Multiple sequence alignment - TraesCS3D01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G018500 chr3D 100.000 2757 0 0 1 2757 6192060 6194816 0.000000e+00 5092
1 TraesCS3D01G018500 chr3A 92.058 1876 76 20 902 2756 14202638 14204461 0.000000e+00 2571
2 TraesCS3D01G018500 chr3A 91.838 1752 66 25 907 2631 14293857 14292156 0.000000e+00 2372
3 TraesCS3D01G018500 chr3A 93.831 308 18 1 591 898 14366245 14365939 1.930000e-126 462
4 TraesCS3D01G018500 chr3B 93.074 592 36 3 986 1573 7333662 7334252 0.000000e+00 861
5 TraesCS3D01G018500 chr3B 84.518 633 63 20 1165 1777 7334963 7334346 6.570000e-166 593
6 TraesCS3D01G018500 chr7A 91.529 543 37 5 2 537 188380601 188381141 0.000000e+00 739
7 TraesCS3D01G018500 chr1D 84.448 553 69 10 1 537 207799115 207799666 1.880000e-146 529
8 TraesCS3D01G018500 chr6D 84.268 553 66 12 1 537 199643939 199643392 1.130000e-143 520
9 TraesCS3D01G018500 chrUn 96.463 311 5 2 905 1215 404662596 404662900 2.450000e-140 508
10 TraesCS3D01G018500 chr2D 83.755 554 69 14 1 536 613401458 613400908 3.170000e-139 505
11 TraesCS3D01G018500 chr2A 83.607 549 75 12 1 537 282242832 282242287 4.100000e-138 501
12 TraesCS3D01G018500 chr2B 83.364 547 77 10 1 536 776927319 776927862 6.860000e-136 494
13 TraesCS3D01G018500 chr4B 83.303 545 74 10 1 537 244424485 244423950 1.150000e-133 486
14 TraesCS3D01G018500 chr4B 82.967 546 81 11 1 537 100217856 100217314 1.480000e-132 483
15 TraesCS3D01G018500 chr6B 82.940 551 79 11 1 537 395783078 395782529 1.480000e-132 483
16 TraesCS3D01G018500 chr5D 77.389 314 61 8 1172 1480 109578060 109577752 7.850000e-41 178
17 TraesCS3D01G018500 chr5A 75.904 332 69 7 1170 1497 118253569 118253893 2.840000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G018500 chr3D 6192060 6194816 2756 False 5092 5092 100.000 1 2757 1 chr3D.!!$F1 2756
1 TraesCS3D01G018500 chr3A 14202638 14204461 1823 False 2571 2571 92.058 902 2756 1 chr3A.!!$F1 1854
2 TraesCS3D01G018500 chr3A 14292156 14293857 1701 True 2372 2372 91.838 907 2631 1 chr3A.!!$R1 1724
3 TraesCS3D01G018500 chr3B 7333662 7334252 590 False 861 861 93.074 986 1573 1 chr3B.!!$F1 587
4 TraesCS3D01G018500 chr3B 7334346 7334963 617 True 593 593 84.518 1165 1777 1 chr3B.!!$R1 612
5 TraesCS3D01G018500 chr7A 188380601 188381141 540 False 739 739 91.529 2 537 1 chr7A.!!$F1 535
6 TraesCS3D01G018500 chr1D 207799115 207799666 551 False 529 529 84.448 1 537 1 chr1D.!!$F1 536
7 TraesCS3D01G018500 chr6D 199643392 199643939 547 True 520 520 84.268 1 537 1 chr6D.!!$R1 536
8 TraesCS3D01G018500 chr2D 613400908 613401458 550 True 505 505 83.755 1 536 1 chr2D.!!$R1 535
9 TraesCS3D01G018500 chr2A 282242287 282242832 545 True 501 501 83.607 1 537 1 chr2A.!!$R1 536
10 TraesCS3D01G018500 chr2B 776927319 776927862 543 False 494 494 83.364 1 536 1 chr2B.!!$F1 535
11 TraesCS3D01G018500 chr4B 244423950 244424485 535 True 486 486 83.303 1 537 1 chr4B.!!$R2 536
12 TraesCS3D01G018500 chr4B 100217314 100217856 542 True 483 483 82.967 1 537 1 chr4B.!!$R1 536
13 TraesCS3D01G018500 chr6B 395782529 395783078 549 True 483 483 82.940 1 537 1 chr6B.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 610 0.029035 GCATCTTCAGCGCATCTTGG 59.971 55.0 11.47 0.0 0.0 3.61 F
587 621 0.034670 GCATCTTGGGGAGTTGAGCT 60.035 55.0 0.00 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1696 0.448593 GAGTCGAGTTGAGACGGAGG 59.551 60.0 0.0 0.0 42.97 4.30 R
2162 2241 1.410004 AACAGGAGGACACAACTCGA 58.590 50.0 0.0 0.0 35.82 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 7.759465 CGTAAGTAGTTCAGGATCACTTCTTA 58.241 38.462 0.00 0.94 33.91 2.10
58 60 1.941476 CTGCGTCCGTTGCGTAGTTC 61.941 60.000 0.00 0.00 37.31 3.01
135 137 3.439129 GCAACTCCACCTTATAACCACAC 59.561 47.826 0.00 0.00 0.00 3.82
158 160 8.388589 ACACCCTACCTTTAAGCTTAAATAGTT 58.611 33.333 27.35 15.90 32.69 2.24
211 215 5.590663 GTCCTCATGACTCACAGATACTACA 59.409 44.000 0.00 0.00 41.03 2.74
283 288 0.597072 GTGGGAGTTCGACGAAGACT 59.403 55.000 11.25 6.18 0.00 3.24
316 334 8.979574 GTTACTATGTTTATGATCAGTAGTGGC 58.020 37.037 0.09 0.00 0.00 5.01
317 335 7.124573 ACTATGTTTATGATCAGTAGTGGCA 57.875 36.000 0.09 0.00 0.00 4.92
346 365 0.527817 GACGACCGGGACTTAGCATG 60.528 60.000 6.32 0.00 0.00 4.06
349 368 1.615424 ACCGGGACTTAGCATGGGT 60.615 57.895 6.32 0.00 0.00 4.51
397 417 1.419374 CGTAGTCAGACCTTGTGTGC 58.581 55.000 0.00 0.00 0.00 4.57
417 437 7.031372 GTGTGCACTTTGAATGATGTATGAAT 58.969 34.615 19.41 0.00 0.00 2.57
418 438 8.183536 GTGTGCACTTTGAATGATGTATGAATA 58.816 33.333 19.41 0.00 0.00 1.75
419 439 8.738106 TGTGCACTTTGAATGATGTATGAATAA 58.262 29.630 19.41 0.00 0.00 1.40
420 440 9.740239 GTGCACTTTGAATGATGTATGAATAAT 57.260 29.630 10.32 0.00 0.00 1.28
502 536 2.369394 GGATTGTGTGAAGATGACCCC 58.631 52.381 0.00 0.00 0.00 4.95
508 542 1.630369 TGTGAAGATGACCCCTCTTGG 59.370 52.381 0.00 0.00 33.18 3.61
537 571 3.258123 ACAAAAATGCGGTTATGCCTCTT 59.742 39.130 0.00 0.00 34.25 2.85
538 572 4.461081 ACAAAAATGCGGTTATGCCTCTTA 59.539 37.500 0.00 0.00 34.25 2.10
539 573 4.632538 AAAATGCGGTTATGCCTCTTAC 57.367 40.909 0.00 0.00 34.25 2.34
540 574 3.275617 AATGCGGTTATGCCTCTTACA 57.724 42.857 0.00 0.00 34.25 2.41
541 575 2.018542 TGCGGTTATGCCTCTTACAC 57.981 50.000 0.00 0.00 34.25 2.90
542 576 0.928229 GCGGTTATGCCTCTTACACG 59.072 55.000 0.00 0.00 34.25 4.49
543 577 1.738030 GCGGTTATGCCTCTTACACGT 60.738 52.381 0.00 0.00 34.25 4.49
544 578 2.480073 GCGGTTATGCCTCTTACACGTA 60.480 50.000 0.00 0.00 34.25 3.57
545 579 3.369385 CGGTTATGCCTCTTACACGTAG 58.631 50.000 0.00 0.00 34.25 3.51
546 580 3.714391 GGTTATGCCTCTTACACGTAGG 58.286 50.000 0.00 0.00 0.00 3.18
547 581 3.382546 GGTTATGCCTCTTACACGTAGGA 59.617 47.826 5.48 0.00 31.64 2.94
548 582 4.499357 GGTTATGCCTCTTACACGTAGGAG 60.499 50.000 5.48 8.88 38.53 3.69
549 583 2.502142 TGCCTCTTACACGTAGGAGA 57.498 50.000 15.69 0.14 40.47 3.71
550 584 3.014304 TGCCTCTTACACGTAGGAGAT 57.986 47.619 15.69 0.00 40.47 2.75
551 585 4.160642 TGCCTCTTACACGTAGGAGATA 57.839 45.455 15.69 3.95 40.47 1.98
552 586 4.726583 TGCCTCTTACACGTAGGAGATAT 58.273 43.478 15.69 0.00 40.47 1.63
553 587 5.872963 TGCCTCTTACACGTAGGAGATATA 58.127 41.667 15.69 0.00 40.47 0.86
554 588 5.938710 TGCCTCTTACACGTAGGAGATATAG 59.061 44.000 15.69 2.65 40.47 1.31
555 589 5.163733 GCCTCTTACACGTAGGAGATATAGC 60.164 48.000 15.69 7.91 40.47 2.97
556 590 5.354792 CCTCTTACACGTAGGAGATATAGCC 59.645 48.000 15.69 0.00 40.47 3.93
557 591 4.934001 TCTTACACGTAGGAGATATAGCCG 59.066 45.833 0.00 0.00 0.00 5.52
558 592 1.811359 ACACGTAGGAGATATAGCCGC 59.189 52.381 0.00 0.00 0.00 6.53
559 593 1.810755 CACGTAGGAGATATAGCCGCA 59.189 52.381 0.00 0.00 0.00 5.69
560 594 2.423892 CACGTAGGAGATATAGCCGCAT 59.576 50.000 0.00 0.00 0.00 4.73
561 595 2.683867 ACGTAGGAGATATAGCCGCATC 59.316 50.000 0.00 0.00 0.00 3.91
562 596 2.946329 CGTAGGAGATATAGCCGCATCT 59.054 50.000 0.00 0.00 34.19 2.90
563 597 3.378742 CGTAGGAGATATAGCCGCATCTT 59.621 47.826 0.00 0.00 31.63 2.40
564 598 4.496673 CGTAGGAGATATAGCCGCATCTTC 60.497 50.000 0.00 0.00 31.63 2.87
565 599 3.435275 AGGAGATATAGCCGCATCTTCA 58.565 45.455 0.00 0.00 31.63 3.02
566 600 3.446873 AGGAGATATAGCCGCATCTTCAG 59.553 47.826 0.00 0.00 31.63 3.02
567 601 3.186119 GAGATATAGCCGCATCTTCAGC 58.814 50.000 0.00 0.00 31.63 4.26
575 609 3.528594 GCATCTTCAGCGCATCTTG 57.471 52.632 11.47 0.00 0.00 3.02
576 610 0.029035 GCATCTTCAGCGCATCTTGG 59.971 55.000 11.47 0.00 0.00 3.61
577 611 0.661552 CATCTTCAGCGCATCTTGGG 59.338 55.000 11.47 0.00 0.00 4.12
578 612 0.465097 ATCTTCAGCGCATCTTGGGG 60.465 55.000 11.47 0.00 0.00 4.96
579 613 1.078214 CTTCAGCGCATCTTGGGGA 60.078 57.895 11.47 0.00 0.00 4.81
580 614 1.078214 TTCAGCGCATCTTGGGGAG 60.078 57.895 11.47 0.00 0.00 4.30
581 615 1.841302 TTCAGCGCATCTTGGGGAGT 61.841 55.000 11.47 0.00 0.00 3.85
582 616 1.377725 CAGCGCATCTTGGGGAGTT 60.378 57.895 11.47 0.00 0.00 3.01
583 617 1.377725 AGCGCATCTTGGGGAGTTG 60.378 57.895 11.47 0.00 0.00 3.16
584 618 1.377202 GCGCATCTTGGGGAGTTGA 60.377 57.895 0.30 0.00 0.00 3.18
585 619 1.372087 GCGCATCTTGGGGAGTTGAG 61.372 60.000 0.30 0.00 0.00 3.02
586 620 1.372087 CGCATCTTGGGGAGTTGAGC 61.372 60.000 0.00 0.00 0.00 4.26
587 621 0.034670 GCATCTTGGGGAGTTGAGCT 60.035 55.000 0.00 0.00 0.00 4.09
588 622 2.016096 GCATCTTGGGGAGTTGAGCTC 61.016 57.143 6.82 6.82 43.39 4.09
619 653 3.430862 CCCGCCGGTGATGTGTTG 61.431 66.667 18.79 0.00 0.00 3.33
620 654 4.101790 CCGCCGGTGATGTGTTGC 62.102 66.667 18.79 0.00 0.00 4.17
621 655 3.353029 CGCCGGTGATGTGTTGCA 61.353 61.111 10.20 0.00 0.00 4.08
622 656 2.562912 GCCGGTGATGTGTTGCAG 59.437 61.111 1.90 0.00 0.00 4.41
623 657 2.562912 CCGGTGATGTGTTGCAGC 59.437 61.111 0.00 0.00 0.00 5.25
624 658 2.260154 CCGGTGATGTGTTGCAGCA 61.260 57.895 0.00 0.00 41.71 4.41
627 661 3.342909 TGATGTGTTGCAGCACCG 58.657 55.556 27.89 0.00 38.74 4.94
628 662 1.525765 TGATGTGTTGCAGCACCGT 60.526 52.632 27.89 17.90 38.74 4.83
629 663 1.081906 GATGTGTTGCAGCACCGTG 60.082 57.895 27.89 0.00 38.52 4.94
630 664 1.785041 GATGTGTTGCAGCACCGTGT 61.785 55.000 27.89 13.22 38.52 4.49
631 665 2.024588 GTGTTGCAGCACCGTGTG 59.975 61.111 21.81 0.25 36.51 3.82
640 674 2.356913 CACCGTGTGCCGATGTGA 60.357 61.111 0.00 0.00 39.56 3.58
641 675 2.357034 ACCGTGTGCCGATGTGAC 60.357 61.111 0.00 0.00 39.56 3.67
642 676 3.478394 CCGTGTGCCGATGTGACG 61.478 66.667 0.00 0.00 39.56 4.35
649 683 2.741985 CCGATGTGACGGCTGCAA 60.742 61.111 0.50 0.00 46.20 4.08
650 684 2.108514 CCGATGTGACGGCTGCAAT 61.109 57.895 0.50 0.00 46.20 3.56
651 685 1.061411 CGATGTGACGGCTGCAATG 59.939 57.895 0.50 0.00 0.00 2.82
652 686 1.360931 CGATGTGACGGCTGCAATGA 61.361 55.000 0.50 0.00 0.00 2.57
653 687 0.804364 GATGTGACGGCTGCAATGAA 59.196 50.000 0.50 0.00 0.00 2.57
654 688 0.806868 ATGTGACGGCTGCAATGAAG 59.193 50.000 0.50 0.00 0.00 3.02
655 689 1.154150 GTGACGGCTGCAATGAAGC 60.154 57.895 4.20 4.20 40.06 3.86
656 690 1.600356 TGACGGCTGCAATGAAGCA 60.600 52.632 16.09 0.00 42.69 3.91
657 691 0.961857 TGACGGCTGCAATGAAGCAT 60.962 50.000 16.09 1.82 44.68 3.79
658 692 0.524816 GACGGCTGCAATGAAGCATG 60.525 55.000 16.09 9.28 44.68 4.06
659 693 1.226859 CGGCTGCAATGAAGCATGG 60.227 57.895 16.09 0.00 44.68 3.66
660 694 1.895238 GGCTGCAATGAAGCATGGT 59.105 52.632 16.09 0.00 44.68 3.55
661 695 0.179119 GGCTGCAATGAAGCATGGTC 60.179 55.000 16.09 0.00 44.68 4.02
662 696 0.524816 GCTGCAATGAAGCATGGTCG 60.525 55.000 8.65 0.00 44.68 4.79
663 697 1.089112 CTGCAATGAAGCATGGTCGA 58.911 50.000 0.00 0.00 44.68 4.20
664 698 1.674441 CTGCAATGAAGCATGGTCGAT 59.326 47.619 0.00 0.00 44.68 3.59
665 699 1.402613 TGCAATGAAGCATGGTCGATG 59.597 47.619 0.00 0.00 40.11 3.84
666 700 1.402968 GCAATGAAGCATGGTCGATGT 59.597 47.619 0.00 0.00 34.14 3.06
667 701 2.159338 GCAATGAAGCATGGTCGATGTT 60.159 45.455 0.00 0.00 34.14 2.71
668 702 3.431856 CAATGAAGCATGGTCGATGTTG 58.568 45.455 0.00 0.00 34.14 3.33
669 703 1.452110 TGAAGCATGGTCGATGTTGG 58.548 50.000 0.00 0.00 34.14 3.77
670 704 0.734889 GAAGCATGGTCGATGTTGGG 59.265 55.000 0.00 0.00 34.14 4.12
671 705 0.327924 AAGCATGGTCGATGTTGGGA 59.672 50.000 0.00 0.00 34.14 4.37
672 706 0.392998 AGCATGGTCGATGTTGGGAC 60.393 55.000 0.00 0.00 34.14 4.46
673 707 1.705337 GCATGGTCGATGTTGGGACG 61.705 60.000 0.00 0.00 34.14 4.79
674 708 1.089481 CATGGTCGATGTTGGGACGG 61.089 60.000 0.00 0.00 33.99 4.79
675 709 1.261938 ATGGTCGATGTTGGGACGGA 61.262 55.000 0.00 0.00 33.99 4.69
676 710 1.153628 GGTCGATGTTGGGACGGAG 60.154 63.158 0.00 0.00 33.99 4.63
677 711 1.810030 GTCGATGTTGGGACGGAGC 60.810 63.158 0.00 0.00 0.00 4.70
678 712 2.264480 CGATGTTGGGACGGAGCA 59.736 61.111 0.00 0.00 0.00 4.26
679 713 2.100631 CGATGTTGGGACGGAGCAC 61.101 63.158 0.00 0.00 0.00 4.40
680 714 1.745489 GATGTTGGGACGGAGCACC 60.745 63.158 0.00 0.00 0.00 5.01
681 715 2.185310 GATGTTGGGACGGAGCACCT 62.185 60.000 0.00 0.00 0.00 4.00
682 716 2.047179 GTTGGGACGGAGCACCTC 60.047 66.667 0.00 0.00 0.00 3.85
683 717 3.691342 TTGGGACGGAGCACCTCG 61.691 66.667 0.00 0.00 0.00 4.63
686 720 4.148825 GGACGGAGCACCTCGCAT 62.149 66.667 0.00 0.00 46.13 4.73
687 721 2.583593 GACGGAGCACCTCGCATC 60.584 66.667 0.00 0.00 46.13 3.91
688 722 3.356639 GACGGAGCACCTCGCATCA 62.357 63.158 0.00 0.00 46.13 3.07
689 723 2.887568 CGGAGCACCTCGCATCAC 60.888 66.667 0.00 0.00 46.13 3.06
690 724 2.512515 GGAGCACCTCGCATCACC 60.513 66.667 0.00 0.00 46.13 4.02
691 725 2.887568 GAGCACCTCGCATCACCG 60.888 66.667 0.00 0.00 46.13 4.94
718 752 3.248043 GTGTTGGCACTGCTATGGA 57.752 52.632 0.00 0.00 42.13 3.41
719 753 1.089920 GTGTTGGCACTGCTATGGAG 58.910 55.000 0.00 0.00 42.13 3.86
720 754 2.876097 GTGTTGGCACTGCTATGGAGC 61.876 57.143 0.00 0.00 41.51 4.70
730 764 2.510948 CTATGGAGCATCGTCGTGC 58.489 57.895 10.56 10.56 45.38 5.34
736 770 4.420143 GCATCGTCGTGCTACCAT 57.580 55.556 11.08 0.00 41.82 3.55
737 771 2.677971 GCATCGTCGTGCTACCATT 58.322 52.632 11.08 0.00 41.82 3.16
738 772 0.301687 GCATCGTCGTGCTACCATTG 59.698 55.000 11.08 0.00 41.82 2.82
739 773 1.640428 CATCGTCGTGCTACCATTGT 58.360 50.000 0.00 0.00 0.00 2.71
740 774 2.804647 CATCGTCGTGCTACCATTGTA 58.195 47.619 0.00 0.00 0.00 2.41
741 775 2.554806 TCGTCGTGCTACCATTGTAG 57.445 50.000 0.00 0.00 46.05 2.74
742 776 1.814394 TCGTCGTGCTACCATTGTAGT 59.186 47.619 5.90 0.00 45.24 2.73
743 777 2.159476 TCGTCGTGCTACCATTGTAGTC 60.159 50.000 5.90 0.00 45.24 2.59
744 778 2.414957 CGTCGTGCTACCATTGTAGTCA 60.415 50.000 5.90 2.33 45.24 3.41
745 779 3.581755 GTCGTGCTACCATTGTAGTCAA 58.418 45.455 5.90 0.00 45.24 3.18
746 780 3.991773 GTCGTGCTACCATTGTAGTCAAA 59.008 43.478 5.90 0.00 45.24 2.69
747 781 3.991773 TCGTGCTACCATTGTAGTCAAAC 59.008 43.478 5.90 0.34 45.24 2.93
748 782 3.181534 CGTGCTACCATTGTAGTCAAACG 60.182 47.826 5.90 7.29 45.24 3.60
749 783 2.739913 TGCTACCATTGTAGTCAAACGC 59.260 45.455 5.90 0.00 45.24 4.84
750 784 2.095372 GCTACCATTGTAGTCAAACGCC 59.905 50.000 5.90 0.00 45.24 5.68
751 785 1.530323 ACCATTGTAGTCAAACGCCC 58.470 50.000 0.00 0.00 37.11 6.13
752 786 1.202830 ACCATTGTAGTCAAACGCCCA 60.203 47.619 0.00 0.00 37.11 5.36
753 787 1.468520 CCATTGTAGTCAAACGCCCAG 59.531 52.381 0.00 0.00 37.11 4.45
754 788 1.135689 CATTGTAGTCAAACGCCCAGC 60.136 52.381 0.00 0.00 37.11 4.85
755 789 0.107831 TTGTAGTCAAACGCCCAGCT 59.892 50.000 0.00 0.00 0.00 4.24
756 790 0.107831 TGTAGTCAAACGCCCAGCTT 59.892 50.000 0.00 0.00 0.00 3.74
757 791 0.796927 GTAGTCAAACGCCCAGCTTC 59.203 55.000 0.00 0.00 0.00 3.86
758 792 0.669318 TAGTCAAACGCCCAGCTTCG 60.669 55.000 0.00 0.00 0.00 3.79
759 793 3.353836 TCAAACGCCCAGCTTCGC 61.354 61.111 0.00 0.00 0.00 4.70
760 794 4.404654 CAAACGCCCAGCTTCGCC 62.405 66.667 0.00 0.00 0.00 5.54
766 800 2.668212 CCCAGCTTCGCCGACAAA 60.668 61.111 0.00 0.00 0.00 2.83
767 801 2.680913 CCCAGCTTCGCCGACAAAG 61.681 63.158 0.00 0.00 0.00 2.77
768 802 1.961277 CCAGCTTCGCCGACAAAGT 60.961 57.895 0.00 0.00 0.00 2.66
769 803 1.205064 CAGCTTCGCCGACAAAGTG 59.795 57.895 0.00 0.00 0.00 3.16
770 804 1.961277 AGCTTCGCCGACAAAGTGG 60.961 57.895 0.00 0.00 0.00 4.00
771 805 2.251642 GCTTCGCCGACAAAGTGGT 61.252 57.895 0.00 0.00 0.00 4.16
772 806 1.569493 CTTCGCCGACAAAGTGGTG 59.431 57.895 0.00 0.00 37.09 4.17
773 807 2.443957 CTTCGCCGACAAAGTGGTGC 62.444 60.000 0.00 0.00 35.71 5.01
774 808 4.368808 CGCCGACAAAGTGGTGCG 62.369 66.667 0.00 0.00 35.81 5.34
775 809 4.025401 GCCGACAAAGTGGTGCGG 62.025 66.667 0.00 0.00 39.58 5.69
776 810 4.025401 CCGACAAAGTGGTGCGGC 62.025 66.667 0.00 0.00 33.59 6.53
777 811 2.972505 CGACAAAGTGGTGCGGCT 60.973 61.111 0.00 0.00 0.00 5.52
778 812 2.946762 GACAAAGTGGTGCGGCTC 59.053 61.111 0.00 0.00 0.00 4.70
779 813 2.594592 ACAAAGTGGTGCGGCTCC 60.595 61.111 13.96 13.96 0.00 4.70
780 814 2.281761 CAAAGTGGTGCGGCTCCT 60.282 61.111 20.53 0.00 0.00 3.69
781 815 2.281761 AAAGTGGTGCGGCTCCTG 60.282 61.111 20.53 0.00 0.00 3.86
820 854 3.257561 CTTCCGCGGCGACTCATG 61.258 66.667 25.92 5.78 0.00 3.07
821 855 3.989698 CTTCCGCGGCGACTCATGT 62.990 63.158 25.92 0.00 0.00 3.21
822 856 3.583276 TTCCGCGGCGACTCATGTT 62.583 57.895 25.92 0.00 0.00 2.71
823 857 3.853330 CCGCGGCGACTCATGTTG 61.853 66.667 25.92 0.00 0.00 3.33
824 858 3.112075 CGCGGCGACTCATGTTGT 61.112 61.111 19.16 0.00 0.00 3.32
825 859 2.667318 CGCGGCGACTCATGTTGTT 61.667 57.895 19.16 0.00 0.00 2.83
826 860 1.154413 GCGGCGACTCATGTTGTTG 60.154 57.895 12.98 0.00 0.00 3.33
827 861 1.154413 CGGCGACTCATGTTGTTGC 60.154 57.895 18.75 18.75 42.43 4.17
828 862 1.568612 CGGCGACTCATGTTGTTGCT 61.569 55.000 22.93 0.00 42.68 3.91
829 863 0.593128 GGCGACTCATGTTGTTGCTT 59.407 50.000 22.93 0.00 42.68 3.91
830 864 1.400242 GGCGACTCATGTTGTTGCTTC 60.400 52.381 22.93 11.27 42.68 3.86
831 865 1.722751 GCGACTCATGTTGTTGCTTCG 60.723 52.381 19.31 9.45 40.59 3.79
832 866 1.722751 CGACTCATGTTGTTGCTTCGC 60.723 52.381 0.00 0.00 0.00 4.70
833 867 0.593128 ACTCATGTTGTTGCTTCGCC 59.407 50.000 0.00 0.00 0.00 5.54
834 868 0.453282 CTCATGTTGTTGCTTCGCCG 60.453 55.000 0.00 0.00 0.00 6.46
835 869 1.163420 TCATGTTGTTGCTTCGCCGT 61.163 50.000 0.00 0.00 0.00 5.68
836 870 0.515127 CATGTTGTTGCTTCGCCGTA 59.485 50.000 0.00 0.00 0.00 4.02
837 871 1.130373 CATGTTGTTGCTTCGCCGTAT 59.870 47.619 0.00 0.00 0.00 3.06
838 872 0.515127 TGTTGTTGCTTCGCCGTATG 59.485 50.000 0.00 0.00 0.00 2.39
839 873 0.515564 GTTGTTGCTTCGCCGTATGT 59.484 50.000 0.00 0.00 0.00 2.29
840 874 1.069500 GTTGTTGCTTCGCCGTATGTT 60.069 47.619 0.00 0.00 0.00 2.71
841 875 0.793861 TGTTGCTTCGCCGTATGTTC 59.206 50.000 0.00 0.00 0.00 3.18
842 876 0.793861 GTTGCTTCGCCGTATGTTCA 59.206 50.000 0.00 0.00 0.00 3.18
843 877 0.793861 TTGCTTCGCCGTATGTTCAC 59.206 50.000 0.00 0.00 0.00 3.18
844 878 1.017177 TGCTTCGCCGTATGTTCACC 61.017 55.000 0.00 0.00 0.00 4.02
845 879 1.702491 GCTTCGCCGTATGTTCACCC 61.702 60.000 0.00 0.00 0.00 4.61
846 880 1.418342 CTTCGCCGTATGTTCACCCG 61.418 60.000 0.00 0.00 0.00 5.28
847 881 1.875420 TTCGCCGTATGTTCACCCGA 61.875 55.000 0.00 0.00 0.00 5.14
848 882 1.227147 CGCCGTATGTTCACCCGAT 60.227 57.895 0.00 0.00 0.00 4.18
849 883 1.213094 CGCCGTATGTTCACCCGATC 61.213 60.000 0.00 0.00 0.00 3.69
850 884 0.878961 GCCGTATGTTCACCCGATCC 60.879 60.000 0.00 0.00 0.00 3.36
851 885 0.462375 CCGTATGTTCACCCGATCCA 59.538 55.000 0.00 0.00 0.00 3.41
852 886 1.134640 CCGTATGTTCACCCGATCCAA 60.135 52.381 0.00 0.00 0.00 3.53
853 887 2.484770 CCGTATGTTCACCCGATCCAAT 60.485 50.000 0.00 0.00 0.00 3.16
854 888 2.543848 CGTATGTTCACCCGATCCAATG 59.456 50.000 0.00 0.00 0.00 2.82
855 889 2.057137 ATGTTCACCCGATCCAATGG 57.943 50.000 0.00 0.00 0.00 3.16
856 890 0.679640 TGTTCACCCGATCCAATGGC 60.680 55.000 0.00 0.00 0.00 4.40
857 891 0.394352 GTTCACCCGATCCAATGGCT 60.394 55.000 0.00 0.00 0.00 4.75
858 892 0.394216 TTCACCCGATCCAATGGCTG 60.394 55.000 0.00 0.00 0.00 4.85
859 893 2.124151 ACCCGATCCAATGGCTGC 60.124 61.111 0.00 0.00 0.00 5.25
860 894 3.282157 CCCGATCCAATGGCTGCG 61.282 66.667 0.00 0.00 0.00 5.18
861 895 2.203056 CCGATCCAATGGCTGCGA 60.203 61.111 9.19 0.00 0.00 5.10
862 896 2.249535 CCGATCCAATGGCTGCGAG 61.250 63.158 9.19 0.00 0.00 5.03
863 897 2.249535 CGATCCAATGGCTGCGAGG 61.250 63.158 0.00 0.00 0.00 4.63
864 898 1.895707 GATCCAATGGCTGCGAGGG 60.896 63.158 0.00 0.00 0.00 4.30
865 899 2.329539 GATCCAATGGCTGCGAGGGA 62.330 60.000 9.59 9.59 0.00 4.20
866 900 1.925285 ATCCAATGGCTGCGAGGGAA 61.925 55.000 10.88 0.00 0.00 3.97
867 901 2.117156 CCAATGGCTGCGAGGGAAG 61.117 63.158 0.00 0.00 0.00 3.46
868 902 2.117156 CAATGGCTGCGAGGGAAGG 61.117 63.158 0.00 0.00 0.00 3.46
869 903 2.300967 AATGGCTGCGAGGGAAGGA 61.301 57.895 0.00 0.00 0.00 3.36
870 904 1.639635 AATGGCTGCGAGGGAAGGAT 61.640 55.000 0.00 0.00 0.00 3.24
871 905 2.049627 ATGGCTGCGAGGGAAGGATC 62.050 60.000 0.00 0.00 0.00 3.36
872 906 2.110006 GCTGCGAGGGAAGGATCC 59.890 66.667 2.48 2.48 45.77 3.36
880 914 4.237207 GGAAGGATCCGACGGCCC 62.237 72.222 9.66 12.86 35.59 5.80
881 915 3.467226 GAAGGATCCGACGGCCCA 61.467 66.667 21.78 2.32 0.00 5.36
882 916 2.768344 AAGGATCCGACGGCCCAT 60.768 61.111 21.78 11.21 0.00 4.00
883 917 2.996168 GAAGGATCCGACGGCCCATG 62.996 65.000 21.78 0.00 0.00 3.66
884 918 3.546543 GGATCCGACGGCCCATGA 61.547 66.667 9.66 0.00 0.00 3.07
885 919 2.280186 GATCCGACGGCCCATGAC 60.280 66.667 9.66 0.00 0.00 3.06
886 920 3.809374 GATCCGACGGCCCATGACC 62.809 68.421 9.66 0.00 0.00 4.02
893 927 3.399181 GGCCCATGACCCGACTGA 61.399 66.667 0.00 0.00 0.00 3.41
894 928 2.746375 GGCCCATGACCCGACTGAT 61.746 63.158 0.00 0.00 0.00 2.90
895 929 1.224592 GCCCATGACCCGACTGATT 59.775 57.895 0.00 0.00 0.00 2.57
896 930 0.394352 GCCCATGACCCGACTGATTT 60.394 55.000 0.00 0.00 0.00 2.17
897 931 1.668419 CCCATGACCCGACTGATTTC 58.332 55.000 0.00 0.00 0.00 2.17
898 932 1.290203 CCATGACCCGACTGATTTCG 58.710 55.000 0.00 0.00 38.80 3.46
899 933 0.652592 CATGACCCGACTGATTTCGC 59.347 55.000 0.00 0.00 37.70 4.70
900 934 0.462047 ATGACCCGACTGATTTCGCC 60.462 55.000 0.00 0.00 37.70 5.54
903 937 0.744414 ACCCGACTGATTTCGCCATG 60.744 55.000 0.00 0.00 37.70 3.66
954 988 4.713792 ACCAATATAAGGAGGAGCAAGG 57.286 45.455 1.37 0.00 0.00 3.61
970 1005 2.041922 GGCCCCTCCCCAAAATCC 60.042 66.667 0.00 0.00 0.00 3.01
1037 1075 2.341257 GCGAGTTGAGCAGAAATCAGA 58.659 47.619 0.00 0.00 34.19 3.27
1158 1196 1.758906 GTTCCCGAGGAGAGGAGGG 60.759 68.421 0.00 0.00 45.10 4.30
1369 1407 1.342819 GAGCATCTGGATAGGTTCGCT 59.657 52.381 0.00 0.00 0.00 4.93
1626 1693 7.330900 TCTGGCAGTTACTCTTATGTAGTAC 57.669 40.000 15.27 0.00 0.00 2.73
1628 1695 7.282675 TCTGGCAGTTACTCTTATGTAGTACTC 59.717 40.741 15.27 0.00 0.00 2.59
1629 1696 6.320672 TGGCAGTTACTCTTATGTAGTACTCC 59.679 42.308 0.00 0.00 0.00 3.85
1630 1697 6.238981 GGCAGTTACTCTTATGTAGTACTCCC 60.239 46.154 0.00 0.00 0.00 4.30
1631 1698 6.546772 GCAGTTACTCTTATGTAGTACTCCCT 59.453 42.308 0.00 0.00 0.00 4.20
1632 1699 7.255208 GCAGTTACTCTTATGTAGTACTCCCTC 60.255 44.444 0.00 0.00 0.00 4.30
1633 1700 7.229106 CAGTTACTCTTATGTAGTACTCCCTCC 59.771 44.444 0.00 0.00 0.00 4.30
1634 1701 4.716794 ACTCTTATGTAGTACTCCCTCCG 58.283 47.826 0.00 0.00 0.00 4.63
1635 1702 4.165758 ACTCTTATGTAGTACTCCCTCCGT 59.834 45.833 0.00 0.00 0.00 4.69
1636 1703 4.712476 TCTTATGTAGTACTCCCTCCGTC 58.288 47.826 0.00 0.00 0.00 4.79
1637 1704 4.411540 TCTTATGTAGTACTCCCTCCGTCT 59.588 45.833 0.00 0.00 0.00 4.18
1638 1705 2.706339 TGTAGTACTCCCTCCGTCTC 57.294 55.000 0.00 0.00 0.00 3.36
1639 1706 1.911357 TGTAGTACTCCCTCCGTCTCA 59.089 52.381 0.00 0.00 0.00 3.27
1640 1707 2.306805 TGTAGTACTCCCTCCGTCTCAA 59.693 50.000 0.00 0.00 0.00 3.02
1641 1708 1.836802 AGTACTCCCTCCGTCTCAAC 58.163 55.000 0.00 0.00 0.00 3.18
1642 1709 1.355043 AGTACTCCCTCCGTCTCAACT 59.645 52.381 0.00 0.00 0.00 3.16
1643 1710 1.744522 GTACTCCCTCCGTCTCAACTC 59.255 57.143 0.00 0.00 0.00 3.01
1644 1711 0.961358 ACTCCCTCCGTCTCAACTCG 60.961 60.000 0.00 0.00 0.00 4.18
1645 1712 0.677098 CTCCCTCCGTCTCAACTCGA 60.677 60.000 0.00 0.00 0.00 4.04
1646 1713 0.959372 TCCCTCCGTCTCAACTCGAC 60.959 60.000 0.00 0.00 0.00 4.20
1647 1714 0.961358 CCCTCCGTCTCAACTCGACT 60.961 60.000 0.00 0.00 0.00 4.18
1671 1744 8.052748 ACTCTAGTATTATGAGGGATCTAGCTG 58.947 40.741 0.00 0.00 32.58 4.24
1763 1838 3.657015 TGCAATTTGCCGATTCAGAAA 57.343 38.095 18.27 0.00 44.23 2.52
1764 1839 3.577667 TGCAATTTGCCGATTCAGAAAG 58.422 40.909 18.27 0.00 44.23 2.62
1765 1840 3.255395 TGCAATTTGCCGATTCAGAAAGA 59.745 39.130 18.27 0.00 44.23 2.52
1766 1841 4.236935 GCAATTTGCCGATTCAGAAAGAA 58.763 39.130 10.34 0.00 37.42 2.52
1767 1842 4.685628 GCAATTTGCCGATTCAGAAAGAAA 59.314 37.500 10.34 0.00 37.29 2.52
1768 1843 5.164022 GCAATTTGCCGATTCAGAAAGAAAG 60.164 40.000 10.34 0.00 37.29 2.62
1769 1844 5.964958 ATTTGCCGATTCAGAAAGAAAGA 57.035 34.783 0.00 0.00 40.22 2.52
1770 1845 5.766150 TTTGCCGATTCAGAAAGAAAGAA 57.234 34.783 0.00 0.00 40.22 2.52
1855 1930 5.705905 AGTTTTGTAGCTTACTGTGGGAATC 59.294 40.000 0.00 0.00 0.00 2.52
1856 1931 5.499004 TTTGTAGCTTACTGTGGGAATCT 57.501 39.130 0.00 0.00 0.00 2.40
2068 2147 2.470983 AAACAGAGAGGAGCTTCAGC 57.529 50.000 0.00 0.00 42.49 4.26
2088 2167 2.670509 GCCAGAAGCTCAGCAATGTTTC 60.671 50.000 0.00 0.00 38.99 2.78
2160 2239 8.783093 TCATTTTCTTGTTATAATAGGCATCGG 58.217 33.333 0.00 0.00 0.00 4.18
2161 2240 8.783093 CATTTTCTTGTTATAATAGGCATCGGA 58.217 33.333 0.00 0.00 0.00 4.55
2162 2241 8.918202 TTTTCTTGTTATAATAGGCATCGGAT 57.082 30.769 0.00 0.00 0.00 4.18
2163 2242 8.547967 TTTCTTGTTATAATAGGCATCGGATC 57.452 34.615 0.00 0.00 0.00 3.36
2231 2312 5.771469 CAACAATACTCCAGTGAATGCAAA 58.229 37.500 0.00 0.00 0.00 3.68
2407 2492 3.569701 GTCTCTTTTGAGGACATTGGCAA 59.430 43.478 0.68 0.68 46.22 4.52
2631 2735 2.856222 AGGTTTCTGTTCCAAGCTCTG 58.144 47.619 0.00 0.00 0.00 3.35
2633 2737 1.882623 GTTTCTGTTCCAAGCTCTGGG 59.117 52.381 12.99 4.27 46.44 4.45
2707 2811 5.683876 ACTATAGGCATGGATGTGGATAC 57.316 43.478 4.43 0.00 0.00 2.24
2715 2819 0.398318 GGATGTGGATACTGGGGCTC 59.602 60.000 0.00 0.00 37.61 4.70
2719 2823 0.462047 GTGGATACTGGGGCTCGTTG 60.462 60.000 0.00 0.00 37.61 4.10
2748 2852 5.163141 TGCTACTGCTTTTTAGGGCCATATA 60.163 40.000 6.18 0.00 40.48 0.86
2752 2856 6.906848 ACTGCTTTTTAGGGCCATATACTTA 58.093 36.000 6.18 0.00 0.00 2.24
2753 2857 7.526918 ACTGCTTTTTAGGGCCATATACTTAT 58.473 34.615 6.18 0.00 0.00 1.73
2755 2859 8.177119 TGCTTTTTAGGGCCATATACTTATTG 57.823 34.615 6.18 0.00 0.00 1.90
2756 2860 7.090808 GCTTTTTAGGGCCATATACTTATTGC 58.909 38.462 6.18 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 2.159170 GGACGCAGAGCTAGAAGTGATT 60.159 50.000 0.00 0.00 0.00 2.57
58 60 5.821516 ACGAGTACAAGAGTAAGATGAGG 57.178 43.478 0.00 0.00 30.67 3.86
158 160 1.804151 CTCAAAACCCGCGAGATCAAA 59.196 47.619 8.23 0.00 0.00 2.69
211 215 0.179113 CGGCACCTGCAACTGTTTTT 60.179 50.000 0.00 0.00 44.36 1.94
283 288 6.824196 TGATCATAAACATAGTAACGGCCAAA 59.176 34.615 2.24 0.00 0.00 3.28
346 365 6.210584 TCCAAATGAAAAGAAGATAACCACCC 59.789 38.462 0.00 0.00 0.00 4.61
349 368 7.148086 CGGATCCAAATGAAAAGAAGATAACCA 60.148 37.037 13.41 0.00 0.00 3.67
385 405 2.418368 TCAAAGTGCACACAAGGTCT 57.582 45.000 21.04 0.00 0.00 3.85
417 437 5.618863 GCCACGTCACACAATGATCAAATTA 60.619 40.000 0.00 0.00 40.28 1.40
418 438 4.797471 CCACGTCACACAATGATCAAATT 58.203 39.130 0.00 0.00 40.28 1.82
419 439 3.366273 GCCACGTCACACAATGATCAAAT 60.366 43.478 0.00 0.00 40.28 2.32
420 440 2.031245 GCCACGTCACACAATGATCAAA 60.031 45.455 0.00 0.00 40.28 2.69
424 444 0.320334 TCGCCACGTCACACAATGAT 60.320 50.000 0.00 0.00 40.28 2.45
502 536 6.183360 ACCGCATTTTTGTATAATCCCAAGAG 60.183 38.462 0.00 0.00 0.00 2.85
508 542 6.364976 GGCATAACCGCATTTTTGTATAATCC 59.635 38.462 0.00 0.00 0.00 3.01
517 551 4.461081 TGTAAGAGGCATAACCGCATTTTT 59.539 37.500 0.00 0.00 46.52 1.94
537 571 3.005554 GCGGCTATATCTCCTACGTGTA 58.994 50.000 0.00 0.00 0.00 2.90
538 572 1.811359 GCGGCTATATCTCCTACGTGT 59.189 52.381 0.00 0.00 0.00 4.49
539 573 1.810755 TGCGGCTATATCTCCTACGTG 59.189 52.381 0.00 0.00 0.00 4.49
540 574 2.195741 TGCGGCTATATCTCCTACGT 57.804 50.000 0.00 0.00 0.00 3.57
541 575 2.946329 AGATGCGGCTATATCTCCTACG 59.054 50.000 0.00 0.00 0.00 3.51
542 576 4.399618 TGAAGATGCGGCTATATCTCCTAC 59.600 45.833 0.00 0.00 32.71 3.18
543 577 4.600062 TGAAGATGCGGCTATATCTCCTA 58.400 43.478 0.00 0.00 32.71 2.94
544 578 3.435275 TGAAGATGCGGCTATATCTCCT 58.565 45.455 0.00 0.00 32.71 3.69
545 579 3.779759 CTGAAGATGCGGCTATATCTCC 58.220 50.000 0.00 0.00 32.71 3.71
546 580 3.186119 GCTGAAGATGCGGCTATATCTC 58.814 50.000 0.00 0.00 37.20 2.75
547 581 3.244033 GCTGAAGATGCGGCTATATCT 57.756 47.619 0.00 0.00 37.20 1.98
557 591 0.029035 CCAAGATGCGCTGAAGATGC 59.971 55.000 9.73 0.00 0.00 3.91
558 592 0.661552 CCCAAGATGCGCTGAAGATG 59.338 55.000 9.73 0.00 0.00 2.90
559 593 0.465097 CCCCAAGATGCGCTGAAGAT 60.465 55.000 9.73 0.00 0.00 2.40
560 594 1.078214 CCCCAAGATGCGCTGAAGA 60.078 57.895 9.73 0.00 0.00 2.87
561 595 1.078214 TCCCCAAGATGCGCTGAAG 60.078 57.895 9.73 0.00 0.00 3.02
562 596 1.078214 CTCCCCAAGATGCGCTGAA 60.078 57.895 9.73 0.00 0.00 3.02
563 597 1.841302 AACTCCCCAAGATGCGCTGA 61.841 55.000 9.73 0.00 0.00 4.26
564 598 1.377725 AACTCCCCAAGATGCGCTG 60.378 57.895 9.73 0.00 0.00 5.18
565 599 1.377725 CAACTCCCCAAGATGCGCT 60.378 57.895 9.73 0.00 0.00 5.92
566 600 1.372087 CTCAACTCCCCAAGATGCGC 61.372 60.000 0.00 0.00 0.00 6.09
567 601 1.372087 GCTCAACTCCCCAAGATGCG 61.372 60.000 0.00 0.00 0.00 4.73
568 602 0.034670 AGCTCAACTCCCCAAGATGC 60.035 55.000 0.00 0.00 0.00 3.91
569 603 2.035530 GAGCTCAACTCCCCAAGATG 57.964 55.000 9.40 0.00 39.75 2.90
602 636 3.430862 CAACACATCACCGGCGGG 61.431 66.667 31.78 19.08 40.11 6.13
603 637 4.101790 GCAACACATCACCGGCGG 62.102 66.667 27.06 27.06 0.00 6.13
604 638 3.313007 CTGCAACACATCACCGGCG 62.313 63.158 0.00 0.00 0.00 6.46
605 639 2.562912 CTGCAACACATCACCGGC 59.437 61.111 0.00 0.00 0.00 6.13
606 640 2.260154 TGCTGCAACACATCACCGG 61.260 57.895 0.00 0.00 0.00 5.28
607 641 1.081906 GTGCTGCAACACATCACCG 60.082 57.895 15.25 0.00 39.08 4.94
608 642 4.950744 GTGCTGCAACACATCACC 57.049 55.556 15.25 0.00 39.08 4.02
609 643 1.081906 CGGTGCTGCAACACATCAC 60.082 57.895 21.04 3.62 43.26 3.06
610 644 1.525765 ACGGTGCTGCAACACATCA 60.526 52.632 21.04 0.00 42.55 3.07
611 645 1.081906 CACGGTGCTGCAACACATC 60.082 57.895 21.04 4.66 42.55 3.06
612 646 1.823470 ACACGGTGCTGCAACACAT 60.823 52.632 21.04 6.51 42.55 3.21
613 647 2.437537 ACACGGTGCTGCAACACA 60.438 55.556 21.04 0.94 42.55 3.72
614 648 2.024588 CACACGGTGCTGCAACAC 59.975 61.111 18.95 11.87 39.94 3.32
624 658 2.357034 GTCACATCGGCACACGGT 60.357 61.111 0.00 0.00 44.45 4.83
625 659 3.478394 CGTCACATCGGCACACGG 61.478 66.667 0.00 0.00 44.45 4.94
626 660 3.478394 CCGTCACATCGGCACACG 61.478 66.667 0.00 0.00 43.96 4.49
633 667 1.061411 CATTGCAGCCGTCACATCG 59.939 57.895 0.00 0.00 0.00 3.84
634 668 0.804364 TTCATTGCAGCCGTCACATC 59.196 50.000 0.00 0.00 0.00 3.06
635 669 0.806868 CTTCATTGCAGCCGTCACAT 59.193 50.000 0.00 0.00 0.00 3.21
636 670 1.855213 GCTTCATTGCAGCCGTCACA 61.855 55.000 0.00 0.00 0.00 3.58
637 671 1.154150 GCTTCATTGCAGCCGTCAC 60.154 57.895 0.00 0.00 0.00 3.67
638 672 0.961857 ATGCTTCATTGCAGCCGTCA 60.962 50.000 5.84 0.00 46.71 4.35
639 673 0.524816 CATGCTTCATTGCAGCCGTC 60.525 55.000 5.84 0.00 46.71 4.79
640 674 1.509463 CATGCTTCATTGCAGCCGT 59.491 52.632 5.84 0.00 46.71 5.68
641 675 1.226859 CCATGCTTCATTGCAGCCG 60.227 57.895 5.84 0.00 46.71 5.52
642 676 0.179119 GACCATGCTTCATTGCAGCC 60.179 55.000 5.84 0.00 46.71 4.85
643 677 0.524816 CGACCATGCTTCATTGCAGC 60.525 55.000 0.99 0.99 46.71 5.25
644 678 1.089112 TCGACCATGCTTCATTGCAG 58.911 50.000 0.00 0.00 46.71 4.41
646 680 1.402968 ACATCGACCATGCTTCATTGC 59.597 47.619 0.00 0.00 35.65 3.56
647 681 3.431856 CAACATCGACCATGCTTCATTG 58.568 45.455 0.00 0.00 35.65 2.82
648 682 2.424601 CCAACATCGACCATGCTTCATT 59.575 45.455 0.00 0.00 35.65 2.57
649 683 2.019249 CCAACATCGACCATGCTTCAT 58.981 47.619 0.00 0.00 35.65 2.57
650 684 1.452110 CCAACATCGACCATGCTTCA 58.548 50.000 0.00 0.00 35.65 3.02
651 685 0.734889 CCCAACATCGACCATGCTTC 59.265 55.000 0.00 0.00 35.65 3.86
652 686 0.327924 TCCCAACATCGACCATGCTT 59.672 50.000 0.00 0.00 35.65 3.91
653 687 0.392998 GTCCCAACATCGACCATGCT 60.393 55.000 0.00 0.00 35.65 3.79
654 688 1.705337 CGTCCCAACATCGACCATGC 61.705 60.000 0.00 0.00 35.65 4.06
655 689 1.089481 CCGTCCCAACATCGACCATG 61.089 60.000 0.00 0.00 38.64 3.66
656 690 1.220749 CCGTCCCAACATCGACCAT 59.779 57.895 0.00 0.00 0.00 3.55
657 691 1.884075 CTCCGTCCCAACATCGACCA 61.884 60.000 0.00 0.00 0.00 4.02
658 692 1.153628 CTCCGTCCCAACATCGACC 60.154 63.158 0.00 0.00 0.00 4.79
659 693 1.810030 GCTCCGTCCCAACATCGAC 60.810 63.158 0.00 0.00 0.00 4.20
660 694 2.279810 TGCTCCGTCCCAACATCGA 61.280 57.895 0.00 0.00 0.00 3.59
661 695 2.100631 GTGCTCCGTCCCAACATCG 61.101 63.158 0.00 0.00 0.00 3.84
662 696 1.745489 GGTGCTCCGTCCCAACATC 60.745 63.158 0.00 0.00 0.00 3.06
663 697 2.185310 GAGGTGCTCCGTCCCAACAT 62.185 60.000 0.00 0.00 39.05 2.71
664 698 2.847234 AGGTGCTCCGTCCCAACA 60.847 61.111 0.00 0.00 39.05 3.33
665 699 2.047179 GAGGTGCTCCGTCCCAAC 60.047 66.667 0.00 0.00 39.05 3.77
666 700 3.691342 CGAGGTGCTCCGTCCCAA 61.691 66.667 0.00 0.00 39.05 4.12
669 703 4.148825 ATGCGAGGTGCTCCGTCC 62.149 66.667 0.00 0.00 46.63 4.79
670 704 2.583593 GATGCGAGGTGCTCCGTC 60.584 66.667 0.00 0.00 46.63 4.79
671 705 3.381983 TGATGCGAGGTGCTCCGT 61.382 61.111 0.00 0.00 46.63 4.69
672 706 2.887568 GTGATGCGAGGTGCTCCG 60.888 66.667 0.00 0.00 46.63 4.63
673 707 2.512515 GGTGATGCGAGGTGCTCC 60.513 66.667 0.00 0.00 46.63 4.70
674 708 2.887568 CGGTGATGCGAGGTGCTC 60.888 66.667 0.00 0.00 46.63 4.26
701 735 3.556817 CTCCATAGCAGTGCCAACA 57.443 52.632 12.58 0.00 0.00 3.33
712 746 2.510948 GCACGACGATGCTCCATAG 58.489 57.895 0.00 0.00 42.62 2.23
713 747 4.730081 GCACGACGATGCTCCATA 57.270 55.556 0.00 0.00 42.62 2.74
719 753 0.301687 CAATGGTAGCACGACGATGC 59.698 55.000 0.00 8.10 46.50 3.91
720 754 1.640428 ACAATGGTAGCACGACGATG 58.360 50.000 0.00 0.00 0.00 3.84
721 755 3.079960 CTACAATGGTAGCACGACGAT 57.920 47.619 0.00 0.00 40.50 3.73
722 756 2.554806 CTACAATGGTAGCACGACGA 57.445 50.000 0.00 0.00 40.50 4.20
731 765 2.038689 TGGGCGTTTGACTACAATGGTA 59.961 45.455 0.00 0.00 35.85 3.25
732 766 1.202830 TGGGCGTTTGACTACAATGGT 60.203 47.619 0.00 0.00 35.85 3.55
733 767 1.468520 CTGGGCGTTTGACTACAATGG 59.531 52.381 0.00 0.00 35.85 3.16
734 768 1.135689 GCTGGGCGTTTGACTACAATG 60.136 52.381 0.00 0.00 35.85 2.82
735 769 1.165270 GCTGGGCGTTTGACTACAAT 58.835 50.000 0.00 0.00 35.85 2.71
736 770 0.107831 AGCTGGGCGTTTGACTACAA 59.892 50.000 0.00 0.00 0.00 2.41
737 771 0.107831 AAGCTGGGCGTTTGACTACA 59.892 50.000 0.00 0.00 0.00 2.74
738 772 0.796927 GAAGCTGGGCGTTTGACTAC 59.203 55.000 0.00 0.00 0.00 2.73
739 773 0.669318 CGAAGCTGGGCGTTTGACTA 60.669 55.000 0.00 0.00 0.00 2.59
740 774 1.961277 CGAAGCTGGGCGTTTGACT 60.961 57.895 0.00 0.00 0.00 3.41
741 775 2.556287 CGAAGCTGGGCGTTTGAC 59.444 61.111 0.00 0.00 0.00 3.18
754 788 1.569493 CACCACTTTGTCGGCGAAG 59.431 57.895 12.92 15.56 40.97 3.79
755 789 2.539338 GCACCACTTTGTCGGCGAA 61.539 57.895 12.92 0.00 0.00 4.70
756 790 2.970324 GCACCACTTTGTCGGCGA 60.970 61.111 4.99 4.99 0.00 5.54
757 791 4.368808 CGCACCACTTTGTCGGCG 62.369 66.667 0.00 0.00 38.45 6.46
758 792 4.025401 CCGCACCACTTTGTCGGC 62.025 66.667 0.00 0.00 32.21 5.54
759 793 4.025401 GCCGCACCACTTTGTCGG 62.025 66.667 0.00 0.00 38.45 4.79
760 794 2.954753 GAGCCGCACCACTTTGTCG 61.955 63.158 0.00 0.00 0.00 4.35
761 795 2.617274 GGAGCCGCACCACTTTGTC 61.617 63.158 1.41 0.00 0.00 3.18
762 796 2.594592 GGAGCCGCACCACTTTGT 60.595 61.111 1.41 0.00 0.00 2.83
763 797 2.281761 AGGAGCCGCACCACTTTG 60.282 61.111 9.69 0.00 0.00 2.77
764 798 2.281761 CAGGAGCCGCACCACTTT 60.282 61.111 9.69 0.00 0.00 2.66
803 837 3.257561 CATGAGTCGCCGCGGAAG 61.258 66.667 33.48 22.35 0.00 3.46
804 838 3.583276 AACATGAGTCGCCGCGGAA 62.583 57.895 33.48 13.91 0.00 4.30
805 839 4.063967 AACATGAGTCGCCGCGGA 62.064 61.111 33.48 5.65 0.00 5.54
806 840 3.853330 CAACATGAGTCGCCGCGG 61.853 66.667 24.05 24.05 0.00 6.46
807 841 2.667318 AACAACATGAGTCGCCGCG 61.667 57.895 6.39 6.39 0.00 6.46
808 842 1.154413 CAACAACATGAGTCGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
809 843 1.154413 GCAACAACATGAGTCGCCG 60.154 57.895 0.00 0.00 0.00 6.46
810 844 0.593128 AAGCAACAACATGAGTCGCC 59.407 50.000 0.00 0.00 0.00 5.54
811 845 1.722751 CGAAGCAACAACATGAGTCGC 60.723 52.381 0.00 0.00 0.00 5.19
812 846 2.217353 CGAAGCAACAACATGAGTCG 57.783 50.000 0.00 0.00 0.00 4.18
827 861 1.418342 CGGGTGAACATACGGCGAAG 61.418 60.000 16.62 5.04 0.00 3.79
828 862 1.446445 CGGGTGAACATACGGCGAA 60.446 57.895 16.62 0.00 0.00 4.70
829 863 1.669049 ATCGGGTGAACATACGGCGA 61.669 55.000 16.62 0.00 0.00 5.54
830 864 1.213094 GATCGGGTGAACATACGGCG 61.213 60.000 4.80 4.80 0.00 6.46
831 865 0.878961 GGATCGGGTGAACATACGGC 60.879 60.000 0.00 0.00 0.00 5.68
832 866 0.462375 TGGATCGGGTGAACATACGG 59.538 55.000 0.00 0.00 0.00 4.02
833 867 2.303163 TTGGATCGGGTGAACATACG 57.697 50.000 0.00 0.00 0.00 3.06
834 868 2.878406 CCATTGGATCGGGTGAACATAC 59.122 50.000 0.00 0.00 0.00 2.39
835 869 2.748132 GCCATTGGATCGGGTGAACATA 60.748 50.000 6.95 0.00 0.00 2.29
836 870 2.023788 GCCATTGGATCGGGTGAACAT 61.024 52.381 6.95 0.00 0.00 2.71
837 871 0.679640 GCCATTGGATCGGGTGAACA 60.680 55.000 6.95 0.00 0.00 3.18
838 872 0.394352 AGCCATTGGATCGGGTGAAC 60.394 55.000 6.95 0.00 0.00 3.18
839 873 1.998530 AGCCATTGGATCGGGTGAA 59.001 52.632 6.95 0.00 0.00 3.18
840 874 3.739922 AGCCATTGGATCGGGTGA 58.260 55.556 6.95 0.00 0.00 4.02
841 875 3.831883 CAGCCATTGGATCGGGTG 58.168 61.111 6.95 2.73 43.73 4.61
842 876 2.124151 GCAGCCATTGGATCGGGT 60.124 61.111 6.95 0.00 0.00 5.28
843 877 3.282157 CGCAGCCATTGGATCGGG 61.282 66.667 6.95 0.13 0.00 5.14
844 878 2.203056 TCGCAGCCATTGGATCGG 60.203 61.111 6.95 0.00 0.00 4.18
845 879 2.249535 CCTCGCAGCCATTGGATCG 61.250 63.158 6.95 6.67 0.00 3.69
846 880 1.895707 CCCTCGCAGCCATTGGATC 60.896 63.158 6.95 0.00 0.00 3.36
847 881 1.925285 TTCCCTCGCAGCCATTGGAT 61.925 55.000 6.95 0.00 0.00 3.41
848 882 2.541547 CTTCCCTCGCAGCCATTGGA 62.542 60.000 6.95 0.00 0.00 3.53
849 883 2.045045 TTCCCTCGCAGCCATTGG 60.045 61.111 0.00 0.00 0.00 3.16
850 884 2.117156 CCTTCCCTCGCAGCCATTG 61.117 63.158 0.00 0.00 0.00 2.82
851 885 1.639635 ATCCTTCCCTCGCAGCCATT 61.640 55.000 0.00 0.00 0.00 3.16
852 886 2.049627 GATCCTTCCCTCGCAGCCAT 62.050 60.000 0.00 0.00 0.00 4.40
853 887 2.688666 ATCCTTCCCTCGCAGCCA 60.689 61.111 0.00 0.00 0.00 4.75
854 888 2.110006 GATCCTTCCCTCGCAGCC 59.890 66.667 0.00 0.00 0.00 4.85
855 889 2.110006 GGATCCTTCCCTCGCAGC 59.890 66.667 3.84 0.00 35.84 5.25
856 890 2.127869 TCGGATCCTTCCCTCGCAG 61.128 63.158 10.75 0.00 39.01 5.18
857 891 2.043349 TCGGATCCTTCCCTCGCA 60.043 61.111 10.75 0.00 39.01 5.10
858 892 2.417936 GTCGGATCCTTCCCTCGC 59.582 66.667 10.75 0.00 39.01 5.03
859 893 2.722487 CGTCGGATCCTTCCCTCG 59.278 66.667 10.75 1.85 39.01 4.63
860 894 3.130227 CCGTCGGATCCTTCCCTC 58.870 66.667 4.91 0.00 39.01 4.30
861 895 3.155167 GCCGTCGGATCCTTCCCT 61.155 66.667 17.49 0.00 39.01 4.20
862 896 4.237207 GGCCGTCGGATCCTTCCC 62.237 72.222 17.49 0.00 39.01 3.97
863 897 4.237207 GGGCCGTCGGATCCTTCC 62.237 72.222 17.49 5.01 38.81 3.46
864 898 2.808206 ATGGGCCGTCGGATCCTTC 61.808 63.158 17.49 1.50 0.00 3.46
865 899 2.768344 ATGGGCCGTCGGATCCTT 60.768 61.111 17.49 10.75 0.00 3.36
866 900 3.550431 CATGGGCCGTCGGATCCT 61.550 66.667 17.49 3.21 0.00 3.24
867 901 3.546543 TCATGGGCCGTCGGATCC 61.547 66.667 17.49 15.86 0.00 3.36
868 902 2.280186 GTCATGGGCCGTCGGATC 60.280 66.667 17.49 6.39 0.00 3.36
869 903 3.861797 GGTCATGGGCCGTCGGAT 61.862 66.667 17.49 0.00 0.00 4.18
873 907 4.832608 GTCGGGTCATGGGCCGTC 62.833 72.222 0.00 0.00 0.00 4.79
875 909 4.838152 CAGTCGGGTCATGGGCCG 62.838 72.222 0.00 0.00 0.00 6.13
876 910 2.270874 AATCAGTCGGGTCATGGGCC 62.271 60.000 0.00 0.00 0.00 5.80
877 911 0.394352 AAATCAGTCGGGTCATGGGC 60.394 55.000 0.00 0.00 0.00 5.36
878 912 1.668419 GAAATCAGTCGGGTCATGGG 58.332 55.000 0.00 0.00 0.00 4.00
879 913 1.290203 CGAAATCAGTCGGGTCATGG 58.710 55.000 0.00 0.00 37.37 3.66
880 914 0.652592 GCGAAATCAGTCGGGTCATG 59.347 55.000 0.00 0.00 41.40 3.07
881 915 0.462047 GGCGAAATCAGTCGGGTCAT 60.462 55.000 0.00 0.00 41.40 3.06
882 916 1.079405 GGCGAAATCAGTCGGGTCA 60.079 57.895 0.00 0.00 41.40 4.02
883 917 0.462047 ATGGCGAAATCAGTCGGGTC 60.462 55.000 0.00 0.00 41.40 4.46
884 918 0.744414 CATGGCGAAATCAGTCGGGT 60.744 55.000 0.00 0.00 41.40 5.28
885 919 1.439353 CCATGGCGAAATCAGTCGGG 61.439 60.000 0.00 0.00 41.40 5.14
886 920 0.744414 ACCATGGCGAAATCAGTCGG 60.744 55.000 13.04 0.00 41.40 4.79
887 921 0.652592 GACCATGGCGAAATCAGTCG 59.347 55.000 13.04 0.00 43.98 4.18
888 922 1.017387 GGACCATGGCGAAATCAGTC 58.983 55.000 13.04 0.00 0.00 3.51
889 923 0.744414 CGGACCATGGCGAAATCAGT 60.744 55.000 13.04 0.00 0.00 3.41
890 924 0.461870 TCGGACCATGGCGAAATCAG 60.462 55.000 13.04 2.12 0.00 2.90
891 925 0.742990 GTCGGACCATGGCGAAATCA 60.743 55.000 13.04 0.00 0.00 2.57
892 926 1.762222 CGTCGGACCATGGCGAAATC 61.762 60.000 13.04 0.42 0.00 2.17
893 927 1.813753 CGTCGGACCATGGCGAAAT 60.814 57.895 13.04 0.00 0.00 2.17
894 928 2.433491 CGTCGGACCATGGCGAAA 60.433 61.111 13.04 0.00 0.00 3.46
900 934 4.429212 TCCACGCGTCGGACCATG 62.429 66.667 21.41 4.44 0.00 3.66
925 959 6.001449 TCCTCCTTATATTGGTTTGAGGTG 57.999 41.667 0.00 0.00 39.13 4.00
926 960 5.398012 GCTCCTCCTTATATTGGTTTGAGGT 60.398 44.000 0.00 0.00 39.13 3.85
927 961 5.066593 GCTCCTCCTTATATTGGTTTGAGG 58.933 45.833 0.00 0.00 39.38 3.86
928 962 5.684704 TGCTCCTCCTTATATTGGTTTGAG 58.315 41.667 0.00 0.00 0.00 3.02
929 963 5.708736 TGCTCCTCCTTATATTGGTTTGA 57.291 39.130 0.00 0.00 0.00 2.69
954 988 0.546507 TTTGGATTTTGGGGAGGGGC 60.547 55.000 0.00 0.00 0.00 5.80
970 1005 1.511887 CTGCCCGCGTTCGATTTTG 60.512 57.895 4.92 0.00 38.10 2.44
1158 1196 4.524318 TCTTCGCCGCCGGAATCC 62.524 66.667 7.68 0.00 34.56 3.01
1369 1407 4.938756 ACCCTGGCCTGGAACCCA 62.939 66.667 29.21 0.00 0.00 4.51
1626 1693 0.677098 TCGAGTTGAGACGGAGGGAG 60.677 60.000 0.00 0.00 0.00 4.30
1628 1695 0.961358 AGTCGAGTTGAGACGGAGGG 60.961 60.000 0.00 0.00 42.97 4.30
1629 1696 0.448593 GAGTCGAGTTGAGACGGAGG 59.551 60.000 0.00 0.00 42.97 4.30
1630 1697 1.444836 AGAGTCGAGTTGAGACGGAG 58.555 55.000 0.00 0.00 42.97 4.63
1631 1698 2.028294 ACTAGAGTCGAGTTGAGACGGA 60.028 50.000 0.00 0.00 42.97 4.69
1632 1699 2.348660 ACTAGAGTCGAGTTGAGACGG 58.651 52.381 0.00 0.00 42.97 4.79
1633 1700 5.721876 AATACTAGAGTCGAGTTGAGACG 57.278 43.478 11.37 0.00 42.97 4.18
1634 1701 8.367943 TCATAATACTAGAGTCGAGTTGAGAC 57.632 38.462 11.37 0.00 38.81 3.36
1635 1702 7.658167 CCTCATAATACTAGAGTCGAGTTGAGA 59.342 40.741 23.59 11.29 0.00 3.27
1636 1703 7.094975 CCCTCATAATACTAGAGTCGAGTTGAG 60.095 44.444 18.61 18.61 0.00 3.02
1637 1704 6.711194 CCCTCATAATACTAGAGTCGAGTTGA 59.289 42.308 11.37 8.04 0.00 3.18
1638 1705 6.711194 TCCCTCATAATACTAGAGTCGAGTTG 59.289 42.308 11.37 4.07 0.00 3.16
1639 1706 6.839454 TCCCTCATAATACTAGAGTCGAGTT 58.161 40.000 11.37 0.00 0.00 3.01
1640 1707 6.436738 TCCCTCATAATACTAGAGTCGAGT 57.563 41.667 10.90 10.90 0.00 4.18
1641 1708 7.335627 AGATCCCTCATAATACTAGAGTCGAG 58.664 42.308 0.00 0.00 0.00 4.04
1642 1709 7.260387 AGATCCCTCATAATACTAGAGTCGA 57.740 40.000 0.00 0.00 0.00 4.20
1643 1710 7.225931 GCTAGATCCCTCATAATACTAGAGTCG 59.774 44.444 0.00 0.00 0.00 4.18
1644 1711 8.272173 AGCTAGATCCCTCATAATACTAGAGTC 58.728 40.741 0.00 0.00 0.00 3.36
1645 1712 8.052748 CAGCTAGATCCCTCATAATACTAGAGT 58.947 40.741 0.00 0.00 0.00 3.24
1646 1713 7.502226 CCAGCTAGATCCCTCATAATACTAGAG 59.498 44.444 0.00 0.00 0.00 2.43
1647 1714 7.350382 CCAGCTAGATCCCTCATAATACTAGA 58.650 42.308 0.00 0.00 0.00 2.43
1671 1744 1.906105 TTGGGACGGAGCATACACCC 61.906 60.000 0.00 0.00 37.99 4.61
1763 1838 6.922407 GCTGCATTCTTTCTTTCTTTCTTTCT 59.078 34.615 0.00 0.00 0.00 2.52
1764 1839 6.922407 AGCTGCATTCTTTCTTTCTTTCTTTC 59.078 34.615 1.02 0.00 0.00 2.62
1765 1840 6.814043 AGCTGCATTCTTTCTTTCTTTCTTT 58.186 32.000 1.02 0.00 0.00 2.52
1766 1841 6.402456 AGCTGCATTCTTTCTTTCTTTCTT 57.598 33.333 1.02 0.00 0.00 2.52
1767 1842 6.402456 AAGCTGCATTCTTTCTTTCTTTCT 57.598 33.333 1.02 0.00 0.00 2.52
1768 1843 7.223387 TGAAAAGCTGCATTCTTTCTTTCTTTC 59.777 33.333 15.89 7.15 33.06 2.62
1769 1844 7.043565 TGAAAAGCTGCATTCTTTCTTTCTTT 58.956 30.769 15.89 0.00 33.06 2.52
1770 1845 6.576185 TGAAAAGCTGCATTCTTTCTTTCTT 58.424 32.000 15.89 0.00 33.06 2.52
1855 1930 5.363939 GTCAGGGTTGATAAATCAGAGGAG 58.636 45.833 0.00 0.00 38.19 3.69
1856 1931 4.141937 CGTCAGGGTTGATAAATCAGAGGA 60.142 45.833 0.00 0.00 38.19 3.71
2027 2106 8.077386 TGTTTTGTATTCCGTTCCTTTCAATAC 58.923 33.333 0.00 0.00 32.70 1.89
2068 2147 2.818432 AGAAACATTGCTGAGCTTCTGG 59.182 45.455 5.83 0.00 0.00 3.86
2088 2167 4.108699 AGCAGAACTCTTTCATCTCGAG 57.891 45.455 5.93 5.93 33.72 4.04
2160 2239 1.546476 ACAGGAGGACACAACTCGATC 59.454 52.381 0.00 0.00 35.82 3.69
2161 2240 1.633774 ACAGGAGGACACAACTCGAT 58.366 50.000 0.00 0.00 35.82 3.59
2162 2241 1.410004 AACAGGAGGACACAACTCGA 58.590 50.000 0.00 0.00 35.82 4.04
2163 2242 2.240493 AAACAGGAGGACACAACTCG 57.760 50.000 0.00 0.00 35.82 4.18
2231 2312 3.349022 TCGGGACAAAAACAAACTCTGT 58.651 40.909 0.00 0.00 41.27 3.41
2450 2535 9.740239 ATCAGCAATGTGATGAATTACAAATAC 57.260 29.630 0.00 0.00 46.47 1.89
2631 2735 3.317993 ACAAATTGTCAGTACAGCAACCC 59.682 43.478 0.00 0.00 36.83 4.11
2691 2795 1.546323 CCCAGTATCCACATCCATGCC 60.546 57.143 0.00 0.00 0.00 4.40
2696 2800 0.398318 GAGCCCCAGTATCCACATCC 59.602 60.000 0.00 0.00 0.00 3.51
2707 2811 0.109132 GCAAAATCAACGAGCCCCAG 60.109 55.000 0.00 0.00 0.00 4.45
2715 2819 5.888412 AAAAAGCAGTAGCAAAATCAACG 57.112 34.783 0.00 0.00 45.49 4.10
2719 2823 4.864806 GCCCTAAAAAGCAGTAGCAAAATC 59.135 41.667 0.00 0.00 45.49 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.