Multiple sequence alignment - TraesCS3D01G019900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G019900 chr3D 100.000 4473 0 0 1 4473 6726318 6730790 0.000000e+00 8261.0
1 TraesCS3D01G019900 chr3D 91.339 381 18 8 1399 1778 57606497 57606863 1.440000e-139 507.0
2 TraesCS3D01G019900 chr3D 85.859 297 20 10 4179 4473 47796446 47796722 3.380000e-76 296.0
3 TraesCS3D01G019900 chr3B 87.666 4597 282 135 1 4473 8129723 8134158 0.000000e+00 5084.0
4 TraesCS3D01G019900 chr3B 100.000 28 0 0 1158 1185 36492519 36492546 8.000000e-03 52.8
5 TraesCS3D01G019900 chr3A 88.174 4380 303 104 165 4473 13521471 13517236 0.000000e+00 5020.0
6 TraesCS3D01G019900 chr3A 82.734 278 30 8 979 1241 668027205 668026931 9.680000e-57 231.0
7 TraesCS3D01G019900 chr6D 91.358 405 21 8 1380 1781 46527982 46527589 3.940000e-150 542.0
8 TraesCS3D01G019900 chr4D 91.337 404 21 8 1381 1781 222630798 222630406 1.420000e-149 540.0
9 TraesCS3D01G019900 chr2D 91.250 400 23 6 1380 1778 397122984 397123372 6.590000e-148 534.0
10 TraesCS3D01G019900 chr5D 90.864 405 23 8 1380 1781 16496956 16496563 8.520000e-147 531.0
11 TraesCS3D01G019900 chr4A 91.406 384 20 7 1399 1781 433610674 433610303 8.580000e-142 514.0
12 TraesCS3D01G019900 chr7D 91.755 376 19 6 1404 1778 103531819 103532183 3.090000e-141 512.0
13 TraesCS3D01G019900 chr2B 90.601 383 24 7 1397 1778 539864917 539865288 8.640000e-137 497.0
14 TraesCS3D01G019900 chr6A 82.374 278 31 8 979 1241 577803254 577802980 4.500000e-55 226.0
15 TraesCS3D01G019900 chr6B 81.250 256 25 16 1 241 93823798 93824045 7.640000e-43 185.0
16 TraesCS3D01G019900 chr1A 81.643 207 19 13 1306 1503 2155135 2155331 2.150000e-33 154.0
17 TraesCS3D01G019900 chr5A 80.976 205 23 11 1306 1503 405466521 405466716 1.000000e-31 148.0
18 TraesCS3D01G019900 chr2A 81.159 207 20 13 1306 1503 716708755 716708559 1.000000e-31 148.0
19 TraesCS3D01G019900 chr1B 80.682 88 17 0 1158 1245 630060653 630060740 8.030000e-08 69.4
20 TraesCS3D01G019900 chr7B 78.261 92 14 5 1158 1246 253370891 253370979 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G019900 chr3D 6726318 6730790 4472 False 8261 8261 100.000 1 4473 1 chr3D.!!$F1 4472
1 TraesCS3D01G019900 chr3B 8129723 8134158 4435 False 5084 5084 87.666 1 4473 1 chr3B.!!$F1 4472
2 TraesCS3D01G019900 chr3A 13517236 13521471 4235 True 5020 5020 88.174 165 4473 1 chr3A.!!$R1 4308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.341609 CCCCTCTCTTCCTCCTCCTT 59.658 60.0 0.00 0.0 0.00 3.36 F
142 147 0.494095 AGGAAGGAGAAGACAGGGGT 59.506 55.0 0.00 0.0 0.00 4.95 F
1244 1323 0.881796 GGCAGCCTCAAGGTAACAAC 59.118 55.0 3.29 0.0 41.41 3.32 F
2292 2413 0.035739 AGTACGCCCACCGAAAATGT 59.964 50.0 0.00 0.0 41.02 2.71 F
2309 2430 0.673333 TGTATCCAGCGTTGGTGCAG 60.673 55.0 18.51 0.0 45.26 4.41 F
3242 3389 0.981183 TCCTGATAACAGTTGGCCGT 59.019 50.0 0.00 0.0 42.05 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2131 1.399440 ACGCATTGTGTGATGATGAGC 59.601 47.619 1.23 0.0 0.00 4.26 R
2131 2248 2.365582 TGACACGAGAGGAATCATCGA 58.634 47.619 8.37 0.0 39.66 3.59 R
2959 3092 0.604511 TGCTGGTGCTGTGTGATCTG 60.605 55.000 0.00 0.0 40.48 2.90 R
3391 3538 1.064314 TCTTCTTCCTCCTCCTCCTCG 60.064 57.143 0.00 0.0 0.00 4.63 R
3399 3546 1.274069 TGGCATCCTCTTCTTCCTCCT 60.274 52.381 0.00 0.0 0.00 3.69 R
4347 4517 3.008923 TGGTCAGTACTTCCATTGCATCA 59.991 43.478 11.27 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.239036 GGTGATACACTGACAGATGCATACTA 60.239 42.308 10.08 0.00 34.40 1.82
41 42 6.638873 GTGATACACTGACAGATGCATACTAC 59.361 42.308 10.08 0.00 0.00 2.73
44 45 6.775594 ACACTGACAGATGCATACTACTTA 57.224 37.500 10.08 0.00 0.00 2.24
45 46 7.353414 ACACTGACAGATGCATACTACTTAT 57.647 36.000 10.08 0.00 0.00 1.73
46 47 7.786030 ACACTGACAGATGCATACTACTTATT 58.214 34.615 10.08 0.00 0.00 1.40
47 48 7.923344 ACACTGACAGATGCATACTACTTATTC 59.077 37.037 10.08 0.00 0.00 1.75
55 56 5.716979 TGCATACTACTTATTCCCCTCTCT 58.283 41.667 0.00 0.00 0.00 3.10
66 67 0.341609 CCCCTCTCTTCCTCCTCCTT 59.658 60.000 0.00 0.00 0.00 3.36
67 68 1.494960 CCCTCTCTTCCTCCTCCTTG 58.505 60.000 0.00 0.00 0.00 3.61
69 70 0.829990 CTCTCTTCCTCCTCCTTGCC 59.170 60.000 0.00 0.00 0.00 4.52
70 71 0.618968 TCTCTTCCTCCTCCTTGCCC 60.619 60.000 0.00 0.00 0.00 5.36
71 72 0.620121 CTCTTCCTCCTCCTTGCCCT 60.620 60.000 0.00 0.00 0.00 5.19
72 73 0.911525 TCTTCCTCCTCCTTGCCCTG 60.912 60.000 0.00 0.00 0.00 4.45
73 74 2.549169 CTTCCTCCTCCTTGCCCTGC 62.549 65.000 0.00 0.00 0.00 4.85
74 75 3.013932 CCTCCTCCTTGCCCTGCT 61.014 66.667 0.00 0.00 0.00 4.24
75 76 2.610519 CCTCCTCCTTGCCCTGCTT 61.611 63.158 0.00 0.00 0.00 3.91
76 77 1.378250 CTCCTCCTTGCCCTGCTTG 60.378 63.158 0.00 0.00 0.00 4.01
77 78 2.362120 CCTCCTTGCCCTGCTTGG 60.362 66.667 0.00 0.00 0.00 3.61
108 109 7.638192 GCCTCTCTTCTAATTTAAATCCCAGGA 60.638 40.741 0.10 0.00 0.00 3.86
131 136 2.556766 AGGAAGGAAGGAAGGAAGGAG 58.443 52.381 0.00 0.00 0.00 3.69
135 140 3.569135 AGGAAGGAAGGAAGGAGAAGA 57.431 47.619 0.00 0.00 0.00 2.87
136 141 3.178046 AGGAAGGAAGGAAGGAGAAGAC 58.822 50.000 0.00 0.00 0.00 3.01
137 142 2.907042 GGAAGGAAGGAAGGAGAAGACA 59.093 50.000 0.00 0.00 0.00 3.41
139 144 2.545810 AGGAAGGAAGGAGAAGACAGG 58.454 52.381 0.00 0.00 0.00 4.00
142 147 0.494095 AGGAAGGAGAAGACAGGGGT 59.506 55.000 0.00 0.00 0.00 4.95
143 148 1.132365 AGGAAGGAGAAGACAGGGGTT 60.132 52.381 0.00 0.00 0.00 4.11
146 151 2.715763 AGGAGAAGACAGGGGTTGTA 57.284 50.000 0.00 0.00 41.05 2.41
158 182 3.701040 CAGGGGTTGTATTTCTCCATTGG 59.299 47.826 0.00 0.00 0.00 3.16
160 184 3.031013 GGGTTGTATTTCTCCATTGGGG 58.969 50.000 2.09 0.00 38.37 4.96
161 185 2.430694 GGTTGTATTTCTCCATTGGGGC 59.569 50.000 2.09 0.00 36.21 5.80
162 186 2.051334 TGTATTTCTCCATTGGGGCG 57.949 50.000 2.09 0.00 36.21 6.13
163 187 1.283613 TGTATTTCTCCATTGGGGCGT 59.716 47.619 2.09 0.00 36.21 5.68
246 278 1.696674 CCTTAACCCCTCCCCCTCC 60.697 68.421 0.00 0.00 0.00 4.30
358 408 5.009610 GCAAGGTAAACATTTCTTCCACTGA 59.990 40.000 0.00 0.00 0.00 3.41
390 446 1.471684 GGGTTCTGCTGCTCATTTCTG 59.528 52.381 0.00 0.00 0.00 3.02
440 496 1.494960 ACCTCAGAGGCCTCTTCATC 58.505 55.000 33.33 5.83 39.63 2.92
450 506 3.011032 AGGCCTCTTCATCCATTCAGTTT 59.989 43.478 0.00 0.00 0.00 2.66
531 598 3.942115 TCTCGATTCATTGTCTCTCGTCT 59.058 43.478 0.00 0.00 0.00 4.18
571 638 6.858478 GTGTATTCTTTTCTGCTCCAAAGAAC 59.142 38.462 15.34 8.67 46.62 3.01
576 643 6.970484 TCTTTTCTGCTCCAAAGAACAATAC 58.030 36.000 3.24 0.00 36.33 1.89
626 693 4.281264 TGATGCGATGAATGTTTTATGCG 58.719 39.130 0.00 0.00 0.00 4.73
653 720 2.081212 CGACACGACACTCGCCTTC 61.081 63.158 0.00 0.00 45.12 3.46
664 731 3.975246 CGCCTTCCCTTGCGTTTA 58.025 55.556 0.00 0.00 45.43 2.01
682 749 4.551410 CGTTTACCGTCCAAAAGTTCAGAC 60.551 45.833 0.00 0.00 0.00 3.51
748 815 2.494471 TGATTCCAGCTGCTTCCAATTG 59.506 45.455 8.66 0.00 0.00 2.32
874 953 5.235186 CCTGACAGAATAAATACCAGAAGCG 59.765 44.000 3.32 0.00 0.00 4.68
902 981 1.603802 CATATTCGCGTTGCATTCCCT 59.396 47.619 5.77 0.00 0.00 4.20
906 985 2.125952 GCGTTGCATTCCCTTGCC 60.126 61.111 0.00 0.00 42.06 4.52
935 1014 3.114616 CAACTGCGTGCCCGAGAG 61.115 66.667 0.00 0.00 35.63 3.20
975 1054 3.019564 GCCATGGATGATTATACCTGCC 58.980 50.000 18.40 0.00 0.00 4.85
1133 1212 1.873270 TACTGCTGTGACATCGCCGT 61.873 55.000 6.48 0.28 0.00 5.68
1195 1274 2.055042 CAGGAGGAGGACTGGGACG 61.055 68.421 0.00 0.00 0.00 4.79
1244 1323 0.881796 GGCAGCCTCAAGGTAACAAC 59.118 55.000 3.29 0.00 41.41 3.32
1245 1324 1.604604 GCAGCCTCAAGGTAACAACA 58.395 50.000 0.00 0.00 41.41 3.33
1246 1325 1.953686 GCAGCCTCAAGGTAACAACAA 59.046 47.619 0.00 0.00 41.41 2.83
1253 1332 5.339990 CCTCAAGGTAACAACAAAACACAG 58.660 41.667 0.00 0.00 41.41 3.66
1256 1335 4.370364 AGGTAACAACAAAACACAGCAG 57.630 40.909 0.00 0.00 41.41 4.24
1361 1441 3.930634 AGGATTCAGAAAAAGCTGCAC 57.069 42.857 1.02 0.00 35.86 4.57
1395 1475 6.722590 TGATATGGGATGGGAAATTTGATCTG 59.277 38.462 0.00 0.00 0.00 2.90
1398 1478 5.092968 TGGGATGGGAAATTTGATCTGTTT 58.907 37.500 0.00 0.00 0.00 2.83
1406 1486 8.293867 TGGGAAATTTGATCTGTTTTTAGTACG 58.706 33.333 0.00 0.00 0.00 3.67
1407 1487 8.508875 GGGAAATTTGATCTGTTTTTAGTACGA 58.491 33.333 0.00 0.00 0.00 3.43
1408 1488 9.543018 GGAAATTTGATCTGTTTTTAGTACGAG 57.457 33.333 0.00 0.00 0.00 4.18
1412 1492 7.827819 TTGATCTGTTTTTAGTACGAGATGG 57.172 36.000 0.00 0.00 0.00 3.51
1413 1493 7.165460 TGATCTGTTTTTAGTACGAGATGGA 57.835 36.000 0.00 0.00 0.00 3.41
1414 1494 7.258441 TGATCTGTTTTTAGTACGAGATGGAG 58.742 38.462 0.00 0.00 0.00 3.86
1415 1495 6.585695 TCTGTTTTTAGTACGAGATGGAGT 57.414 37.500 0.00 0.00 0.00 3.85
1416 1496 7.692460 TCTGTTTTTAGTACGAGATGGAGTA 57.308 36.000 0.00 0.00 0.00 2.59
1417 1497 7.759465 TCTGTTTTTAGTACGAGATGGAGTAG 58.241 38.462 0.00 0.00 0.00 2.57
1418 1498 6.327934 TGTTTTTAGTACGAGATGGAGTAGC 58.672 40.000 0.00 0.00 0.00 3.58
1419 1499 5.511234 TTTTAGTACGAGATGGAGTAGCC 57.489 43.478 0.00 0.00 37.10 3.93
1476 1563 7.980099 CCTAGTTTGGTTTCCAGTAGTACTATG 59.020 40.741 5.75 5.74 33.81 2.23
1511 1598 2.627699 GGTTTGACTTGCCATGAGGAAA 59.372 45.455 0.00 0.00 36.89 3.13
1512 1599 3.069443 GGTTTGACTTGCCATGAGGAAAA 59.931 43.478 0.00 0.00 36.89 2.29
1513 1600 4.442753 GGTTTGACTTGCCATGAGGAAAAA 60.443 41.667 0.00 0.00 36.89 1.94
1552 1639 3.270877 GGGTTAGATGCAGTAGGTTGTG 58.729 50.000 0.00 0.00 0.00 3.33
1554 1641 4.324267 GGTTAGATGCAGTAGGTTGTGTT 58.676 43.478 0.00 0.00 0.00 3.32
1623 1710 4.037446 TCAACCTTGTTTGCCTCAATGTAC 59.963 41.667 0.00 0.00 0.00 2.90
1624 1711 3.561143 ACCTTGTTTGCCTCAATGTACA 58.439 40.909 0.00 0.00 0.00 2.90
1625 1712 3.569701 ACCTTGTTTGCCTCAATGTACAG 59.430 43.478 0.33 0.00 0.00 2.74
1626 1713 3.569701 CCTTGTTTGCCTCAATGTACAGT 59.430 43.478 0.33 0.00 0.00 3.55
1627 1714 4.759693 CCTTGTTTGCCTCAATGTACAGTA 59.240 41.667 0.33 0.00 0.00 2.74
1736 1834 4.161189 TGGTTTTGACTTGCCATGAAGAAA 59.839 37.500 0.00 0.00 0.00 2.52
1852 1952 6.949352 ATGAAATCCACTATGTTTGCCTAG 57.051 37.500 0.00 0.00 0.00 3.02
1859 1959 6.346096 TCCACTATGTTTGCCTAGATTGTAC 58.654 40.000 0.00 0.00 0.00 2.90
1860 1960 6.156256 TCCACTATGTTTGCCTAGATTGTACT 59.844 38.462 0.00 0.00 0.00 2.73
1861 1961 7.343574 TCCACTATGTTTGCCTAGATTGTACTA 59.656 37.037 0.00 0.00 0.00 1.82
1884 1984 4.660771 AGCTTGGAAGGTAGTAATGCCTAT 59.339 41.667 0.00 0.00 34.49 2.57
1886 1986 5.470437 GCTTGGAAGGTAGTAATGCCTATTC 59.530 44.000 0.00 0.00 34.15 1.75
1928 2028 7.542477 GGACTGTGACATGTATATATAGTGTGC 59.458 40.741 12.94 8.07 0.00 4.57
1929 2029 7.951591 ACTGTGACATGTATATATAGTGTGCA 58.048 34.615 12.94 10.86 0.00 4.57
1930 2030 8.421002 ACTGTGACATGTATATATAGTGTGCAA 58.579 33.333 12.94 0.81 0.00 4.08
1931 2031 8.587952 TGTGACATGTATATATAGTGTGCAAC 57.412 34.615 12.94 9.79 37.35 4.17
1999 2104 3.994931 AGTAGGCGTTTTGTATTCCCT 57.005 42.857 0.00 0.00 0.00 4.20
2014 2119 2.200373 TCCCTAAGTTGGAAGCAAGC 57.800 50.000 0.00 0.00 0.00 4.01
2120 2236 8.245195 ACTTTTAAGAAACATTCTGGCCTTTA 57.755 30.769 3.32 0.00 40.59 1.85
2131 2248 4.178956 TCTGGCCTTTAGTCCTTTTTGT 57.821 40.909 3.32 0.00 0.00 2.83
2132 2249 4.142038 TCTGGCCTTTAGTCCTTTTTGTC 58.858 43.478 3.32 0.00 0.00 3.18
2136 2253 4.379499 GGCCTTTAGTCCTTTTTGTCGATG 60.379 45.833 0.00 0.00 0.00 3.84
2137 2254 4.454504 GCCTTTAGTCCTTTTTGTCGATGA 59.545 41.667 0.00 0.00 0.00 2.92
2138 2255 5.123979 GCCTTTAGTCCTTTTTGTCGATGAT 59.876 40.000 0.00 0.00 0.00 2.45
2139 2256 6.349363 GCCTTTAGTCCTTTTTGTCGATGATT 60.349 38.462 0.00 0.00 0.00 2.57
2140 2257 7.244192 CCTTTAGTCCTTTTTGTCGATGATTC 58.756 38.462 0.00 0.00 0.00 2.52
2141 2258 6.737254 TTAGTCCTTTTTGTCGATGATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2142 2259 4.911390 AGTCCTTTTTGTCGATGATTCCT 58.089 39.130 0.00 0.00 0.00 3.36
2143 2260 4.938226 AGTCCTTTTTGTCGATGATTCCTC 59.062 41.667 0.00 0.00 0.00 3.71
2144 2261 4.938226 GTCCTTTTTGTCGATGATTCCTCT 59.062 41.667 0.00 0.00 0.00 3.69
2145 2262 5.064071 GTCCTTTTTGTCGATGATTCCTCTC 59.936 44.000 0.00 0.00 0.00 3.20
2146 2263 4.033358 CCTTTTTGTCGATGATTCCTCTCG 59.967 45.833 0.00 0.00 0.00 4.04
2147 2264 3.868757 TTTGTCGATGATTCCTCTCGT 57.131 42.857 0.00 0.00 34.19 4.18
2148 2265 2.851805 TGTCGATGATTCCTCTCGTG 57.148 50.000 0.00 0.00 34.19 4.35
2149 2266 2.092323 TGTCGATGATTCCTCTCGTGT 58.908 47.619 0.00 0.00 34.19 4.49
2150 2267 2.097629 TGTCGATGATTCCTCTCGTGTC 59.902 50.000 0.00 0.00 34.19 3.67
2151 2268 2.097629 GTCGATGATTCCTCTCGTGTCA 59.902 50.000 0.00 0.00 34.19 3.58
2152 2269 2.752903 TCGATGATTCCTCTCGTGTCAA 59.247 45.455 0.00 0.00 34.19 3.18
2153 2270 3.192633 TCGATGATTCCTCTCGTGTCAAA 59.807 43.478 0.00 0.00 34.19 2.69
2154 2271 4.115516 CGATGATTCCTCTCGTGTCAAAT 58.884 43.478 0.00 0.00 0.00 2.32
2155 2272 4.026228 CGATGATTCCTCTCGTGTCAAATG 60.026 45.833 0.00 0.00 0.00 2.32
2156 2273 4.535526 TGATTCCTCTCGTGTCAAATGA 57.464 40.909 0.00 0.00 0.00 2.57
2157 2274 5.089970 TGATTCCTCTCGTGTCAAATGAT 57.910 39.130 0.00 0.00 0.00 2.45
2158 2275 5.111989 TGATTCCTCTCGTGTCAAATGATC 58.888 41.667 0.00 0.00 0.00 2.92
2159 2276 3.526931 TCCTCTCGTGTCAAATGATCC 57.473 47.619 0.00 0.00 0.00 3.36
2160 2277 2.831526 TCCTCTCGTGTCAAATGATCCA 59.168 45.455 0.00 0.00 0.00 3.41
2161 2278 3.452264 TCCTCTCGTGTCAAATGATCCAT 59.548 43.478 0.00 0.00 0.00 3.41
2205 2322 3.548268 GCTTGGAATCGACTAAGAAGACG 59.452 47.826 3.71 0.00 41.36 4.18
2207 2324 2.110226 GGAATCGACTAAGAAGACGCG 58.890 52.381 3.53 3.53 40.10 6.01
2237 2354 3.430651 GGTCGATTACACCGGTGGATTAA 60.431 47.826 36.47 25.45 34.19 1.40
2241 2358 6.479660 GTCGATTACACCGGTGGATTAAATAA 59.520 38.462 36.47 23.42 34.19 1.40
2242 2359 7.011295 GTCGATTACACCGGTGGATTAAATAAA 59.989 37.037 36.47 12.97 34.19 1.40
2244 2361 7.641020 CGATTACACCGGTGGATTAAATAAAAC 59.359 37.037 36.47 19.11 34.19 2.43
2292 2413 0.035739 AGTACGCCCACCGAAAATGT 59.964 50.000 0.00 0.00 41.02 2.71
2309 2430 0.673333 TGTATCCAGCGTTGGTGCAG 60.673 55.000 18.51 0.00 45.26 4.41
2331 2452 3.222354 GAAGGGCGACACCGTCTGT 62.222 63.158 0.00 0.00 40.82 3.41
2354 2475 6.644592 TGTGAAATATGCTTGCAGGTAAAAAC 59.355 34.615 0.87 0.00 0.00 2.43
2356 2477 7.170658 GTGAAATATGCTTGCAGGTAAAAACAA 59.829 33.333 0.87 0.00 0.00 2.83
2384 2505 5.760253 ACAAAATTGCCTATCTACCTGATCG 59.240 40.000 0.00 0.00 36.65 3.69
2389 2510 4.918588 TGCCTATCTACCTGATCGATGTA 58.081 43.478 0.54 0.00 36.65 2.29
2390 2511 4.700692 TGCCTATCTACCTGATCGATGTAC 59.299 45.833 0.54 0.00 36.65 2.90
2391 2512 4.096682 GCCTATCTACCTGATCGATGTACC 59.903 50.000 0.54 0.00 36.65 3.34
2392 2513 4.333095 CCTATCTACCTGATCGATGTACCG 59.667 50.000 0.54 0.00 36.65 4.02
2393 2514 1.878088 TCTACCTGATCGATGTACCGC 59.122 52.381 0.54 0.00 0.00 5.68
2395 2516 1.977056 ACCTGATCGATGTACCGCTA 58.023 50.000 0.54 0.00 0.00 4.26
2396 2517 2.515854 ACCTGATCGATGTACCGCTAT 58.484 47.619 0.54 0.00 0.00 2.97
2405 2527 6.243811 TCGATGTACCGCTATTTTTGTTTT 57.756 33.333 0.00 0.00 0.00 2.43
2406 2528 6.081049 TCGATGTACCGCTATTTTTGTTTTG 58.919 36.000 0.00 0.00 0.00 2.44
2409 2531 6.814076 TGTACCGCTATTTTTGTTTTGTTG 57.186 33.333 0.00 0.00 0.00 3.33
2438 2560 1.247567 ACAGGCAAACATGTGTAGCC 58.752 50.000 22.20 22.20 44.67 3.93
2451 2573 6.810911 ACATGTGTAGCCTTAGTCTTATGAG 58.189 40.000 0.00 0.00 0.00 2.90
2462 2584 7.416890 GCCTTAGTCTTATGAGCTCTCTGTTTA 60.417 40.741 16.19 0.00 0.00 2.01
2487 2609 1.386533 CAATTCAGGCCAGGCTACAG 58.613 55.000 12.43 0.00 0.00 2.74
2491 2613 2.930019 AGGCCAGGCTACAGTGCA 60.930 61.111 12.43 0.00 34.04 4.57
2550 2672 1.891150 CTTCAGGCAGGCAGTCATTTT 59.109 47.619 0.00 0.00 0.00 1.82
2551 2673 1.250328 TCAGGCAGGCAGTCATTTTG 58.750 50.000 0.00 0.00 0.00 2.44
2580 2702 1.559368 TCCTGATGCAAAACCATGGG 58.441 50.000 18.09 0.00 0.00 4.00
2584 2706 2.502538 CTGATGCAAAACCATGGGGATT 59.497 45.455 18.09 5.24 38.05 3.01
2605 2729 7.041303 GGGATTTCTCTTTGTAAAACGTCTCTT 60.041 37.037 0.00 0.00 0.00 2.85
2718 2842 2.413112 CGAGTACGACGACTACTTTCCA 59.587 50.000 0.00 0.00 42.66 3.53
2775 2899 1.061131 GTCGCCATCATTGTGAGTTCG 59.939 52.381 0.00 0.00 0.00 3.95
2791 2923 2.093973 AGTTCGTCAGAATAGGCTGTGG 60.094 50.000 0.00 0.00 38.80 4.17
2832 2964 7.294473 GCTTTCTAATTAACAGCTAGCTATGC 58.706 38.462 18.86 7.84 0.00 3.14
2937 3069 6.483974 TCGTTTGCTCTGTTTTTGGTAAGATA 59.516 34.615 0.00 0.00 0.00 1.98
2939 3071 7.271223 CGTTTGCTCTGTTTTTGGTAAGATATG 59.729 37.037 0.00 0.00 0.00 1.78
2942 3074 6.939730 TGCTCTGTTTTTGGTAAGATATGTGA 59.060 34.615 0.00 0.00 0.00 3.58
2943 3075 7.119699 TGCTCTGTTTTTGGTAAGATATGTGAG 59.880 37.037 0.00 0.00 0.00 3.51
2944 3076 7.377766 TCTGTTTTTGGTAAGATATGTGAGC 57.622 36.000 0.00 0.00 0.00 4.26
2970 3103 2.981898 TGCCTTGATCAGATCACACAG 58.018 47.619 13.01 7.98 39.39 3.66
2980 3113 1.171308 GATCACACAGCACCAGCATT 58.829 50.000 0.00 0.00 45.49 3.56
2984 3117 1.338973 CACACAGCACCAGCATTTTCT 59.661 47.619 0.00 0.00 45.49 2.52
2985 3118 2.034124 ACACAGCACCAGCATTTTCTT 58.966 42.857 0.00 0.00 45.49 2.52
2986 3119 2.035066 ACACAGCACCAGCATTTTCTTC 59.965 45.455 0.00 0.00 45.49 2.87
2987 3120 2.034939 CACAGCACCAGCATTTTCTTCA 59.965 45.455 0.00 0.00 45.49 3.02
2988 3121 2.295349 ACAGCACCAGCATTTTCTTCAG 59.705 45.455 0.00 0.00 45.49 3.02
2989 3122 2.295349 CAGCACCAGCATTTTCTTCAGT 59.705 45.455 0.00 0.00 45.49 3.41
2990 3123 2.295349 AGCACCAGCATTTTCTTCAGTG 59.705 45.455 0.00 0.00 45.49 3.66
2991 3124 2.294233 GCACCAGCATTTTCTTCAGTGA 59.706 45.455 0.00 0.00 41.58 3.41
2992 3125 3.243501 GCACCAGCATTTTCTTCAGTGAA 60.244 43.478 5.25 5.25 41.58 3.18
3012 3155 7.384115 CAGTGAATTTGATCTTGTTCTTGCATT 59.616 33.333 0.00 0.00 0.00 3.56
3013 3156 7.597743 AGTGAATTTGATCTTGTTCTTGCATTC 59.402 33.333 0.00 0.00 0.00 2.67
3014 3157 7.383029 GTGAATTTGATCTTGTTCTTGCATTCA 59.617 33.333 0.00 0.00 0.00 2.57
3015 3158 7.927092 TGAATTTGATCTTGTTCTTGCATTCAA 59.073 29.630 0.00 0.00 0.00 2.69
3016 3159 8.842358 AATTTGATCTTGTTCTTGCATTCAAT 57.158 26.923 0.00 0.00 0.00 2.57
3017 3160 7.878477 TTTGATCTTGTTCTTGCATTCAATC 57.122 32.000 0.00 0.00 0.00 2.67
3018 3161 6.578163 TGATCTTGTTCTTGCATTCAATCA 57.422 33.333 0.00 0.00 0.00 2.57
3019 3162 6.983984 TGATCTTGTTCTTGCATTCAATCAA 58.016 32.000 0.00 0.00 0.00 2.57
3020 3163 7.608153 TGATCTTGTTCTTGCATTCAATCAAT 58.392 30.769 0.00 0.00 0.00 2.57
3021 3164 7.758076 TGATCTTGTTCTTGCATTCAATCAATC 59.242 33.333 0.00 0.00 0.00 2.67
3022 3165 6.983984 TCTTGTTCTTGCATTCAATCAATCA 58.016 32.000 0.00 0.00 0.00 2.57
3023 3166 7.435305 TCTTGTTCTTGCATTCAATCAATCAA 58.565 30.769 0.00 0.00 0.00 2.57
3024 3167 8.092068 TCTTGTTCTTGCATTCAATCAATCAAT 58.908 29.630 0.00 0.00 0.00 2.57
3025 3168 7.821595 TGTTCTTGCATTCAATCAATCAATC 57.178 32.000 0.00 0.00 0.00 2.67
3026 3169 7.379750 TGTTCTTGCATTCAATCAATCAATCA 58.620 30.769 0.00 0.00 0.00 2.57
3027 3170 7.873505 TGTTCTTGCATTCAATCAATCAATCAA 59.126 29.630 0.00 0.00 0.00 2.57
3028 3171 8.879759 GTTCTTGCATTCAATCAATCAATCAAT 58.120 29.630 0.00 0.00 0.00 2.57
3044 3190 8.591114 ATCAATCAATCCTCTGATCTTGTTTT 57.409 30.769 0.00 0.00 34.90 2.43
3045 3191 7.823665 TCAATCAATCCTCTGATCTTGTTTTG 58.176 34.615 0.00 0.00 34.90 2.44
3060 3206 6.595682 TCTTGTTTTGCATTTTTATGGGGAA 58.404 32.000 0.00 0.00 0.00 3.97
3061 3207 7.230027 TCTTGTTTTGCATTTTTATGGGGAAT 58.770 30.769 0.00 0.00 0.00 3.01
3150 3297 2.106683 GGCAACCTTCCATCGTCGG 61.107 63.158 0.00 0.00 0.00 4.79
3174 3321 1.692411 GCCAACAGGTAATCCCATCC 58.308 55.000 0.00 0.00 34.66 3.51
3236 3383 4.441634 GGCGTAGTGATCCTGATAACAGTT 60.442 45.833 0.00 0.00 42.05 3.16
3237 3384 4.504461 GCGTAGTGATCCTGATAACAGTTG 59.496 45.833 0.00 0.00 42.05 3.16
3239 3386 3.878778 AGTGATCCTGATAACAGTTGGC 58.121 45.455 0.00 0.00 42.05 4.52
3240 3387 2.945668 GTGATCCTGATAACAGTTGGCC 59.054 50.000 0.00 0.00 42.05 5.36
3241 3388 2.213499 GATCCTGATAACAGTTGGCCG 58.787 52.381 0.00 0.00 42.05 6.13
3242 3389 0.981183 TCCTGATAACAGTTGGCCGT 59.019 50.000 0.00 0.00 42.05 5.68
3334 3481 3.963374 TCTGGGGTCTAGATCACTTGATG 59.037 47.826 6.84 0.00 34.37 3.07
3391 3538 2.745492 ACCGAGGACGAGGACGAC 60.745 66.667 0.00 0.00 42.66 4.34
3392 3539 3.862402 CCGAGGACGAGGACGACG 61.862 72.222 0.00 0.00 42.66 5.12
3393 3540 2.812609 CGAGGACGAGGACGACGA 60.813 66.667 0.00 0.00 42.66 4.20
3394 3541 2.800581 CGAGGACGAGGACGACGAG 61.801 68.421 0.00 0.00 42.66 4.18
3395 3542 2.436292 AGGACGAGGACGACGAGG 60.436 66.667 0.00 0.00 42.66 4.63
3396 3543 2.435586 GGACGAGGACGACGAGGA 60.436 66.667 0.00 0.00 42.66 3.71
3397 3544 2.462782 GGACGAGGACGACGAGGAG 61.463 68.421 0.00 0.00 42.66 3.69
3398 3545 2.436292 ACGAGGACGACGAGGAGG 60.436 66.667 0.00 0.00 42.66 4.30
3399 3546 2.125229 CGAGGACGACGAGGAGGA 60.125 66.667 0.00 0.00 42.66 3.71
3419 3575 1.207791 GGAGGAAGAAGAGGATGCCA 58.792 55.000 0.00 0.00 0.00 4.92
3464 3620 1.301623 CAACCACGCCTTATCCCCA 59.698 57.895 0.00 0.00 0.00 4.96
3529 3685 4.077822 ACAGAAGCAAAGATCCCAAGAAG 58.922 43.478 0.00 0.00 0.00 2.85
3661 3817 4.237724 CGATGTAACTTGTGAGCTTCTCA 58.762 43.478 0.00 0.00 38.25 3.27
3662 3818 4.325741 CGATGTAACTTGTGAGCTTCTCAG 59.674 45.833 0.00 0.00 41.46 3.35
3677 3835 0.907486 CTCAGGCTCTCCCATGTTCA 59.093 55.000 0.00 0.00 35.39 3.18
3685 3843 4.141620 GGCTCTCCCATGTTCAAGAGATTA 60.142 45.833 12.47 0.00 37.97 1.75
3688 3846 4.782691 TCTCCCATGTTCAAGAGATTACCA 59.217 41.667 0.00 0.00 30.56 3.25
3706 3865 9.218440 AGATTACCAAAAATTACTTGCAAATGG 57.782 29.630 0.00 2.12 0.00 3.16
3708 3867 8.964476 TTACCAAAAATTACTTGCAAATGGAA 57.036 26.923 0.00 0.00 0.00 3.53
3710 3869 6.017192 ACCAAAAATTACTTGCAAATGGAAGC 60.017 34.615 13.69 0.00 45.75 3.86
3722 3881 4.142182 GCAAATGGAAGCAAGTATAAGCCA 60.142 41.667 0.00 0.00 0.00 4.75
3726 3885 4.766375 TGGAAGCAAGTATAAGCCAGTAC 58.234 43.478 0.00 0.00 0.00 2.73
3729 3888 5.429130 GAAGCAAGTATAAGCCAGTACCTT 58.571 41.667 0.00 0.00 0.00 3.50
3731 3890 6.749036 AGCAAGTATAAGCCAGTACCTTAT 57.251 37.500 7.67 7.67 38.60 1.73
3733 3892 6.555360 AGCAAGTATAAGCCAGTACCTTATCT 59.445 38.462 6.25 3.10 36.94 1.98
3735 3894 7.687103 GCAAGTATAAGCCAGTACCTTATCTGT 60.687 40.741 6.25 0.00 36.94 3.41
3738 3897 4.910458 AAGCCAGTACCTTATCTGTTGT 57.090 40.909 0.00 0.00 0.00 3.32
3740 3899 5.242795 AGCCAGTACCTTATCTGTTGTTT 57.757 39.130 0.00 0.00 0.00 2.83
3742 3901 4.395231 GCCAGTACCTTATCTGTTGTTTCC 59.605 45.833 0.00 0.00 0.00 3.13
3743 3902 5.556915 CCAGTACCTTATCTGTTGTTTCCA 58.443 41.667 0.00 0.00 0.00 3.53
3744 3903 5.643777 CCAGTACCTTATCTGTTGTTTCCAG 59.356 44.000 0.00 0.00 0.00 3.86
3745 3904 6.231211 CAGTACCTTATCTGTTGTTTCCAGT 58.769 40.000 0.00 0.00 0.00 4.00
3747 3906 7.545965 CAGTACCTTATCTGTTGTTTCCAGTAG 59.454 40.741 0.00 0.00 0.00 2.57
3748 3907 5.805728 ACCTTATCTGTTGTTTCCAGTAGG 58.194 41.667 0.00 0.00 33.93 3.18
3749 3908 5.186198 CCTTATCTGTTGTTTCCAGTAGGG 58.814 45.833 0.00 0.00 34.83 3.53
3750 3909 5.280521 CCTTATCTGTTGTTTCCAGTAGGGT 60.281 44.000 0.00 0.00 38.11 4.34
3751 3910 6.070424 CCTTATCTGTTGTTTCCAGTAGGGTA 60.070 42.308 0.00 0.00 38.11 3.69
3752 3911 7.365652 CCTTATCTGTTGTTTCCAGTAGGGTAT 60.366 40.741 0.00 0.00 38.11 2.73
3753 3912 5.836024 TCTGTTGTTTCCAGTAGGGTATT 57.164 39.130 0.00 0.00 38.11 1.89
3754 3913 6.195600 TCTGTTGTTTCCAGTAGGGTATTT 57.804 37.500 0.00 0.00 38.11 1.40
3755 3914 7.319052 TCTGTTGTTTCCAGTAGGGTATTTA 57.681 36.000 0.00 0.00 38.11 1.40
3756 3915 7.747690 TCTGTTGTTTCCAGTAGGGTATTTAA 58.252 34.615 0.00 0.00 38.11 1.52
3761 3920 7.691213 TGTTTCCAGTAGGGTATTTAACATGA 58.309 34.615 0.00 0.00 38.11 3.07
3920 4087 1.888512 CAGCCATAACAAAGCACCACT 59.111 47.619 0.00 0.00 0.00 4.00
3925 4092 4.579869 CCATAACAAAGCACCACTCTAGT 58.420 43.478 0.00 0.00 0.00 2.57
3953 4120 6.892310 AACGTATCCGACAAGGTAAATTAC 57.108 37.500 0.00 0.00 41.99 1.89
3993 4160 3.253220 TGTCCTGGGGTACATTGTTACT 58.747 45.455 0.00 0.00 0.00 2.24
3994 4161 3.262405 TGTCCTGGGGTACATTGTTACTC 59.738 47.826 0.00 0.00 0.00 2.59
3995 4162 3.262405 GTCCTGGGGTACATTGTTACTCA 59.738 47.826 0.00 0.00 0.00 3.41
3996 4163 3.262405 TCCTGGGGTACATTGTTACTCAC 59.738 47.826 0.00 0.00 0.00 3.51
3997 4164 3.008594 CCTGGGGTACATTGTTACTCACA 59.991 47.826 0.00 0.00 0.00 3.58
3998 4165 4.253685 CTGGGGTACATTGTTACTCACAG 58.746 47.826 0.00 0.00 36.48 3.66
4272 4442 4.653801 TGACCTACACATATGCACAGGTAT 59.346 41.667 17.96 2.59 36.46 2.73
4275 4445 5.221521 ACCTACACATATGCACAGGTATCAG 60.222 44.000 16.96 0.00 35.24 2.90
4276 4446 5.011023 CCTACACATATGCACAGGTATCAGA 59.989 44.000 1.58 0.00 0.00 3.27
4277 4447 4.953667 ACACATATGCACAGGTATCAGAG 58.046 43.478 1.58 0.00 0.00 3.35
4280 4450 4.842948 ACATATGCACAGGTATCAGAGGAT 59.157 41.667 1.58 0.00 37.55 3.24
4281 4451 6.019108 ACATATGCACAGGTATCAGAGGATA 58.981 40.000 1.58 0.00 34.89 2.59
4438 4610 4.631377 TCATTCTGAAATGCAGTAACGGAG 59.369 41.667 0.00 0.00 45.14 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.530744 TCAGTGTATCACCTCACCGC 59.469 55.000 0.00 0.00 34.49 5.68
9 10 1.544246 TGTCAGTGTATCACCTCACCG 59.456 52.381 0.00 0.00 34.49 4.94
40 41 3.276307 AGGAGGAAGAGAGGGGAATAAGT 59.724 47.826 0.00 0.00 0.00 2.24
41 42 3.901222 GAGGAGGAAGAGAGGGGAATAAG 59.099 52.174 0.00 0.00 0.00 1.73
44 45 1.061735 GGAGGAGGAAGAGAGGGGAAT 60.062 57.143 0.00 0.00 0.00 3.01
45 46 0.340208 GGAGGAGGAAGAGAGGGGAA 59.660 60.000 0.00 0.00 0.00 3.97
46 47 0.556380 AGGAGGAGGAAGAGAGGGGA 60.556 60.000 0.00 0.00 0.00 4.81
47 48 0.341609 AAGGAGGAGGAAGAGAGGGG 59.658 60.000 0.00 0.00 0.00 4.79
55 56 2.606587 GCAGGGCAAGGAGGAGGAA 61.607 63.158 0.00 0.00 0.00 3.36
77 78 5.796350 TTAAATTAGAAGAGAGGCAACGC 57.204 39.130 0.00 0.00 46.39 4.84
78 79 7.410485 GGATTTAAATTAGAAGAGAGGCAACG 58.590 38.462 1.43 0.00 46.39 4.10
108 109 2.916269 CCTTCCTTCCTTCCTTCCTTCT 59.084 50.000 0.00 0.00 0.00 2.85
131 136 4.262617 GGAGAAATACAACCCCTGTCTTC 58.737 47.826 0.00 0.00 39.64 2.87
135 140 4.344104 CAATGGAGAAATACAACCCCTGT 58.656 43.478 0.00 0.00 42.47 4.00
136 141 3.701040 CCAATGGAGAAATACAACCCCTG 59.299 47.826 0.00 0.00 0.00 4.45
137 142 3.309848 CCCAATGGAGAAATACAACCCCT 60.310 47.826 0.00 0.00 0.00 4.79
139 144 3.031013 CCCCAATGGAGAAATACAACCC 58.969 50.000 0.00 0.00 35.39 4.11
142 147 2.291282 ACGCCCCAATGGAGAAATACAA 60.291 45.455 0.00 0.00 37.37 2.41
143 148 1.283613 ACGCCCCAATGGAGAAATACA 59.716 47.619 0.00 0.00 37.37 2.29
146 151 1.824852 GAAACGCCCCAATGGAGAAAT 59.175 47.619 0.00 0.00 37.37 2.17
160 184 2.650778 CCAAGCCAAGGGAAACGC 59.349 61.111 0.00 0.00 0.00 4.84
161 185 2.650778 GCCAAGCCAAGGGAAACG 59.349 61.111 0.00 0.00 0.00 3.60
246 278 2.597903 GCTAAGGCAAGGGAGGGG 59.402 66.667 0.00 0.00 38.54 4.79
353 403 4.216257 AGAACCCAACGAAAATGATCAGTG 59.784 41.667 0.09 0.00 0.00 3.66
358 408 3.057315 CAGCAGAACCCAACGAAAATGAT 60.057 43.478 0.00 0.00 0.00 2.45
390 446 7.819900 GTGGTCTGACTGAATATGGGTTATATC 59.180 40.741 7.85 0.00 30.65 1.63
450 506 7.843760 AGAGAAGGGAGAAATCAAGAAGAGATA 59.156 37.037 0.00 0.00 0.00 1.98
531 598 3.636231 CACCACCGAGCAAGGGGA 61.636 66.667 0.85 0.00 36.61 4.81
604 671 4.201901 ACGCATAAAACATTCATCGCATCA 60.202 37.500 0.00 0.00 0.00 3.07
626 693 2.084101 TGTCGTGTCGCGTGCATAC 61.084 57.895 5.77 9.82 42.13 2.39
664 731 2.702592 TGTCTGAACTTTTGGACGGT 57.297 45.000 0.00 0.00 0.00 4.83
682 749 2.691927 GCCAAGAAGAGGCCAAAATTG 58.308 47.619 5.01 3.00 46.50 2.32
759 830 4.677182 ACTGGGAGTTTGATAAAGCCATT 58.323 39.130 0.00 0.00 0.00 3.16
760 831 4.322057 ACTGGGAGTTTGATAAAGCCAT 57.678 40.909 0.00 0.00 0.00 4.40
761 832 3.806949 ACTGGGAGTTTGATAAAGCCA 57.193 42.857 0.00 0.00 0.00 4.75
845 916 5.437060 TGGTATTTATTCTGTCAGGAAGCC 58.563 41.667 0.00 0.00 0.00 4.35
847 918 7.011857 GCTTCTGGTATTTATTCTGTCAGGAAG 59.988 40.741 0.00 1.98 0.00 3.46
874 953 0.098728 AACGCGAATATGCAACTGCC 59.901 50.000 15.93 0.00 41.18 4.85
925 1004 0.963355 ACTCTGTCTCTCTCGGGCAC 60.963 60.000 0.00 0.00 0.00 5.01
935 1014 0.171455 CGGCCTGTACACTCTGTCTC 59.829 60.000 0.00 0.00 0.00 3.36
975 1054 4.731503 GCAAGCACGCACGCAGAG 62.732 66.667 0.00 0.00 0.00 3.35
999 1078 2.100631 CGCGAGGTGTTCACCCATC 61.101 63.158 17.06 9.21 0.00 3.51
1063 1142 2.125350 CTGCTTCCTGCTCCCGAC 60.125 66.667 0.00 0.00 43.37 4.79
1108 1187 2.520979 GATGTCACAGCAGTAGACGAC 58.479 52.381 0.00 0.59 35.09 4.34
1253 1332 1.571460 CAGGCGTTCTGAACACTGC 59.429 57.895 21.47 15.98 46.18 4.40
1284 1363 4.572795 GCAAAATTCGACCAAAAGGGAAAA 59.427 37.500 0.00 0.00 41.15 2.29
1287 1367 2.695666 TGCAAAATTCGACCAAAAGGGA 59.304 40.909 0.00 0.00 41.15 4.20
1298 1378 8.211198 ACGAAGTTAAATTACTGCAAAATTCG 57.789 30.769 19.78 19.78 46.70 3.34
1342 1422 3.648339 TGTGCAGCTTTTTCTGAATCC 57.352 42.857 0.00 0.00 36.19 3.01
1343 1423 4.614946 ACTTGTGCAGCTTTTTCTGAATC 58.385 39.130 0.00 0.00 36.19 2.52
1345 1425 4.454728 AACTTGTGCAGCTTTTTCTGAA 57.545 36.364 0.00 0.00 36.19 3.02
1346 1426 4.454728 AAACTTGTGCAGCTTTTTCTGA 57.545 36.364 0.00 0.00 36.19 3.27
1347 1427 4.866486 AGAAAACTTGTGCAGCTTTTTCTG 59.134 37.500 15.72 0.00 37.15 3.02
1349 1429 4.864247 TCAGAAAACTTGTGCAGCTTTTTC 59.136 37.500 8.74 8.74 0.00 2.29
1350 1430 4.819769 TCAGAAAACTTGTGCAGCTTTTT 58.180 34.783 0.00 0.00 0.00 1.94
1361 1441 5.448654 TCCCATCCCATATCAGAAAACTTG 58.551 41.667 0.00 0.00 0.00 3.16
1395 1475 5.747675 GGCTACTCCATCTCGTACTAAAAAC 59.252 44.000 0.00 0.00 34.01 2.43
1398 1478 4.529897 TGGCTACTCCATCTCGTACTAAA 58.470 43.478 0.00 0.00 40.72 1.85
1405 1485 2.158900 ACCAATTGGCTACTCCATCTCG 60.159 50.000 24.79 0.00 46.04 4.04
1406 1486 3.209410 CACCAATTGGCTACTCCATCTC 58.791 50.000 24.79 0.00 46.04 2.75
1407 1487 2.578021 ACACCAATTGGCTACTCCATCT 59.422 45.455 24.79 0.00 46.04 2.90
1408 1488 3.004752 ACACCAATTGGCTACTCCATC 57.995 47.619 24.79 0.00 46.04 3.51
1410 1490 2.969821 AACACCAATTGGCTACTCCA 57.030 45.000 24.79 0.00 44.85 3.86
1411 1491 3.191371 CAGAAACACCAATTGGCTACTCC 59.809 47.826 24.79 9.50 39.32 3.85
1412 1492 4.072131 TCAGAAACACCAATTGGCTACTC 58.928 43.478 24.79 15.36 39.32 2.59
1413 1493 4.098914 TCAGAAACACCAATTGGCTACT 57.901 40.909 24.79 13.28 39.32 2.57
1414 1494 4.702131 AGATCAGAAACACCAATTGGCTAC 59.298 41.667 24.79 11.31 39.32 3.58
1415 1495 4.922206 AGATCAGAAACACCAATTGGCTA 58.078 39.130 24.79 1.56 39.32 3.93
1416 1496 3.771216 AGATCAGAAACACCAATTGGCT 58.229 40.909 24.79 10.01 39.32 4.75
1417 1497 4.525912 AAGATCAGAAACACCAATTGGC 57.474 40.909 24.79 7.67 39.32 4.52
1418 1498 9.492973 AAAATTAAGATCAGAAACACCAATTGG 57.507 29.630 23.31 23.31 42.17 3.16
1420 1500 9.492973 CCAAAATTAAGATCAGAAACACCAATT 57.507 29.630 0.00 0.00 0.00 2.32
1421 1501 8.096414 CCCAAAATTAAGATCAGAAACACCAAT 58.904 33.333 0.00 0.00 0.00 3.16
1422 1502 7.070571 ACCCAAAATTAAGATCAGAAACACCAA 59.929 33.333 0.00 0.00 0.00 3.67
1423 1503 6.553100 ACCCAAAATTAAGATCAGAAACACCA 59.447 34.615 0.00 0.00 0.00 4.17
1476 1563 3.258622 AGTCAAACCTACACTCCACTAGC 59.741 47.826 0.00 0.00 0.00 3.42
1511 1598 7.962995 AACCCCAACCAAAAATAACAAATTT 57.037 28.000 0.00 0.00 0.00 1.82
1512 1599 8.495260 TCTAACCCCAACCAAAAATAACAAATT 58.505 29.630 0.00 0.00 0.00 1.82
1513 1600 8.035448 TCTAACCCCAACCAAAAATAACAAAT 57.965 30.769 0.00 0.00 0.00 2.32
1554 1641 9.959721 ACTGAGCTTTCCTGATACTTTAATTAA 57.040 29.630 0.00 0.00 0.00 1.40
1736 1834 6.154363 CCCCAACCATAACAAATATCAACACT 59.846 38.462 0.00 0.00 0.00 3.55
1802 1902 3.733443 ATTGCTGACCCTTTTTCACAC 57.267 42.857 0.00 0.00 0.00 3.82
1852 1952 6.223351 ACTACCTTCCAAGCTAGTACAATC 57.777 41.667 0.00 0.00 28.28 2.67
1859 1959 4.101741 AGGCATTACTACCTTCCAAGCTAG 59.898 45.833 0.00 0.00 29.74 3.42
1860 1960 4.037927 AGGCATTACTACCTTCCAAGCTA 58.962 43.478 0.00 0.00 29.74 3.32
1861 1961 2.846827 AGGCATTACTACCTTCCAAGCT 59.153 45.455 0.00 0.00 29.74 3.74
1884 1984 3.039252 TCCAAAAAGGAAGGCCAAGAA 57.961 42.857 5.01 0.00 45.65 2.52
1974 2079 5.631929 GGGAATACAAAACGCCTACTTTTTG 59.368 40.000 5.47 5.47 45.58 2.44
1977 2082 4.659115 AGGGAATACAAAACGCCTACTTT 58.341 39.130 0.00 0.00 0.00 2.66
1979 2084 3.994931 AGGGAATACAAAACGCCTACT 57.005 42.857 0.00 0.00 0.00 2.57
1980 2085 5.181009 ACTTAGGGAATACAAAACGCCTAC 58.819 41.667 0.00 0.00 0.00 3.18
1981 2086 5.425196 ACTTAGGGAATACAAAACGCCTA 57.575 39.130 0.00 0.00 0.00 3.93
1982 2087 4.296621 ACTTAGGGAATACAAAACGCCT 57.703 40.909 0.00 0.00 0.00 5.52
1984 2089 4.456566 TCCAACTTAGGGAATACAAAACGC 59.543 41.667 0.00 0.00 0.00 4.84
1985 2090 6.563222 TTCCAACTTAGGGAATACAAAACG 57.437 37.500 0.00 0.00 39.44 3.60
1999 2104 2.299013 TCTCTCGCTTGCTTCCAACTTA 59.701 45.455 0.00 0.00 0.00 2.24
2025 2130 1.669265 CGCATTGTGTGATGATGAGCT 59.331 47.619 0.00 0.00 0.00 4.09
2026 2131 1.399440 ACGCATTGTGTGATGATGAGC 59.601 47.619 1.23 0.00 0.00 4.26
2027 2132 2.674357 TCACGCATTGTGTGATGATGAG 59.326 45.455 25.11 1.87 46.14 2.90
2120 2236 4.911390 AGGAATCATCGACAAAAAGGACT 58.089 39.130 0.00 0.00 0.00 3.85
2131 2248 2.365582 TGACACGAGAGGAATCATCGA 58.634 47.619 8.37 0.00 39.66 3.59
2132 2249 2.851805 TGACACGAGAGGAATCATCG 57.148 50.000 0.00 1.21 42.04 3.84
2136 2253 4.509600 GGATCATTTGACACGAGAGGAATC 59.490 45.833 0.00 0.00 0.00 2.52
2137 2254 4.080919 TGGATCATTTGACACGAGAGGAAT 60.081 41.667 0.00 0.00 0.00 3.01
2138 2255 3.260632 TGGATCATTTGACACGAGAGGAA 59.739 43.478 0.00 0.00 0.00 3.36
2139 2256 2.831526 TGGATCATTTGACACGAGAGGA 59.168 45.455 0.00 0.00 0.00 3.71
2140 2257 3.251479 TGGATCATTTGACACGAGAGG 57.749 47.619 0.00 0.00 0.00 3.69
2141 2258 5.808042 AAATGGATCATTTGACACGAGAG 57.192 39.130 5.23 0.00 41.70 3.20
2142 2259 7.047271 TGATAAATGGATCATTTGACACGAGA 58.953 34.615 14.05 0.00 42.91 4.04
2143 2260 7.250445 TGATAAATGGATCATTTGACACGAG 57.750 36.000 14.05 0.00 42.91 4.18
2144 2261 7.498570 TGATGATAAATGGATCATTTGACACGA 59.501 33.333 14.05 0.00 44.78 4.35
2145 2262 7.641760 TGATGATAAATGGATCATTTGACACG 58.358 34.615 14.05 0.00 44.78 4.49
2146 2263 9.406828 CATGATGATAAATGGATCATTTGACAC 57.593 33.333 14.05 9.58 44.78 3.67
2147 2264 9.357161 TCATGATGATAAATGGATCATTTGACA 57.643 29.630 14.05 13.16 44.78 3.58
2205 2322 2.217167 GTGTAATCGACCGAAATACCGC 59.783 50.000 12.77 5.91 0.00 5.68
2255 2372 2.621070 ACTGCAGGAAGGGAGAAGTAA 58.379 47.619 19.93 0.00 0.00 2.24
2256 2373 2.327325 ACTGCAGGAAGGGAGAAGTA 57.673 50.000 19.93 0.00 0.00 2.24
2257 2374 1.903183 GTACTGCAGGAAGGGAGAAGT 59.097 52.381 19.93 0.00 0.00 3.01
2258 2375 1.134965 CGTACTGCAGGAAGGGAGAAG 60.135 57.143 19.93 0.00 0.00 2.85
2261 2378 1.153549 GCGTACTGCAGGAAGGGAG 60.154 63.158 19.93 3.10 45.45 4.30
2292 2413 1.745115 GCTGCACCAACGCTGGATA 60.745 57.895 12.82 0.00 46.92 2.59
2331 2452 6.753180 TGTTTTTACCTGCAAGCATATTTCA 58.247 32.000 0.00 0.00 0.00 2.69
2356 2477 8.189119 TCAGGTAGATAGGCAATTTTGTTTTT 57.811 30.769 0.00 0.00 0.00 1.94
2360 2481 5.760253 CGATCAGGTAGATAGGCAATTTTGT 59.240 40.000 0.00 0.00 37.00 2.83
2361 2482 5.991606 TCGATCAGGTAGATAGGCAATTTTG 59.008 40.000 0.00 0.00 37.00 2.44
2378 2499 5.234329 ACAAAAATAGCGGTACATCGATCAG 59.766 40.000 0.00 0.00 0.00 2.90
2379 2500 5.113383 ACAAAAATAGCGGTACATCGATCA 58.887 37.500 0.00 0.00 0.00 2.92
2384 2505 7.358848 CCAACAAAACAAAAATAGCGGTACATC 60.359 37.037 0.00 0.00 0.00 3.06
2389 2510 4.760878 ACCAACAAAACAAAAATAGCGGT 58.239 34.783 0.00 0.00 0.00 5.68
2390 2511 5.292101 TCAACCAACAAAACAAAAATAGCGG 59.708 36.000 0.00 0.00 0.00 5.52
2391 2512 6.337853 TCAACCAACAAAACAAAAATAGCG 57.662 33.333 0.00 0.00 0.00 4.26
2392 2513 8.956617 TTTTCAACCAACAAAACAAAAATAGC 57.043 26.923 0.00 0.00 0.00 2.97
2424 2546 7.549134 TCATAAGACTAAGGCTACACATGTTTG 59.451 37.037 0.00 0.00 0.00 2.93
2436 2558 4.340950 ACAGAGAGCTCATAAGACTAAGGC 59.659 45.833 17.77 0.00 0.00 4.35
2438 2560 9.462174 CATAAACAGAGAGCTCATAAGACTAAG 57.538 37.037 17.77 0.00 0.00 2.18
2451 2573 4.142534 TGAATTGCTGCATAAACAGAGAGC 60.143 41.667 1.84 0.00 40.25 4.09
2462 2584 1.327690 CCTGGCCTGAATTGCTGCAT 61.328 55.000 11.88 0.00 0.00 3.96
2487 2609 2.398128 GAACAGCTGCTGTGGTGCAC 62.398 60.000 33.53 17.12 44.62 4.57
2491 2613 1.526917 GTGGAACAGCTGCTGTGGT 60.527 57.895 33.53 20.53 44.62 4.16
2550 2672 1.687660 TGCATCAGGAAAAAGCTTGCA 59.312 42.857 0.00 0.00 36.37 4.08
2551 2673 2.443887 TGCATCAGGAAAAAGCTTGC 57.556 45.000 0.00 0.00 0.00 4.01
2580 2702 7.422878 AGAGACGTTTTACAAAGAGAAATCC 57.577 36.000 0.00 0.00 0.00 3.01
2584 2706 6.592607 ACACAAGAGACGTTTTACAAAGAGAA 59.407 34.615 0.00 0.00 0.00 2.87
2605 2729 1.385347 AGTTCCCCCTGTGGACACA 60.385 57.895 4.92 4.92 39.32 3.72
2718 2842 2.347322 GCTGCTCCTCGTCCTGACT 61.347 63.158 0.00 0.00 0.00 3.41
2775 2899 2.027192 TCCAACCACAGCCTATTCTGAC 60.027 50.000 0.00 0.00 37.51 3.51
2791 2923 3.766051 AGAAAGCCCTTCATTGATCCAAC 59.234 43.478 0.00 0.00 36.40 3.77
2832 2964 3.424703 AGGAACTGTTGGATCACAATGG 58.575 45.455 0.00 0.00 41.95 3.16
2942 3074 5.111148 TGATCTGATCAAGGCAATGTTGCT 61.111 41.667 17.56 1.49 44.18 3.91
2943 3075 3.129813 TGATCTGATCAAGGCAATGTTGC 59.870 43.478 17.56 9.17 44.09 4.17
2944 3076 4.157105 TGTGATCTGATCAAGGCAATGTTG 59.843 41.667 21.09 0.00 41.69 3.33
2952 3085 2.676839 GTGCTGTGTGATCTGATCAAGG 59.323 50.000 21.09 12.30 41.69 3.61
2953 3086 2.676839 GGTGCTGTGTGATCTGATCAAG 59.323 50.000 21.09 15.80 41.69 3.02
2956 3089 2.277969 CTGGTGCTGTGTGATCTGATC 58.722 52.381 10.72 10.72 0.00 2.92
2959 3092 0.604511 TGCTGGTGCTGTGTGATCTG 60.605 55.000 0.00 0.00 40.48 2.90
2961 3094 1.171308 AATGCTGGTGCTGTGTGATC 58.829 50.000 0.00 0.00 40.48 2.92
2970 3103 2.294233 TCACTGAAGAAAATGCTGGTGC 59.706 45.455 0.00 0.00 40.20 5.01
2980 3113 8.906867 AGAACAAGATCAAATTCACTGAAGAAA 58.093 29.630 0.00 0.00 0.00 2.52
2984 3117 6.919662 GCAAGAACAAGATCAAATTCACTGAA 59.080 34.615 0.00 0.00 0.00 3.02
2985 3118 6.039605 TGCAAGAACAAGATCAAATTCACTGA 59.960 34.615 0.00 0.00 0.00 3.41
2986 3119 6.210796 TGCAAGAACAAGATCAAATTCACTG 58.789 36.000 0.00 0.00 0.00 3.66
2987 3120 6.395426 TGCAAGAACAAGATCAAATTCACT 57.605 33.333 0.00 0.00 0.00 3.41
2988 3121 7.383029 TGAATGCAAGAACAAGATCAAATTCAC 59.617 33.333 0.00 0.00 0.00 3.18
2989 3122 7.435305 TGAATGCAAGAACAAGATCAAATTCA 58.565 30.769 0.00 0.00 0.00 2.57
2990 3123 7.878477 TGAATGCAAGAACAAGATCAAATTC 57.122 32.000 0.00 0.00 0.00 2.17
2991 3124 8.842358 ATTGAATGCAAGAACAAGATCAAATT 57.158 26.923 0.00 0.00 37.45 1.82
2992 3125 8.092068 TGATTGAATGCAAGAACAAGATCAAAT 58.908 29.630 0.00 0.00 37.45 2.32
3012 3155 8.218488 AGATCAGAGGATTGATTGATTGATTGA 58.782 33.333 0.00 0.00 37.90 2.57
3013 3156 8.397575 AGATCAGAGGATTGATTGATTGATTG 57.602 34.615 0.00 0.00 37.90 2.67
3014 3157 8.851145 CAAGATCAGAGGATTGATTGATTGATT 58.149 33.333 0.00 0.00 37.90 2.57
3015 3158 7.999545 ACAAGATCAGAGGATTGATTGATTGAT 59.000 33.333 0.00 0.00 37.90 2.57
3016 3159 7.344134 ACAAGATCAGAGGATTGATTGATTGA 58.656 34.615 0.00 0.00 37.90 2.57
3017 3160 7.569639 ACAAGATCAGAGGATTGATTGATTG 57.430 36.000 0.00 0.00 37.90 2.67
3018 3161 8.591114 AAACAAGATCAGAGGATTGATTGATT 57.409 30.769 0.00 0.00 37.90 2.57
3019 3162 8.467598 CAAAACAAGATCAGAGGATTGATTGAT 58.532 33.333 0.00 0.00 37.90 2.57
3020 3163 7.576287 GCAAAACAAGATCAGAGGATTGATTGA 60.576 37.037 0.00 0.00 37.90 2.57
3021 3164 6.530534 GCAAAACAAGATCAGAGGATTGATTG 59.469 38.462 0.00 3.06 37.90 2.67
3022 3165 6.209986 TGCAAAACAAGATCAGAGGATTGATT 59.790 34.615 0.00 0.00 37.90 2.57
3023 3166 5.713389 TGCAAAACAAGATCAGAGGATTGAT 59.287 36.000 0.00 0.00 40.40 2.57
3024 3167 5.072055 TGCAAAACAAGATCAGAGGATTGA 58.928 37.500 0.00 0.00 32.67 2.57
3025 3168 5.381174 TGCAAAACAAGATCAGAGGATTG 57.619 39.130 0.00 0.00 32.67 2.67
3026 3169 6.600882 AATGCAAAACAAGATCAGAGGATT 57.399 33.333 0.00 0.00 32.67 3.01
3027 3170 6.600882 AAATGCAAAACAAGATCAGAGGAT 57.399 33.333 0.00 0.00 36.13 3.24
3028 3171 6.409524 AAAATGCAAAACAAGATCAGAGGA 57.590 33.333 0.00 0.00 0.00 3.71
3075 3222 2.743928 GCGGTCCTCAGCACAAGG 60.744 66.667 0.00 0.00 35.02 3.61
3150 3297 1.702491 GGATTACCTGTTGGCGACGC 61.702 60.000 12.43 12.43 36.63 5.19
3174 3321 1.843368 ACAATGGCTGGTCATTCAGG 58.157 50.000 0.00 0.00 35.40 3.86
3215 3362 5.043903 CCAACTGTTATCAGGATCACTACG 58.956 45.833 5.80 0.00 45.14 3.51
3231 3378 2.281070 CTGCTGACGGCCAACTGT 60.281 61.111 2.24 0.00 40.92 3.55
3236 3383 2.280797 GTGTTCTGCTGACGGCCA 60.281 61.111 2.24 0.00 40.92 5.36
3237 3384 2.031163 AGTGTTCTGCTGACGGCC 59.969 61.111 3.22 0.00 40.92 6.13
3239 3386 2.263077 GTATCAGTGTTCTGCTGACGG 58.737 52.381 0.00 0.00 44.52 4.79
3240 3387 2.263077 GGTATCAGTGTTCTGCTGACG 58.737 52.381 0.00 0.00 44.52 4.35
3241 3388 3.257393 CTGGTATCAGTGTTCTGCTGAC 58.743 50.000 0.00 0.00 44.52 3.51
3242 3389 3.599730 CTGGTATCAGTGTTCTGCTGA 57.400 47.619 0.00 0.00 45.59 4.26
3334 3481 2.677875 CCCTGGTTTCCCTGCAGC 60.678 66.667 8.66 0.00 0.00 5.25
3391 3538 1.064314 TCTTCTTCCTCCTCCTCCTCG 60.064 57.143 0.00 0.00 0.00 4.63
3392 3539 2.666317 CTCTTCTTCCTCCTCCTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
3393 3540 1.290732 CCTCTTCTTCCTCCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
3394 3541 1.289530 TCCTCTTCTTCCTCCTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
3395 3542 2.838637 TCCTCTTCTTCCTCCTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
3396 3543 2.959171 GCATCCTCTTCTTCCTCCTCCT 60.959 54.545 0.00 0.00 0.00 3.69
3397 3544 1.416030 GCATCCTCTTCTTCCTCCTCC 59.584 57.143 0.00 0.00 0.00 4.30
3398 3545 1.416030 GGCATCCTCTTCTTCCTCCTC 59.584 57.143 0.00 0.00 0.00 3.71
3399 3546 1.274069 TGGCATCCTCTTCTTCCTCCT 60.274 52.381 0.00 0.00 0.00 3.69
3435 3591 4.338710 GTGGTTGGTAGCGGGGCA 62.339 66.667 0.00 0.00 0.00 5.36
3439 3595 2.510064 TAAGGCGTGGTTGGTAGCGG 62.510 60.000 0.00 0.00 0.00 5.52
3464 3620 4.098044 CCGACTTGTATGGTGTCAGTAGAT 59.902 45.833 0.00 0.00 0.00 1.98
3529 3685 6.116126 ACTACATCAGTATCTTTTTCCCTGC 58.884 40.000 0.00 0.00 34.98 4.85
3661 3817 1.558756 CTCTTGAACATGGGAGAGCCT 59.441 52.381 0.00 0.00 30.39 4.58
3662 3818 1.556911 TCTCTTGAACATGGGAGAGCC 59.443 52.381 0.00 0.00 36.45 4.70
3685 3843 6.017192 GCTTCCATTTGCAAGTAATTTTTGGT 60.017 34.615 0.00 0.00 0.00 3.67
3688 3846 7.565323 TTGCTTCCATTTGCAAGTAATTTTT 57.435 28.000 0.00 0.00 43.17 1.94
3706 3865 5.024785 AGGTACTGGCTTATACTTGCTTC 57.975 43.478 0.00 0.00 37.18 3.86
3708 3867 6.555360 AGATAAGGTACTGGCTTATACTTGCT 59.445 38.462 3.68 0.00 40.86 3.91
3710 3869 7.727181 ACAGATAAGGTACTGGCTTATACTTG 58.273 38.462 0.00 5.69 40.86 3.16
3713 3872 7.498443 ACAACAGATAAGGTACTGGCTTATAC 58.502 38.462 0.00 0.32 40.86 1.47
3716 3875 6.368779 AACAACAGATAAGGTACTGGCTTA 57.631 37.500 0.00 0.00 40.86 3.09
3718 3877 4.910458 AACAACAGATAAGGTACTGGCT 57.090 40.909 0.00 0.00 40.86 4.75
3722 3881 6.435292 ACTGGAAACAACAGATAAGGTACT 57.565 37.500 0.00 0.00 40.79 2.73
3726 3885 5.186198 CCCTACTGGAAACAACAGATAAGG 58.814 45.833 0.00 0.00 42.06 2.69
3729 3888 7.504926 AATACCCTACTGGAAACAACAGATA 57.495 36.000 0.00 0.00 42.06 1.98
3731 3890 5.836024 AATACCCTACTGGAAACAACAGA 57.164 39.130 0.00 0.00 42.06 3.41
3733 3892 7.288560 TGTTAAATACCCTACTGGAAACAACA 58.711 34.615 0.00 0.00 42.06 3.33
3735 3894 8.164733 TCATGTTAAATACCCTACTGGAAACAA 58.835 33.333 0.00 0.00 42.06 2.83
3738 3897 9.184523 CAATCATGTTAAATACCCTACTGGAAA 57.815 33.333 0.00 0.00 38.00 3.13
3740 3899 8.096621 TCAATCATGTTAAATACCCTACTGGA 57.903 34.615 0.00 0.00 38.00 3.86
3742 3901 9.784531 AGATCAATCATGTTAAATACCCTACTG 57.215 33.333 0.00 0.00 0.00 2.74
3747 3906 9.561069 ACTGTAGATCAATCATGTTAAATACCC 57.439 33.333 0.00 0.00 0.00 3.69
3796 3955 4.701765 ACTGATCAATAGTCCATGCACTC 58.298 43.478 0.00 0.00 0.00 3.51
3797 3956 4.767578 ACTGATCAATAGTCCATGCACT 57.232 40.909 0.00 0.00 0.00 4.40
3953 4120 2.104451 ACAGCTGCTCTTCTATGGATGG 59.896 50.000 15.27 0.00 0.00 3.51
3993 4160 4.152647 ACTTATCAGACCTGTGACTGTGA 58.847 43.478 0.00 0.00 35.99 3.58
3994 4161 4.527509 ACTTATCAGACCTGTGACTGTG 57.472 45.455 0.00 0.00 35.99 3.66
3995 4162 5.186021 CCTAACTTATCAGACCTGTGACTGT 59.814 44.000 0.00 0.00 35.99 3.55
3996 4163 5.394663 CCCTAACTTATCAGACCTGTGACTG 60.395 48.000 0.00 0.00 35.88 3.51
3997 4164 4.712337 CCCTAACTTATCAGACCTGTGACT 59.288 45.833 0.00 0.00 0.00 3.41
3998 4165 4.141914 CCCCTAACTTATCAGACCTGTGAC 60.142 50.000 0.00 0.00 0.00 3.67
4154 4324 3.678965 ATGGTCTCTGAAGGAGCTCTA 57.321 47.619 14.64 0.00 41.60 2.43
4280 4450 7.995289 ACTGCGTGAAAATCAATGGATTATTA 58.005 30.769 0.00 0.00 42.87 0.98
4281 4451 6.866480 ACTGCGTGAAAATCAATGGATTATT 58.134 32.000 0.00 0.00 42.87 1.40
4347 4517 3.008923 TGGTCAGTACTTCCATTGCATCA 59.991 43.478 11.27 0.00 0.00 3.07
4348 4518 3.609853 TGGTCAGTACTTCCATTGCATC 58.390 45.455 11.27 0.00 0.00 3.91
4438 4610 9.585099 TTGATTGCTTCCATGTATTAATTTGTC 57.415 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.