGTTGCTGGCGA 59.407 50.000 0.00 0.00 0.00 5.54
431 445 0.311790 ACTGAATGTTGTTGCTGGCG 59.688 50.000 0.00 0.00 0.00 5.69
432 446 2.293122 TGTACTGAATGTTGTTGCTGGC 59.707 45.455 0.00 0.00 0.00 4.85
433 447 4.566545 TTGTACTGAATGTTGTTGCTGG 57.433 40.909 0.00 0.00 0.00 4.85
434 448 4.442073 GCTTTGTACTGAATGTTGTTGCTG 59.558 41.667 0.00 0.00 0.00 4.41
435 449 4.499696 GGCTTTGTACTGAATGTTGTTGCT 60.500 41.667 0.00 0.00 0.00 3.91
436 450 3.735746 GGCTTTGTACTGAATGTTGTTGC 59.264 43.478 0.00 0.00 0.00 4.17
437 451 4.977963 CAGGCTTTGTACTGAATGTTGTTG 59.022 41.667 0.00 0.00 36.86 3.33
438 452 4.499696 GCAGGCTTTGTACTGAATGTTGTT 60.500 41.667 0.00 0.00 36.86 2.83
439 453 3.004734 GCAGGCTTTGTACTGAATGTTGT 59.995 43.478 0.00 0.00 36.86 3.32
440 454 3.568538 GCAGGCTTTGTACTGAATGTTG 58.431 45.455 0.00 0.00 36.86 3.33
441 455 2.226437 CGCAGGCTTTGTACTGAATGTT 59.774 45.455 0.00 0.00 36.86 2.71
442 456 1.806542 CGCAGGCTTTGTACTGAATGT 59.193 47.619 0.00 0.00 36.86 2.71
443 457 2.076100 TCGCAGGCTTTGTACTGAATG 58.924 47.619 0.00 0.00 36.86 2.67
444 458 2.350522 CTCGCAGGCTTTGTACTGAAT 58.649 47.619 0.00 0.00 36.86 2.57
445 459 1.795768 CTCGCAGGCTTTGTACTGAA 58.204 50.000 0.00 0.00 36.86 3.02
446 460 0.670546 GCTCGCAGGCTTTGTACTGA 60.671 55.000 0.00 0.00 36.86 3.41
447 461 0.671781 AGCTCGCAGGCTTTGTACTG 60.672 55.000 0.00 0.00 39.86 2.74
448 462 0.671781 CAGCTCGCAGGCTTTGTACT 60.672 55.000 0.00 0.00 41.00 2.73
449 463 0.951040 ACAGCTCGCAGGCTTTGTAC 60.951 55.000 0.00 0.00 41.00 2.90
450 464 0.670546 GACAGCTCGCAGGCTTTGTA 60.671 55.000 0.00 0.00 41.00 2.41
451 465 1.963338 GACAGCTCGCAGGCTTTGT 60.963 57.895 0.00 0.00 41.00 2.83
452 466 2.684843 GGACAGCTCGCAGGCTTTG 61.685 63.158 0.00 0.00 41.00 2.77
453 467 2.359230 GGACAGCTCGCAGGCTTT 60.359 61.111 0.00 0.00 41.00 3.51
454 468 4.400961 GGGACAGCTCGCAGGCTT 62.401 66.667 0.00 0.00 41.00 4.35
456 470 4.704833 TTGGGACAGCTCGCAGGC 62.705 66.667 0.00 0.00 42.39 4.85
457 471 2.743928 GTTGGGACAGCTCGCAGG 60.744 66.667 0.00 0.00 42.39 4.85
458 472 2.743928 GGTTGGGACAGCTCGCAG 60.744 66.667 0.00 0.00 42.39 5.18
459 473 3.535629 CTGGTTGGGACAGCTCGCA 62.536 63.158 0.00 0.00 42.39 5.10
460 474 2.743928 CTGGTTGGGACAGCTCGC 60.744 66.667 0.00 0.00 42.39 5.03
461 475 2.046892 CCTGGTTGGGACAGCTCG 60.047 66.667 0.00 0.00 42.39 5.03
462 476 0.178990 AAACCTGGTTGGGACAGCTC 60.179 55.000 13.79 0.00 42.39 4.09
463 477 0.261696 AAAACCTGGTTGGGACAGCT 59.738 50.000 13.79 0.00 42.39 4.24
464 478 1.611977 GTAAAACCTGGTTGGGACAGC 59.388 52.381 13.79 0.00 42.39 4.40
465 479 2.938838 TGTAAAACCTGGTTGGGACAG 58.061 47.619 13.79 0.00 42.39 3.51
466 480 3.292460 CTTGTAAAACCTGGTTGGGACA 58.708 45.455 13.79 14.02 41.11 4.02
467 481 3.293337 ACTTGTAAAACCTGGTTGGGAC 58.707 45.455 13.79 11.65 41.11 4.46
468 482 3.673543 ACTTGTAAAACCTGGTTGGGA 57.326 42.857 13.79 0.00 41.11 4.37
469 483 3.069016 GGAACTTGTAAAACCTGGTTGGG 59.931 47.826 13.79 2.98 41.11 4.12
470 484 3.702045 TGGAACTTGTAAAACCTGGTTGG 59.298 43.478 13.79 2.64 42.93 3.77
471 485 4.736464 GCTGGAACTTGTAAAACCTGGTTG 60.736 45.833 13.79 1.65 0.00 3.77
472 486 3.383505 GCTGGAACTTGTAAAACCTGGTT 59.616 43.478 6.18 6.18 0.00 3.67
473 487 2.956333 GCTGGAACTTGTAAAACCTGGT 59.044 45.455 0.00 0.00 0.00 4.00
474 488 3.222603 AGCTGGAACTTGTAAAACCTGG 58.777 45.455 0.00 0.00 0.00 4.45
475 489 3.253432 GGAGCTGGAACTTGTAAAACCTG 59.747 47.826 0.00 0.00 0.00 4.00
476 490 3.138468 AGGAGCTGGAACTTGTAAAACCT 59.862 43.478 0.00 0.00 0.00 3.50
477 491 3.487372 AGGAGCTGGAACTTGTAAAACC 58.513 45.455 0.00 0.00 0.00 3.27
478 492 6.628919 TTTAGGAGCTGGAACTTGTAAAAC 57.371 37.500 0.00 0.00 0.00 2.43
479 493 6.831868 ACTTTTAGGAGCTGGAACTTGTAAAA 59.168 34.615 0.00 0.00 0.00 1.52
480 494 6.362248 ACTTTTAGGAGCTGGAACTTGTAAA 58.638 36.000 0.00 0.00 0.00 2.01
481 495 5.937111 ACTTTTAGGAGCTGGAACTTGTAA 58.063 37.500 0.00 0.00 0.00 2.41
482 496 5.562298 ACTTTTAGGAGCTGGAACTTGTA 57.438 39.130 0.00 0.00 0.00 2.41
483 497 4.439253 ACTTTTAGGAGCTGGAACTTGT 57.561 40.909 0.00 0.00 0.00 3.16
484 498 4.022849 CCAACTTTTAGGAGCTGGAACTTG 60.023 45.833 0.00 0.00 35.37 3.16
485 499 4.145052 CCAACTTTTAGGAGCTGGAACTT 58.855 43.478 0.00 0.00 35.37 2.66
486 500 3.756117 CCAACTTTTAGGAGCTGGAACT 58.244 45.455 0.00 0.00 35.37 3.01
487 501 2.229062 GCCAACTTTTAGGAGCTGGAAC 59.771 50.000 0.00 0.00 35.37 3.62
488 502 2.514803 GCCAACTTTTAGGAGCTGGAA 58.485 47.619 0.00 0.00 35.37 3.53
489 503 1.610624 CGCCAACTTTTAGGAGCTGGA 60.611 52.381 0.00 0.00 35.37 3.86
490 504 0.804989 CGCCAACTTTTAGGAGCTGG 59.195 55.000 0.00 0.00 36.25 4.85
491 505 0.169009 GCGCCAACTTTTAGGAGCTG 59.831 55.000 0.00 0.00 45.67 4.24
492 506 2.556286 GCGCCAACTTTTAGGAGCT 58.444 52.632 0.00 0.00 45.67 4.09
494 508 1.133025 CATGGCGCCAACTTTTAGGAG 59.867 52.381 36.33 9.13 0.00 3.69
495 509 1.173043 CATGGCGCCAACTTTTAGGA 58.827 50.000 36.33 5.54 0.00 2.94
496 510 0.458370 GCATGGCGCCAACTTTTAGG 60.458 55.000 36.33 11.07 32.94 2.69
497 511 3.034569 GCATGGCGCCAACTTTTAG 57.965 52.632 36.33 17.42 32.94 1.85
509 523 2.743664 TCATTATGTAGATGCGCATGGC 59.256 45.455 30.76 14.85 43.96 4.40
510 524 4.393990 ACATCATTATGTAGATGCGCATGG 59.606 41.667 30.76 5.53 44.66 3.66
511 525 5.321516 CACATCATTATGTAGATGCGCATG 58.678 41.667 30.76 11.92 44.70 4.06
512 526 4.142752 GCACATCATTATGTAGATGCGCAT 60.143 41.667 25.66 25.66 44.70 4.73
513 527 3.187022 GCACATCATTATGTAGATGCGCA 59.813 43.478 14.96 14.96 44.70 6.09
514 528 3.187022 TGCACATCATTATGTAGATGCGC 59.813 43.478 0.00 0.00 44.70 6.09
515 529 4.996062 TGCACATCATTATGTAGATGCG 57.004 40.909 0.00 0.00 44.70 4.73
516 530 6.017687 TCAGTTGCACATCATTATGTAGATGC 60.018 38.462 0.00 0.04 44.70 3.91
517 531 7.486802 TCAGTTGCACATCATTATGTAGATG 57.513 36.000 0.00 0.00 44.70 2.90
518 532 8.687292 ATTCAGTTGCACATCATTATGTAGAT 57.313 30.769 0.00 0.00 44.70 1.98
519 533 8.510243 AATTCAGTTGCACATCATTATGTAGA 57.490 30.769 0.00 0.00 44.70 2.59
520 534 9.655769 GTAATTCAGTTGCACATCATTATGTAG 57.344 33.333 0.00 0.00 44.70 2.74
521 535 9.171877 TGTAATTCAGTTGCACATCATTATGTA 57.828 29.630 0.00 0.00 44.70 2.29
523 537 8.914328 TTGTAATTCAGTTGCACATCATTATG 57.086 30.769 0.00 0.00 39.17 1.90
524 538 7.703621 GCTTGTAATTCAGTTGCACATCATTAT 59.296 33.333 0.00 0.00 31.85 1.28
525 539 7.028962 GCTTGTAATTCAGTTGCACATCATTA 58.971 34.615 0.00 0.00 31.85 1.90
526 540 5.865552 GCTTGTAATTCAGTTGCACATCATT 59.134 36.000 0.00 0.00 31.85 2.57
527 541 5.404946 GCTTGTAATTCAGTTGCACATCAT 58.595 37.500 0.00 0.00 31.85 2.45
528 542 4.321156 GGCTTGTAATTCAGTTGCACATCA 60.321 41.667 0.00 0.00 31.85 3.07
529 543 4.168760 GGCTTGTAATTCAGTTGCACATC 58.831 43.478 0.00 0.00 31.85 3.06
530 544 3.056607 GGGCTTGTAATTCAGTTGCACAT 60.057 43.478 0.00 0.00 31.85 3.21
531 545 2.295909 GGGCTTGTAATTCAGTTGCACA 59.704 45.455 0.00 0.00 31.85 4.57
532 546 2.668279 CGGGCTTGTAATTCAGTTGCAC 60.668 50.000 0.00 0.00 31.85 4.57
533 547 1.539388 CGGGCTTGTAATTCAGTTGCA 59.461 47.619 0.00 0.00 0.00 4.08
534 548 1.135402 CCGGGCTTGTAATTCAGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
535 549 1.472480 CCCGGGCTTGTAATTCAGTTG 59.528 52.381 8.08 0.00 0.00 3.16
536 550 1.615919 CCCCGGGCTTGTAATTCAGTT 60.616 52.381 17.73 0.00 0.00 3.16
537 551 0.034477 CCCCGGGCTTGTAATTCAGT 60.034 55.000 17.73 0.00 0.00 3.41
538 552 0.751643 CCCCCGGGCTTGTAATTCAG 60.752 60.000 17.73 0.00 0.00 3.02
539 553 1.304952 CCCCCGGGCTTGTAATTCA 59.695 57.895 17.73 0.00 0.00 2.57
540 554 4.252983 CCCCCGGGCTTGTAATTC 57.747 61.111 17.73 0.00 0.00 2.17
550 564 2.203567 TTGTTTCTTGCCCCCGGG 60.204 61.111 15.80 15.80 38.57 5.73
551 565 1.184970 ATGTTGTTTCTTGCCCCCGG 61.185 55.000 0.00 0.00 0.00 5.73
552 566 1.472480 CTATGTTGTTTCTTGCCCCCG 59.528 52.381 0.00 0.00 0.00 5.73
553 567 1.204704 GCTATGTTGTTTCTTGCCCCC 59.795 52.381 0.00 0.00 0.00 5.40
554 568 1.135402 CGCTATGTTGTTTCTTGCCCC 60.135 52.381 0.00 0.00 0.00 5.80
555 569 1.810151 TCGCTATGTTGTTTCTTGCCC 59.190 47.619 0.00 0.00 0.00 5.36
556 570 3.552604 TTCGCTATGTTGTTTCTTGCC 57.447 42.857 0.00 0.00 0.00 4.52
557 571 3.361940 GCTTTCGCTATGTTGTTTCTTGC 59.638 43.478 0.00 0.00 0.00 4.01
558 572 4.787598 AGCTTTCGCTATGTTGTTTCTTG 58.212 39.130 0.00 0.00 46.79 3.02
574 588 7.755582 AAAATTTCAGTTGTGTGTAGCTTTC 57.244 32.000 0.00 0.00 0.00 2.62
581 595 8.415950 TGGGATATAAAATTTCAGTTGTGTGT 57.584 30.769 0.00 0.00 0.00 3.72
615 629 2.170187 ACTGATCTGGCTGCTTTAGGAG 59.830 50.000 0.00 0.00 36.50 3.69
616 630 2.093288 CACTGATCTGGCTGCTTTAGGA 60.093 50.000 0.00 0.00 0.00 2.94
620 634 1.350351 AGACACTGATCTGGCTGCTTT 59.650 47.619 0.00 0.00 0.00 3.51
621 635 0.982704 AGACACTGATCTGGCTGCTT 59.017 50.000 0.00 0.00 0.00 3.91
622 636 0.982704 AAGACACTGATCTGGCTGCT 59.017 50.000 0.00 0.00 26.20 4.24
623 637 1.338484 TGAAGACACTGATCTGGCTGC 60.338 52.381 4.49 0.00 26.20 5.25
626 640 2.344950 CACTGAAGACACTGATCTGGC 58.655 52.381 4.49 0.00 0.00 4.85
627 641 2.564504 TCCACTGAAGACACTGATCTGG 59.435 50.000 4.49 0.00 0.00 3.86
628 642 3.006217 TGTCCACTGAAGACACTGATCTG 59.994 47.826 0.00 0.00 39.29 2.90
630 644 3.667497 TGTCCACTGAAGACACTGATC 57.333 47.619 0.00 0.00 39.29 2.92
631 645 4.384056 CTTTGTCCACTGAAGACACTGAT 58.616 43.478 4.46 0.00 43.70 2.90
632 646 3.797039 CTTTGTCCACTGAAGACACTGA 58.203 45.455 4.46 0.00 43.70 3.41
633 647 2.289002 GCTTTGTCCACTGAAGACACTG 59.711 50.000 4.46 2.97 43.70 3.66
634 648 2.565841 GCTTTGTCCACTGAAGACACT 58.434 47.619 4.46 0.00 43.70 3.55
635 649 1.604278 GGCTTTGTCCACTGAAGACAC 59.396 52.381 4.46 0.00 43.70 3.67
637 651 1.239347 GGGCTTTGTCCACTGAAGAC 58.761 55.000 0.00 0.00 34.72 3.01
639 653 0.178992 TGGGGCTTTGTCCACTGAAG 60.179 55.000 0.00 0.00 0.00 3.02
640 654 0.260230 TTGGGGCTTTGTCCACTGAA 59.740 50.000 0.00 0.00 32.00 3.02
642 656 1.463553 GGTTGGGGCTTTGTCCACTG 61.464 60.000 0.00 0.00 32.00 3.66
643 657 1.152546 GGTTGGGGCTTTGTCCACT 60.153 57.895 0.00 0.00 32.00 4.00
644 658 1.152546 AGGTTGGGGCTTTGTCCAC 60.153 57.895 0.00 0.00 32.00 4.02
645 659 1.152830 GAGGTTGGGGCTTTGTCCA 59.847 57.895 0.00 0.00 0.00 4.02
646 660 1.606601 GGAGGTTGGGGCTTTGTCC 60.607 63.158 0.00 0.00 0.00 4.02
685 699 5.644188 AGGCCAATAATACATATGGTGCTT 58.356 37.500 5.01 0.00 0.00 3.91
689 703 7.526041 TCTTGAAGGCCAATAATACATATGGT 58.474 34.615 5.01 0.00 33.68 3.55
690 704 8.408043 TTCTTGAAGGCCAATAATACATATGG 57.592 34.615 5.01 0.00 33.68 2.74
693 707 8.448008 AGGATTCTTGAAGGCCAATAATACATA 58.552 33.333 5.01 0.00 35.66 2.29
694 708 7.232127 CAGGATTCTTGAAGGCCAATAATACAT 59.768 37.037 5.01 0.00 35.66 2.29
695 709 6.547141 CAGGATTCTTGAAGGCCAATAATACA 59.453 38.462 5.01 0.00 35.66 2.29
696 710 6.772716 TCAGGATTCTTGAAGGCCAATAATAC 59.227 38.462 5.01 0.00 34.26 1.89
697 711 6.910191 TCAGGATTCTTGAAGGCCAATAATA 58.090 36.000 5.01 0.00 33.43 0.98
698 712 5.769835 TCAGGATTCTTGAAGGCCAATAAT 58.230 37.500 5.01 0.00 35.21 1.28
699 713 5.191727 TCAGGATTCTTGAAGGCCAATAA 57.808 39.130 5.01 0.00 33.68 1.40
700 714 4.860802 TCAGGATTCTTGAAGGCCAATA 57.139 40.909 5.01 0.00 33.68 1.90
701 715 3.744940 TCAGGATTCTTGAAGGCCAAT 57.255 42.857 5.01 0.00 33.68 3.16
702 716 3.424703 CTTCAGGATTCTTGAAGGCCAA 58.575 45.455 23.83 0.00 36.38 4.52
710 727 1.373570 GACCGCCTTCAGGATTCTTG 58.626 55.000 0.00 0.00 37.39 3.02
732 749 2.260844 AAAGCAACAGTCTGCAGCTA 57.739 45.000 17.12 0.00 45.18 3.32
734 751 1.876156 ACTAAAGCAACAGTCTGCAGC 59.124 47.619 9.47 4.26 45.18 5.25
736 753 4.199310 AGAAACTAAAGCAACAGTCTGCA 58.801 39.130 0.00 0.00 45.18 4.41
748 772 8.769891 GTGAAGAAGGAAGAGAAGAAACTAAAG 58.230 37.037 0.00 0.00 0.00 1.85
754 778 5.896073 AGGTGAAGAAGGAAGAGAAGAAA 57.104 39.130 0.00 0.00 0.00 2.52
766 790 8.390354 GTTTTGAATTTTTCCAAGGTGAAGAAG 58.610 33.333 0.00 0.00 0.00 2.85
789 814 9.807649 GCTGTTCCTCAATTAATTATCATGTTT 57.192 29.630 0.00 0.00 0.00 2.83
817 842 7.397221 TGTTGTCAATACCTCTGATGAAATCT 58.603 34.615 0.00 0.00 45.81 2.40
818 843 7.615582 TGTTGTCAATACCTCTGATGAAATC 57.384 36.000 0.00 0.00 45.83 2.17
819 844 8.051535 AGATGTTGTCAATACCTCTGATGAAAT 58.948 33.333 0.00 0.00 0.00 2.17
820 845 7.397221 AGATGTTGTCAATACCTCTGATGAAA 58.603 34.615 0.00 0.00 0.00 2.69
821 846 6.950842 AGATGTTGTCAATACCTCTGATGAA 58.049 36.000 0.00 0.00 0.00 2.57
822 847 6.550938 AGATGTTGTCAATACCTCTGATGA 57.449 37.500 0.00 0.00 0.00 2.92
823 848 6.703607 GGTAGATGTTGTCAATACCTCTGATG 59.296 42.308 6.02 0.00 37.18 3.07
824 849 6.613271 AGGTAGATGTTGTCAATACCTCTGAT 59.387 38.462 9.06 0.00 41.92 2.90
825 850 5.958380 AGGTAGATGTTGTCAATACCTCTGA 59.042 40.000 9.06 0.00 41.92 3.27
826 851 6.227298 AGGTAGATGTTGTCAATACCTCTG 57.773 41.667 9.06 0.00 41.92 3.35
855 880 4.039245 GGAGTTGGACCTCATGATCGATAA 59.961 45.833 0.00 0.00 32.91 1.75
873 898 0.321653 GACGTTGGCATCTGGGAGTT 60.322 55.000 0.00 0.00 0.00 3.01
881 906 3.241067 TGTAAGTAGGACGTTGGCATC 57.759 47.619 0.00 0.00 0.00 3.91
887 912 4.099113 GGCTAGGAATGTAAGTAGGACGTT 59.901 45.833 0.00 0.00 0.00 3.99
894 919 7.770366 TCGATAATGGCTAGGAATGTAAGTA 57.230 36.000 0.00 0.00 0.00 2.24
895 920 6.665992 TCGATAATGGCTAGGAATGTAAGT 57.334 37.500 0.00 0.00 0.00 2.24
896 921 6.758886 GGATCGATAATGGCTAGGAATGTAAG 59.241 42.308 0.00 0.00 0.00 2.34
897 922 6.351881 GGGATCGATAATGGCTAGGAATGTAA 60.352 42.308 0.00 0.00 0.00 2.41
933 958 9.480861 TCGATAATGACTAGGAATGGAGATATT 57.519 33.333 0.00 0.00 0.00 1.28
934 959 8.908903 GTCGATAATGACTAGGAATGGAGATAT 58.091 37.037 0.00 0.00 35.95 1.63
935 960 7.339721 GGTCGATAATGACTAGGAATGGAGATA 59.660 40.741 0.00 0.00 38.91 1.98
936 961 6.153680 GGTCGATAATGACTAGGAATGGAGAT 59.846 42.308 0.00 0.00 38.91 2.75
937 962 5.477291 GGTCGATAATGACTAGGAATGGAGA 59.523 44.000 0.00 0.00 38.91 3.71
938 963 5.336849 GGGTCGATAATGACTAGGAATGGAG 60.337 48.000 0.00 0.00 38.91 3.86
939 964 4.527038 GGGTCGATAATGACTAGGAATGGA 59.473 45.833 0.00 0.00 38.91 3.41
940 965 4.322801 GGGGTCGATAATGACTAGGAATGG 60.323 50.000 0.00 0.00 38.91 3.16
941 966 4.322801 GGGGGTCGATAATGACTAGGAATG 60.323 50.000 0.00 0.00 38.91 2.67
942 967 3.838903 GGGGGTCGATAATGACTAGGAAT 59.161 47.826 0.00 0.00 38.91 3.01
943 968 3.116862 AGGGGGTCGATAATGACTAGGAA 60.117 47.826 0.00 0.00 38.91 3.36
944 969 2.449730 AGGGGGTCGATAATGACTAGGA 59.550 50.000 0.00 0.00 38.91 2.94
945 970 2.826725 GAGGGGGTCGATAATGACTAGG 59.173 54.545 0.00 0.00 38.91 3.02
946 971 2.826725 GGAGGGGGTCGATAATGACTAG 59.173 54.545 0.00 0.00 38.91 2.57
947 972 2.816712 CGGAGGGGGTCGATAATGACTA 60.817 54.545 0.00 0.00 38.91 2.59
948 973 1.718280 GGAGGGGGTCGATAATGACT 58.282 55.000 0.00 0.00 38.91 3.41
949 974 0.317479 CGGAGGGGGTCGATAATGAC 59.683 60.000 0.00 0.00 38.17 3.06
950 975 1.469335 GCGGAGGGGGTCGATAATGA 61.469 60.000 0.00 0.00 0.00 2.57
951 976 1.004918 GCGGAGGGGGTCGATAATG 60.005 63.158 0.00 0.00 0.00 1.90
952 977 2.214920 GGCGGAGGGGGTCGATAAT 61.215 63.158 0.00 0.00 0.00 1.28
953 978 2.841044 GGCGGAGGGGGTCGATAA 60.841 66.667 0.00 0.00 0.00 1.75
1038 1063 2.764128 ACGATGGCATCCGGGAGT 60.764 61.111 21.20 10.22 0.00 3.85
1044 1069 1.070445 CCAGAGGACGATGGCATCC 59.930 63.158 21.20 9.73 34.98 3.51
1049 1074 0.965439 GATCTCCCAGAGGACGATGG 59.035 60.000 0.00 0.00 37.19 3.51
1050 1075 1.993956 AGATCTCCCAGAGGACGATG 58.006 55.000 0.00 0.00 37.19 3.84
1089 1114 4.899239 CGGCAGCGGAGGATGGAC 62.899 72.222 0.00 0.00 0.00 4.02
1186 1211 3.791320 ACTTACAGTGGGAGAAGATGGA 58.209 45.455 0.00 0.00 0.00 3.41
1192 1217 3.446161 CCGATGTACTTACAGTGGGAGAA 59.554 47.826 0.00 0.00 39.92 2.87
1199 1233 1.469251 CGCTGCCGATGTACTTACAGT 60.469 52.381 0.00 0.00 39.92 3.55
1200 1234 1.200483 CGCTGCCGATGTACTTACAG 58.800 55.000 0.00 0.00 39.92 2.74
1201 1235 0.812549 TCGCTGCCGATGTACTTACA 59.187 50.000 0.00 0.00 38.82 2.41
1202 1236 1.197910 GTCGCTGCCGATGTACTTAC 58.802 55.000 0.00 0.00 46.38 2.34
1203 1237 0.812549 TGTCGCTGCCGATGTACTTA 59.187 50.000 0.00 0.00 46.38 2.24
1204 1238 0.458543 CTGTCGCTGCCGATGTACTT 60.459 55.000 0.00 0.00 46.38 2.24
1205 1239 1.139734 CTGTCGCTGCCGATGTACT 59.860 57.895 0.00 0.00 46.38 2.73
1206 1240 1.878522 CCTGTCGCTGCCGATGTAC 60.879 63.158 0.00 0.00 46.38 2.90
1207 1241 1.600511 TTCCTGTCGCTGCCGATGTA 61.601 55.000 0.00 0.00 46.38 2.29
1208 1242 2.842394 CTTCCTGTCGCTGCCGATGT 62.842 60.000 0.00 0.00 46.38 3.06
1209 1243 2.125552 TTCCTGTCGCTGCCGATG 60.126 61.111 0.00 0.00 46.38 3.84
1210 1244 2.185350 CTTCCTGTCGCTGCCGAT 59.815 61.111 0.00 0.00 46.38 4.18
1211 1245 4.742201 GCTTCCTGTCGCTGCCGA 62.742 66.667 0.00 0.00 42.01 5.54
1213 1247 2.669569 TTGCTTCCTGTCGCTGCC 60.670 61.111 0.00 0.00 0.00 4.85
1214 1248 1.669115 TCTTGCTTCCTGTCGCTGC 60.669 57.895 0.00 0.00 0.00 5.25
1215 1249 0.601046 TGTCTTGCTTCCTGTCGCTG 60.601 55.000 0.00 0.00 0.00 5.18
1216 1250 0.322975 ATGTCTTGCTTCCTGTCGCT 59.677 50.000 0.00 0.00 0.00 4.93
1225 1259 1.836802 GAGGAGGAGGATGTCTTGCTT 59.163 52.381 0.00 0.00 32.62 3.91
1227 1261 0.103937 CGAGGAGGAGGATGTCTTGC 59.896 60.000 0.00 0.00 0.00 4.01
1229 1263 1.686741 GGTCGAGGAGGAGGATGTCTT 60.687 57.143 0.00 0.00 0.00 3.01
1230 1273 0.106419 GGTCGAGGAGGAGGATGTCT 60.106 60.000 0.00 0.00 0.00 3.41
1231 1274 0.395862 TGGTCGAGGAGGAGGATGTC 60.396 60.000 0.00 0.00 0.00 3.06
1240 1283 3.775654 GGCCTGGTGGTCGAGGAG 61.776 72.222 0.00 0.00 41.22 3.69
1277 1332 0.906775 GTAGGGATGGTCAAACCGGA 59.093 55.000 9.46 0.00 42.58 5.14
1282 1337 2.041081 CCAGTTGGTAGGGATGGTCAAA 59.959 50.000 0.00 0.00 0.00 2.69
1290 1345 1.615424 GCCCTCCAGTTGGTAGGGA 60.615 63.158 26.62 3.37 46.67 4.20
1291 1346 1.616628 AGCCCTCCAGTTGGTAGGG 60.617 63.158 21.78 21.78 46.56 3.53
1295 1350 2.856000 AGCAGCCCTCCAGTTGGT 60.856 61.111 0.00 0.00 36.34 3.67
1297 1352 3.060615 GCAGCAGCCCTCCAGTTG 61.061 66.667 0.00 0.00 33.58 3.16
1298 1353 4.711949 CGCAGCAGCCCTCCAGTT 62.712 66.667 0.00 0.00 37.52 3.16
1319 1374 0.336737 GGTTGAGAGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
1335 1390 4.761975 CATTCAAAATGCTATGCCTGGTT 58.238 39.130 0.00 0.00 0.00 3.67
1337 1392 3.128349 GCATTCAAAATGCTATGCCTGG 58.872 45.455 15.53 0.00 41.52 4.45
1342 1397 4.534168 CGAGAGGCATTCAAAATGCTATG 58.466 43.478 20.44 6.58 44.02 2.23
1351 1406 2.819595 GGCGCGAGAGGCATTCAA 60.820 61.111 12.10 0.00 43.84 2.69
1369 1424 2.435059 GTTGCAGACGGAGAGGCC 60.435 66.667 0.00 0.00 0.00 5.19
1390 1445 4.760047 GGCCATCTCACGCGTGGT 62.760 66.667 36.41 21.05 35.44 4.16
1418 1485 4.318332 CAAGATGTTGAAGTCCAGCAGTA 58.682 43.478 0.00 0.00 39.36 2.74
1424 1491 2.061848 TCCCCAAGATGTTGAAGTCCA 58.938 47.619 3.74 0.00 35.46 4.02
1489 1556 2.182030 CGTCTCGTGCTTCCTCCC 59.818 66.667 0.00 0.00 0.00 4.30
1497 1564 3.461982 CACTGCGTCGTCTCGTGC 61.462 66.667 0.00 0.00 0.00 5.34
1498 1565 2.801162 CCACTGCGTCGTCTCGTG 60.801 66.667 0.00 0.00 0.00 4.35
1501 1568 2.126424 GTCCCACTGCGTCGTCTC 60.126 66.667 0.00 0.00 0.00 3.36
1503 1570 2.733593 GTGTCCCACTGCGTCGTC 60.734 66.667 0.00 0.00 0.00 4.20
1504 1571 3.533105 TGTGTCCCACTGCGTCGT 61.533 61.111 0.00 0.00 35.11 4.34
1505 1572 3.036084 GTGTGTCCCACTGCGTCG 61.036 66.667 0.00 0.00 41.11 5.12
1506 1573 1.812686 TAGGTGTGTCCCACTGCGTC 61.813 60.000 0.00 0.00 43.94 5.19
1507 1574 1.816863 CTAGGTGTGTCCCACTGCGT 61.817 60.000 0.00 0.00 43.94 5.24
1508 1575 1.079819 CTAGGTGTGTCCCACTGCG 60.080 63.158 0.00 0.00 43.94 5.18
1509 1576 1.376037 GCTAGGTGTGTCCCACTGC 60.376 63.158 0.00 0.00 43.94 4.40
1510 1577 1.079819 CGCTAGGTGTGTCCCACTG 60.080 63.158 0.00 0.00 43.94 3.66
1511 1578 1.228769 TCGCTAGGTGTGTCCCACT 60.229 57.895 0.00 0.00 43.94 4.00
1512 1579 1.080025 GTCGCTAGGTGTGTCCCAC 60.080 63.158 0.00 0.00 43.74 4.61
1513 1580 2.280552 GGTCGCTAGGTGTGTCCCA 61.281 63.158 0.00 0.00 36.75 4.37
1514 1581 2.577593 GGTCGCTAGGTGTGTCCC 59.422 66.667 0.00 0.00 36.75 4.46
1519 1586 1.585006 CAGTTCGGTCGCTAGGTGT 59.415 57.895 0.00 0.00 0.00 4.16
1521 1588 3.003113 GCCAGTTCGGTCGCTAGGT 62.003 63.158 0.00 0.00 36.97 3.08
1532 1622 2.680339 GCAAGGACATAGAAGCCAGTTC 59.320 50.000 0.00 0.00 35.08 3.01
1590 1683 2.343163 CTAGCTTGGTCTCGGAGCCG 62.343 65.000 1.74 1.74 37.11 5.52
1591 1684 1.324005 ACTAGCTTGGTCTCGGAGCC 61.324 60.000 0.00 5.87 37.11 4.70
1592 1685 0.179124 CACTAGCTTGGTCTCGGAGC 60.179 60.000 0.00 0.00 36.68 4.70
1605 1698 0.924090 CAAAGATCGCCGACACTAGC 59.076 55.000 0.00 0.00 0.00 3.42
1606 1699 2.561733 TCAAAGATCGCCGACACTAG 57.438 50.000 0.00 0.00 0.00 2.57
1610 1703 1.019278 GGCTTCAAAGATCGCCGACA 61.019 55.000 0.00 0.00 32.22 4.35
1618 1711 1.628846 AGGTACACCGGCTTCAAAGAT 59.371 47.619 0.00 0.00 42.08 2.40
1623 1716 1.669440 GACAGGTACACCGGCTTCA 59.331 57.895 0.00 0.00 42.08 3.02
1626 1719 3.379445 CGGACAGGTACACCGGCT 61.379 66.667 0.00 0.00 42.48 5.52
1630 1723 2.264794 CAGCCGGACAGGTACACC 59.735 66.667 5.05 0.00 43.70 4.16
1631 1724 2.434359 GCAGCCGGACAGGTACAC 60.434 66.667 5.05 0.00 43.70 2.90
1654 1747 2.920384 TCGGTACCAGTGCAGGCA 60.920 61.111 13.54 0.00 0.00 4.75
1670 1763 3.485216 CGATGGGTTGCGATAAAACACTC 60.485 47.826 0.00 0.00 31.96 3.51
1691 1802 0.741915 GCTTCTAGTGTCCTCCTCCG 59.258 60.000 0.00 0.00 0.00 4.63
1698 1809 3.127425 ACCAGTTTGCTTCTAGTGTCC 57.873 47.619 0.00 0.00 0.00 4.02
1702 1813 7.603024 GTCAAATACTACCAGTTTGCTTCTAGT 59.397 37.037 0.00 0.00 33.90 2.57
1703 1814 7.602644 TGTCAAATACTACCAGTTTGCTTCTAG 59.397 37.037 0.00 0.00 33.90 2.43
2022 2182 5.574055 GCCATCAGTGTCAATGTAAAACATG 59.426 40.000 0.00 0.00 37.97 3.21
2125 2300 2.006772 CATAACCTTCGAGTGCCGC 58.993 57.895 0.00 0.00 38.37 6.53
2133 2308 3.009723 ACCATTCACAGCATAACCTTCG 58.990 45.455 0.00 0.00 0.00 3.79
2221 2396 2.102757 ACACTGCAGCTCATGAGGATAG 59.897 50.000 23.89 11.91 0.00 2.08
2269 2444 7.220683 AGTTCAACACAAAACGAAGAAATCATG 59.779 33.333 0.00 0.00 0.00 3.07
2270 2445 7.220683 CAGTTCAACACAAAACGAAGAAATCAT 59.779 33.333 0.00 0.00 0.00 2.45
2281 2456 7.985634 ATACATCAACAGTTCAACACAAAAC 57.014 32.000 0.00 0.00 0.00 2.43
2381 2563 1.467734 CAAGCAGCACTCACTTCATCC 59.532 52.381 0.00 0.00 0.00 3.51
2392 2574 0.313043 AGCATCAACACAAGCAGCAC 59.687 50.000 0.00 0.00 0.00 4.40
2497 2726 8.808092 AGAAAGAGGTACAAGGCATATATAGAC 58.192 37.037 0.00 0.00 0.00 2.59
2742 2994 8.844244 AGATGCATGGAGAAAACAGAATTATAC 58.156 33.333 2.46 0.00 0.00 1.47
2932 4377 0.036875 GGACCCAGCTGTTTAGTGCT 59.963 55.000 13.81 0.00 40.54 4.40
2938 4383 2.430367 GGACGGACCCAGCTGTTT 59.570 61.111 13.81 0.00 0.00 2.83
2985 4443 1.571460 CTGTGCTGCTTCACGGAAC 59.429 57.895 10.86 0.00 44.09 3.62
2988 4446 2.962827 CTGCTGTGCTGCTTCACGG 61.963 63.158 11.70 11.70 44.16 4.94
2993 4451 0.386838 GGAAAACTGCTGTGCTGCTT 59.613 50.000 0.00 0.00 0.00 3.91
2996 4454 0.040958 GTCGGAAAACTGCTGTGCTG 60.041 55.000 0.00 0.00 0.00 4.41
2997 4455 0.463654 TGTCGGAAAACTGCTGTGCT 60.464 50.000 0.00 0.00 0.00 4.40
2999 4457 1.400142 TGTTGTCGGAAAACTGCTGTG 59.600 47.619 12.07 0.00 0.00 3.66
3002 4460 2.038387 ACTGTTGTCGGAAAACTGCT 57.962 45.000 15.43 3.53 31.71 4.24
3003 4461 2.354821 AGAACTGTTGTCGGAAAACTGC 59.645 45.455 15.43 3.53 31.71 4.40
3014 4472 1.299541 CCAGCGACAAGAACTGTTGT 58.700 50.000 0.00 0.00 43.49 3.32
3015 4473 0.040958 GCCAGCGACAAGAACTGTTG 60.041 55.000 0.00 0.00 38.84 3.33
3016 4474 1.166531 GGCCAGCGACAAGAACTGTT 61.167 55.000 0.00 0.00 38.84 3.16
3017 4475 1.598130 GGCCAGCGACAAGAACTGT 60.598 57.895 0.00 0.00 42.61 3.55
3018 4476 2.671177 CGGCCAGCGACAAGAACTG 61.671 63.158 2.24 0.00 0.00 3.16
3019 4477 2.357517 CGGCCAGCGACAAGAACT 60.358 61.111 2.24 0.00 0.00 3.01
3020 4478 2.665185 ACGGCCAGCGACAAGAAC 60.665 61.111 2.24 0.00 0.00 3.01
3022 4480 4.373116 GGACGGCCAGCGACAAGA 62.373 66.667 0.00 0.00 0.00 3.02
3023 4481 3.883744 AAGGACGGCCAGCGACAAG 62.884 63.158 11.69 0.00 36.29 3.16
3027 4485 1.609635 TATGAAAGGACGGCCAGCGA 61.610 55.000 11.69 0.00 36.29 4.93
3028 4486 0.742990 TTATGAAAGGACGGCCAGCG 60.743 55.000 11.69 0.00 36.29 5.18
3030 4488 2.917933 TGATTATGAAAGGACGGCCAG 58.082 47.619 11.69 0.00 36.29 4.85
3031 4489 3.476552 GATGATTATGAAAGGACGGCCA 58.523 45.455 11.69 0.00 36.29 5.36
3032 4490 2.814336 GGATGATTATGAAAGGACGGCC 59.186 50.000 0.00 0.00 0.00 6.13
3033 4491 3.476552 TGGATGATTATGAAAGGACGGC 58.523 45.455 0.00 0.00 0.00 5.68
3045 5231 3.070734 GCTGGAGAGAAGCTGGATGATTA 59.929 47.826 0.00 0.00 37.69 1.75
3046 5232 2.158784 GCTGGAGAGAAGCTGGATGATT 60.159 50.000 0.00 0.00 37.69 2.57
3063 5249 3.214328 GGGACATTAATGGTGTAGCTGG 58.786 50.000 19.37 0.00 0.00 4.85
3082 5268 3.567164 GCATGGTCAGTTGAGAATATGGG 59.433 47.826 0.00 0.00 0.00 4.00
3086 5272 4.650734 TGTTGCATGGTCAGTTGAGAATA 58.349 39.130 0.00 0.00 0.00 1.75
3101 5287 4.475944 GCGACTTAGAACATTTGTTGCAT 58.524 39.130 0.00 0.00 38.56 3.96
3115 5301 5.968387 AACGAGATTTATTGGCGACTTAG 57.032 39.130 0.00 0.00 0.00 2.18
3119 5305 4.593597 TGAAACGAGATTTATTGGCGAC 57.406 40.909 0.00 0.00 0.00 5.19
3120 5306 4.693566 AGTTGAAACGAGATTTATTGGCGA 59.306 37.500 0.00 0.00 0.00 5.54
3121 5307 4.969816 AGTTGAAACGAGATTTATTGGCG 58.030 39.130 0.00 0.00 0.00 5.69
3122 5308 6.089417 CCAAAGTTGAAACGAGATTTATTGGC 59.911 38.462 0.00 0.00 0.00 4.52
3123 5309 6.586082 CCCAAAGTTGAAACGAGATTTATTGG 59.414 38.462 0.00 0.00 0.00 3.16
3125 5311 6.492087 TCCCCAAAGTTGAAACGAGATTTATT 59.508 34.615 0.00 0.00 0.00 1.40
3126 5312 6.007703 TCCCCAAAGTTGAAACGAGATTTAT 58.992 36.000 0.00 0.00 0.00 1.40
3127 5313 5.378332 TCCCCAAAGTTGAAACGAGATTTA 58.622 37.500 0.00 0.00 0.00 1.40
3133 5320 4.069304 CACTATCCCCAAAGTTGAAACGA 58.931 43.478 0.00 0.00 0.00 3.85
3134 5321 4.069304 TCACTATCCCCAAAGTTGAAACG 58.931 43.478 0.00 0.00 0.00 3.60
3139 5326 2.025887 AGGCTCACTATCCCCAAAGTTG 60.026 50.000 0.00 0.00 0.00 3.16
3140 5327 2.279173 AGGCTCACTATCCCCAAAGTT 58.721 47.619 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.