Multiple sequence alignment - TraesCS3D01G018300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G018300 chr3D 100.000 4423 0 0 1 4423 6170895 6166473 0.000000e+00 8168.0
1 TraesCS3D01G018300 chr3D 83.576 962 141 14 1 955 73859742 73860693 0.000000e+00 885.0
2 TraesCS3D01G018300 chr3D 81.243 949 135 26 2504 3419 6141705 6142643 0.000000e+00 726.0
3 TraesCS3D01G018300 chr3D 82.183 449 65 8 495 931 45925230 45925675 5.400000e-99 372.0
4 TraesCS3D01G018300 chr3D 74.429 438 82 23 536 959 14741276 14740855 1.270000e-35 161.0
5 TraesCS3D01G018300 chr3A 94.649 1738 71 11 2156 3883 14765433 14767158 0.000000e+00 2675.0
6 TraesCS3D01G018300 chr3A 91.222 843 27 9 1038 1843 14764472 14765304 0.000000e+00 1103.0
7 TraesCS3D01G018300 chr3A 90.930 430 17 7 3883 4311 14767480 14767888 3.860000e-155 558.0
8 TraesCS3D01G018300 chr3A 76.598 829 149 26 2631 3419 13406002 13405179 8.850000e-112 414.0
9 TraesCS3D01G018300 chr3A 78.056 360 52 19 2171 2516 13406409 13406063 7.500000e-48 202.0
10 TraesCS3D01G018300 chr3B 92.234 1249 39 16 2651 3894 681569379 681568184 0.000000e+00 1716.0
11 TraesCS3D01G018300 chr3B 89.051 822 48 23 1054 1843 681570643 681569832 0.000000e+00 981.0
12 TraesCS3D01G018300 chr3B 80.892 942 138 24 2504 3419 7383435 7382510 0.000000e+00 704.0
13 TraesCS3D01G018300 chr3B 80.293 751 130 11 58 799 807485143 807485884 6.470000e-153 551.0
14 TraesCS3D01G018300 chr3B 91.124 338 22 5 2156 2488 681569708 681569374 6.750000e-123 451.0
15 TraesCS3D01G018300 chr3B 74.714 700 126 36 2666 3323 8494192 8494882 9.430000e-67 265.0
16 TraesCS3D01G018300 chr3B 93.103 145 9 1 2023 2166 378689155 378689299 1.250000e-50 211.0
17 TraesCS3D01G018300 chr3B 92.593 135 10 0 1899 2033 681569833 681569699 1.260000e-45 195.0
18 TraesCS3D01G018300 chr3B 96.907 97 3 0 3977 4073 681568138 681568042 3.540000e-36 163.0
19 TraesCS3D01G018300 chr3B 80.556 216 31 5 2 206 819994566 819994781 5.920000e-34 156.0
20 TraesCS3D01G018300 chr3B 100.000 31 0 0 3975 4005 7378850 7378820 1.720000e-04 58.4
21 TraesCS3D01G018300 chr1D 84.375 928 114 20 25 932 314326829 314325913 0.000000e+00 881.0
22 TraesCS3D01G018300 chr1D 79.176 874 134 36 56 894 435267271 435268131 2.990000e-156 562.0
23 TraesCS3D01G018300 chr1D 100.000 54 0 0 1844 1897 254394197 254394144 2.810000e-17 100.0
24 TraesCS3D01G018300 chr7A 82.563 952 114 23 31 959 547760100 547759178 0.000000e+00 791.0
25 TraesCS3D01G018300 chr7A 98.425 127 2 0 2032 2158 593450828 593450702 1.600000e-54 224.0
26 TraesCS3D01G018300 chr6A 81.256 987 149 22 1 959 591388953 591387975 0.000000e+00 765.0
27 TraesCS3D01G018300 chr2B 80.570 983 156 24 1 955 723003792 723002817 0.000000e+00 725.0
28 TraesCS3D01G018300 chr2B 95.714 140 4 2 2021 2159 199013715 199013853 1.600000e-54 224.0
29 TraesCS3D01G018300 chr2D 80.503 795 113 32 139 904 45509936 45509155 4.960000e-159 571.0
30 TraesCS3D01G018300 chr2D 96.947 131 4 0 2031 2161 300887316 300887446 2.070000e-53 220.0
31 TraesCS3D01G018300 chr2D 92.568 148 8 3 2032 2177 525904952 525904806 4.480000e-50 209.0
32 TraesCS3D01G018300 chr2D 97.674 43 1 0 3922 3964 114515127 114515169 1.710000e-09 75.0
33 TraesCS3D01G018300 chr2D 95.349 43 0 1 3922 3964 80671517 80671557 2.860000e-07 67.6
34 TraesCS3D01G018300 chr7B 80.214 748 131 14 163 900 185285603 185284863 3.010000e-151 545.0
35 TraesCS3D01G018300 chr7B 82.081 173 27 4 1 170 185295997 185295826 1.280000e-30 145.0
36 TraesCS3D01G018300 chr7B 95.652 46 0 1 3919 3964 131371913 131371956 6.140000e-09 73.1
37 TraesCS3D01G018300 chr7B 89.831 59 1 3 3922 3977 698719839 698719895 2.210000e-08 71.3
38 TraesCS3D01G018300 chr7B 89.474 57 2 2 3919 3974 649465366 649465313 7.940000e-08 69.4
39 TraesCS3D01G018300 chr5D 76.017 934 166 34 1 901 424209193 424210101 8.790000e-117 431.0
40 TraesCS3D01G018300 chr5D 80.761 447 65 11 479 904 528396224 528396670 3.300000e-86 329.0
41 TraesCS3D01G018300 chr5D 96.269 134 5 0 2032 2165 558898540 558898407 2.070000e-53 220.0
42 TraesCS3D01G018300 chr5D 81.507 146 25 2 59 202 528313246 528313391 7.770000e-23 119.0
43 TraesCS3D01G018300 chr5A 81.766 521 85 6 346 863 662750445 662750958 1.140000e-115 427.0
44 TraesCS3D01G018300 chr4B 95.035 141 5 2 2032 2172 340640644 340640782 2.070000e-53 220.0
45 TraesCS3D01G018300 chr2A 97.656 128 3 0 2031 2158 773183328 773183455 2.070000e-53 220.0
46 TraesCS3D01G018300 chr2A 92.424 66 2 2 3916 3981 15237279 15237341 1.690000e-14 91.6
47 TraesCS3D01G018300 chr6D 92.053 151 8 3 2028 2176 54003304 54003156 4.480000e-50 209.0
48 TraesCS3D01G018300 chr6D 100.000 54 0 0 1844 1897 135460531 135460478 2.810000e-17 100.0
49 TraesCS3D01G018300 chr6D 100.000 54 0 0 1844 1897 168261585 168261638 2.810000e-17 100.0
50 TraesCS3D01G018300 chr6D 100.000 54 0 0 1844 1897 218424802 218424749 2.810000e-17 100.0
51 TraesCS3D01G018300 chr6D 100.000 54 0 0 1844 1897 458919231 458919284 2.810000e-17 100.0
52 TraesCS3D01G018300 chr4D 85.350 157 18 3 14 165 57925453 57925609 1.650000e-34 158.0
53 TraesCS3D01G018300 chr4D 100.000 54 0 0 1844 1897 207366351 207366298 2.810000e-17 100.0
54 TraesCS3D01G018300 chr4D 100.000 54 0 0 1844 1897 348380699 348380646 2.810000e-17 100.0
55 TraesCS3D01G018300 chr4D 100.000 54 0 0 1844 1897 411610673 411610726 2.810000e-17 100.0
56 TraesCS3D01G018300 chr4D 89.286 56 3 3 3901 3955 449455596 449455649 2.860000e-07 67.6
57 TraesCS3D01G018300 chr4A 100.000 55 0 0 1843 1897 255830943 255830997 7.830000e-18 102.0
58 TraesCS3D01G018300 chr5B 91.935 62 2 1 3922 3983 645553395 645553453 2.830000e-12 84.2
59 TraesCS3D01G018300 chr7D 95.745 47 0 1 3921 3967 618040485 618040441 1.710000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G018300 chr3D 6166473 6170895 4422 True 8168.000000 8168 100.0000 1 4423 1 chr3D.!!$R1 4422
1 TraesCS3D01G018300 chr3D 73859742 73860693 951 False 885.000000 885 83.5760 1 955 1 chr3D.!!$F3 954
2 TraesCS3D01G018300 chr3D 6141705 6142643 938 False 726.000000 726 81.2430 2504 3419 1 chr3D.!!$F1 915
3 TraesCS3D01G018300 chr3A 14764472 14767888 3416 False 1445.333333 2675 92.2670 1038 4311 3 chr3A.!!$F1 3273
4 TraesCS3D01G018300 chr3A 13405179 13406409 1230 True 308.000000 414 77.3270 2171 3419 2 chr3A.!!$R1 1248
5 TraesCS3D01G018300 chr3B 681568042 681570643 2601 True 701.200000 1716 92.3818 1054 4073 5 chr3B.!!$R2 3019
6 TraesCS3D01G018300 chr3B 807485143 807485884 741 False 551.000000 551 80.2930 58 799 1 chr3B.!!$F3 741
7 TraesCS3D01G018300 chr3B 7378820 7383435 4615 True 381.200000 704 90.4460 2504 4005 2 chr3B.!!$R1 1501
8 TraesCS3D01G018300 chr3B 8494192 8494882 690 False 265.000000 265 74.7140 2666 3323 1 chr3B.!!$F1 657
9 TraesCS3D01G018300 chr1D 314325913 314326829 916 True 881.000000 881 84.3750 25 932 1 chr1D.!!$R2 907
10 TraesCS3D01G018300 chr1D 435267271 435268131 860 False 562.000000 562 79.1760 56 894 1 chr1D.!!$F1 838
11 TraesCS3D01G018300 chr7A 547759178 547760100 922 True 791.000000 791 82.5630 31 959 1 chr7A.!!$R1 928
12 TraesCS3D01G018300 chr6A 591387975 591388953 978 True 765.000000 765 81.2560 1 959 1 chr6A.!!$R1 958
13 TraesCS3D01G018300 chr2B 723002817 723003792 975 True 725.000000 725 80.5700 1 955 1 chr2B.!!$R1 954
14 TraesCS3D01G018300 chr2D 45509155 45509936 781 True 571.000000 571 80.5030 139 904 1 chr2D.!!$R1 765
15 TraesCS3D01G018300 chr7B 185284863 185285603 740 True 545.000000 545 80.2140 163 900 1 chr7B.!!$R1 737
16 TraesCS3D01G018300 chr5D 424209193 424210101 908 False 431.000000 431 76.0170 1 901 1 chr5D.!!$F1 900
17 TraesCS3D01G018300 chr5A 662750445 662750958 513 False 427.000000 427 81.7660 346 863 1 chr5A.!!$F1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 1022 0.730265 GGCGTGTTCACTTTGTGTCA 59.270 50.000 1.53 0.0 34.79 3.58 F
1222 1340 0.030908 CGTCCAGTCTATCTTCCGGC 59.969 60.000 0.00 0.0 0.00 6.13 F
1327 1445 0.032515 TGATAGAGGTGCGGAAGGGA 60.033 55.000 0.00 0.0 0.00 4.20 F
2046 2196 1.364678 TCTTGTACTCCCTCCATCCCA 59.635 52.381 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 2039 0.608640 CAGGGCTCTGTAACGTCCTT 59.391 55.0 5.06 0.0 36.30 3.36 R
2141 2291 0.635009 AGATACTCCCTCCGTCCCAA 59.365 55.0 0.00 0.0 0.00 4.12 R
2143 2293 1.041437 CAAGATACTCCCTCCGTCCC 58.959 60.0 0.00 0.0 0.00 4.46 R
3813 7449 0.172578 TGTCGCTTCACGGATCGATT 59.827 50.0 0.00 0.0 43.89 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 140 1.980052 CCGACAAGGTGAGGGCTTA 59.020 57.895 0.00 0.00 34.51 3.09
124 146 1.561542 CAAGGTGAGGGCTTAGTCCAT 59.438 52.381 5.39 0.00 0.00 3.41
127 149 1.204146 GTGAGGGCTTAGTCCATCCA 58.796 55.000 5.39 0.00 36.16 3.41
135 157 2.952310 GCTTAGTCCATCCAATCCCAAC 59.048 50.000 0.00 0.00 0.00 3.77
141 165 1.153168 ATCCAATCCCAACGGCTCG 60.153 57.895 0.00 0.00 0.00 5.03
249 291 3.562232 GGGGTGGTGGTGGAACGA 61.562 66.667 0.00 0.00 38.12 3.85
331 374 1.073706 AGTTGGGGGAGTCTGGTGT 60.074 57.895 0.00 0.00 0.00 4.16
778 881 4.587262 ACGCTTTCTTTAAAAAGGATGGGT 59.413 37.500 11.36 11.36 38.88 4.51
781 884 6.395629 GCTTTCTTTAAAAAGGATGGGTACC 58.604 40.000 2.17 2.17 41.96 3.34
782 885 6.210784 GCTTTCTTTAAAAAGGATGGGTACCT 59.789 38.462 12.72 0.00 42.05 3.08
865 970 1.302192 GTGGTTGGCGGCTGACTTA 60.302 57.895 11.43 0.58 0.00 2.24
894 999 2.125961 GCGGACATAGAGGGGACGT 61.126 63.158 0.00 0.00 0.00 4.34
916 1022 0.730265 GGCGTGTTCACTTTGTGTCA 59.270 50.000 1.53 0.00 34.79 3.58
919 1025 1.396648 CGTGTTCACTTTGTGTCAGCA 59.603 47.619 1.53 0.00 34.79 4.41
933 1039 1.786579 GTCAGCACCAACGCATTTTTC 59.213 47.619 0.00 0.00 0.00 2.29
956 1062 7.169158 TCACTCAAATTTAGGCCTAAAATGG 57.831 36.000 35.41 26.87 38.38 3.16
959 1065 6.070824 ACTCAAATTTAGGCCTAAAATGGGTG 60.071 38.462 35.80 28.10 37.79 4.61
960 1066 6.019748 TCAAATTTAGGCCTAAAATGGGTGA 58.980 36.000 35.41 27.82 38.38 4.02
961 1067 6.154363 TCAAATTTAGGCCTAAAATGGGTGAG 59.846 38.462 35.41 20.60 38.38 3.51
962 1068 4.938575 TTTAGGCCTAAAATGGGTGAGA 57.061 40.909 31.37 8.66 32.64 3.27
963 1069 4.938575 TTAGGCCTAAAATGGGTGAGAA 57.061 40.909 23.21 0.00 0.00 2.87
964 1070 3.825908 AGGCCTAAAATGGGTGAGAAA 57.174 42.857 1.29 0.00 0.00 2.52
965 1071 4.126520 AGGCCTAAAATGGGTGAGAAAA 57.873 40.909 1.29 0.00 0.00 2.29
966 1072 4.488770 AGGCCTAAAATGGGTGAGAAAAA 58.511 39.130 1.29 0.00 0.00 1.94
967 1073 4.528206 AGGCCTAAAATGGGTGAGAAAAAG 59.472 41.667 1.29 0.00 0.00 2.27
968 1074 4.245660 GCCTAAAATGGGTGAGAAAAAGC 58.754 43.478 0.00 0.00 0.00 3.51
969 1075 4.262420 GCCTAAAATGGGTGAGAAAAAGCA 60.262 41.667 0.00 0.00 0.00 3.91
970 1076 5.741673 GCCTAAAATGGGTGAGAAAAAGCAA 60.742 40.000 0.00 0.00 0.00 3.91
971 1077 6.287525 CCTAAAATGGGTGAGAAAAAGCAAA 58.712 36.000 0.00 0.00 0.00 3.68
972 1078 6.424812 CCTAAAATGGGTGAGAAAAAGCAAAG 59.575 38.462 0.00 0.00 0.00 2.77
973 1079 5.612725 AAATGGGTGAGAAAAAGCAAAGA 57.387 34.783 0.00 0.00 0.00 2.52
974 1080 4.590850 ATGGGTGAGAAAAAGCAAAGAC 57.409 40.909 0.00 0.00 0.00 3.01
975 1081 3.360867 TGGGTGAGAAAAAGCAAAGACA 58.639 40.909 0.00 0.00 0.00 3.41
976 1082 3.960102 TGGGTGAGAAAAAGCAAAGACAT 59.040 39.130 0.00 0.00 0.00 3.06
977 1083 4.405358 TGGGTGAGAAAAAGCAAAGACATT 59.595 37.500 0.00 0.00 0.00 2.71
978 1084 5.104982 TGGGTGAGAAAAAGCAAAGACATTT 60.105 36.000 0.00 0.00 0.00 2.32
979 1085 5.817296 GGGTGAGAAAAAGCAAAGACATTTT 59.183 36.000 0.00 0.00 0.00 1.82
980 1086 6.316140 GGGTGAGAAAAAGCAAAGACATTTTT 59.684 34.615 0.00 0.00 38.47 1.94
999 1105 4.769859 TTTTATTTTAGTGGGCACGGAC 57.230 40.909 0.00 0.00 36.20 4.79
1000 1106 3.420300 TTATTTTAGTGGGCACGGACA 57.580 42.857 0.00 0.00 36.20 4.02
1001 1107 2.507407 ATTTTAGTGGGCACGGACAT 57.493 45.000 0.00 0.00 36.20 3.06
1002 1108 1.529226 TTTTAGTGGGCACGGACATG 58.471 50.000 0.00 0.00 36.20 3.21
1003 1109 0.322098 TTTAGTGGGCACGGACATGG 60.322 55.000 0.00 0.00 36.20 3.66
1004 1110 2.191786 TTAGTGGGCACGGACATGGG 62.192 60.000 0.00 0.00 36.20 4.00
1005 1111 4.344865 GTGGGCACGGACATGGGT 62.345 66.667 0.00 0.00 0.00 4.51
1006 1112 4.343323 TGGGCACGGACATGGGTG 62.343 66.667 0.00 3.52 37.22 4.61
1008 1114 4.028490 GGCACGGACATGGGTGGA 62.028 66.667 13.43 0.00 34.76 4.02
1009 1115 2.746277 GCACGGACATGGGTGGAC 60.746 66.667 13.43 0.00 34.76 4.02
1019 1125 0.034477 ATGGGTGGACGAAATGGGTC 60.034 55.000 0.00 0.00 0.00 4.46
1020 1126 1.377229 GGGTGGACGAAATGGGTCA 59.623 57.895 0.00 0.00 36.12 4.02
1021 1127 0.958876 GGGTGGACGAAATGGGTCAC 60.959 60.000 0.00 0.00 36.12 3.67
1022 1128 0.036306 GGTGGACGAAATGGGTCACT 59.964 55.000 0.00 0.00 36.12 3.41
1023 1129 1.439679 GTGGACGAAATGGGTCACTC 58.560 55.000 0.00 0.00 36.12 3.51
1024 1130 0.323629 TGGACGAAATGGGTCACTCC 59.676 55.000 0.00 0.00 36.12 3.85
1025 1131 0.739813 GGACGAAATGGGTCACTCCG 60.740 60.000 0.00 0.00 36.12 4.63
1026 1132 0.037605 GACGAAATGGGTCACTCCGT 60.038 55.000 0.00 0.00 37.00 4.69
1027 1133 0.395312 ACGAAATGGGTCACTCCGTT 59.605 50.000 0.00 0.00 37.61 4.44
1028 1134 0.796312 CGAAATGGGTCACTCCGTTG 59.204 55.000 0.00 0.00 36.26 4.10
1029 1135 0.521735 GAAATGGGTCACTCCGTTGC 59.478 55.000 0.00 0.00 36.26 4.17
1030 1136 0.110486 AAATGGGTCACTCCGTTGCT 59.890 50.000 0.00 0.00 36.26 3.91
1031 1137 0.321653 AATGGGTCACTCCGTTGCTC 60.322 55.000 0.00 0.00 34.93 4.26
1032 1138 1.480212 ATGGGTCACTCCGTTGCTCA 61.480 55.000 0.00 0.00 37.00 4.26
1033 1139 1.070786 GGGTCACTCCGTTGCTCAA 59.929 57.895 0.00 0.00 37.00 3.02
1034 1140 0.534203 GGGTCACTCCGTTGCTCAAA 60.534 55.000 0.00 0.00 37.00 2.69
1035 1141 0.586802 GGTCACTCCGTTGCTCAAAC 59.413 55.000 0.00 0.00 35.25 2.93
1036 1142 0.586802 GTCACTCCGTTGCTCAAACC 59.413 55.000 0.00 0.00 35.13 3.27
1046 1152 0.398696 TGCTCAAACCGCCTAAGGAA 59.601 50.000 0.00 0.00 34.73 3.36
1052 1158 1.804601 AACCGCCTAAGGAAAAGACG 58.195 50.000 0.00 0.00 34.73 4.18
1067 1173 5.363939 GAAAAGACGGATCATTCTCCATCT 58.636 41.667 0.00 0.00 39.46 2.90
1119 1225 1.280421 GGAACTGGATCCAGAAGCACT 59.720 52.381 41.91 20.29 46.30 4.40
1175 1293 2.889045 CCATCATGGCCAAGGTGATTAG 59.111 50.000 22.67 10.74 30.57 1.73
1176 1294 3.559069 CATCATGGCCAAGGTGATTAGT 58.441 45.455 16.34 0.00 30.57 2.24
1219 1337 1.041437 CCCCGTCCAGTCTATCTTCC 58.959 60.000 0.00 0.00 0.00 3.46
1221 1339 0.669077 CCGTCCAGTCTATCTTCCGG 59.331 60.000 0.00 0.00 0.00 5.14
1222 1340 0.030908 CGTCCAGTCTATCTTCCGGC 59.969 60.000 0.00 0.00 0.00 6.13
1223 1341 0.389757 GTCCAGTCTATCTTCCGGCC 59.610 60.000 0.00 0.00 0.00 6.13
1271 1389 0.469705 TGCACAGCTGAATGGGGTTT 60.470 50.000 23.35 0.00 0.00 3.27
1327 1445 0.032515 TGATAGAGGTGCGGAAGGGA 60.033 55.000 0.00 0.00 0.00 4.20
1407 1531 5.013704 AGGGTTTAATTTGGGGGAAATTGAC 59.986 40.000 0.00 0.00 42.98 3.18
1468 1593 1.539388 ACTTTGCAAATTCCATCGCGA 59.461 42.857 13.09 13.09 0.00 5.87
1525 1656 1.450312 CTGAGCATTCCGGTGTCCC 60.450 63.158 0.00 0.00 0.00 4.46
1737 1887 1.989620 CTGCTCCAGGAAGAAGGCT 59.010 57.895 0.00 0.00 0.00 4.58
1854 2004 3.898517 GTACTGAACCAAAAGCAGGTC 57.101 47.619 0.00 0.00 38.76 3.85
1855 2005 2.736670 ACTGAACCAAAAGCAGGTCT 57.263 45.000 0.00 0.00 38.76 3.85
1856 2006 2.301346 ACTGAACCAAAAGCAGGTCTG 58.699 47.619 0.00 0.00 38.76 3.51
1857 2007 2.092429 ACTGAACCAAAAGCAGGTCTGA 60.092 45.455 1.65 0.00 38.76 3.27
1858 2008 3.152341 CTGAACCAAAAGCAGGTCTGAT 58.848 45.455 1.65 0.00 38.76 2.90
1859 2009 3.565307 TGAACCAAAAGCAGGTCTGATT 58.435 40.909 1.65 0.00 41.42 2.57
1860 2010 4.724399 TGAACCAAAAGCAGGTCTGATTA 58.276 39.130 1.74 0.00 38.36 1.75
1861 2011 4.518970 TGAACCAAAAGCAGGTCTGATTAC 59.481 41.667 1.74 0.00 38.36 1.89
1862 2012 4.098914 ACCAAAAGCAGGTCTGATTACA 57.901 40.909 1.74 0.00 38.36 2.41
1863 2013 3.821033 ACCAAAAGCAGGTCTGATTACAC 59.179 43.478 1.74 0.00 38.36 2.90
1864 2014 3.191371 CCAAAAGCAGGTCTGATTACACC 59.809 47.826 1.74 0.00 38.36 4.16
1865 2015 4.074970 CAAAAGCAGGTCTGATTACACCT 58.925 43.478 1.74 0.00 38.36 4.00
1866 2016 5.245531 CAAAAGCAGGTCTGATTACACCTA 58.754 41.667 1.74 0.00 38.36 3.08
1867 2017 5.700402 AAAGCAGGTCTGATTACACCTAT 57.300 39.130 1.74 0.00 38.36 2.57
1868 2018 5.700402 AAGCAGGTCTGATTACACCTATT 57.300 39.130 0.00 0.00 37.44 1.73
1869 2019 5.283457 AGCAGGTCTGATTACACCTATTC 57.717 43.478 1.65 0.00 0.00 1.75
1870 2020 4.101741 AGCAGGTCTGATTACACCTATTCC 59.898 45.833 1.65 0.00 0.00 3.01
1871 2021 4.101741 GCAGGTCTGATTACACCTATTCCT 59.898 45.833 1.65 0.00 0.00 3.36
1872 2022 5.304614 GCAGGTCTGATTACACCTATTCCTA 59.695 44.000 1.65 0.00 0.00 2.94
1873 2023 6.183360 GCAGGTCTGATTACACCTATTCCTAA 60.183 42.308 1.65 0.00 0.00 2.69
1874 2024 7.473511 GCAGGTCTGATTACACCTATTCCTAAT 60.474 40.741 1.65 0.00 0.00 1.73
1875 2025 8.091449 CAGGTCTGATTACACCTATTCCTAATC 58.909 40.741 0.00 0.00 0.00 1.75
1876 2026 7.235812 AGGTCTGATTACACCTATTCCTAATCC 59.764 40.741 0.00 0.00 0.00 3.01
1877 2027 7.235812 GGTCTGATTACACCTATTCCTAATCCT 59.764 40.741 0.00 0.00 0.00 3.24
1878 2028 9.310449 GTCTGATTACACCTATTCCTAATCCTA 57.690 37.037 0.00 0.00 0.00 2.94
1879 2029 9.892444 TCTGATTACACCTATTCCTAATCCTAA 57.108 33.333 0.00 0.00 0.00 2.69
1895 2045 9.640963 CCTAATCCTAAATAGAATGTAAGGACG 57.359 37.037 0.00 0.00 36.03 4.79
1899 2049 9.978044 ATCCTAAATAGAATGTAAGGACGTTAC 57.022 33.333 10.44 10.44 41.45 2.50
1931 2081 7.239166 TGTACTCGACGAACTAGTATTAAGG 57.761 40.000 0.00 0.00 31.27 2.69
1937 2087 6.769822 TCGACGAACTAGTATTAAGGATTCCT 59.230 38.462 0.00 0.00 33.87 3.36
1952 2102 9.709495 TTAAGGATTCCTTTGTTGAATTGAATG 57.291 29.630 22.63 0.00 41.69 2.67
1960 2110 7.231317 TCCTTTGTTGAATTGAATGCTTACTCT 59.769 33.333 0.00 0.00 0.00 3.24
2010 2160 7.197071 TGCAATTTAGTTTCGTGTTATGAGT 57.803 32.000 0.00 0.00 0.00 3.41
2019 2169 4.123276 TCGTGTTATGAGTTTTTGACGC 57.877 40.909 0.00 0.00 0.00 5.19
2021 2171 4.084745 TCGTGTTATGAGTTTTTGACGCTC 60.085 41.667 0.00 0.00 0.00 5.03
2030 2180 5.177511 TGAGTTTTTGACGCTCTGTATCTTG 59.822 40.000 0.00 0.00 0.00 3.02
2031 2181 5.057149 AGTTTTTGACGCTCTGTATCTTGT 58.943 37.500 0.00 0.00 0.00 3.16
2032 2182 6.220930 AGTTTTTGACGCTCTGTATCTTGTA 58.779 36.000 0.00 0.00 0.00 2.41
2033 2183 6.145696 AGTTTTTGACGCTCTGTATCTTGTAC 59.854 38.462 0.00 0.00 0.00 2.90
2034 2184 5.386958 TTTGACGCTCTGTATCTTGTACT 57.613 39.130 0.00 0.00 0.00 2.73
2035 2185 4.617808 TGACGCTCTGTATCTTGTACTC 57.382 45.455 0.00 0.00 0.00 2.59
2036 2186 3.377485 TGACGCTCTGTATCTTGTACTCC 59.623 47.826 0.00 0.00 0.00 3.85
2037 2187 2.688958 ACGCTCTGTATCTTGTACTCCC 59.311 50.000 0.00 0.00 0.00 4.30
2038 2188 2.952978 CGCTCTGTATCTTGTACTCCCT 59.047 50.000 0.00 0.00 0.00 4.20
2039 2189 3.003897 CGCTCTGTATCTTGTACTCCCTC 59.996 52.174 0.00 0.00 0.00 4.30
2040 2190 3.319689 GCTCTGTATCTTGTACTCCCTCC 59.680 52.174 0.00 0.00 0.00 4.30
2041 2191 4.537751 CTCTGTATCTTGTACTCCCTCCA 58.462 47.826 0.00 0.00 0.00 3.86
2042 2192 5.144100 CTCTGTATCTTGTACTCCCTCCAT 58.856 45.833 0.00 0.00 0.00 3.41
2043 2193 5.141182 TCTGTATCTTGTACTCCCTCCATC 58.859 45.833 0.00 0.00 0.00 3.51
2044 2194 4.223953 TGTATCTTGTACTCCCTCCATCC 58.776 47.826 0.00 0.00 0.00 3.51
2045 2195 2.176247 TCTTGTACTCCCTCCATCCC 57.824 55.000 0.00 0.00 0.00 3.85
2046 2196 1.364678 TCTTGTACTCCCTCCATCCCA 59.635 52.381 0.00 0.00 0.00 4.37
2047 2197 2.196595 CTTGTACTCCCTCCATCCCAA 58.803 52.381 0.00 0.00 0.00 4.12
2048 2198 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
2049 2199 2.638325 TGTACTCCCTCCATCCCAAAA 58.362 47.619 0.00 0.00 0.00 2.44
2050 2200 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
2051 2201 3.596046 TGTACTCCCTCCATCCCAAAATT 59.404 43.478 0.00 0.00 0.00 1.82
2052 2202 3.388552 ACTCCCTCCATCCCAAAATTC 57.611 47.619 0.00 0.00 0.00 2.17
2053 2203 2.929043 ACTCCCTCCATCCCAAAATTCT 59.071 45.455 0.00 0.00 0.00 2.40
2054 2204 3.337909 ACTCCCTCCATCCCAAAATTCTT 59.662 43.478 0.00 0.00 0.00 2.52
2055 2205 3.703052 CTCCCTCCATCCCAAAATTCTTG 59.297 47.826 0.00 0.00 0.00 3.02
2056 2206 3.077391 TCCCTCCATCCCAAAATTCTTGT 59.923 43.478 0.00 0.00 0.00 3.16
2057 2207 3.448660 CCCTCCATCCCAAAATTCTTGTC 59.551 47.826 0.00 0.00 0.00 3.18
2058 2208 4.347607 CCTCCATCCCAAAATTCTTGTCT 58.652 43.478 0.00 0.00 0.00 3.41
2059 2209 4.774200 CCTCCATCCCAAAATTCTTGTCTT 59.226 41.667 0.00 0.00 0.00 3.01
2060 2210 5.951747 CCTCCATCCCAAAATTCTTGTCTTA 59.048 40.000 0.00 0.00 0.00 2.10
2061 2211 6.096001 CCTCCATCCCAAAATTCTTGTCTTAG 59.904 42.308 0.00 0.00 0.00 2.18
2062 2212 6.789268 TCCATCCCAAAATTCTTGTCTTAGA 58.211 36.000 0.00 0.00 0.00 2.10
2063 2213 7.413446 TCCATCCCAAAATTCTTGTCTTAGAT 58.587 34.615 0.00 0.00 0.00 1.98
2064 2214 7.895429 TCCATCCCAAAATTCTTGTCTTAGATT 59.105 33.333 0.00 0.00 0.00 2.40
2065 2215 8.534496 CCATCCCAAAATTCTTGTCTTAGATTT 58.466 33.333 0.00 0.00 0.00 2.17
2066 2216 9.362539 CATCCCAAAATTCTTGTCTTAGATTTG 57.637 33.333 0.00 0.00 29.84 2.32
2067 2217 8.477419 TCCCAAAATTCTTGTCTTAGATTTGT 57.523 30.769 0.00 0.00 28.79 2.83
2068 2218 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2069 2219 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2077 2227 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2078 2228 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2080 2230 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2081 2231 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2092 2242 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
2093 2243 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
2096 2246 9.807649 AAATACGGATGTATCTAGTTACGTTTT 57.192 29.630 0.00 2.11 40.42 2.43
2099 2249 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
2100 2250 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
2101 2251 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
2102 2252 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
2112 2262 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
2113 2263 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
2114 2264 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
2115 2265 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
2116 2266 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
2132 2282 8.234136 ACATCCGTATCTAGACAAATGTAAGA 57.766 34.615 0.00 1.82 0.00 2.10
2133 2283 8.136165 ACATCCGTATCTAGACAAATGTAAGAC 58.864 37.037 0.00 0.00 0.00 3.01
2134 2284 7.634671 TCCGTATCTAGACAAATGTAAGACA 57.365 36.000 0.00 0.00 0.00 3.41
2135 2285 8.058667 TCCGTATCTAGACAAATGTAAGACAA 57.941 34.615 0.00 0.00 0.00 3.18
2136 2286 7.972277 TCCGTATCTAGACAAATGTAAGACAAC 59.028 37.037 0.00 3.14 0.00 3.32
2137 2287 7.758076 CCGTATCTAGACAAATGTAAGACAACA 59.242 37.037 0.00 0.00 0.00 3.33
2138 2288 9.135843 CGTATCTAGACAAATGTAAGACAACAA 57.864 33.333 0.00 0.00 32.02 2.83
2144 2294 8.647143 AGACAAATGTAAGACAACAATTTTGG 57.353 30.769 7.55 0.00 35.28 3.28
2145 2295 7.710475 AGACAAATGTAAGACAACAATTTTGGG 59.290 33.333 7.55 0.00 35.28 4.12
2146 2296 7.560368 ACAAATGTAAGACAACAATTTTGGGA 58.440 30.769 7.55 0.00 35.28 4.37
2147 2297 7.494298 ACAAATGTAAGACAACAATTTTGGGAC 59.506 33.333 7.55 0.00 35.28 4.46
2148 2298 5.176407 TGTAAGACAACAATTTTGGGACG 57.824 39.130 0.00 0.00 0.00 4.79
2149 2299 3.726291 AAGACAACAATTTTGGGACGG 57.274 42.857 0.00 0.00 0.00 4.79
2150 2300 2.938838 AGACAACAATTTTGGGACGGA 58.061 42.857 0.00 0.00 0.00 4.69
2151 2301 2.884639 AGACAACAATTTTGGGACGGAG 59.115 45.455 0.00 0.00 0.00 4.63
2152 2302 1.960689 ACAACAATTTTGGGACGGAGG 59.039 47.619 0.00 0.00 0.00 4.30
2153 2303 1.272212 CAACAATTTTGGGACGGAGGG 59.728 52.381 0.00 0.00 0.00 4.30
2154 2304 0.774908 ACAATTTTGGGACGGAGGGA 59.225 50.000 0.00 0.00 0.00 4.20
2207 2361 7.593825 AGTTTCTTATATTTCACTTGTGGCAC 58.406 34.615 11.55 11.55 0.00 5.01
2208 2362 5.794687 TCTTATATTTCACTTGTGGCACG 57.205 39.130 13.77 1.69 0.00 5.34
2209 2363 2.919666 ATATTTCACTTGTGGCACGC 57.080 45.000 13.77 0.00 40.62 5.34
2245 2400 3.758023 TGATGTTTTGGTCAGTATGCTGG 59.242 43.478 11.15 0.00 42.78 4.85
2247 2402 3.561143 TGTTTTGGTCAGTATGCTGGTT 58.439 40.909 11.15 0.00 42.78 3.67
2259 2414 6.070824 TCAGTATGCTGGTTGTAGAATTCTGA 60.071 38.462 18.47 1.49 42.78 3.27
2263 2418 6.500684 TGCTGGTTGTAGAATTCTGATTTC 57.499 37.500 18.47 5.74 0.00 2.17
2315 2476 6.315642 GGTTGAATGTTACTAGGGAAGCTAAC 59.684 42.308 0.00 0.00 0.00 2.34
2330 2491 6.531594 GGGAAGCTAACAAAATTAAGATGTGC 59.468 38.462 0.00 0.00 0.00 4.57
2362 2524 5.255397 TGGTCCCAACTCATTTCAGTATT 57.745 39.130 0.00 0.00 0.00 1.89
2449 2613 3.228188 TCTCCTGTGGCTTGTCAATTT 57.772 42.857 0.00 0.00 0.00 1.82
2513 2677 2.103771 GGCAGCATCAACTCTCTGGATA 59.896 50.000 0.00 0.00 0.00 2.59
2524 2688 4.678256 ACTCTCTGGATAACTGAGTGGAA 58.322 43.478 0.00 0.00 43.42 3.53
2545 2709 7.012989 GTGGAACTAGGTTCAACAAACTGTTAT 59.987 37.037 11.65 0.00 43.67 1.89
2592 2756 4.100963 TCAGTAACAGAGTCTGAGCCAAAA 59.899 41.667 26.86 3.70 35.18 2.44
3055 3307 1.300971 CTGCACGACCACATCAAGGG 61.301 60.000 0.00 0.00 0.00 3.95
3130 3382 2.893895 CATGCGCCATGACGAGCT 60.894 61.111 5.30 0.00 43.81 4.09
3266 3527 6.216456 AGAGGGAGGATTTCAAGTACAAGATT 59.784 38.462 0.00 0.00 0.00 2.40
3427 3721 4.025061 CCTCGAGCTGAAATGCTAAATCTG 60.025 45.833 6.99 0.00 44.17 2.90
3492 3790 1.262683 GCTCTTGTCAGCTGTGTCAAC 59.737 52.381 14.67 4.45 36.38 3.18
3499 3797 0.732571 CAGCTGTGTCAACGTGGTTT 59.267 50.000 5.25 0.00 0.00 3.27
3502 3800 2.353579 AGCTGTGTCAACGTGGTTTTAC 59.646 45.455 0.00 0.00 0.00 2.01
3504 3802 3.556775 GCTGTGTCAACGTGGTTTTACTA 59.443 43.478 0.00 0.00 0.00 1.82
3505 3803 4.318546 GCTGTGTCAACGTGGTTTTACTAG 60.319 45.833 0.00 0.00 0.00 2.57
3506 3804 4.121317 TGTGTCAACGTGGTTTTACTAGG 58.879 43.478 0.00 0.00 0.00 3.02
3511 3809 5.985530 GTCAACGTGGTTTTACTAGGTAGTT 59.014 40.000 0.00 0.00 37.73 2.24
3542 7178 8.708742 CATTATCTCTGTTGTTTGTCGAAGTTA 58.291 33.333 0.00 0.00 0.00 2.24
3644 7280 3.405831 TCTTGGAGAGTGCAGATTTGTG 58.594 45.455 0.00 0.00 0.00 3.33
3651 7287 4.252073 AGAGTGCAGATTTGTGAGATGTC 58.748 43.478 0.00 0.00 0.00 3.06
3663 7299 1.381872 AGATGTCTGTAGCCCGGCT 60.382 57.895 18.05 18.05 43.41 5.52
3813 7449 3.314357 GCATGCATGTATTCTTGAGCTCA 59.686 43.478 26.79 13.74 0.00 4.26
3871 7507 5.036737 CCATTTTTCATGGTAGCACGAATC 58.963 41.667 4.06 0.00 34.56 2.52
3919 7877 2.996621 CGTTGGAGCTTTTGAGGAGTAG 59.003 50.000 0.00 0.00 0.00 2.57
3920 7878 3.306088 CGTTGGAGCTTTTGAGGAGTAGA 60.306 47.826 0.00 0.00 0.00 2.59
3934 7892 2.781923 GAGTAGATACTCCCTCCGTCC 58.218 57.143 8.55 0.00 45.33 4.79
3972 7942 2.435372 TTTTTGACACTGCAGGGAGT 57.565 45.000 26.06 15.86 0.00 3.85
3973 7943 3.569194 TTTTTGACACTGCAGGGAGTA 57.431 42.857 26.06 5.11 0.00 2.59
4010 7986 2.989639 CATCTGGGCCGTTGGAGA 59.010 61.111 0.00 0.00 0.00 3.71
4097 8073 6.876789 TCTGAACTTACTGAACACTTGAACAA 59.123 34.615 0.00 0.00 0.00 2.83
4200 8177 6.862608 TCTTTTGCAATGTTACAGCAGTATTG 59.137 34.615 0.00 0.00 39.72 1.90
4222 8199 1.878953 CACACCAAACCTAGCGAAGT 58.121 50.000 0.00 0.00 0.00 3.01
4261 8238 7.062749 AGTGAATTAGTTTGTCAGGTACTCA 57.937 36.000 0.00 0.00 34.60 3.41
4272 8249 4.950475 TGTCAGGTACTCAGGTAATCTCAG 59.050 45.833 0.00 0.00 34.60 3.35
4293 8270 6.899089 TCAGCCTGATTTCCTGATATTGTTA 58.101 36.000 0.00 0.00 31.16 2.41
4313 8290 8.595362 TTGTTATATGAGTTTCAGAGGAGAGA 57.405 34.615 0.00 0.00 0.00 3.10
4314 8291 8.595362 TGTTATATGAGTTTCAGAGGAGAGAA 57.405 34.615 0.00 0.00 0.00 2.87
4315 8292 9.035890 TGTTATATGAGTTTCAGAGGAGAGAAA 57.964 33.333 0.00 0.00 0.00 2.52
4316 8293 9.528018 GTTATATGAGTTTCAGAGGAGAGAAAG 57.472 37.037 0.00 0.00 34.69 2.62
4317 8294 7.732222 ATATGAGTTTCAGAGGAGAGAAAGT 57.268 36.000 0.00 0.00 39.42 2.66
4318 8295 5.207110 TGAGTTTCAGAGGAGAGAAAGTG 57.793 43.478 0.00 0.00 37.48 3.16
4319 8296 3.993736 GAGTTTCAGAGGAGAGAAAGTGC 59.006 47.826 0.00 0.00 37.48 4.40
4320 8297 3.389329 AGTTTCAGAGGAGAGAAAGTGCA 59.611 43.478 0.00 0.00 36.38 4.57
4321 8298 3.393089 TTCAGAGGAGAGAAAGTGCAC 57.607 47.619 9.40 9.40 0.00 4.57
4322 8299 2.319844 TCAGAGGAGAGAAAGTGCACA 58.680 47.619 21.04 0.00 0.00 4.57
4323 8300 2.036475 TCAGAGGAGAGAAAGTGCACAC 59.964 50.000 21.04 10.00 0.00 3.82
4324 8301 2.042464 AGAGGAGAGAAAGTGCACACA 58.958 47.619 21.04 0.00 0.00 3.72
4342 8319 9.702726 GTGCACACACATATTTATTACAGTTAG 57.297 33.333 13.17 0.00 46.61 2.34
4343 8320 9.660180 TGCACACACATATTTATTACAGTTAGA 57.340 29.630 0.00 0.00 0.00 2.10
4356 8333 9.967451 TTATTACAGTTAGAATGTGAAATCCCA 57.033 29.630 0.00 0.00 32.02 4.37
4358 8335 8.506168 TTACAGTTAGAATGTGAAATCCCATC 57.494 34.615 0.00 0.00 32.02 3.51
4359 8336 5.888161 ACAGTTAGAATGTGAAATCCCATCC 59.112 40.000 0.00 0.00 0.00 3.51
4360 8337 5.887598 CAGTTAGAATGTGAAATCCCATCCA 59.112 40.000 0.00 0.00 0.00 3.41
4361 8338 5.888161 AGTTAGAATGTGAAATCCCATCCAC 59.112 40.000 0.00 0.00 0.00 4.02
4362 8339 3.635591 AGAATGTGAAATCCCATCCACC 58.364 45.455 0.00 0.00 0.00 4.61
4363 8340 3.011595 AGAATGTGAAATCCCATCCACCA 59.988 43.478 0.00 0.00 0.00 4.17
4364 8341 2.988636 TGTGAAATCCCATCCACCAA 57.011 45.000 0.00 0.00 0.00 3.67
4365 8342 2.524306 TGTGAAATCCCATCCACCAAC 58.476 47.619 0.00 0.00 0.00 3.77
4366 8343 2.158400 TGTGAAATCCCATCCACCAACA 60.158 45.455 0.00 0.00 0.00 3.33
4367 8344 3.099141 GTGAAATCCCATCCACCAACAT 58.901 45.455 0.00 0.00 0.00 2.71
4368 8345 3.131046 GTGAAATCCCATCCACCAACATC 59.869 47.826 0.00 0.00 0.00 3.06
4369 8346 3.011595 TGAAATCCCATCCACCAACATCT 59.988 43.478 0.00 0.00 0.00 2.90
4370 8347 4.229353 TGAAATCCCATCCACCAACATCTA 59.771 41.667 0.00 0.00 0.00 1.98
4371 8348 4.879295 AATCCCATCCACCAACATCTAA 57.121 40.909 0.00 0.00 0.00 2.10
4372 8349 4.879295 ATCCCATCCACCAACATCTAAA 57.121 40.909 0.00 0.00 0.00 1.85
4373 8350 4.666412 TCCCATCCACCAACATCTAAAA 57.334 40.909 0.00 0.00 0.00 1.52
4374 8351 5.205517 TCCCATCCACCAACATCTAAAAT 57.794 39.130 0.00 0.00 0.00 1.82
4375 8352 4.955450 TCCCATCCACCAACATCTAAAATG 59.045 41.667 0.00 0.00 0.00 2.32
4376 8353 4.441913 CCCATCCACCAACATCTAAAATGC 60.442 45.833 0.00 0.00 0.00 3.56
4377 8354 4.160065 CCATCCACCAACATCTAAAATGCA 59.840 41.667 0.00 0.00 0.00 3.96
4378 8355 5.337410 CCATCCACCAACATCTAAAATGCAA 60.337 40.000 0.00 0.00 0.00 4.08
4379 8356 5.389859 TCCACCAACATCTAAAATGCAAG 57.610 39.130 0.00 0.00 0.00 4.01
4380 8357 4.832266 TCCACCAACATCTAAAATGCAAGT 59.168 37.500 0.00 0.00 0.00 3.16
4381 8358 5.048083 TCCACCAACATCTAAAATGCAAGTC 60.048 40.000 0.00 0.00 0.00 3.01
4382 8359 5.047802 CCACCAACATCTAAAATGCAAGTCT 60.048 40.000 0.00 0.00 0.00 3.24
4383 8360 6.088824 CACCAACATCTAAAATGCAAGTCTC 58.911 40.000 0.00 0.00 0.00 3.36
4384 8361 5.769662 ACCAACATCTAAAATGCAAGTCTCA 59.230 36.000 0.00 0.00 0.00 3.27
4385 8362 6.072286 ACCAACATCTAAAATGCAAGTCTCAG 60.072 38.462 0.00 0.00 0.00 3.35
4386 8363 6.320171 CAACATCTAAAATGCAAGTCTCAGG 58.680 40.000 0.00 0.00 0.00 3.86
4387 8364 5.809001 ACATCTAAAATGCAAGTCTCAGGA 58.191 37.500 0.00 0.00 0.00 3.86
4388 8365 5.645497 ACATCTAAAATGCAAGTCTCAGGAC 59.355 40.000 0.00 0.00 42.41 3.85
4401 8378 5.584253 GTCTCAGGACTATACAGAAAGCA 57.416 43.478 0.00 0.00 39.24 3.91
4402 8379 5.967088 GTCTCAGGACTATACAGAAAGCAA 58.033 41.667 0.00 0.00 39.24 3.91
4403 8380 6.039616 GTCTCAGGACTATACAGAAAGCAAG 58.960 44.000 0.00 0.00 39.24 4.01
4404 8381 5.952347 TCTCAGGACTATACAGAAAGCAAGA 59.048 40.000 0.00 0.00 0.00 3.02
4405 8382 6.096141 TCTCAGGACTATACAGAAAGCAAGAG 59.904 42.308 0.00 0.00 0.00 2.85
4406 8383 5.127845 TCAGGACTATACAGAAAGCAAGAGG 59.872 44.000 0.00 0.00 0.00 3.69
4407 8384 4.123506 GGACTATACAGAAAGCAAGAGGC 58.876 47.826 0.00 0.00 45.30 4.70
4416 8393 4.481195 GCAAGAGGCACAGAACCA 57.519 55.556 0.00 0.00 43.97 3.67
4417 8394 1.952263 GCAAGAGGCACAGAACCAC 59.048 57.895 0.00 0.00 43.97 4.16
4418 8395 1.518903 GCAAGAGGCACAGAACCACC 61.519 60.000 0.00 0.00 43.97 4.61
4419 8396 0.109342 CAAGAGGCACAGAACCACCT 59.891 55.000 0.00 0.00 34.43 4.00
4420 8397 0.846693 AAGAGGCACAGAACCACCTT 59.153 50.000 0.00 0.00 30.95 3.50
4421 8398 0.398318 AGAGGCACAGAACCACCTTC 59.602 55.000 0.00 0.00 30.95 3.46
4422 8399 0.606673 GAGGCACAGAACCACCTTCC 60.607 60.000 0.00 0.00 30.95 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 117 4.379243 CTCACCTTGTCGGCGGCT 62.379 66.667 14.51 0.00 35.61 5.52
109 131 1.965414 TTGGATGGACTAAGCCCTCA 58.035 50.000 0.00 0.00 0.00 3.86
118 140 0.255890 CCGTTGGGATTGGATGGACT 59.744 55.000 0.00 0.00 34.06 3.85
124 146 2.267642 CGAGCCGTTGGGATTGGA 59.732 61.111 0.00 0.00 34.06 3.53
127 149 2.240162 GAGGACGAGCCGTTGGGATT 62.240 60.000 1.80 0.00 41.37 3.01
276 319 0.463620 CTAGAGCACAAGGAGGAGCC 59.536 60.000 0.00 0.00 0.00 4.70
331 374 3.088914 GCATGATGCGTGCGTACA 58.911 55.556 0.00 0.00 36.64 2.90
408 456 4.758251 TCCGATGGTGCCACGCAG 62.758 66.667 0.00 0.00 40.08 5.18
595 665 1.924320 CTCCGACGCGAACTCTTCCT 61.924 60.000 15.93 0.00 0.00 3.36
722 823 1.767681 GCCTCATCCACTTCCATCTCT 59.232 52.381 0.00 0.00 0.00 3.10
782 885 2.337879 GACAGTGTGTGGAAGGGCCA 62.338 60.000 6.18 0.00 46.96 5.36
894 999 2.109739 ACAAAGTGAACACGCCGCA 61.110 52.632 0.00 0.00 36.20 5.69
916 1022 1.408702 AGTGAAAAATGCGTTGGTGCT 59.591 42.857 0.00 0.00 35.36 4.40
919 1025 3.791973 TTGAGTGAAAAATGCGTTGGT 57.208 38.095 0.00 0.00 0.00 3.67
933 1039 6.070824 ACCCATTTTAGGCCTAAATTTGAGTG 60.071 38.462 33.16 23.92 35.27 3.51
956 1062 6.908870 AAAATGTCTTTGCTTTTTCTCACC 57.091 33.333 0.00 0.00 0.00 4.02
977 1083 4.583489 TGTCCGTGCCCACTAAAATAAAAA 59.417 37.500 0.00 0.00 0.00 1.94
978 1084 4.142790 TGTCCGTGCCCACTAAAATAAAA 58.857 39.130 0.00 0.00 0.00 1.52
979 1085 3.752665 TGTCCGTGCCCACTAAAATAAA 58.247 40.909 0.00 0.00 0.00 1.40
980 1086 3.420300 TGTCCGTGCCCACTAAAATAA 57.580 42.857 0.00 0.00 0.00 1.40
981 1087 3.275143 CATGTCCGTGCCCACTAAAATA 58.725 45.455 0.00 0.00 0.00 1.40
982 1088 2.091541 CATGTCCGTGCCCACTAAAAT 58.908 47.619 0.00 0.00 0.00 1.82
983 1089 1.529226 CATGTCCGTGCCCACTAAAA 58.471 50.000 0.00 0.00 0.00 1.52
984 1090 0.322098 CCATGTCCGTGCCCACTAAA 60.322 55.000 0.00 0.00 0.00 1.85
985 1091 1.298340 CCATGTCCGTGCCCACTAA 59.702 57.895 0.00 0.00 0.00 2.24
986 1092 2.665089 CCCATGTCCGTGCCCACTA 61.665 63.158 0.00 0.00 0.00 2.74
987 1093 4.033776 CCCATGTCCGTGCCCACT 62.034 66.667 0.00 0.00 0.00 4.00
988 1094 4.344865 ACCCATGTCCGTGCCCAC 62.345 66.667 0.00 0.00 0.00 4.61
989 1095 4.343323 CACCCATGTCCGTGCCCA 62.343 66.667 0.00 0.00 0.00 5.36
991 1097 4.028490 TCCACCCATGTCCGTGCC 62.028 66.667 0.00 0.00 0.00 5.01
992 1098 2.746277 GTCCACCCATGTCCGTGC 60.746 66.667 0.00 0.00 0.00 5.34
993 1099 2.434185 CGTCCACCCATGTCCGTG 60.434 66.667 0.00 0.00 0.00 4.94
994 1100 1.760479 TTTCGTCCACCCATGTCCGT 61.760 55.000 0.00 0.00 0.00 4.69
995 1101 0.392461 ATTTCGTCCACCCATGTCCG 60.392 55.000 0.00 0.00 0.00 4.79
996 1102 1.094785 CATTTCGTCCACCCATGTCC 58.905 55.000 0.00 0.00 0.00 4.02
997 1103 1.094785 CCATTTCGTCCACCCATGTC 58.905 55.000 0.00 0.00 0.00 3.06
998 1104 0.323360 CCCATTTCGTCCACCCATGT 60.323 55.000 0.00 0.00 0.00 3.21
999 1105 0.323360 ACCCATTTCGTCCACCCATG 60.323 55.000 0.00 0.00 0.00 3.66
1000 1106 0.034477 GACCCATTTCGTCCACCCAT 60.034 55.000 0.00 0.00 0.00 4.00
1001 1107 1.377229 GACCCATTTCGTCCACCCA 59.623 57.895 0.00 0.00 0.00 4.51
1002 1108 0.958876 GTGACCCATTTCGTCCACCC 60.959 60.000 0.00 0.00 0.00 4.61
1003 1109 0.036306 AGTGACCCATTTCGTCCACC 59.964 55.000 0.00 0.00 0.00 4.61
1004 1110 1.439679 GAGTGACCCATTTCGTCCAC 58.560 55.000 0.00 0.00 0.00 4.02
1005 1111 0.323629 GGAGTGACCCATTTCGTCCA 59.676 55.000 0.00 0.00 0.00 4.02
1006 1112 0.739813 CGGAGTGACCCATTTCGTCC 60.740 60.000 0.00 0.00 34.64 4.79
1007 1113 0.037605 ACGGAGTGACCCATTTCGTC 60.038 55.000 0.00 0.00 42.51 4.20
1008 1114 0.395312 AACGGAGTGACCCATTTCGT 59.605 50.000 0.00 0.00 45.00 3.85
1009 1115 0.796312 CAACGGAGTGACCCATTTCG 59.204 55.000 0.00 0.00 45.00 3.46
1019 1125 1.569493 CGGTTTGAGCAACGGAGTG 59.431 57.895 0.00 0.00 45.00 3.51
1021 1127 2.556287 GCGGTTTGAGCAACGGAG 59.444 61.111 0.00 0.00 37.81 4.63
1022 1128 2.102109 TAGGCGGTTTGAGCAACGGA 62.102 55.000 0.00 0.00 37.81 4.69
1023 1129 1.231958 TTAGGCGGTTTGAGCAACGG 61.232 55.000 0.00 0.00 38.46 4.44
1024 1130 0.165944 CTTAGGCGGTTTGAGCAACG 59.834 55.000 0.00 0.00 36.05 4.10
1025 1131 0.521735 CCTTAGGCGGTTTGAGCAAC 59.478 55.000 0.00 0.00 36.08 4.17
1026 1132 0.398696 TCCTTAGGCGGTTTGAGCAA 59.601 50.000 0.00 0.00 36.08 3.91
1027 1133 0.398696 TTCCTTAGGCGGTTTGAGCA 59.601 50.000 0.00 0.00 36.08 4.26
1028 1134 1.530323 TTTCCTTAGGCGGTTTGAGC 58.470 50.000 0.00 0.00 0.00 4.26
1029 1135 3.188667 GTCTTTTCCTTAGGCGGTTTGAG 59.811 47.826 0.00 0.00 0.00 3.02
1030 1136 3.143728 GTCTTTTCCTTAGGCGGTTTGA 58.856 45.455 0.00 0.00 0.00 2.69
1031 1137 2.095919 CGTCTTTTCCTTAGGCGGTTTG 60.096 50.000 0.00 0.00 37.10 2.93
1032 1138 2.148768 CGTCTTTTCCTTAGGCGGTTT 58.851 47.619 0.00 0.00 37.10 3.27
1033 1139 1.804601 CGTCTTTTCCTTAGGCGGTT 58.195 50.000 0.00 0.00 37.10 4.44
1034 1140 3.527434 CGTCTTTTCCTTAGGCGGT 57.473 52.632 0.00 0.00 37.10 5.68
1036 1142 2.202566 GATCCGTCTTTTCCTTAGGCG 58.797 52.381 0.00 0.00 40.25 5.52
1052 1158 5.233988 CGGTTTCTAGATGGAGAATGATCC 58.766 45.833 0.00 0.00 35.41 3.36
1082 1188 2.776913 CCCGTCGAGCTCTCTTCCC 61.777 68.421 12.85 0.00 0.00 3.97
1175 1293 1.921230 GAGAGAGAAATGCGTCCGAAC 59.079 52.381 0.00 0.00 0.00 3.95
1176 1294 1.135083 GGAGAGAGAAATGCGTCCGAA 60.135 52.381 0.00 0.00 0.00 4.30
1312 1430 2.294078 CCTTCCCTTCCGCACCTCT 61.294 63.158 0.00 0.00 0.00 3.69
1426 1550 2.033151 CGCTTCGAATCGGGGAAATTAC 60.033 50.000 13.33 0.00 0.00 1.89
1525 1656 8.840321 AGAAGTCCATATCCAAATTTTGATACG 58.160 33.333 12.75 6.31 0.00 3.06
1548 1680 5.012458 TCAGAGATTTCAAGGCTCTTCAGAA 59.988 40.000 0.00 0.00 36.91 3.02
1737 1887 2.058595 GGAGGAGGACGCAGCCTTA 61.059 63.158 0.00 0.00 38.73 2.69
1843 1993 4.074970 AGGTGTAATCAGACCTGCTTTTG 58.925 43.478 0.00 0.00 46.41 2.44
1844 1994 4.373156 AGGTGTAATCAGACCTGCTTTT 57.627 40.909 0.00 0.00 46.41 2.27
1851 2001 7.235812 AGGATTAGGAATAGGTGTAATCAGACC 59.764 40.741 0.00 0.00 38.41 3.85
1852 2002 8.196378 AGGATTAGGAATAGGTGTAATCAGAC 57.804 38.462 0.00 0.00 34.76 3.51
1853 2003 9.892444 TTAGGATTAGGAATAGGTGTAATCAGA 57.108 33.333 0.00 0.00 34.76 3.27
1869 2019 9.640963 CGTCCTTACATTCTATTTAGGATTAGG 57.359 37.037 0.00 0.00 34.57 2.69
1873 2023 9.978044 GTAACGTCCTTACATTCTATTTAGGAT 57.022 33.333 0.00 0.00 35.63 3.24
1874 2024 8.970020 TGTAACGTCCTTACATTCTATTTAGGA 58.030 33.333 0.00 0.00 39.93 2.94
1875 2025 9.245962 CTGTAACGTCCTTACATTCTATTTAGG 57.754 37.037 0.00 0.00 43.15 2.69
1878 2028 7.491696 GCTCTGTAACGTCCTTACATTCTATTT 59.508 37.037 0.00 0.00 43.15 1.40
1879 2029 6.979238 GCTCTGTAACGTCCTTACATTCTATT 59.021 38.462 0.00 0.00 43.15 1.73
1880 2030 6.461231 GGCTCTGTAACGTCCTTACATTCTAT 60.461 42.308 0.00 0.00 43.15 1.98
1881 2031 5.163581 GGCTCTGTAACGTCCTTACATTCTA 60.164 44.000 0.00 0.00 43.15 2.10
1882 2032 4.381718 GGCTCTGTAACGTCCTTACATTCT 60.382 45.833 0.00 0.00 43.15 2.40
1883 2033 3.864003 GGCTCTGTAACGTCCTTACATTC 59.136 47.826 0.00 0.00 43.15 2.67
1884 2034 3.369157 GGGCTCTGTAACGTCCTTACATT 60.369 47.826 0.00 0.00 43.15 2.71
1885 2035 2.167900 GGGCTCTGTAACGTCCTTACAT 59.832 50.000 0.00 0.00 43.15 2.29
1886 2036 1.547372 GGGCTCTGTAACGTCCTTACA 59.453 52.381 0.00 0.00 42.13 2.41
1887 2037 1.823610 AGGGCTCTGTAACGTCCTTAC 59.176 52.381 0.00 0.00 36.06 2.34
1888 2038 1.822990 CAGGGCTCTGTAACGTCCTTA 59.177 52.381 5.06 0.00 36.30 2.69
1889 2039 0.608640 CAGGGCTCTGTAACGTCCTT 59.391 55.000 5.06 0.00 36.30 3.36
1890 2040 2.277858 CAGGGCTCTGTAACGTCCT 58.722 57.895 5.06 0.00 36.30 3.85
1891 2041 4.913126 CAGGGCTCTGTAACGTCC 57.087 61.111 5.06 0.00 36.30 4.79
1899 2049 1.025113 TCGTCGAGTACAGGGCTCTG 61.025 60.000 13.44 13.44 46.10 3.35
1931 2081 7.662604 AAGCATTCAATTCAACAAAGGAATC 57.337 32.000 0.00 0.00 34.02 2.52
1981 2131 4.391155 ACACGAAACTAAATTGCAGGGTA 58.609 39.130 0.00 0.00 0.00 3.69
2010 2160 6.220930 AGTACAAGATACAGAGCGTCAAAAA 58.779 36.000 0.00 0.00 0.00 1.94
2014 2164 3.377485 GGAGTACAAGATACAGAGCGTCA 59.623 47.826 0.00 0.00 0.00 4.35
2019 2169 4.537751 TGGAGGGAGTACAAGATACAGAG 58.462 47.826 0.00 0.00 0.00 3.35
2021 2171 4.282195 GGATGGAGGGAGTACAAGATACAG 59.718 50.000 0.00 0.00 0.00 2.74
2030 2180 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
2031 2181 4.119155 AGAATTTTGGGATGGAGGGAGTA 58.881 43.478 0.00 0.00 0.00 2.59
2032 2182 2.929043 AGAATTTTGGGATGGAGGGAGT 59.071 45.455 0.00 0.00 0.00 3.85
2033 2183 3.677156 AGAATTTTGGGATGGAGGGAG 57.323 47.619 0.00 0.00 0.00 4.30
2034 2184 3.077391 ACAAGAATTTTGGGATGGAGGGA 59.923 43.478 5.68 0.00 0.00 4.20
2035 2185 3.444029 ACAAGAATTTTGGGATGGAGGG 58.556 45.455 5.68 0.00 0.00 4.30
2036 2186 4.347607 AGACAAGAATTTTGGGATGGAGG 58.652 43.478 5.68 0.00 0.00 4.30
2037 2187 5.990120 AAGACAAGAATTTTGGGATGGAG 57.010 39.130 5.68 0.00 0.00 3.86
2038 2188 6.789268 TCTAAGACAAGAATTTTGGGATGGA 58.211 36.000 5.68 0.00 0.00 3.41
2039 2189 7.651027 ATCTAAGACAAGAATTTTGGGATGG 57.349 36.000 5.68 0.00 0.00 3.51
2040 2190 9.362539 CAAATCTAAGACAAGAATTTTGGGATG 57.637 33.333 5.68 0.00 28.49 3.51
2041 2191 9.093458 ACAAATCTAAGACAAGAATTTTGGGAT 57.907 29.630 0.00 0.00 33.04 3.85
2042 2192 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2043 2193 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2051 2201 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2052 2202 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2054 2204 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2055 2205 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2066 2216 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
2067 2217 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
2070 2220 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
2073 2223 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
2074 2224 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
2075 2225 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
2076 2226 9.578439 AACACTAAAACGTAACTAGATACATCC 57.422 33.333 10.40 0.00 0.00 3.51
2086 2236 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
2087 2237 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
2088 2238 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
2089 2239 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
2090 2240 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
2091 2241 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
2106 2256 9.346005 TCTTACATTTGTCTAGATACGGATGTA 57.654 33.333 11.94 11.94 32.86 2.29
2107 2257 8.136165 GTCTTACATTTGTCTAGATACGGATGT 58.864 37.037 13.29 13.29 34.19 3.06
2108 2258 8.135529 TGTCTTACATTTGTCTAGATACGGATG 58.864 37.037 0.00 0.85 0.00 3.51
2109 2259 8.234136 TGTCTTACATTTGTCTAGATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
2110 2260 7.634671 TGTCTTACATTTGTCTAGATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
2111 2261 7.758076 TGTTGTCTTACATTTGTCTAGATACGG 59.242 37.037 0.00 0.00 0.00 4.02
2112 2262 8.683550 TGTTGTCTTACATTTGTCTAGATACG 57.316 34.615 0.00 0.00 0.00 3.06
2118 2268 9.743057 CCAAAATTGTTGTCTTACATTTGTCTA 57.257 29.630 0.00 0.00 31.09 2.59
2119 2269 7.710475 CCCAAAATTGTTGTCTTACATTTGTCT 59.290 33.333 0.00 0.00 31.09 3.41
2120 2270 7.708752 TCCCAAAATTGTTGTCTTACATTTGTC 59.291 33.333 0.00 0.00 31.09 3.18
2121 2271 7.494298 GTCCCAAAATTGTTGTCTTACATTTGT 59.506 33.333 0.00 0.00 31.09 2.83
2122 2272 7.306515 CGTCCCAAAATTGTTGTCTTACATTTG 60.307 37.037 0.00 0.00 32.07 2.32
2123 2273 6.699642 CGTCCCAAAATTGTTGTCTTACATTT 59.300 34.615 0.00 0.00 0.00 2.32
2124 2274 6.212955 CGTCCCAAAATTGTTGTCTTACATT 58.787 36.000 0.00 0.00 0.00 2.71
2125 2275 5.278758 CCGTCCCAAAATTGTTGTCTTACAT 60.279 40.000 0.00 0.00 0.00 2.29
2126 2276 4.036971 CCGTCCCAAAATTGTTGTCTTACA 59.963 41.667 0.00 0.00 0.00 2.41
2127 2277 4.276431 TCCGTCCCAAAATTGTTGTCTTAC 59.724 41.667 0.00 0.00 0.00 2.34
2128 2278 4.462133 TCCGTCCCAAAATTGTTGTCTTA 58.538 39.130 0.00 0.00 0.00 2.10
2129 2279 3.292460 TCCGTCCCAAAATTGTTGTCTT 58.708 40.909 0.00 0.00 0.00 3.01
2130 2280 2.884639 CTCCGTCCCAAAATTGTTGTCT 59.115 45.455 0.00 0.00 0.00 3.41
2131 2281 2.030274 CCTCCGTCCCAAAATTGTTGTC 60.030 50.000 0.00 0.00 0.00 3.18
2132 2282 1.960689 CCTCCGTCCCAAAATTGTTGT 59.039 47.619 0.00 0.00 0.00 3.32
2133 2283 1.272212 CCCTCCGTCCCAAAATTGTTG 59.728 52.381 0.00 0.00 0.00 3.33
2134 2284 1.146152 TCCCTCCGTCCCAAAATTGTT 59.854 47.619 0.00 0.00 0.00 2.83
2135 2285 0.774908 TCCCTCCGTCCCAAAATTGT 59.225 50.000 0.00 0.00 0.00 2.71
2136 2286 1.271926 ACTCCCTCCGTCCCAAAATTG 60.272 52.381 0.00 0.00 0.00 2.32
2137 2287 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2138 2288 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2139 2289 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
2140 2290 1.007963 AGATACTCCCTCCGTCCCAAA 59.992 52.381 0.00 0.00 0.00 3.28
2141 2291 0.635009 AGATACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
2142 2292 0.635009 AAGATACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
2143 2293 1.041437 CAAGATACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
2144 2294 1.777941 ACAAGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2145 2295 3.890147 ACATACAAGATACTCCCTCCGTC 59.110 47.826 0.00 0.00 0.00 4.79
2146 2296 3.912248 ACATACAAGATACTCCCTCCGT 58.088 45.455 0.00 0.00 0.00 4.69
2147 2297 4.341235 TCAACATACAAGATACTCCCTCCG 59.659 45.833 0.00 0.00 0.00 4.63
2148 2298 5.871396 TCAACATACAAGATACTCCCTCC 57.129 43.478 0.00 0.00 0.00 4.30
2149 2299 6.821388 ACATCAACATACAAGATACTCCCTC 58.179 40.000 0.00 0.00 0.00 4.30
2150 2300 6.814954 ACATCAACATACAAGATACTCCCT 57.185 37.500 0.00 0.00 0.00 4.20
2151 2301 7.047891 TCAACATCAACATACAAGATACTCCC 58.952 38.462 0.00 0.00 0.00 4.30
2152 2302 8.554528 CATCAACATCAACATACAAGATACTCC 58.445 37.037 0.00 0.00 0.00 3.85
2153 2303 9.102757 ACATCAACATCAACATACAAGATACTC 57.897 33.333 0.00 0.00 0.00 2.59
2189 2343 2.680841 GGCGTGCCACAAGTGAAATATA 59.319 45.455 5.89 0.00 35.81 0.86
2203 2357 6.577957 ATCATAATTGATGCAAGGCGTGCC 62.578 45.833 22.31 8.72 42.53 5.01
2219 2373 7.886629 AGCATACTGACCAAAACATCATAAT 57.113 32.000 0.00 0.00 0.00 1.28
2245 2400 8.171840 CGAAGGAAGAAATCAGAATTCTACAAC 58.828 37.037 7.86 0.00 36.14 3.32
2247 2402 7.386851 ACGAAGGAAGAAATCAGAATTCTACA 58.613 34.615 7.86 0.00 36.14 2.74
2259 2414 6.234177 ACTGAAATGAGACGAAGGAAGAAAT 58.766 36.000 0.00 0.00 0.00 2.17
2263 2418 5.470368 TGTACTGAAATGAGACGAAGGAAG 58.530 41.667 0.00 0.00 0.00 3.46
2330 2491 2.684881 GAGTTGGGACCAATATGTGCAG 59.315 50.000 7.10 0.00 38.28 4.41
2362 2524 8.946085 CCTAAATGCAAAGTTACTGACAGATAA 58.054 33.333 10.08 1.66 0.00 1.75
2408 2570 6.371548 GGAGAAAATATATGTCCGCATTGCTA 59.628 38.462 7.12 0.00 36.58 3.49
2449 2613 6.840527 TGCATCATAGATTCTTGGTAATGGA 58.159 36.000 0.00 0.00 0.00 3.41
2513 2677 4.163458 TGTTGAACCTAGTTCCACTCAGTT 59.837 41.667 11.52 0.00 41.35 3.16
2524 2688 7.717875 TGCTAATAACAGTTTGTTGAACCTAGT 59.282 33.333 4.78 0.00 41.30 2.57
2592 2756 6.672593 TGACTAGATAATGGGCTTCCAAAAT 58.327 36.000 0.00 0.00 44.86 1.82
2843 3083 2.674380 GTGTTGGCAGGCCCAGAG 60.674 66.667 8.02 0.00 46.39 3.35
2852 3092 2.519063 CTGCAGTGGGTGTTGGCA 60.519 61.111 5.25 0.00 0.00 4.92
3040 3292 1.537889 TCCCCCTTGATGTGGTCGT 60.538 57.895 0.00 0.00 0.00 4.34
3130 3382 3.804329 GGGATACAAGGCGGGCCA 61.804 66.667 12.97 0.00 37.00 5.36
3427 3721 9.738832 GAATTCTTCTACTACCAGATTGAGTAC 57.261 37.037 0.00 0.00 0.00 2.73
3467 3761 0.604780 ACAGCTGACAAGAGCGCAAT 60.605 50.000 23.35 0.00 44.24 3.56
3492 3790 7.816640 TGTACTAACTACCTAGTAAAACCACG 58.183 38.462 0.00 0.00 36.40 4.94
3504 3802 9.476928 ACAACAGAGATAATGTACTAACTACCT 57.523 33.333 0.00 0.00 0.00 3.08
3511 3809 8.517056 TCGACAAACAACAGAGATAATGTACTA 58.483 33.333 0.00 0.00 0.00 1.82
3644 7280 1.068250 GCCGGGCTACAGACATCTC 59.932 63.158 12.87 0.00 0.00 2.75
3651 7287 1.068250 GCTCTTAGCCGGGCTACAG 59.932 63.158 27.78 24.43 41.12 2.74
3813 7449 0.172578 TGTCGCTTCACGGATCGATT 59.827 50.000 0.00 0.00 43.89 3.34
3919 7877 2.599408 TATGGGACGGAGGGAGTATC 57.401 55.000 0.00 0.00 0.00 2.24
3920 7878 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
3957 7927 2.597578 TACTACTCCCTGCAGTGTCA 57.402 50.000 13.81 0.00 0.00 3.58
3958 7928 3.955650 TTTACTACTCCCTGCAGTGTC 57.044 47.619 13.81 0.00 0.00 3.67
3959 7929 5.024118 ACTATTTACTACTCCCTGCAGTGT 58.976 41.667 13.81 10.84 0.00 3.55
3960 7930 5.127194 TCACTATTTACTACTCCCTGCAGTG 59.873 44.000 13.81 0.00 0.00 3.66
3962 7932 5.854010 TCACTATTTACTACTCCCTGCAG 57.146 43.478 6.78 6.78 0.00 4.41
3963 7933 6.408092 CCAATCACTATTTACTACTCCCTGCA 60.408 42.308 0.00 0.00 0.00 4.41
3964 7934 5.992217 CCAATCACTATTTACTACTCCCTGC 59.008 44.000 0.00 0.00 0.00 4.85
3966 7936 7.039644 CGATCCAATCACTATTTACTACTCCCT 60.040 40.741 0.00 0.00 0.00 4.20
3968 7938 6.586844 GCGATCCAATCACTATTTACTACTCC 59.413 42.308 0.00 0.00 0.00 3.85
3969 7939 7.145985 TGCGATCCAATCACTATTTACTACTC 58.854 38.462 0.00 0.00 0.00 2.59
3970 7940 7.050970 TGCGATCCAATCACTATTTACTACT 57.949 36.000 0.00 0.00 0.00 2.57
3971 7941 7.815068 AGATGCGATCCAATCACTATTTACTAC 59.185 37.037 5.37 0.00 0.00 2.73
3972 7942 7.814587 CAGATGCGATCCAATCACTATTTACTA 59.185 37.037 5.37 0.00 0.00 1.82
3973 7943 6.648310 CAGATGCGATCCAATCACTATTTACT 59.352 38.462 5.37 0.00 0.00 2.24
4010 7986 2.198426 CCTGGCAACACCCCTTGT 59.802 61.111 0.00 0.00 46.17 3.16
4097 8073 0.385473 GCAACATTACTGCAACGCGT 60.385 50.000 5.58 5.58 39.69 6.01
4161 8137 9.199982 ACATTGCAAAAGAGTTTTCTGAATATG 57.800 29.630 1.71 0.00 32.79 1.78
4200 8177 0.882927 TCGCTAGGTTTGGTGTGCAC 60.883 55.000 10.75 10.75 0.00 4.57
4261 8238 4.043596 AGGAAATCAGGCTGAGATTACCT 58.956 43.478 23.24 20.44 34.78 3.08
4272 8249 9.453572 TCATATAACAATATCAGGAAATCAGGC 57.546 33.333 0.00 0.00 0.00 4.85
4293 8270 7.555087 CACTTTCTCTCCTCTGAAACTCATAT 58.445 38.462 0.00 0.00 0.00 1.78
4304 8281 2.042464 TGTGTGCACTTTCTCTCCTCT 58.958 47.619 19.41 0.00 0.00 3.69
4311 8288 9.008965 TGTAATAAATATGTGTGTGCACTTTCT 57.991 29.630 19.41 1.70 45.44 2.52
4312 8289 9.277565 CTGTAATAAATATGTGTGTGCACTTTC 57.722 33.333 19.41 9.15 45.44 2.62
4313 8290 8.792633 ACTGTAATAAATATGTGTGTGCACTTT 58.207 29.630 19.41 10.52 45.44 2.66
4314 8291 8.335532 ACTGTAATAAATATGTGTGTGCACTT 57.664 30.769 19.41 3.60 45.44 3.16
4315 8292 7.921786 ACTGTAATAAATATGTGTGTGCACT 57.078 32.000 19.41 0.00 45.44 4.40
4316 8293 9.702726 CTAACTGTAATAAATATGTGTGTGCAC 57.297 33.333 10.75 10.75 45.44 4.57
4317 8294 9.660180 TCTAACTGTAATAAATATGTGTGTGCA 57.340 29.630 0.00 0.00 0.00 4.57
4330 8307 9.967451 TGGGATTTCACATTCTAACTGTAATAA 57.033 29.630 0.00 0.00 0.00 1.40
4332 8309 9.125026 GATGGGATTTCACATTCTAACTGTAAT 57.875 33.333 0.00 0.00 40.68 1.89
4333 8310 7.556275 GGATGGGATTTCACATTCTAACTGTAA 59.444 37.037 0.00 0.00 40.68 2.41
4334 8311 7.054124 GGATGGGATTTCACATTCTAACTGTA 58.946 38.462 0.00 0.00 40.68 2.74
4335 8312 5.888161 GGATGGGATTTCACATTCTAACTGT 59.112 40.000 0.00 0.00 40.68 3.55
4336 8313 5.887598 TGGATGGGATTTCACATTCTAACTG 59.112 40.000 2.87 0.00 40.68 3.16
4337 8314 5.888161 GTGGATGGGATTTCACATTCTAACT 59.112 40.000 2.87 0.00 40.68 2.24
4338 8315 5.067805 GGTGGATGGGATTTCACATTCTAAC 59.932 44.000 2.87 0.00 40.68 2.34
4339 8316 5.200483 GGTGGATGGGATTTCACATTCTAA 58.800 41.667 2.87 0.00 40.68 2.10
4340 8317 4.229353 TGGTGGATGGGATTTCACATTCTA 59.771 41.667 2.87 0.00 40.68 2.10
4341 8318 3.011595 TGGTGGATGGGATTTCACATTCT 59.988 43.478 2.87 0.00 40.68 2.40
4342 8319 3.364549 TGGTGGATGGGATTTCACATTC 58.635 45.455 0.00 0.00 40.68 2.67
4343 8320 3.471430 TGGTGGATGGGATTTCACATT 57.529 42.857 0.00 0.00 40.68 2.71
4344 8321 3.099141 GTTGGTGGATGGGATTTCACAT 58.901 45.455 0.00 0.00 43.87 3.21
4345 8322 2.158400 TGTTGGTGGATGGGATTTCACA 60.158 45.455 0.00 0.00 32.29 3.58
4346 8323 2.524306 TGTTGGTGGATGGGATTTCAC 58.476 47.619 0.00 0.00 0.00 3.18
4347 8324 2.988636 TGTTGGTGGATGGGATTTCA 57.011 45.000 0.00 0.00 0.00 2.69
4348 8325 3.635591 AGATGTTGGTGGATGGGATTTC 58.364 45.455 0.00 0.00 0.00 2.17
4349 8326 3.763557 AGATGTTGGTGGATGGGATTT 57.236 42.857 0.00 0.00 0.00 2.17
4350 8327 4.879295 TTAGATGTTGGTGGATGGGATT 57.121 40.909 0.00 0.00 0.00 3.01
4351 8328 4.879295 TTTAGATGTTGGTGGATGGGAT 57.121 40.909 0.00 0.00 0.00 3.85
4352 8329 4.666412 TTTTAGATGTTGGTGGATGGGA 57.334 40.909 0.00 0.00 0.00 4.37
4353 8330 4.441913 GCATTTTAGATGTTGGTGGATGGG 60.442 45.833 0.00 0.00 0.00 4.00
4354 8331 4.160065 TGCATTTTAGATGTTGGTGGATGG 59.840 41.667 0.00 0.00 0.00 3.51
4355 8332 5.327616 TGCATTTTAGATGTTGGTGGATG 57.672 39.130 0.00 0.00 0.00 3.51
4356 8333 5.481473 ACTTGCATTTTAGATGTTGGTGGAT 59.519 36.000 0.00 0.00 0.00 3.41
4357 8334 4.832266 ACTTGCATTTTAGATGTTGGTGGA 59.168 37.500 0.00 0.00 0.00 4.02
4358 8335 5.047802 AGACTTGCATTTTAGATGTTGGTGG 60.048 40.000 0.00 0.00 0.00 4.61
4359 8336 6.017400 AGACTTGCATTTTAGATGTTGGTG 57.983 37.500 0.00 0.00 0.00 4.17
4360 8337 5.769662 TGAGACTTGCATTTTAGATGTTGGT 59.230 36.000 0.00 0.00 0.00 3.67
4361 8338 6.258230 TGAGACTTGCATTTTAGATGTTGG 57.742 37.500 0.00 0.00 0.00 3.77
4362 8339 6.149973 TCCTGAGACTTGCATTTTAGATGTTG 59.850 38.462 0.00 0.00 0.00 3.33
4363 8340 6.150140 GTCCTGAGACTTGCATTTTAGATGTT 59.850 38.462 0.00 0.00 40.10 2.71
4364 8341 5.645497 GTCCTGAGACTTGCATTTTAGATGT 59.355 40.000 0.00 0.00 40.10 3.06
4365 8342 6.116680 GTCCTGAGACTTGCATTTTAGATG 57.883 41.667 0.00 0.00 40.10 2.90
4379 8356 5.584253 TGCTTTCTGTATAGTCCTGAGAC 57.416 43.478 0.00 0.00 43.89 3.36
4380 8357 5.952347 TCTTGCTTTCTGTATAGTCCTGAGA 59.048 40.000 0.00 0.00 0.00 3.27
4381 8358 6.214191 TCTTGCTTTCTGTATAGTCCTGAG 57.786 41.667 0.00 0.00 0.00 3.35
4382 8359 5.127845 CCTCTTGCTTTCTGTATAGTCCTGA 59.872 44.000 0.00 0.00 0.00 3.86
4383 8360 5.355596 CCTCTTGCTTTCTGTATAGTCCTG 58.644 45.833 0.00 0.00 0.00 3.86
4384 8361 4.141824 GCCTCTTGCTTTCTGTATAGTCCT 60.142 45.833 0.00 0.00 36.87 3.85
4385 8362 4.123506 GCCTCTTGCTTTCTGTATAGTCC 58.876 47.826 0.00 0.00 36.87 3.85
4386 8363 4.568760 GTGCCTCTTGCTTTCTGTATAGTC 59.431 45.833 0.00 0.00 42.00 2.59
4387 8364 4.020218 TGTGCCTCTTGCTTTCTGTATAGT 60.020 41.667 0.00 0.00 42.00 2.12
4388 8365 4.507710 TGTGCCTCTTGCTTTCTGTATAG 58.492 43.478 0.00 0.00 42.00 1.31
4389 8366 4.222810 TCTGTGCCTCTTGCTTTCTGTATA 59.777 41.667 0.00 0.00 42.00 1.47
4390 8367 3.008375 TCTGTGCCTCTTGCTTTCTGTAT 59.992 43.478 0.00 0.00 42.00 2.29
4391 8368 2.368548 TCTGTGCCTCTTGCTTTCTGTA 59.631 45.455 0.00 0.00 42.00 2.74
4392 8369 1.141657 TCTGTGCCTCTTGCTTTCTGT 59.858 47.619 0.00 0.00 42.00 3.41
4393 8370 1.888215 TCTGTGCCTCTTGCTTTCTG 58.112 50.000 0.00 0.00 42.00 3.02
4394 8371 2.225467 GTTCTGTGCCTCTTGCTTTCT 58.775 47.619 0.00 0.00 42.00 2.52
4395 8372 1.268079 GGTTCTGTGCCTCTTGCTTTC 59.732 52.381 0.00 0.00 42.00 2.62
4396 8373 1.322442 GGTTCTGTGCCTCTTGCTTT 58.678 50.000 0.00 0.00 42.00 3.51
4397 8374 0.183492 TGGTTCTGTGCCTCTTGCTT 59.817 50.000 0.00 0.00 42.00 3.91
4398 8375 0.536006 GTGGTTCTGTGCCTCTTGCT 60.536 55.000 0.00 0.00 42.00 3.91
4399 8376 1.518903 GGTGGTTCTGTGCCTCTTGC 61.519 60.000 0.00 0.00 41.77 4.01
4400 8377 0.109342 AGGTGGTTCTGTGCCTCTTG 59.891 55.000 0.00 0.00 0.00 3.02
4401 8378 0.846693 AAGGTGGTTCTGTGCCTCTT 59.153 50.000 0.00 0.00 0.00 2.85
4402 8379 0.398318 GAAGGTGGTTCTGTGCCTCT 59.602 55.000 0.00 0.00 31.73 3.69
4403 8380 0.606673 GGAAGGTGGTTCTGTGCCTC 60.607 60.000 0.00 0.00 35.25 4.70
4404 8381 1.456287 GGAAGGTGGTTCTGTGCCT 59.544 57.895 0.00 0.00 35.25 4.75
4405 8382 4.081050 GGAAGGTGGTTCTGTGCC 57.919 61.111 0.00 0.00 35.25 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.