Multiple sequence alignment - TraesCS3D01G019800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G019800 chr3D 100.000 3641 0 0 1 3641 6675491 6679131 0.000000e+00 6724.0
1 TraesCS3D01G019800 chr3D 97.561 328 6 2 83 408 7428778 7429105 8.830000e-156 560.0
2 TraesCS3D01G019800 chr3D 97.554 327 6 2 84 408 507868340 507868666 3.180000e-155 558.0
3 TraesCS3D01G019800 chr3D 97.264 329 7 2 82 408 557958049 557958377 1.140000e-154 556.0
4 TraesCS3D01G019800 chr3D 78.289 152 28 3 3253 3399 477023572 477023421 3.870000e-15 93.5
5 TraesCS3D01G019800 chr3A 92.875 2021 86 18 983 2981 13536920 13534936 0.000000e+00 2881.0
6 TraesCS3D01G019800 chr3A 93.529 649 20 13 2996 3641 13531185 13530556 0.000000e+00 946.0
7 TraesCS3D01G019800 chr3A 97.297 333 7 2 78 408 145252799 145252467 6.830000e-157 564.0
8 TraesCS3D01G019800 chr3A 97.273 330 7 2 83 410 151184678 151185007 3.180000e-155 558.0
9 TraesCS3D01G019800 chr3A 87.082 449 26 14 409 856 13537497 13537080 2.540000e-131 479.0
10 TraesCS3D01G019800 chr3A 95.181 83 2 2 2 83 13537601 13537520 2.950000e-26 130.0
11 TraesCS3D01G019800 chr3B 92.209 1874 97 21 963 2826 8073300 8075134 0.000000e+00 2606.0
12 TraesCS3D01G019800 chr3B 97.561 328 6 2 84 409 767496191 767495864 8.830000e-156 560.0
13 TraesCS3D01G019800 chr3B 89.071 183 10 5 432 608 8072511 8072689 6.120000e-53 219.0
14 TraesCS3D01G019800 chr3B 76.081 393 78 13 3253 3641 636265824 636265444 1.330000e-44 191.0
15 TraesCS3D01G019800 chr3B 91.803 122 5 3 635 752 8073091 8073211 8.090000e-37 165.0
16 TraesCS3D01G019800 chr3B 92.593 81 6 0 3 83 8071942 8072022 2.300000e-22 117.0
17 TraesCS3D01G019800 chr2D 85.062 1533 190 21 1122 2630 30328691 30327174 0.000000e+00 1526.0
18 TraesCS3D01G019800 chr2D 88.889 1026 108 5 1594 2613 174457807 174456782 0.000000e+00 1258.0
19 TraesCS3D01G019800 chr2D 87.945 365 44 0 1126 1490 174458231 174457867 7.220000e-117 431.0
20 TraesCS3D01G019800 chr1A 84.143 1482 197 26 1129 2588 18085885 18084420 0.000000e+00 1400.0
21 TraesCS3D01G019800 chr1A 90.514 253 18 3 2840 3087 94697072 94696821 2.710000e-86 329.0
22 TraesCS3D01G019800 chr2B 88.306 992 110 6 1594 2579 222235504 222234513 0.000000e+00 1184.0
23 TraesCS3D01G019800 chr2B 87.397 365 46 0 1126 1490 222235993 222235629 1.560000e-113 420.0
24 TraesCS3D01G019800 chr2B 89.600 250 20 3 2840 3084 391272462 391272710 2.730000e-81 313.0
25 TraesCS3D01G019800 chr2A 88.876 890 90 6 1594 2474 174445818 174444929 0.000000e+00 1086.0
26 TraesCS3D01G019800 chr2A 86.640 1003 105 10 1593 2580 3538979 3539967 0.000000e+00 1083.0
27 TraesCS3D01G019800 chr2A 86.301 365 50 0 1126 1490 174446295 174445931 7.330000e-107 398.0
28 TraesCS3D01G019800 chr2A 90.123 81 8 0 3 83 468582001 468582081 4.970000e-19 106.0
29 TraesCS3D01G019800 chr1D 85.431 1009 125 8 1587 2588 16897879 16896886 0.000000e+00 1029.0
30 TraesCS3D01G019800 chr1B 88.347 841 90 5 1755 2588 30847163 30846324 0.000000e+00 1003.0
31 TraesCS3D01G019800 chr1B 96.979 331 8 2 81 409 388231540 388231870 4.110000e-154 555.0
32 TraesCS3D01G019800 chr7A 97.264 329 7 2 83 409 651309916 651309588 1.140000e-154 556.0
33 TraesCS3D01G019800 chr7A 81.735 438 55 19 3213 3641 139107308 139107729 3.480000e-90 342.0
34 TraesCS3D01G019800 chr7A 80.866 439 64 18 3213 3641 138985173 138985601 9.750000e-86 327.0
35 TraesCS3D01G019800 chr6B 96.154 338 10 3 75 409 698968422 698968759 1.910000e-152 549.0
36 TraesCS3D01G019800 chr5A 89.328 253 21 5 2840 3087 667743656 667743907 2.730000e-81 313.0
37 TraesCS3D01G019800 chr7D 79.765 425 48 22 3213 3631 139086304 139086696 1.290000e-69 274.0
38 TraesCS3D01G019800 chr7B 84.049 163 21 4 3474 3634 678675710 678675869 6.300000e-33 152.0
39 TraesCS3D01G019800 chr6A 92.405 79 6 0 3 81 63173127 63173205 2.970000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G019800 chr3D 6675491 6679131 3640 False 6724.00 6724 100.00000 1 3641 1 chr3D.!!$F1 3640
1 TraesCS3D01G019800 chr3A 13530556 13537601 7045 True 1109.00 2881 92.16675 2 3641 4 chr3A.!!$R2 3639
2 TraesCS3D01G019800 chr3B 8071942 8075134 3192 False 776.75 2606 91.41900 3 2826 4 chr3B.!!$F1 2823
3 TraesCS3D01G019800 chr2D 30327174 30328691 1517 True 1526.00 1526 85.06200 1122 2630 1 chr2D.!!$R1 1508
4 TraesCS3D01G019800 chr2D 174456782 174458231 1449 True 844.50 1258 88.41700 1126 2613 2 chr2D.!!$R2 1487
5 TraesCS3D01G019800 chr1A 18084420 18085885 1465 True 1400.00 1400 84.14300 1129 2588 1 chr1A.!!$R1 1459
6 TraesCS3D01G019800 chr2B 222234513 222235993 1480 True 802.00 1184 87.85150 1126 2579 2 chr2B.!!$R1 1453
7 TraesCS3D01G019800 chr2A 3538979 3539967 988 False 1083.00 1083 86.64000 1593 2580 1 chr2A.!!$F1 987
8 TraesCS3D01G019800 chr2A 174444929 174446295 1366 True 742.00 1086 87.58850 1126 2474 2 chr2A.!!$R1 1348
9 TraesCS3D01G019800 chr1D 16896886 16897879 993 True 1029.00 1029 85.43100 1587 2588 1 chr1D.!!$R1 1001
10 TraesCS3D01G019800 chr1B 30846324 30847163 839 True 1003.00 1003 88.34700 1755 2588 1 chr1B.!!$R1 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 1595 0.031178 CACCTGTGCTTCACTTTGCC 59.969 55.0 0.00 0.0 35.11 4.52 F
1554 2482 0.179145 CGTGTAGGCCGGAGTACTTG 60.179 60.0 5.05 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 3114 0.979709 CCATCTCCTGCAGGACCTCA 60.980 60.0 32.00 15.62 39.78 3.86 R
2841 3844 0.179073 GTGTGACCCATGGATCTCCG 60.179 60.0 15.22 0.00 39.43 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 6.439636 TGCTTCCCTATAGCAATGAATACT 57.560 37.500 0.00 0.00 45.05 2.12
87 89 6.467677 TGCTTCCCTATAGCAATGAATACTC 58.532 40.000 0.00 0.00 45.05 2.59
88 90 5.877564 GCTTCCCTATAGCAATGAATACTCC 59.122 44.000 0.00 0.00 38.51 3.85
90 92 5.665701 TCCCTATAGCAATGAATACTCCCT 58.334 41.667 0.00 0.00 0.00 4.20
91 93 5.721960 TCCCTATAGCAATGAATACTCCCTC 59.278 44.000 0.00 0.00 0.00 4.30
93 95 5.723887 CCTATAGCAATGAATACTCCCTCCT 59.276 44.000 0.00 0.00 0.00 3.69
94 96 6.214412 CCTATAGCAATGAATACTCCCTCCTT 59.786 42.308 0.00 0.00 0.00 3.36
96 98 4.786425 AGCAATGAATACTCCCTCCTTTC 58.214 43.478 0.00 0.00 0.00 2.62
97 99 4.476479 AGCAATGAATACTCCCTCCTTTCT 59.524 41.667 0.00 0.00 0.00 2.52
98 100 4.578105 GCAATGAATACTCCCTCCTTTCTG 59.422 45.833 0.00 0.00 0.00 3.02
99 101 5.128919 CAATGAATACTCCCTCCTTTCTGG 58.871 45.833 0.00 0.00 37.10 3.86
100 102 3.803340 TGAATACTCCCTCCTTTCTGGT 58.197 45.455 0.00 0.00 37.07 4.00
101 103 4.175962 TGAATACTCCCTCCTTTCTGGTT 58.824 43.478 0.00 0.00 37.07 3.67
103 105 5.788533 TGAATACTCCCTCCTTTCTGGTTTA 59.211 40.000 0.00 0.00 37.07 2.01
104 106 6.447084 TGAATACTCCCTCCTTTCTGGTTTAT 59.553 38.462 0.00 0.00 37.07 1.40
105 107 7.626084 TGAATACTCCCTCCTTTCTGGTTTATA 59.374 37.037 0.00 0.00 37.07 0.98
106 108 5.959583 ACTCCCTCCTTTCTGGTTTATAG 57.040 43.478 0.00 0.00 37.07 1.31
107 109 4.722279 ACTCCCTCCTTTCTGGTTTATAGG 59.278 45.833 0.00 0.00 37.07 2.57
108 110 4.045022 TCCCTCCTTTCTGGTTTATAGGG 58.955 47.826 0.00 0.00 43.08 3.53
109 111 3.435169 CCCTCCTTTCTGGTTTATAGGGC 60.435 52.174 0.00 0.00 37.92 5.19
110 112 3.459969 CCTCCTTTCTGGTTTATAGGGCT 59.540 47.826 0.00 0.00 37.07 5.19
111 113 4.079730 CCTCCTTTCTGGTTTATAGGGCTT 60.080 45.833 0.00 0.00 37.07 4.35
112 114 5.132144 CCTCCTTTCTGGTTTATAGGGCTTA 59.868 44.000 0.00 0.00 37.07 3.09
113 115 6.183361 CCTCCTTTCTGGTTTATAGGGCTTAT 60.183 42.308 0.00 0.00 37.07 1.73
114 116 6.838382 TCCTTTCTGGTTTATAGGGCTTATC 58.162 40.000 0.00 0.00 37.07 1.75
115 117 6.619852 TCCTTTCTGGTTTATAGGGCTTATCT 59.380 38.462 0.00 0.00 37.07 1.98
116 118 6.937465 CCTTTCTGGTTTATAGGGCTTATCTC 59.063 42.308 0.00 0.00 0.00 2.75
117 119 7.420214 CCTTTCTGGTTTATAGGGCTTATCTCA 60.420 40.741 0.00 0.00 0.00 3.27
118 120 7.446106 TTCTGGTTTATAGGGCTTATCTCAA 57.554 36.000 0.00 0.00 0.00 3.02
119 121 7.446106 TCTGGTTTATAGGGCTTATCTCAAA 57.554 36.000 0.00 0.00 0.00 2.69
120 122 7.867921 TCTGGTTTATAGGGCTTATCTCAAAA 58.132 34.615 0.00 0.00 0.00 2.44
121 123 8.502738 TCTGGTTTATAGGGCTTATCTCAAAAT 58.497 33.333 0.00 0.00 0.00 1.82
122 124 9.136323 CTGGTTTATAGGGCTTATCTCAAAATT 57.864 33.333 0.00 0.00 0.00 1.82
123 125 9.487442 TGGTTTATAGGGCTTATCTCAAAATTT 57.513 29.630 0.00 0.00 0.00 1.82
157 159 9.434420 TTCATTTTATAAGGCTCAATTTGGTTG 57.566 29.630 0.00 0.00 39.25 3.77
158 160 8.592809 TCATTTTATAAGGCTCAATTTGGTTGT 58.407 29.630 0.00 0.00 38.95 3.32
159 161 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
160 162 9.791801 ATTTTATAAGGCTCAATTTGGTTGTTT 57.208 25.926 0.00 0.00 38.95 2.83
161 163 9.620259 TTTTATAAGGCTCAATTTGGTTGTTTT 57.380 25.926 0.00 0.00 38.95 2.43
162 164 8.825667 TTATAAGGCTCAATTTGGTTGTTTTC 57.174 30.769 0.00 0.00 38.95 2.29
163 165 4.071961 AGGCTCAATTTGGTTGTTTTCC 57.928 40.909 0.00 0.00 38.95 3.13
164 166 3.454082 AGGCTCAATTTGGTTGTTTTCCA 59.546 39.130 0.00 0.00 38.95 3.53
165 167 4.102996 AGGCTCAATTTGGTTGTTTTCCAT 59.897 37.500 0.00 0.00 38.95 3.41
166 168 4.452114 GGCTCAATTTGGTTGTTTTCCATC 59.548 41.667 0.00 0.00 38.95 3.51
167 169 5.055812 GCTCAATTTGGTTGTTTTCCATCA 58.944 37.500 0.00 0.00 38.95 3.07
168 170 5.050159 GCTCAATTTGGTTGTTTTCCATCAC 60.050 40.000 0.00 0.00 38.95 3.06
169 171 5.982356 TCAATTTGGTTGTTTTCCATCACA 58.018 33.333 0.00 0.00 38.95 3.58
170 172 6.590068 TCAATTTGGTTGTTTTCCATCACAT 58.410 32.000 0.00 0.00 38.95 3.21
171 173 6.482641 TCAATTTGGTTGTTTTCCATCACATG 59.517 34.615 0.00 0.00 38.95 3.21
172 174 5.350504 TTTGGTTGTTTTCCATCACATGT 57.649 34.783 0.00 0.00 34.75 3.21
173 175 5.350504 TTGGTTGTTTTCCATCACATGTT 57.649 34.783 0.00 0.00 34.75 2.71
174 176 4.942852 TGGTTGTTTTCCATCACATGTTC 58.057 39.130 0.00 0.00 0.00 3.18
175 177 4.403752 TGGTTGTTTTCCATCACATGTTCA 59.596 37.500 0.00 0.00 0.00 3.18
176 178 4.984161 GGTTGTTTTCCATCACATGTTCAG 59.016 41.667 0.00 0.00 0.00 3.02
177 179 5.221224 GGTTGTTTTCCATCACATGTTCAGA 60.221 40.000 0.00 0.00 0.00 3.27
178 180 6.449698 GTTGTTTTCCATCACATGTTCAGAT 58.550 36.000 0.00 0.00 0.00 2.90
179 181 6.653526 TGTTTTCCATCACATGTTCAGATT 57.346 33.333 0.00 0.00 0.00 2.40
180 182 6.680810 TGTTTTCCATCACATGTTCAGATTC 58.319 36.000 0.00 0.00 0.00 2.52
181 183 5.902613 TTTCCATCACATGTTCAGATTCC 57.097 39.130 0.00 0.00 0.00 3.01
182 184 4.573021 TCCATCACATGTTCAGATTCCA 57.427 40.909 0.00 0.00 0.00 3.53
183 185 4.920999 TCCATCACATGTTCAGATTCCAA 58.079 39.130 0.00 0.00 0.00 3.53
184 186 4.945543 TCCATCACATGTTCAGATTCCAAG 59.054 41.667 0.00 0.00 0.00 3.61
185 187 4.097437 CCATCACATGTTCAGATTCCAAGG 59.903 45.833 0.00 0.00 0.00 3.61
186 188 4.371624 TCACATGTTCAGATTCCAAGGT 57.628 40.909 0.00 0.00 0.00 3.50
187 189 4.074259 TCACATGTTCAGATTCCAAGGTG 58.926 43.478 0.00 0.00 0.00 4.00
188 190 2.821969 ACATGTTCAGATTCCAAGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
189 191 2.655090 TGTTCAGATTCCAAGGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
190 192 3.159213 TGTTCAGATTCCAAGGTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
191 193 3.499338 TGTTCAGATTCCAAGGTGCATT 58.501 40.909 0.00 0.00 0.00 3.56
192 194 4.661222 TGTTCAGATTCCAAGGTGCATTA 58.339 39.130 0.00 0.00 0.00 1.90
193 195 5.076182 TGTTCAGATTCCAAGGTGCATTAA 58.924 37.500 0.00 0.00 0.00 1.40
194 196 5.538053 TGTTCAGATTCCAAGGTGCATTAAA 59.462 36.000 0.00 0.00 0.00 1.52
195 197 6.211184 TGTTCAGATTCCAAGGTGCATTAAAT 59.789 34.615 0.00 0.00 0.00 1.40
196 198 6.455360 TCAGATTCCAAGGTGCATTAAATC 57.545 37.500 0.00 0.00 0.00 2.17
197 199 5.951148 TCAGATTCCAAGGTGCATTAAATCA 59.049 36.000 0.00 0.00 0.00 2.57
198 200 6.608405 TCAGATTCCAAGGTGCATTAAATCAT 59.392 34.615 0.00 0.00 0.00 2.45
199 201 7.124599 TCAGATTCCAAGGTGCATTAAATCATT 59.875 33.333 0.00 0.00 0.00 2.57
200 202 7.223971 CAGATTCCAAGGTGCATTAAATCATTG 59.776 37.037 0.00 0.00 0.00 2.82
201 203 4.757594 TCCAAGGTGCATTAAATCATTGC 58.242 39.130 0.00 0.00 36.91 3.56
202 204 4.222366 TCCAAGGTGCATTAAATCATTGCA 59.778 37.500 0.00 0.00 43.63 4.08
203 205 5.104859 TCCAAGGTGCATTAAATCATTGCAT 60.105 36.000 4.14 0.00 46.90 3.96
204 206 5.007234 CCAAGGTGCATTAAATCATTGCATG 59.993 40.000 4.14 0.00 46.90 4.06
205 207 4.124238 AGGTGCATTAAATCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
206 208 3.872182 GGTGCATTAAATCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
207 209 4.333095 GGTGCATTAAATCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
208 210 5.498159 GTGCATTAAATCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
209 211 5.064198 GTGCATTAAATCATTGCATGCAAGT 59.936 36.000 34.15 21.32 46.90 3.16
210 212 6.256104 GTGCATTAAATCATTGCATGCAAGTA 59.744 34.615 34.15 25.25 46.90 2.24
211 213 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
212 214 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
213 215 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
217 219 8.867112 AAATCATTGCATGCAAGTATTAAGAG 57.133 30.769 34.15 16.39 39.47 2.85
218 220 7.812690 ATCATTGCATGCAAGTATTAAGAGA 57.187 32.000 34.15 20.12 39.47 3.10
219 221 7.628769 TCATTGCATGCAAGTATTAAGAGAA 57.371 32.000 34.15 10.64 39.47 2.87
220 222 8.054152 TCATTGCATGCAAGTATTAAGAGAAA 57.946 30.769 34.15 10.19 39.47 2.52
221 223 8.522003 TCATTGCATGCAAGTATTAAGAGAAAA 58.478 29.630 34.15 9.52 39.47 2.29
222 224 9.309516 CATTGCATGCAAGTATTAAGAGAAAAT 57.690 29.630 34.15 12.14 39.47 1.82
223 225 9.880157 ATTGCATGCAAGTATTAAGAGAAAATT 57.120 25.926 34.15 11.77 39.47 1.82
224 226 8.692110 TGCATGCAAGTATTAAGAGAAAATTG 57.308 30.769 20.30 0.00 0.00 2.32
225 227 8.522003 TGCATGCAAGTATTAAGAGAAAATTGA 58.478 29.630 20.30 0.00 0.00 2.57
226 228 8.801913 GCATGCAAGTATTAAGAGAAAATTGAC 58.198 33.333 14.21 0.00 0.00 3.18
227 229 9.294030 CATGCAAGTATTAAGAGAAAATTGACC 57.706 33.333 0.00 0.00 0.00 4.02
228 230 8.402798 TGCAAGTATTAAGAGAAAATTGACCA 57.597 30.769 0.00 0.00 0.00 4.02
229 231 8.855110 TGCAAGTATTAAGAGAAAATTGACCAA 58.145 29.630 0.00 0.00 0.00 3.67
230 232 9.860898 GCAAGTATTAAGAGAAAATTGACCAAT 57.139 29.630 0.00 0.00 0.00 3.16
232 234 9.860898 AAGTATTAAGAGAAAATTGACCAATGC 57.139 29.630 0.00 0.00 0.00 3.56
233 235 9.023962 AGTATTAAGAGAAAATTGACCAATGCA 57.976 29.630 0.00 0.00 0.00 3.96
234 236 9.807649 GTATTAAGAGAAAATTGACCAATGCAT 57.192 29.630 0.00 0.00 0.00 3.96
235 237 8.712285 ATTAAGAGAAAATTGACCAATGCATG 57.288 30.769 0.00 0.00 0.00 4.06
236 238 5.733620 AGAGAAAATTGACCAATGCATGT 57.266 34.783 0.00 0.00 0.00 3.21
237 239 6.839124 AGAGAAAATTGACCAATGCATGTA 57.161 33.333 0.00 0.00 0.00 2.29
238 240 7.230849 AGAGAAAATTGACCAATGCATGTAA 57.769 32.000 0.00 0.00 0.00 2.41
239 241 7.844009 AGAGAAAATTGACCAATGCATGTAAT 58.156 30.769 0.00 0.00 0.00 1.89
240 242 8.316214 AGAGAAAATTGACCAATGCATGTAATT 58.684 29.630 0.00 0.83 0.00 1.40
241 243 8.851541 AGAAAATTGACCAATGCATGTAATTT 57.148 26.923 0.00 6.84 31.84 1.82
242 244 9.941325 AGAAAATTGACCAATGCATGTAATTTA 57.059 25.926 0.00 0.00 31.07 1.40
309 311 9.612066 TTTTTGAGGAAAACAAGAGCATTAATT 57.388 25.926 0.00 0.00 32.44 1.40
310 312 8.592105 TTTGAGGAAAACAAGAGCATTAATTG 57.408 30.769 0.00 0.00 0.00 2.32
311 313 6.690530 TGAGGAAAACAAGAGCATTAATTGG 58.309 36.000 0.00 0.00 0.00 3.16
312 314 6.041423 AGGAAAACAAGAGCATTAATTGGG 57.959 37.500 0.00 0.00 0.00 4.12
313 315 5.543790 AGGAAAACAAGAGCATTAATTGGGT 59.456 36.000 0.00 0.00 0.00 4.51
314 316 5.639082 GGAAAACAAGAGCATTAATTGGGTG 59.361 40.000 0.00 0.00 0.00 4.61
315 317 3.874392 ACAAGAGCATTAATTGGGTGC 57.126 42.857 4.05 4.05 39.10 5.01
321 323 3.337358 AGCATTAATTGGGTGCTTTTGC 58.663 40.909 7.86 0.00 46.29 3.68
339 341 8.972073 GCTTTTGCAAACTACAAAAAGTATTC 57.028 30.769 12.39 0.00 44.07 1.75
340 342 8.061857 GCTTTTGCAAACTACAAAAAGTATTCC 58.938 33.333 12.39 0.00 44.07 3.01
341 343 9.092876 CTTTTGCAAACTACAAAAAGTATTCCA 57.907 29.630 12.39 0.00 44.07 3.53
342 344 7.995463 TTGCAAACTACAAAAAGTATTCCAC 57.005 32.000 0.00 0.00 30.93 4.02
343 345 7.101652 TGCAAACTACAAAAAGTATTCCACA 57.898 32.000 0.00 0.00 30.93 4.17
344 346 6.975772 TGCAAACTACAAAAAGTATTCCACAC 59.024 34.615 0.00 0.00 30.93 3.82
345 347 7.147983 TGCAAACTACAAAAAGTATTCCACACT 60.148 33.333 0.00 0.00 30.93 3.55
346 348 7.378728 GCAAACTACAAAAAGTATTCCACACTC 59.621 37.037 0.00 0.00 30.93 3.51
347 349 8.402472 CAAACTACAAAAAGTATTCCACACTCA 58.598 33.333 0.00 0.00 30.93 3.41
348 350 7.492352 ACTACAAAAAGTATTCCACACTCAC 57.508 36.000 0.00 0.00 30.93 3.51
349 351 5.767816 ACAAAAAGTATTCCACACTCACC 57.232 39.130 0.00 0.00 0.00 4.02
350 352 4.583073 ACAAAAAGTATTCCACACTCACCC 59.417 41.667 0.00 0.00 0.00 4.61
351 353 4.724279 AAAAGTATTCCACACTCACCCT 57.276 40.909 0.00 0.00 0.00 4.34
352 354 3.983044 AAGTATTCCACACTCACCCTC 57.017 47.619 0.00 0.00 0.00 4.30
353 355 3.191888 AGTATTCCACACTCACCCTCT 57.808 47.619 0.00 0.00 0.00 3.69
354 356 4.332683 AGTATTCCACACTCACCCTCTA 57.667 45.455 0.00 0.00 0.00 2.43
355 357 4.024670 AGTATTCCACACTCACCCTCTAC 58.975 47.826 0.00 0.00 0.00 2.59
356 358 1.640917 TTCCACACTCACCCTCTACC 58.359 55.000 0.00 0.00 0.00 3.18
357 359 0.784495 TCCACACTCACCCTCTACCT 59.216 55.000 0.00 0.00 0.00 3.08
358 360 1.149288 TCCACACTCACCCTCTACCTT 59.851 52.381 0.00 0.00 0.00 3.50
359 361 1.276421 CCACACTCACCCTCTACCTTG 59.724 57.143 0.00 0.00 0.00 3.61
360 362 1.276421 CACACTCACCCTCTACCTTGG 59.724 57.143 0.00 0.00 0.00 3.61
361 363 1.132817 ACACTCACCCTCTACCTTGGT 60.133 52.381 0.00 0.00 0.00 3.67
362 364 1.978580 CACTCACCCTCTACCTTGGTT 59.021 52.381 0.00 0.00 0.00 3.67
363 365 1.978580 ACTCACCCTCTACCTTGGTTG 59.021 52.381 0.00 0.00 0.00 3.77
364 366 1.279271 CTCACCCTCTACCTTGGTTGG 59.721 57.143 0.00 0.00 0.00 3.77
365 367 1.064825 CACCCTCTACCTTGGTTGGT 58.935 55.000 0.00 0.00 43.66 3.67
366 368 1.064825 ACCCTCTACCTTGGTTGGTG 58.935 55.000 0.00 0.00 41.05 4.17
367 369 1.358152 CCCTCTACCTTGGTTGGTGA 58.642 55.000 0.00 0.00 41.05 4.02
368 370 1.279271 CCCTCTACCTTGGTTGGTGAG 59.721 57.143 0.00 2.02 41.05 3.51
369 371 1.978580 CCTCTACCTTGGTTGGTGAGT 59.021 52.381 0.00 0.00 41.05 3.41
370 372 2.372172 CCTCTACCTTGGTTGGTGAGTT 59.628 50.000 0.00 0.00 41.05 3.01
371 373 3.181443 CCTCTACCTTGGTTGGTGAGTTT 60.181 47.826 0.00 0.00 41.05 2.66
372 374 4.461198 CTCTACCTTGGTTGGTGAGTTTT 58.539 43.478 0.00 0.00 41.05 2.43
373 375 4.862371 TCTACCTTGGTTGGTGAGTTTTT 58.138 39.130 0.00 0.00 41.05 1.94
374 376 3.885724 ACCTTGGTTGGTGAGTTTTTG 57.114 42.857 0.00 0.00 39.17 2.44
375 377 3.436243 ACCTTGGTTGGTGAGTTTTTGA 58.564 40.909 0.00 0.00 39.17 2.69
376 378 3.835395 ACCTTGGTTGGTGAGTTTTTGAA 59.165 39.130 0.00 0.00 39.17 2.69
377 379 4.469586 ACCTTGGTTGGTGAGTTTTTGAAT 59.530 37.500 0.00 0.00 39.17 2.57
378 380 5.045942 ACCTTGGTTGGTGAGTTTTTGAATT 60.046 36.000 0.00 0.00 39.17 2.17
379 381 5.294060 CCTTGGTTGGTGAGTTTTTGAATTG 59.706 40.000 0.00 0.00 0.00 2.32
380 382 5.667539 TGGTTGGTGAGTTTTTGAATTGA 57.332 34.783 0.00 0.00 0.00 2.57
381 383 5.659463 TGGTTGGTGAGTTTTTGAATTGAG 58.341 37.500 0.00 0.00 0.00 3.02
382 384 4.507756 GGTTGGTGAGTTTTTGAATTGAGC 59.492 41.667 0.00 0.00 0.00 4.26
383 385 4.320608 TGGTGAGTTTTTGAATTGAGCC 57.679 40.909 0.00 0.00 0.00 4.70
384 386 3.960102 TGGTGAGTTTTTGAATTGAGCCT 59.040 39.130 0.00 0.00 0.00 4.58
385 387 4.405358 TGGTGAGTTTTTGAATTGAGCCTT 59.595 37.500 0.00 0.00 0.00 4.35
386 388 5.596361 TGGTGAGTTTTTGAATTGAGCCTTA 59.404 36.000 0.00 0.00 0.00 2.69
387 389 6.267471 TGGTGAGTTTTTGAATTGAGCCTTAT 59.733 34.615 0.00 0.00 0.00 1.73
388 390 7.450014 TGGTGAGTTTTTGAATTGAGCCTTATA 59.550 33.333 0.00 0.00 0.00 0.98
389 391 8.303876 GGTGAGTTTTTGAATTGAGCCTTATAA 58.696 33.333 0.00 0.00 0.00 0.98
390 392 9.691362 GTGAGTTTTTGAATTGAGCCTTATAAA 57.309 29.630 0.00 0.00 0.00 1.40
391 393 9.691362 TGAGTTTTTGAATTGAGCCTTATAAAC 57.309 29.630 0.00 0.00 0.00 2.01
392 394 9.140286 GAGTTTTTGAATTGAGCCTTATAAACC 57.860 33.333 0.00 0.00 0.00 3.27
393 395 7.812669 AGTTTTTGAATTGAGCCTTATAAACCG 59.187 33.333 0.00 0.00 0.00 4.44
394 396 5.828299 TTGAATTGAGCCTTATAAACCGG 57.172 39.130 0.00 0.00 0.00 5.28
395 397 5.105567 TGAATTGAGCCTTATAAACCGGA 57.894 39.130 9.46 0.00 0.00 5.14
396 398 5.502079 TGAATTGAGCCTTATAAACCGGAA 58.498 37.500 9.46 0.00 0.00 4.30
397 399 5.946972 TGAATTGAGCCTTATAAACCGGAAA 59.053 36.000 9.46 0.00 0.00 3.13
398 400 6.094881 TGAATTGAGCCTTATAAACCGGAAAG 59.905 38.462 9.46 3.38 0.00 2.62
400 402 3.211865 GAGCCTTATAAACCGGAAAGGG 58.788 50.000 9.46 1.63 46.96 3.95
401 403 2.092049 AGCCTTATAAACCGGAAAGGGG 60.092 50.000 9.46 2.20 46.96 4.79
402 404 2.940158 CCTTATAAACCGGAAAGGGGG 58.060 52.381 9.46 0.00 46.96 5.40
439 884 5.186198 GGAGAGTAGCATTTGTAACCATGT 58.814 41.667 0.00 0.00 0.00 3.21
440 885 6.070481 TGGAGAGTAGCATTTGTAACCATGTA 60.070 38.462 0.00 0.00 0.00 2.29
479 924 7.081976 GGCCGGTTATTATGAACATAATCAAC 58.918 38.462 19.08 18.55 41.60 3.18
482 927 7.348956 CGGTTATTATGAACATAATCAACGCA 58.651 34.615 19.00 4.64 39.57 5.24
513 958 5.869753 ATAACATAATCAATGAGCGAGCC 57.130 39.130 0.00 0.00 39.07 4.70
520 965 1.615883 TCAATGAGCGAGCCCTCTATC 59.384 52.381 0.00 0.00 33.02 2.08
567 1016 3.223589 GCGGGCCCTCTCTCTCTC 61.224 72.222 22.43 0.00 0.00 3.20
569 1018 1.840598 CGGGCCCTCTCTCTCTCTA 59.159 63.158 22.43 0.00 0.00 2.43
571 1020 1.613255 CGGGCCCTCTCTCTCTCTATC 60.613 61.905 22.43 0.00 0.00 2.08
580 1029 6.659242 CCCTCTCTCTCTCTATCTATGGTTTC 59.341 46.154 0.00 0.00 0.00 2.78
703 1528 1.100510 CTCACCAGTGCATCATTGGG 58.899 55.000 12.04 2.99 44.06 4.12
728 1553 2.416972 CCGTGTAGCTCAGAGGTAAACC 60.417 54.545 20.07 6.59 33.89 3.27
740 1567 5.713861 TCAGAGGTAAACCCTAACAGTAGAC 59.286 44.000 0.00 0.00 46.51 2.59
755 1582 2.639839 AGTAGACCTTTGATGCACCTGT 59.360 45.455 0.00 0.00 0.00 4.00
768 1595 0.031178 CACCTGTGCTTCACTTTGCC 59.969 55.000 0.00 0.00 35.11 4.52
769 1596 0.395586 ACCTGTGCTTCACTTTGCCA 60.396 50.000 0.00 0.00 35.11 4.92
770 1597 0.963962 CCTGTGCTTCACTTTGCCAT 59.036 50.000 0.00 0.00 35.11 4.40
771 1598 2.161855 CCTGTGCTTCACTTTGCCATA 58.838 47.619 0.00 0.00 35.11 2.74
772 1599 2.756760 CCTGTGCTTCACTTTGCCATAT 59.243 45.455 0.00 0.00 35.11 1.78
773 1600 3.181493 CCTGTGCTTCACTTTGCCATATC 60.181 47.826 0.00 0.00 35.11 1.63
774 1601 3.419943 TGTGCTTCACTTTGCCATATCA 58.580 40.909 0.00 0.00 35.11 2.15
775 1602 3.191162 TGTGCTTCACTTTGCCATATCAC 59.809 43.478 0.00 0.00 35.11 3.06
776 1603 2.754552 TGCTTCACTTTGCCATATCACC 59.245 45.455 0.00 0.00 0.00 4.02
814 1641 0.179225 CCCGTGCATTCGTCGAAAAG 60.179 55.000 12.40 8.93 0.00 2.27
818 1645 1.461127 GTGCATTCGTCGAAAAGAGCT 59.539 47.619 12.40 0.00 0.00 4.09
819 1646 2.666508 GTGCATTCGTCGAAAAGAGCTA 59.333 45.455 12.40 3.30 0.00 3.32
857 1684 8.715190 TGGATATCATTCATCCATTCATGTTT 57.285 30.769 4.83 0.00 45.57 2.83
858 1685 9.810870 TGGATATCATTCATCCATTCATGTTTA 57.189 29.630 4.83 0.00 45.57 2.01
861 1688 9.818270 ATATCATTCATCCATTCATGTTTAGGT 57.182 29.630 0.00 0.00 0.00 3.08
863 1690 8.450578 TCATTCATCCATTCATGTTTAGGTAC 57.549 34.615 0.00 0.00 0.00 3.34
864 1691 8.052141 TCATTCATCCATTCATGTTTAGGTACA 58.948 33.333 0.00 0.00 0.00 2.90
865 1692 8.853126 CATTCATCCATTCATGTTTAGGTACAT 58.147 33.333 0.00 0.00 39.27 2.29
867 1694 9.913310 TTCATCCATTCATGTTTAGGTACATAA 57.087 29.630 0.00 0.00 36.64 1.90
868 1695 9.913310 TCATCCATTCATGTTTAGGTACATAAA 57.087 29.630 8.57 8.57 36.64 1.40
879 1706 9.357161 TGTTTAGGTACATAAAATGTTTCTGGT 57.643 29.630 13.83 0.00 41.63 4.00
887 1714 8.458573 ACATAAAATGTTTCTGGTAGTGTCAA 57.541 30.769 0.00 0.00 41.63 3.18
899 1726 6.485313 TCTGGTAGTGTCAAAACTAAACATGG 59.515 38.462 0.00 0.00 34.50 3.66
933 1760 9.329913 GATTTTGTGAATGTTCATGTACTGTAC 57.670 33.333 10.98 10.98 39.73 2.90
939 1766 6.310224 TGAATGTTCATGTACTGTACACGATG 59.690 38.462 21.84 16.25 42.23 3.84
940 1767 5.128992 TGTTCATGTACTGTACACGATGT 57.871 39.130 21.84 4.08 42.23 3.06
942 1769 5.986741 TGTTCATGTACTGTACACGATGTTT 59.013 36.000 21.84 2.64 42.23 2.83
943 1770 6.144886 TGTTCATGTACTGTACACGATGTTTC 59.855 38.462 21.84 11.57 42.23 2.78
944 1771 6.020971 TCATGTACTGTACACGATGTTTCT 57.979 37.500 21.84 1.20 42.23 2.52
945 1772 5.861787 TCATGTACTGTACACGATGTTTCTG 59.138 40.000 21.84 13.02 42.23 3.02
946 1773 5.441709 TGTACTGTACACGATGTTTCTGA 57.558 39.130 16.26 0.00 32.89 3.27
970 1840 8.350722 TGATAGAAATACTGTAGACGATGTTCC 58.649 37.037 0.00 0.00 0.00 3.62
981 1851 7.105588 TGTAGACGATGTTCCTGTACTAACTA 58.894 38.462 0.00 0.00 0.00 2.24
1031 1919 3.275143 CAACCGTCAATTGGGTAGCATA 58.725 45.455 5.42 0.00 34.85 3.14
1099 1990 2.415997 GCAAGACGACGACGACGAC 61.416 63.158 25.15 18.88 42.66 4.34
1117 2008 1.313812 ACGAGCCGAACGATCTCCTT 61.314 55.000 1.50 0.00 34.70 3.36
1302 2193 2.906354 GACGTGTCCAGCCATTTCTAT 58.094 47.619 0.00 0.00 0.00 1.98
1503 2422 6.448006 AGTCGAGGTAATTAAGATGAATCGG 58.552 40.000 0.00 0.00 0.00 4.18
1544 2472 2.300623 CGTATACGTACGTGTAGGCC 57.699 55.000 30.25 14.77 46.51 5.19
1545 2473 1.397190 CGTATACGTACGTGTAGGCCG 60.397 57.143 30.25 21.62 46.51 6.13
1546 2474 1.069906 GTATACGTACGTGTAGGCCGG 60.070 57.143 30.25 0.00 0.00 6.13
1547 2475 0.463654 ATACGTACGTGTAGGCCGGA 60.464 55.000 30.25 7.71 0.00 5.14
1548 2476 1.089481 TACGTACGTGTAGGCCGGAG 61.089 60.000 30.25 0.00 0.00 4.63
1549 2477 2.401766 CGTACGTGTAGGCCGGAGT 61.402 63.158 5.05 0.00 0.00 3.85
1550 2478 1.089481 CGTACGTGTAGGCCGGAGTA 61.089 60.000 5.05 0.00 0.00 2.59
1554 2482 0.179145 CGTGTAGGCCGGAGTACTTG 60.179 60.000 5.05 0.00 0.00 3.16
1555 2483 0.893447 GTGTAGGCCGGAGTACTTGT 59.107 55.000 5.05 0.00 0.00 3.16
1631 2600 2.040464 ATGGGGAGAGTCGGGCAT 60.040 61.111 0.00 0.00 0.00 4.40
1851 2820 0.885196 GGCTCGGCGAGATATTCTCT 59.115 55.000 38.56 0.00 41.26 3.10
1911 2898 1.448365 CGACATGCTGCAGTGCCTA 60.448 57.895 16.64 0.00 0.00 3.93
1972 2962 2.437359 AGCTTGTCGGGATGCTGC 60.437 61.111 0.00 0.00 34.19 5.25
2013 3003 2.740055 CACACGAGCTCCAGCACC 60.740 66.667 8.47 0.00 45.16 5.01
2124 3114 2.478890 CGGAGACCGCGTGGACTAT 61.479 63.158 24.59 0.00 40.49 2.12
2151 3141 0.329261 TGCAGGAGATGGAAACCCTG 59.671 55.000 0.00 0.00 46.67 4.45
2268 3258 2.753043 GAGTACGAGGTCCCGGCA 60.753 66.667 0.00 0.00 0.00 5.69
2595 3588 2.751166 ACAAGAGGAGGAACATGTCG 57.249 50.000 0.00 0.00 0.00 4.35
2668 3665 5.598416 TCTACCATACCAGTTCATGTGAG 57.402 43.478 0.00 0.00 0.00 3.51
2669 3666 5.023452 TCTACCATACCAGTTCATGTGAGT 58.977 41.667 0.00 0.00 0.00 3.41
2670 3667 3.942829 ACCATACCAGTTCATGTGAGTG 58.057 45.455 0.00 0.00 0.00 3.51
2671 3668 3.582647 ACCATACCAGTTCATGTGAGTGA 59.417 43.478 7.83 0.00 0.00 3.41
2749 3748 1.350193 CACAGCTAAGCTACGTGTGG 58.650 55.000 0.00 0.00 36.40 4.17
2860 3872 0.179073 CGGAGATCCATGGGTCACAC 60.179 60.000 26.87 16.31 35.14 3.82
2912 3928 1.756430 GTCCTTCCTTCTCAATGCCC 58.244 55.000 0.00 0.00 0.00 5.36
2916 3932 2.124151 CCTTCTCAATGCCCGGGG 60.124 66.667 25.28 9.31 0.00 5.73
2919 3935 2.499303 CTTCTCAATGCCCGGGGGTT 62.499 60.000 25.28 0.00 37.65 4.11
2963 3979 0.710567 CGTCGAACATGAGCAGACAC 59.289 55.000 0.00 0.00 32.57 3.67
2967 3983 1.160137 GAACATGAGCAGACACCCAC 58.840 55.000 0.00 0.00 0.00 4.61
2972 3988 0.473755 TGAGCAGACACCCACACAAT 59.526 50.000 0.00 0.00 0.00 2.71
2976 3992 1.956477 GCAGACACCCACACAATCTTT 59.044 47.619 0.00 0.00 0.00 2.52
2981 3997 6.151691 CAGACACCCACACAATCTTTATTTG 58.848 40.000 0.00 0.00 0.00 2.32
2982 3998 6.016360 CAGACACCCACACAATCTTTATTTGA 60.016 38.462 0.00 0.00 0.00 2.69
2983 3999 6.016276 AGACACCCACACAATCTTTATTTGAC 60.016 38.462 0.00 0.00 0.00 3.18
2984 4000 5.596361 ACACCCACACAATCTTTATTTGACA 59.404 36.000 0.00 0.00 0.00 3.58
2985 4001 5.920273 CACCCACACAATCTTTATTTGACAC 59.080 40.000 0.00 0.00 0.00 3.67
2986 4002 5.596361 ACCCACACAATCTTTATTTGACACA 59.404 36.000 0.00 0.00 0.00 3.72
2987 4003 6.151691 CCCACACAATCTTTATTTGACACAG 58.848 40.000 0.00 0.00 0.00 3.66
2988 4004 5.630680 CCACACAATCTTTATTTGACACAGC 59.369 40.000 0.00 0.00 0.00 4.40
2990 4006 6.696583 CACACAATCTTTATTTGACACAGCAA 59.303 34.615 0.00 0.00 0.00 3.91
2991 4007 6.697019 ACACAATCTTTATTTGACACAGCAAC 59.303 34.615 0.00 0.00 0.00 4.17
2993 4009 6.697019 ACAATCTTTATTTGACACAGCAACAC 59.303 34.615 0.00 0.00 0.00 3.32
2994 4010 6.639632 ATCTTTATTTGACACAGCAACACT 57.360 33.333 0.00 0.00 0.00 3.55
3000 7752 2.653726 TGACACAGCAACACTTTCCAT 58.346 42.857 0.00 0.00 0.00 3.41
3007 7759 4.276926 ACAGCAACACTTTCCATCTCTTTC 59.723 41.667 0.00 0.00 0.00 2.62
3014 7766 4.400567 CACTTTCCATCTCTTTCCATTCCC 59.599 45.833 0.00 0.00 0.00 3.97
3017 7769 4.240881 TCCATCTCTTTCCATTCCCTTG 57.759 45.455 0.00 0.00 0.00 3.61
3018 7770 3.851976 TCCATCTCTTTCCATTCCCTTGA 59.148 43.478 0.00 0.00 0.00 3.02
3062 7814 5.998454 TTTTCAAGACAGAAGAGAAGCAG 57.002 39.130 0.00 0.00 0.00 4.24
3105 7857 1.470979 CGTGTTCTTCCGTCCCCTATG 60.471 57.143 0.00 0.00 0.00 2.23
3106 7858 0.539986 TGTTCTTCCGTCCCCTATGC 59.460 55.000 0.00 0.00 0.00 3.14
3258 8010 4.261197 GCGACAAGACCTTTTGAACAAGAT 60.261 41.667 0.00 0.00 0.00 2.40
3599 8352 3.838317 TGCTACCAAAGTGATCTGGTAGT 59.162 43.478 27.16 9.36 44.28 2.73
3600 8353 4.184629 GCTACCAAAGTGATCTGGTAGTG 58.815 47.826 27.16 13.58 44.28 2.74
3601 8354 4.081642 GCTACCAAAGTGATCTGGTAGTGA 60.082 45.833 27.16 6.40 44.28 3.41
3602 8355 4.974645 ACCAAAGTGATCTGGTAGTGAA 57.025 40.909 2.62 0.00 44.28 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.065126 AGCTTATGTGAGTCTTGGGGC 60.065 52.381 0.00 0.00 0.00 5.80
83 85 5.903589 CCTATAAACCAGAAAGGAGGGAGTA 59.096 44.000 0.00 0.00 41.22 2.59
85 87 4.103311 CCCTATAAACCAGAAAGGAGGGAG 59.897 50.000 0.00 0.00 45.41 4.30
86 88 4.045022 CCCTATAAACCAGAAAGGAGGGA 58.955 47.826 0.00 0.00 45.41 4.20
87 89 3.435169 GCCCTATAAACCAGAAAGGAGGG 60.435 52.174 0.00 0.00 45.37 4.30
88 90 3.459969 AGCCCTATAAACCAGAAAGGAGG 59.540 47.826 0.00 0.00 41.22 4.30
90 92 6.619852 AGATAAGCCCTATAAACCAGAAAGGA 59.380 38.462 0.00 0.00 41.22 3.36
91 93 6.842676 AGATAAGCCCTATAAACCAGAAAGG 58.157 40.000 0.00 0.00 45.67 3.11
93 95 7.446106 TGAGATAAGCCCTATAAACCAGAAA 57.554 36.000 0.00 0.00 0.00 2.52
94 96 7.446106 TTGAGATAAGCCCTATAAACCAGAA 57.554 36.000 0.00 0.00 0.00 3.02
96 98 8.697507 ATTTTGAGATAAGCCCTATAAACCAG 57.302 34.615 0.00 0.00 0.00 4.00
97 99 9.487442 AAATTTTGAGATAAGCCCTATAAACCA 57.513 29.630 0.00 0.00 0.00 3.67
131 133 9.434420 CAACCAAATTGAGCCTTATAAAATGAA 57.566 29.630 0.00 0.00 41.23 2.57
132 134 8.592809 ACAACCAAATTGAGCCTTATAAAATGA 58.407 29.630 0.00 0.00 41.23 2.57
133 135 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
134 136 9.791801 AAACAACCAAATTGAGCCTTATAAAAT 57.208 25.926 0.00 0.00 41.23 1.82
135 137 9.620259 AAAACAACCAAATTGAGCCTTATAAAA 57.380 25.926 0.00 0.00 41.23 1.52
136 138 9.267084 GAAAACAACCAAATTGAGCCTTATAAA 57.733 29.630 0.00 0.00 41.23 1.40
137 139 7.875554 GGAAAACAACCAAATTGAGCCTTATAA 59.124 33.333 0.00 0.00 41.23 0.98
138 140 7.015682 TGGAAAACAACCAAATTGAGCCTTATA 59.984 33.333 0.00 0.00 41.23 0.98
139 141 6.183361 TGGAAAACAACCAAATTGAGCCTTAT 60.183 34.615 0.00 0.00 41.23 1.73
140 142 5.129485 TGGAAAACAACCAAATTGAGCCTTA 59.871 36.000 0.00 0.00 41.23 2.69
141 143 4.080638 TGGAAAACAACCAAATTGAGCCTT 60.081 37.500 0.00 0.00 41.23 4.35
142 144 3.454082 TGGAAAACAACCAAATTGAGCCT 59.546 39.130 0.00 0.00 41.23 4.58
143 145 3.802866 TGGAAAACAACCAAATTGAGCC 58.197 40.909 0.00 0.00 41.23 4.70
144 146 5.050159 GTGATGGAAAACAACCAAATTGAGC 60.050 40.000 0.00 0.00 41.23 4.26
145 147 6.047870 TGTGATGGAAAACAACCAAATTGAG 58.952 36.000 0.00 0.00 41.23 3.02
146 148 5.982356 TGTGATGGAAAACAACCAAATTGA 58.018 33.333 0.00 0.00 41.23 2.57
147 149 6.260493 ACATGTGATGGAAAACAACCAAATTG 59.740 34.615 0.00 0.00 40.93 2.32
148 150 6.355747 ACATGTGATGGAAAACAACCAAATT 58.644 32.000 0.00 0.00 40.93 1.82
149 151 5.927819 ACATGTGATGGAAAACAACCAAAT 58.072 33.333 0.00 0.00 40.93 2.32
150 152 5.350504 ACATGTGATGGAAAACAACCAAA 57.649 34.783 0.00 0.00 40.93 3.28
151 153 5.105187 TGAACATGTGATGGAAAACAACCAA 60.105 36.000 0.00 0.00 40.93 3.67
152 154 4.403752 TGAACATGTGATGGAAAACAACCA 59.596 37.500 0.00 0.00 41.83 3.67
153 155 4.942852 TGAACATGTGATGGAAAACAACC 58.057 39.130 0.00 0.00 33.60 3.77
154 156 5.830912 TCTGAACATGTGATGGAAAACAAC 58.169 37.500 0.00 0.00 33.60 3.32
155 157 6.653526 ATCTGAACATGTGATGGAAAACAA 57.346 33.333 0.00 0.00 33.60 2.83
156 158 6.294675 GGAATCTGAACATGTGATGGAAAACA 60.295 38.462 0.00 0.00 33.60 2.83
157 159 6.095377 GGAATCTGAACATGTGATGGAAAAC 58.905 40.000 0.00 0.00 33.60 2.43
158 160 5.774184 TGGAATCTGAACATGTGATGGAAAA 59.226 36.000 0.00 0.00 33.60 2.29
159 161 5.323581 TGGAATCTGAACATGTGATGGAAA 58.676 37.500 0.00 0.00 33.60 3.13
160 162 4.920999 TGGAATCTGAACATGTGATGGAA 58.079 39.130 0.00 0.00 33.60 3.53
161 163 4.573021 TGGAATCTGAACATGTGATGGA 57.427 40.909 0.00 0.00 33.60 3.41
162 164 4.097437 CCTTGGAATCTGAACATGTGATGG 59.903 45.833 0.00 0.00 33.60 3.51
163 165 4.703575 ACCTTGGAATCTGAACATGTGATG 59.296 41.667 0.00 0.00 0.00 3.07
164 166 4.703575 CACCTTGGAATCTGAACATGTGAT 59.296 41.667 0.00 0.00 0.00 3.06
165 167 4.074259 CACCTTGGAATCTGAACATGTGA 58.926 43.478 0.00 0.00 0.00 3.58
166 168 3.366679 GCACCTTGGAATCTGAACATGTG 60.367 47.826 0.00 0.00 0.00 3.21
167 169 2.821969 GCACCTTGGAATCTGAACATGT 59.178 45.455 0.00 0.00 0.00 3.21
168 170 2.821378 TGCACCTTGGAATCTGAACATG 59.179 45.455 0.00 0.00 0.00 3.21
169 171 3.159213 TGCACCTTGGAATCTGAACAT 57.841 42.857 0.00 0.00 0.00 2.71
170 172 2.655090 TGCACCTTGGAATCTGAACA 57.345 45.000 0.00 0.00 0.00 3.18
171 173 5.643379 TTAATGCACCTTGGAATCTGAAC 57.357 39.130 0.00 0.00 0.00 3.18
172 174 6.436847 TGATTTAATGCACCTTGGAATCTGAA 59.563 34.615 0.00 0.00 0.00 3.02
173 175 5.951148 TGATTTAATGCACCTTGGAATCTGA 59.049 36.000 0.00 0.00 0.00 3.27
174 176 6.211587 TGATTTAATGCACCTTGGAATCTG 57.788 37.500 0.00 0.00 0.00 2.90
175 177 7.270047 CAATGATTTAATGCACCTTGGAATCT 58.730 34.615 0.00 0.00 0.00 2.40
176 178 6.018507 GCAATGATTTAATGCACCTTGGAATC 60.019 38.462 0.00 0.00 39.81 2.52
177 179 5.818857 GCAATGATTTAATGCACCTTGGAAT 59.181 36.000 0.00 0.00 39.81 3.01
178 180 5.177326 GCAATGATTTAATGCACCTTGGAA 58.823 37.500 0.00 0.00 39.81 3.53
179 181 4.222366 TGCAATGATTTAATGCACCTTGGA 59.778 37.500 0.00 0.00 44.52 3.53
180 182 4.505808 TGCAATGATTTAATGCACCTTGG 58.494 39.130 0.00 0.00 44.52 3.61
197 199 9.880157 AATTTTCTCTTAATACTTGCATGCAAT 57.120 25.926 31.96 22.79 35.20 3.56
198 200 9.142515 CAATTTTCTCTTAATACTTGCATGCAA 57.857 29.630 30.12 30.12 0.00 4.08
199 201 8.522003 TCAATTTTCTCTTAATACTTGCATGCA 58.478 29.630 18.46 18.46 0.00 3.96
200 202 8.801913 GTCAATTTTCTCTTAATACTTGCATGC 58.198 33.333 11.82 11.82 0.00 4.06
201 203 9.294030 GGTCAATTTTCTCTTAATACTTGCATG 57.706 33.333 0.00 0.00 0.00 4.06
202 204 9.023962 TGGTCAATTTTCTCTTAATACTTGCAT 57.976 29.630 0.00 0.00 0.00 3.96
203 205 8.402798 TGGTCAATTTTCTCTTAATACTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
204 206 9.860898 ATTGGTCAATTTTCTCTTAATACTTGC 57.139 29.630 0.00 0.00 0.00 4.01
206 208 9.860898 GCATTGGTCAATTTTCTCTTAATACTT 57.139 29.630 0.00 0.00 0.00 2.24
207 209 9.023962 TGCATTGGTCAATTTTCTCTTAATACT 57.976 29.630 0.00 0.00 0.00 2.12
208 210 9.807649 ATGCATTGGTCAATTTTCTCTTAATAC 57.192 29.630 0.00 0.00 0.00 1.89
209 211 9.806203 CATGCATTGGTCAATTTTCTCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
210 212 8.316214 ACATGCATTGGTCAATTTTCTCTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
211 213 7.669427 ACATGCATTGGTCAATTTTCTCTTAA 58.331 30.769 0.00 0.00 0.00 1.85
212 214 7.230849 ACATGCATTGGTCAATTTTCTCTTA 57.769 32.000 0.00 0.00 0.00 2.10
213 215 6.105397 ACATGCATTGGTCAATTTTCTCTT 57.895 33.333 0.00 0.00 0.00 2.85
214 216 5.733620 ACATGCATTGGTCAATTTTCTCT 57.266 34.783 0.00 0.00 0.00 3.10
215 217 8.483307 AATTACATGCATTGGTCAATTTTCTC 57.517 30.769 0.00 0.00 0.00 2.87
216 218 8.851541 AAATTACATGCATTGGTCAATTTTCT 57.148 26.923 0.00 0.00 28.85 2.52
219 221 8.614346 GCATAAATTACATGCATTGGTCAATTT 58.386 29.630 16.27 7.43 46.47 1.82
220 222 8.145316 GCATAAATTACATGCATTGGTCAATT 57.855 30.769 16.27 0.00 46.47 2.32
221 223 7.718272 GCATAAATTACATGCATTGGTCAAT 57.282 32.000 16.27 0.00 46.47 2.57
283 285 9.612066 AATTAATGCTCTTGTTTTCCTCAAAAA 57.388 25.926 0.00 0.00 33.17 1.94
284 286 9.044150 CAATTAATGCTCTTGTTTTCCTCAAAA 57.956 29.630 0.00 0.00 0.00 2.44
285 287 7.656948 CCAATTAATGCTCTTGTTTTCCTCAAA 59.343 33.333 0.00 0.00 0.00 2.69
286 288 7.153985 CCAATTAATGCTCTTGTTTTCCTCAA 58.846 34.615 0.00 0.00 0.00 3.02
287 289 6.295236 CCCAATTAATGCTCTTGTTTTCCTCA 60.295 38.462 0.00 0.00 0.00 3.86
288 290 6.101997 CCCAATTAATGCTCTTGTTTTCCTC 58.898 40.000 0.00 0.00 0.00 3.71
289 291 5.543790 ACCCAATTAATGCTCTTGTTTTCCT 59.456 36.000 0.00 0.00 0.00 3.36
290 292 5.639082 CACCCAATTAATGCTCTTGTTTTCC 59.361 40.000 0.00 0.00 0.00 3.13
291 293 5.120674 GCACCCAATTAATGCTCTTGTTTTC 59.879 40.000 0.00 0.00 36.40 2.29
292 294 4.996758 GCACCCAATTAATGCTCTTGTTTT 59.003 37.500 0.00 0.00 36.40 2.43
293 295 4.284234 AGCACCCAATTAATGCTCTTGTTT 59.716 37.500 4.81 0.00 46.68 2.83
294 296 3.834231 AGCACCCAATTAATGCTCTTGTT 59.166 39.130 4.81 0.00 46.68 2.83
295 297 3.434309 AGCACCCAATTAATGCTCTTGT 58.566 40.909 4.81 0.00 46.68 3.16
301 303 3.072944 TGCAAAAGCACCCAATTAATGC 58.927 40.909 0.00 0.60 39.74 3.56
302 304 5.239087 AGTTTGCAAAAGCACCCAATTAATG 59.761 36.000 14.67 0.00 0.00 1.90
303 305 5.375773 AGTTTGCAAAAGCACCCAATTAAT 58.624 33.333 14.67 0.00 0.00 1.40
304 306 4.775236 AGTTTGCAAAAGCACCCAATTAA 58.225 34.783 14.67 0.00 0.00 1.40
305 307 4.414337 AGTTTGCAAAAGCACCCAATTA 57.586 36.364 14.67 0.00 0.00 1.40
306 308 3.280197 AGTTTGCAAAAGCACCCAATT 57.720 38.095 14.67 0.00 0.00 2.32
307 309 3.133721 TGTAGTTTGCAAAAGCACCCAAT 59.866 39.130 14.67 0.00 0.00 3.16
308 310 2.497675 TGTAGTTTGCAAAAGCACCCAA 59.502 40.909 14.67 0.00 0.00 4.12
309 311 2.103373 TGTAGTTTGCAAAAGCACCCA 58.897 42.857 14.67 2.54 0.00 4.51
310 312 2.880963 TGTAGTTTGCAAAAGCACCC 57.119 45.000 14.67 0.00 0.00 4.61
311 313 5.121611 ACTTTTTGTAGTTTGCAAAAGCACC 59.878 36.000 14.67 0.55 43.70 5.01
312 314 6.164408 ACTTTTTGTAGTTTGCAAAAGCAC 57.836 33.333 14.67 12.12 43.70 4.40
313 315 8.485976 AATACTTTTTGTAGTTTGCAAAAGCA 57.514 26.923 14.67 10.19 43.70 3.91
314 316 8.061857 GGAATACTTTTTGTAGTTTGCAAAAGC 58.938 33.333 14.67 7.63 43.70 3.51
315 317 9.092876 TGGAATACTTTTTGTAGTTTGCAAAAG 57.907 29.630 14.67 7.55 43.70 2.27
316 318 8.874816 GTGGAATACTTTTTGTAGTTTGCAAAA 58.125 29.630 14.67 0.00 42.03 2.44
317 319 8.035394 TGTGGAATACTTTTTGTAGTTTGCAAA 58.965 29.630 8.05 8.05 34.24 3.68
318 320 7.489757 GTGTGGAATACTTTTTGTAGTTTGCAA 59.510 33.333 0.00 0.00 34.24 4.08
319 321 6.975772 GTGTGGAATACTTTTTGTAGTTTGCA 59.024 34.615 0.00 0.00 34.24 4.08
320 322 7.200455 AGTGTGGAATACTTTTTGTAGTTTGC 58.800 34.615 0.00 0.00 32.90 3.68
321 323 8.402472 TGAGTGTGGAATACTTTTTGTAGTTTG 58.598 33.333 0.00 0.00 38.91 2.93
322 324 8.403236 GTGAGTGTGGAATACTTTTTGTAGTTT 58.597 33.333 0.00 0.00 38.91 2.66
323 325 7.012989 GGTGAGTGTGGAATACTTTTTGTAGTT 59.987 37.037 0.00 0.00 38.91 2.24
324 326 6.485648 GGTGAGTGTGGAATACTTTTTGTAGT 59.514 38.462 0.00 0.00 38.91 2.73
325 327 6.072673 GGGTGAGTGTGGAATACTTTTTGTAG 60.073 42.308 0.00 0.00 38.91 2.74
326 328 5.766174 GGGTGAGTGTGGAATACTTTTTGTA 59.234 40.000 0.00 0.00 38.91 2.41
327 329 4.583073 GGGTGAGTGTGGAATACTTTTTGT 59.417 41.667 0.00 0.00 38.91 2.83
328 330 4.827284 AGGGTGAGTGTGGAATACTTTTTG 59.173 41.667 0.00 0.00 38.91 2.44
329 331 5.061721 AGGGTGAGTGTGGAATACTTTTT 57.938 39.130 0.00 0.00 38.91 1.94
330 332 4.351111 AGAGGGTGAGTGTGGAATACTTTT 59.649 41.667 0.00 0.00 38.91 2.27
331 333 3.910627 AGAGGGTGAGTGTGGAATACTTT 59.089 43.478 0.00 0.00 38.91 2.66
332 334 3.521727 AGAGGGTGAGTGTGGAATACTT 58.478 45.455 0.00 0.00 38.91 2.24
333 335 3.191888 AGAGGGTGAGTGTGGAATACT 57.808 47.619 0.00 0.00 42.77 2.12
334 336 3.132467 GGTAGAGGGTGAGTGTGGAATAC 59.868 52.174 0.00 0.00 0.00 1.89
335 337 3.012502 AGGTAGAGGGTGAGTGTGGAATA 59.987 47.826 0.00 0.00 0.00 1.75
336 338 2.188817 GGTAGAGGGTGAGTGTGGAAT 58.811 52.381 0.00 0.00 0.00 3.01
337 339 1.149288 AGGTAGAGGGTGAGTGTGGAA 59.851 52.381 0.00 0.00 0.00 3.53
338 340 0.784495 AGGTAGAGGGTGAGTGTGGA 59.216 55.000 0.00 0.00 0.00 4.02
339 341 1.276421 CAAGGTAGAGGGTGAGTGTGG 59.724 57.143 0.00 0.00 0.00 4.17
340 342 1.276421 CCAAGGTAGAGGGTGAGTGTG 59.724 57.143 0.00 0.00 0.00 3.82
341 343 1.132817 ACCAAGGTAGAGGGTGAGTGT 60.133 52.381 0.00 0.00 32.60 3.55
342 344 1.645710 ACCAAGGTAGAGGGTGAGTG 58.354 55.000 0.00 0.00 32.60 3.51
343 345 1.978580 CAACCAAGGTAGAGGGTGAGT 59.021 52.381 0.00 0.00 45.60 3.41
344 346 1.279271 CCAACCAAGGTAGAGGGTGAG 59.721 57.143 0.00 0.00 45.60 3.51
345 347 1.358152 CCAACCAAGGTAGAGGGTGA 58.642 55.000 0.00 0.00 45.60 4.02
346 348 1.064825 ACCAACCAAGGTAGAGGGTG 58.935 55.000 9.27 0.00 40.98 4.61
347 349 1.064825 CACCAACCAAGGTAGAGGGT 58.935 55.000 9.27 5.10 40.77 4.34
348 350 1.279271 CTCACCAACCAAGGTAGAGGG 59.721 57.143 9.27 4.59 40.77 4.30
349 351 1.978580 ACTCACCAACCAAGGTAGAGG 59.021 52.381 13.29 8.85 40.77 3.69
350 352 3.771577 AACTCACCAACCAAGGTAGAG 57.228 47.619 0.00 0.00 40.77 2.43
351 353 4.513406 AAAACTCACCAACCAAGGTAGA 57.487 40.909 0.00 0.00 40.77 2.59
352 354 4.642885 TCAAAAACTCACCAACCAAGGTAG 59.357 41.667 0.00 0.00 40.77 3.18
353 355 4.601084 TCAAAAACTCACCAACCAAGGTA 58.399 39.130 0.00 0.00 40.77 3.08
354 356 3.436243 TCAAAAACTCACCAACCAAGGT 58.564 40.909 0.00 0.00 44.48 3.50
355 357 4.464069 TTCAAAAACTCACCAACCAAGG 57.536 40.909 0.00 0.00 0.00 3.61
356 358 6.105333 TCAATTCAAAAACTCACCAACCAAG 58.895 36.000 0.00 0.00 0.00 3.61
357 359 6.042638 TCAATTCAAAAACTCACCAACCAA 57.957 33.333 0.00 0.00 0.00 3.67
358 360 5.659463 CTCAATTCAAAAACTCACCAACCA 58.341 37.500 0.00 0.00 0.00 3.67
359 361 4.507756 GCTCAATTCAAAAACTCACCAACC 59.492 41.667 0.00 0.00 0.00 3.77
360 362 4.507756 GGCTCAATTCAAAAACTCACCAAC 59.492 41.667 0.00 0.00 0.00 3.77
361 363 4.405358 AGGCTCAATTCAAAAACTCACCAA 59.595 37.500 0.00 0.00 0.00 3.67
362 364 3.960102 AGGCTCAATTCAAAAACTCACCA 59.040 39.130 0.00 0.00 0.00 4.17
363 365 4.590850 AGGCTCAATTCAAAAACTCACC 57.409 40.909 0.00 0.00 0.00 4.02
364 366 9.691362 TTTATAAGGCTCAATTCAAAAACTCAC 57.309 29.630 0.00 0.00 0.00 3.51
365 367 9.691362 GTTTATAAGGCTCAATTCAAAAACTCA 57.309 29.630 0.00 0.00 0.00 3.41
366 368 9.140286 GGTTTATAAGGCTCAATTCAAAAACTC 57.860 33.333 0.00 0.00 0.00 3.01
367 369 7.812669 CGGTTTATAAGGCTCAATTCAAAAACT 59.187 33.333 0.00 0.00 0.00 2.66
368 370 7.062956 CCGGTTTATAAGGCTCAATTCAAAAAC 59.937 37.037 0.00 0.00 0.00 2.43
369 371 7.039644 TCCGGTTTATAAGGCTCAATTCAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
370 372 6.434652 TCCGGTTTATAAGGCTCAATTCAAAA 59.565 34.615 0.00 0.00 0.00 2.44
371 373 5.946972 TCCGGTTTATAAGGCTCAATTCAAA 59.053 36.000 0.00 0.00 0.00 2.69
372 374 5.502079 TCCGGTTTATAAGGCTCAATTCAA 58.498 37.500 0.00 0.00 0.00 2.69
373 375 5.105567 TCCGGTTTATAAGGCTCAATTCA 57.894 39.130 0.00 0.00 0.00 2.57
374 376 6.445357 TTTCCGGTTTATAAGGCTCAATTC 57.555 37.500 0.00 0.00 0.00 2.17
375 377 5.359860 CCTTTCCGGTTTATAAGGCTCAATT 59.640 40.000 0.00 0.00 31.59 2.32
376 378 4.887655 CCTTTCCGGTTTATAAGGCTCAAT 59.112 41.667 0.00 0.00 31.59 2.57
377 379 4.266714 CCTTTCCGGTTTATAAGGCTCAA 58.733 43.478 0.00 0.00 31.59 3.02
378 380 3.371166 CCCTTTCCGGTTTATAAGGCTCA 60.371 47.826 0.00 0.00 36.63 4.26
379 381 3.211865 CCCTTTCCGGTTTATAAGGCTC 58.788 50.000 0.00 0.00 36.63 4.70
380 382 2.092049 CCCCTTTCCGGTTTATAAGGCT 60.092 50.000 0.00 0.00 36.63 4.58
381 383 2.304092 CCCCTTTCCGGTTTATAAGGC 58.696 52.381 0.00 0.00 36.63 4.35
382 384 2.940158 CCCCCTTTCCGGTTTATAAGG 58.060 52.381 0.00 8.06 37.49 2.69
399 401 0.761702 TCCAGGCGTTATACTCCCCC 60.762 60.000 0.00 0.00 0.00 5.40
400 402 0.680061 CTCCAGGCGTTATACTCCCC 59.320 60.000 0.00 0.00 0.00 4.81
401 403 1.614413 CTCTCCAGGCGTTATACTCCC 59.386 57.143 0.00 0.00 0.00 4.30
402 404 2.308690 ACTCTCCAGGCGTTATACTCC 58.691 52.381 0.00 0.00 0.00 3.85
403 405 3.058085 GCTACTCTCCAGGCGTTATACTC 60.058 52.174 0.00 0.00 0.00 2.59
404 406 2.885894 GCTACTCTCCAGGCGTTATACT 59.114 50.000 0.00 0.00 0.00 2.12
405 407 2.621998 TGCTACTCTCCAGGCGTTATAC 59.378 50.000 0.00 0.00 0.00 1.47
439 884 3.225104 ACCGGCCGATTAGTTGTCTATA 58.775 45.455 30.73 0.00 0.00 1.31
440 885 2.037144 ACCGGCCGATTAGTTGTCTAT 58.963 47.619 30.73 0.00 0.00 1.98
500 945 1.615883 GATAGAGGGCTCGCTCATTGA 59.384 52.381 14.93 0.00 34.09 2.57
567 1016 5.116180 TCAACGCTTGGAAACCATAGATAG 58.884 41.667 0.00 0.00 31.53 2.08
569 1018 3.950397 TCAACGCTTGGAAACCATAGAT 58.050 40.909 0.00 0.00 31.53 1.98
571 1020 4.497473 TTTCAACGCTTGGAAACCATAG 57.503 40.909 0.00 0.00 31.53 2.23
580 1029 1.606668 TGGCTAGTTTTCAACGCTTGG 59.393 47.619 0.00 0.00 36.23 3.61
703 1528 1.226435 CTCTGAGCTACACGGCGAC 60.226 63.158 16.62 0.00 37.29 5.19
728 1553 4.631813 GTGCATCAAAGGTCTACTGTTAGG 59.368 45.833 0.00 0.00 0.00 2.69
755 1582 2.754552 GGTGATATGGCAAAGTGAAGCA 59.245 45.455 0.00 0.00 0.00 3.91
768 1595 0.726827 GTGTGTGCACCGGTGATATG 59.273 55.000 38.30 12.15 39.61 1.78
769 1596 0.323302 TGTGTGTGCACCGGTGATAT 59.677 50.000 38.30 0.00 44.65 1.63
770 1597 0.601576 GTGTGTGTGCACCGGTGATA 60.602 55.000 38.30 22.50 44.65 2.15
771 1598 1.891919 GTGTGTGTGCACCGGTGAT 60.892 57.895 38.30 0.00 44.65 3.06
772 1599 2.512745 GTGTGTGTGCACCGGTGA 60.513 61.111 38.30 19.89 44.65 4.02
773 1600 3.935872 CGTGTGTGTGCACCGGTG 61.936 66.667 30.66 30.66 44.65 4.94
776 1603 3.648982 ATGCGTGTGTGTGCACCG 61.649 61.111 15.69 11.27 45.07 4.94
805 1632 7.859377 TGTTTAGGTATATAGCTCTTTTCGACG 59.141 37.037 17.47 0.00 35.39 5.12
857 1684 9.661563 CACTACCAGAAACATTTTATGTACCTA 57.338 33.333 0.00 0.00 44.07 3.08
858 1685 8.161425 ACACTACCAGAAACATTTTATGTACCT 58.839 33.333 0.00 0.00 44.07 3.08
859 1686 8.331730 ACACTACCAGAAACATTTTATGTACC 57.668 34.615 0.00 0.00 44.07 3.34
860 1687 8.995220 TGACACTACCAGAAACATTTTATGTAC 58.005 33.333 0.00 0.00 44.07 2.90
861 1688 9.562408 TTGACACTACCAGAAACATTTTATGTA 57.438 29.630 0.00 0.00 44.07 2.29
863 1690 9.743057 TTTTGACACTACCAGAAACATTTTATG 57.257 29.630 0.00 0.00 0.00 1.90
864 1691 9.744468 GTTTTGACACTACCAGAAACATTTTAT 57.256 29.630 0.00 0.00 0.00 1.40
865 1692 8.962679 AGTTTTGACACTACCAGAAACATTTTA 58.037 29.630 0.00 0.00 31.36 1.52
866 1693 7.836842 AGTTTTGACACTACCAGAAACATTTT 58.163 30.769 0.00 0.00 31.36 1.82
867 1694 7.404671 AGTTTTGACACTACCAGAAACATTT 57.595 32.000 0.00 0.00 31.36 2.32
868 1695 8.514330 TTAGTTTTGACACTACCAGAAACATT 57.486 30.769 0.00 0.00 31.36 2.71
869 1696 8.403236 GTTTAGTTTTGACACTACCAGAAACAT 58.597 33.333 0.00 0.00 31.36 2.71
870 1697 7.390996 TGTTTAGTTTTGACACTACCAGAAACA 59.609 33.333 0.00 0.00 28.94 2.83
871 1698 7.754625 TGTTTAGTTTTGACACTACCAGAAAC 58.245 34.615 0.00 0.00 0.00 2.78
872 1699 7.925043 TGTTTAGTTTTGACACTACCAGAAA 57.075 32.000 0.00 0.00 0.00 2.52
873 1700 7.012894 CCATGTTTAGTTTTGACACTACCAGAA 59.987 37.037 0.00 0.00 0.00 3.02
874 1701 6.485313 CCATGTTTAGTTTTGACACTACCAGA 59.515 38.462 0.00 0.00 0.00 3.86
875 1702 6.485313 TCCATGTTTAGTTTTGACACTACCAG 59.515 38.462 0.00 0.00 0.00 4.00
876 1703 6.358178 TCCATGTTTAGTTTTGACACTACCA 58.642 36.000 0.00 0.00 0.00 3.25
877 1704 6.870971 TCCATGTTTAGTTTTGACACTACC 57.129 37.500 0.00 0.00 0.00 3.18
933 1760 8.412608 ACAGTATTTCTATCAGAAACATCGTG 57.587 34.615 3.58 1.68 45.83 4.35
939 1766 9.953697 ATCGTCTACAGTATTTCTATCAGAAAC 57.046 33.333 3.58 0.00 45.83 2.78
940 1767 9.952188 CATCGTCTACAGTATTTCTATCAGAAA 57.048 33.333 3.97 3.97 46.89 2.52
942 1769 8.678593 ACATCGTCTACAGTATTTCTATCAGA 57.321 34.615 0.00 0.00 0.00 3.27
943 1770 9.388346 GAACATCGTCTACAGTATTTCTATCAG 57.612 37.037 0.00 0.00 0.00 2.90
944 1771 8.350722 GGAACATCGTCTACAGTATTTCTATCA 58.649 37.037 0.00 0.00 0.00 2.15
945 1772 8.569641 AGGAACATCGTCTACAGTATTTCTATC 58.430 37.037 0.00 0.00 0.00 2.08
946 1773 8.353684 CAGGAACATCGTCTACAGTATTTCTAT 58.646 37.037 0.00 0.00 0.00 1.98
981 1851 8.083828 ACTCCATATCTGTATGTGAAAGAACT 57.916 34.615 0.00 0.00 36.72 3.01
1031 1919 0.602562 CACGGCAATTGGAACCACAT 59.397 50.000 7.72 0.00 0.00 3.21
1058 1946 3.169355 TCATGGCCGATATGATGATCG 57.831 47.619 0.00 0.00 46.62 3.69
1084 1975 2.714871 CTCGTCGTCGTCGTCGTCT 61.715 63.158 18.44 0.00 45.27 4.18
1099 1990 0.867753 CAAGGAGATCGTTCGGCTCG 60.868 60.000 8.77 0.00 0.00 5.03
1100 1991 1.148759 GCAAGGAGATCGTTCGGCTC 61.149 60.000 7.20 7.20 0.00 4.70
1101 1992 1.153549 GCAAGGAGATCGTTCGGCT 60.154 57.895 0.00 0.00 0.00 5.52
1302 2193 3.965026 CTCCGAGTCCAGCCCCTGA 62.965 68.421 0.00 0.00 32.44 3.86
1503 2422 4.192317 GGTATATATAGGTTGGCAGCAGC 58.808 47.826 3.14 0.00 41.10 5.25
1540 2468 2.373224 GTACTACAAGTACTCCGGCCT 58.627 52.381 0.00 0.00 45.70 5.19
1541 2469 2.859526 GTACTACAAGTACTCCGGCC 57.140 55.000 9.46 0.00 45.70 6.13
1549 2477 8.951787 ACAGTGAAAAACATGTACTACAAGTA 57.048 30.769 0.00 0.00 29.04 2.24
1550 2478 7.859325 ACAGTGAAAAACATGTACTACAAGT 57.141 32.000 0.00 0.00 30.53 3.16
1631 2600 3.059982 CCTGCTTCAGGTCGACCA 58.940 61.111 35.00 14.29 45.82 4.02
1658 2627 3.785499 CGACGAGCGTGACGAGGA 61.785 66.667 10.10 0.00 34.64 3.71
1851 2820 2.261361 CGCGACCTGACCATGTCA 59.739 61.111 0.00 0.00 40.50 3.58
1911 2898 3.430374 CGTCCTTGTACCTGGAATCGATT 60.430 47.826 11.20 11.20 33.72 3.34
1959 2946 2.265739 GACAGCAGCATCCCGACA 59.734 61.111 0.00 0.00 0.00 4.35
2109 3099 1.384989 CCTCATAGTCCACGCGGTCT 61.385 60.000 12.47 5.45 34.76 3.85
2124 3114 0.979709 CCATCTCCTGCAGGACCTCA 60.980 60.000 32.00 15.62 39.78 3.86
2293 3283 1.002624 GGAGGCGGTTGTGGATCAA 60.003 57.895 0.00 0.00 0.00 2.57
2316 3306 2.284112 TCCGGGTCCCTGTACACC 60.284 66.667 6.29 0.00 0.00 4.16
2356 3346 2.780693 CTCCCCTCTCCCTGGACA 59.219 66.667 0.00 0.00 0.00 4.02
2361 3351 3.756783 CCGTCCTCCCCTCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
2595 3588 2.261361 GTGATTTTGGCGGTGGGC 59.739 61.111 0.00 0.00 42.51 5.36
2668 3665 2.159476 AGCGAACATGCAACATGATCAC 60.159 45.455 14.17 6.21 37.31 3.06
2669 3666 2.086094 AGCGAACATGCAACATGATCA 58.914 42.857 14.17 0.00 37.31 2.92
2670 3667 2.838386 AGCGAACATGCAACATGATC 57.162 45.000 14.17 10.58 37.31 2.92
2671 3668 2.416296 CCAAGCGAACATGCAACATGAT 60.416 45.455 14.17 2.21 37.31 2.45
2749 3748 1.730064 CACAGGCCACATTACGTACAC 59.270 52.381 5.01 0.00 0.00 2.90
2840 3843 0.325203 TGTGACCCATGGATCTCCGA 60.325 55.000 15.22 0.00 39.43 4.55
2841 3844 0.179073 GTGTGACCCATGGATCTCCG 60.179 60.000 15.22 0.00 39.43 4.63
2860 3872 4.813750 AAGCCATGGGAAGAGATTTTTG 57.186 40.909 15.13 0.00 0.00 2.44
2912 3928 0.756442 ATGCATTGGATGAACCCCCG 60.756 55.000 0.00 0.00 38.00 5.73
2916 3932 4.505191 CGAAAATCATGCATTGGATGAACC 59.495 41.667 22.35 11.76 33.59 3.62
2919 3935 3.700539 ACCGAAAATCATGCATTGGATGA 59.299 39.130 21.07 21.07 34.37 2.92
2963 3979 6.083098 TGTGTCAAATAAAGATTGTGTGGG 57.917 37.500 0.00 0.00 0.00 4.61
2967 3983 6.696583 TGTTGCTGTGTCAAATAAAGATTGTG 59.303 34.615 0.00 0.00 0.00 3.33
2972 3988 6.449635 AAGTGTTGCTGTGTCAAATAAAGA 57.550 33.333 0.00 0.00 0.00 2.52
2976 3992 4.642437 TGGAAAGTGTTGCTGTGTCAAATA 59.358 37.500 0.00 0.00 0.00 1.40
2981 3997 2.880890 AGATGGAAAGTGTTGCTGTGTC 59.119 45.455 0.00 0.00 0.00 3.67
2982 3998 2.880890 GAGATGGAAAGTGTTGCTGTGT 59.119 45.455 0.00 0.00 0.00 3.72
2983 3999 3.144506 AGAGATGGAAAGTGTTGCTGTG 58.855 45.455 0.00 0.00 0.00 3.66
2984 4000 3.498774 AGAGATGGAAAGTGTTGCTGT 57.501 42.857 0.00 0.00 0.00 4.40
2985 4001 4.320788 GGAAAGAGATGGAAAGTGTTGCTG 60.321 45.833 0.00 0.00 0.00 4.41
2986 4002 3.823304 GGAAAGAGATGGAAAGTGTTGCT 59.177 43.478 0.00 0.00 0.00 3.91
2987 4003 3.569701 TGGAAAGAGATGGAAAGTGTTGC 59.430 43.478 0.00 0.00 0.00 4.17
2988 4004 5.972107 ATGGAAAGAGATGGAAAGTGTTG 57.028 39.130 0.00 0.00 0.00 3.33
2990 4006 5.012893 GGAATGGAAAGAGATGGAAAGTGT 58.987 41.667 0.00 0.00 0.00 3.55
2991 4007 4.400567 GGGAATGGAAAGAGATGGAAAGTG 59.599 45.833 0.00 0.00 0.00 3.16
2993 4009 4.864726 AGGGAATGGAAAGAGATGGAAAG 58.135 43.478 0.00 0.00 0.00 2.62
2994 4010 4.953781 AGGGAATGGAAAGAGATGGAAA 57.046 40.909 0.00 0.00 0.00 3.13
3000 7752 5.251468 TCTGATTCAAGGGAATGGAAAGAGA 59.749 40.000 0.00 0.00 43.69 3.10
3007 7759 7.886629 TTTTCTATCTGATTCAAGGGAATGG 57.113 36.000 0.00 0.00 43.69 3.16
3014 7766 8.961294 AGTGAGGATTTTCTATCTGATTCAAG 57.039 34.615 0.00 0.00 0.00 3.02
3043 7795 2.289320 GCCTGCTTCTCTTCTGTCTTGA 60.289 50.000 0.00 0.00 0.00 3.02
3062 7814 2.159462 GCTAGTTGCTCAATCTGTTGCC 60.159 50.000 0.00 0.00 38.95 4.52
3105 7857 8.996024 TTAGAAATAAAAGGGTTGCTTTATGC 57.004 30.769 0.00 0.00 43.25 3.14
3537 8290 7.506599 ACCAGATGCATTTTGATTGATATACCA 59.493 33.333 0.00 0.00 0.00 3.25
3599 8352 6.461370 GGTGCATTTCAATACCATATGCTTCA 60.461 38.462 0.00 0.00 41.53 3.02
3600 8353 5.922544 GGTGCATTTCAATACCATATGCTTC 59.077 40.000 0.00 0.00 41.53 3.86
3601 8354 5.599656 AGGTGCATTTCAATACCATATGCTT 59.400 36.000 0.00 0.00 41.53 3.91
3602 8355 5.010314 CAGGTGCATTTCAATACCATATGCT 59.990 40.000 0.00 0.00 41.53 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.