Multiple sequence alignment - TraesCS3D01G017500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G017500 chr3D 100.000 4803 0 0 1 4803 6008281 6013083 0.000000e+00 8870.0
1 TraesCS3D01G017500 chr3D 92.308 39 2 1 365 402 359915223 359915261 2.000000e-03 54.7
2 TraesCS3D01G017500 chr3B 89.989 1798 114 25 861 2629 7614958 7613198 0.000000e+00 2263.0
3 TraesCS3D01G017500 chr3B 92.438 1124 61 10 2748 3864 7612915 7611809 0.000000e+00 1583.0
4 TraesCS3D01G017500 chr3B 86.962 836 93 7 3110 3939 143589313 143588488 0.000000e+00 926.0
5 TraesCS3D01G017500 chr3B 86.819 789 73 15 4016 4803 7611774 7611016 0.000000e+00 852.0
6 TraesCS3D01G017500 chr3B 92.211 398 28 3 1 395 7615755 7615358 1.170000e-155 560.0
7 TraesCS3D01G017500 chr3B 87.255 306 21 8 2107 2411 143589590 143589302 2.770000e-87 333.0
8 TraesCS3D01G017500 chr3B 88.933 253 27 1 3122 3374 458263993 458264244 1.300000e-80 311.0
9 TraesCS3D01G017500 chr3B 81.170 393 59 12 361 744 7615345 7614959 7.810000e-78 302.0
10 TraesCS3D01G017500 chr3B 88.000 50 3 2 363 410 645813454 645813502 6.720000e-04 56.5
11 TraesCS3D01G017500 chr3A 91.361 1227 89 4 2721 3940 15091139 15089923 0.000000e+00 1663.0
12 TraesCS3D01G017500 chr3A 90.120 830 49 17 1840 2641 15091958 15091134 0.000000e+00 1048.0
13 TraesCS3D01G017500 chr3A 86.443 922 73 25 809 1699 15092985 15092085 0.000000e+00 963.0
14 TraesCS3D01G017500 chr3A 84.244 622 49 16 4182 4803 15089794 15089222 1.170000e-155 560.0
15 TraesCS3D01G017500 chr3A 100.000 28 0 0 2717 2744 416742456 416742483 9.000000e-03 52.8
16 TraesCS3D01G017500 chr1A 88.015 826 88 6 3125 3942 514893469 514892647 0.000000e+00 966.0
17 TraesCS3D01G017500 chr1A 88.015 826 88 6 3125 3942 515149734 515148912 0.000000e+00 966.0
18 TraesCS3D01G017500 chr1A 82.707 266 37 8 1164 1425 2054836 2055096 1.340000e-55 228.0
19 TraesCS3D01G017500 chr1A 80.583 103 11 8 2832 2930 22327136 22327233 2.400000e-08 71.3
20 TraesCS3D01G017500 chr1A 100.000 29 0 0 367 395 493660676 493660648 2.000000e-03 54.7
21 TraesCS3D01G017500 chr5D 87.015 824 99 3 3125 3942 171684548 171683727 0.000000e+00 922.0
22 TraesCS3D01G017500 chr5D 84.800 125 13 6 2808 2929 410395504 410395383 2.350000e-23 121.0
23 TraesCS3D01G017500 chr6D 86.867 830 97 8 3122 3942 300219160 300219986 0.000000e+00 918.0
24 TraesCS3D01G017500 chr2A 85.316 824 106 10 3125 3942 720971763 720970949 0.000000e+00 837.0
25 TraesCS3D01G017500 chr2A 83.150 273 31 6 1164 1429 746058240 746058504 8.040000e-58 235.0
26 TraesCS3D01G017500 chr2A 87.059 85 2 6 3936 4017 205493809 205493731 2.380000e-13 87.9
27 TraesCS3D01G017500 chr2A 85.057 87 5 7 3948 4026 617178881 617178795 1.110000e-11 82.4
28 TraesCS3D01G017500 chr7A 86.763 695 78 5 3251 3939 151764578 151765264 0.000000e+00 761.0
29 TraesCS3D01G017500 chr7A 86.040 351 34 6 1167 1510 23511985 23511643 3.530000e-96 363.0
30 TraesCS3D01G017500 chr7A 84.770 348 44 8 1167 1510 89465798 89465456 1.660000e-89 340.0
31 TraesCS3D01G017500 chr7A 100.000 29 0 0 2720 2748 133076327 133076355 2.000000e-03 54.7
32 TraesCS3D01G017500 chr7A 100.000 28 0 0 2720 2747 133062297 133062324 9.000000e-03 52.8
33 TraesCS3D01G017500 chr7B 86.219 283 21 7 2124 2403 128029119 128029386 1.690000e-74 291.0
34 TraesCS3D01G017500 chr7B 85.866 283 23 6 2130 2411 211418934 211419200 7.870000e-73 285.0
35 TraesCS3D01G017500 chr7B 85.507 276 23 5 2129 2403 127750484 127750743 6.130000e-69 272.0
36 TraesCS3D01G017500 chr7B 100.000 29 0 0 2720 2748 96284625 96284653 2.000000e-03 54.7
37 TraesCS3D01G017500 chr5A 89.730 185 16 2 1170 1351 102101309 102101125 2.890000e-57 233.0
38 TraesCS3D01G017500 chr2D 92.254 142 8 2 2107 2247 437375867 437375728 1.050000e-46 198.0
39 TraesCS3D01G017500 chr2D 86.486 74 8 2 135 208 113088828 113088757 3.980000e-11 80.5
40 TraesCS3D01G017500 chr6B 82.266 203 28 7 2721 2922 692573815 692573620 8.270000e-38 169.0
41 TraesCS3D01G017500 chr6B 84.615 91 8 5 3933 4017 225872633 225872723 8.560000e-13 86.1
42 TraesCS3D01G017500 chr6B 92.308 39 3 0 365 403 647446607 647446645 6.720000e-04 56.5
43 TraesCS3D01G017500 chr4A 93.056 72 1 4 3949 4017 670947489 670947419 8.500000e-18 102.0
44 TraesCS3D01G017500 chr4A 85.227 88 5 7 3934 4017 45680674 45680591 3.080000e-12 84.2
45 TraesCS3D01G017500 chr2B 83.019 106 15 3 2824 2928 755063122 755063019 5.120000e-15 93.5
46 TraesCS3D01G017500 chr2B 78.652 89 16 3 2842 2928 29551995 29552082 6.720000e-04 56.5
47 TraesCS3D01G017500 chr7D 90.278 72 3 3 3949 4017 29876446 29876376 1.840000e-14 91.6
48 TraesCS3D01G017500 chr7D 85.507 69 10 0 140 208 136685649 136685581 6.670000e-09 73.1
49 TraesCS3D01G017500 chr4D 85.714 91 5 6 3939 4022 352127892 352127803 6.620000e-14 89.8
50 TraesCS3D01G017500 chr4D 83.673 98 8 6 3934 4028 402528009 402527917 8.560000e-13 86.1
51 TraesCS3D01G017500 chr4D 79.048 105 17 5 2826 2928 259157818 259157717 3.100000e-07 67.6
52 TraesCS3D01G017500 chr4D 73.488 215 41 15 2721 2928 483701839 483702044 3.100000e-07 67.6
53 TraesCS3D01G017500 chr4B 83.673 98 8 6 3934 4028 498374538 498374446 8.560000e-13 86.1
54 TraesCS3D01G017500 chr6A 100.000 28 0 0 1711 1738 147460939 147460966 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G017500 chr3D 6008281 6013083 4802 False 8870.0 8870 100.0000 1 4803 1 chr3D.!!$F1 4802
1 TraesCS3D01G017500 chr3B 7611016 7615755 4739 True 1112.0 2263 88.5254 1 4803 5 chr3B.!!$R1 4802
2 TraesCS3D01G017500 chr3B 143588488 143589590 1102 True 629.5 926 87.1085 2107 3939 2 chr3B.!!$R2 1832
3 TraesCS3D01G017500 chr3A 15089222 15092985 3763 True 1058.5 1663 88.0420 809 4803 4 chr3A.!!$R1 3994
4 TraesCS3D01G017500 chr1A 514892647 514893469 822 True 966.0 966 88.0150 3125 3942 1 chr1A.!!$R2 817
5 TraesCS3D01G017500 chr1A 515148912 515149734 822 True 966.0 966 88.0150 3125 3942 1 chr1A.!!$R3 817
6 TraesCS3D01G017500 chr5D 171683727 171684548 821 True 922.0 922 87.0150 3125 3942 1 chr5D.!!$R1 817
7 TraesCS3D01G017500 chr6D 300219160 300219986 826 False 918.0 918 86.8670 3122 3942 1 chr6D.!!$F1 820
8 TraesCS3D01G017500 chr2A 720970949 720971763 814 True 837.0 837 85.3160 3125 3942 1 chr2A.!!$R3 817
9 TraesCS3D01G017500 chr7A 151764578 151765264 686 False 761.0 761 86.7630 3251 3939 1 chr7A.!!$F3 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1049 0.036306 ACAAAGGTTGGTAGGAGCCG 59.964 55.0 0.00 0.00 34.12 5.52 F
1588 1693 0.040603 GCTATTCTTGCGCAGATGCC 60.041 55.0 11.31 0.00 37.91 4.40 F
2617 2794 0.250467 GTTGCCAAGTGAGAGCCTCA 60.250 55.0 0.00 1.25 38.25 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 2711 0.032952 CGACGTTCACCTTTCCCAGA 59.967 55.0 0.0 0.0 0.00 3.86 R
2661 2838 0.033699 GGACGGGGGTAGTAGACAGT 60.034 60.0 0.0 0.0 0.00 3.55 R
3977 4348 0.034337 AAGAGCGTTAGGGCGTTTGA 59.966 50.0 0.0 0.0 38.18 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.380515 TTGCCTCCTCCCTCTCTCG 60.381 63.158 0.00 0.00 0.00 4.04
39 40 1.380650 GCCTCCTCCCTCTCTCGTT 60.381 63.158 0.00 0.00 0.00 3.85
40 41 1.388837 GCCTCCTCCCTCTCTCGTTC 61.389 65.000 0.00 0.00 0.00 3.95
71 74 0.320421 TGTCTTGTCGTAAGGCTGGC 60.320 55.000 7.93 0.00 46.88 4.85
143 146 1.407656 TTTCAGTGGACTGGGAGCGT 61.408 55.000 6.94 0.00 43.91 5.07
146 149 4.008933 GTGGACTGGGAGCGTGCT 62.009 66.667 0.00 0.00 0.00 4.40
153 156 2.172483 CTGGGAGCGTGCTACTTGGT 62.172 60.000 3.73 0.00 0.00 3.67
203 206 3.202706 GCGCACCCTCGGGATTTC 61.203 66.667 9.43 0.00 38.96 2.17
236 239 3.677002 TTTTTCCGGCTTTGCTTGG 57.323 47.368 0.00 0.00 0.00 3.61
237 240 0.827368 TTTTTCCGGCTTTGCTTGGT 59.173 45.000 0.00 0.00 0.00 3.67
255 258 3.301274 TGGTTTTCCCTAGGTTTTGGTG 58.699 45.455 8.29 0.00 39.73 4.17
283 286 3.315191 TCTTTTCTTTTCGGGAAGCAGTG 59.685 43.478 0.00 0.00 0.00 3.66
302 305 1.992667 TGCATTTCTACGAGAAGCACG 59.007 47.619 0.00 0.00 35.37 5.34
327 330 3.384467 TGTGCTTTCTGAAAAGGGAAAGG 59.616 43.478 14.47 0.00 44.78 3.11
331 334 1.604604 TCTGAAAAGGGAAAGGCACG 58.395 50.000 0.00 0.00 0.00 5.34
332 335 1.142060 TCTGAAAAGGGAAAGGCACGA 59.858 47.619 0.00 0.00 0.00 4.35
381 433 4.482386 CCAACATGTGCTTTCATGAGAAG 58.518 43.478 18.44 11.18 45.41 2.85
386 438 3.631145 GTGCTTTCATGAGAAGCACAA 57.369 42.857 37.45 21.77 46.41 3.33
388 440 3.004106 GTGCTTTCATGAGAAGCACAACT 59.996 43.478 37.45 0.00 46.41 3.16
389 441 4.214119 GTGCTTTCATGAGAAGCACAACTA 59.786 41.667 37.45 20.88 46.41 2.24
401 453 1.810151 GCACAACTATGCTTCCCGAAA 59.190 47.619 0.00 0.00 42.62 3.46
430 482 0.040425 CCGTGCTTCGTGAAAAAGGG 60.040 55.000 1.89 0.00 37.94 3.95
438 491 5.047188 GCTTCGTGAAAAAGGGAAAATCAA 58.953 37.500 0.00 0.00 0.00 2.57
451 504 6.179756 AGGGAAAATCAAAACTTGTGCTTTT 58.820 32.000 0.00 0.00 0.00 2.27
452 505 7.334858 AGGGAAAATCAAAACTTGTGCTTTTA 58.665 30.769 0.00 0.00 0.00 1.52
465 518 2.778299 TGCTTTTACGAGAGGCACAAT 58.222 42.857 0.00 0.00 0.00 2.71
467 520 3.058293 TGCTTTTACGAGAGGCACAATTG 60.058 43.478 3.24 3.24 0.00 2.32
486 539 7.689400 CACAATTGTGCTTTCTGAAAAAGAAAC 59.311 33.333 24.69 0.14 42.83 2.78
519 572 6.018016 GCTATGAAAAGCACAACCATGTTTTT 60.018 34.615 0.74 0.74 43.18 1.94
520 573 7.170658 GCTATGAAAAGCACAACCATGTTTTTA 59.829 33.333 1.11 0.00 41.36 1.52
521 574 9.206870 CTATGAAAAGCACAACCATGTTTTTAT 57.793 29.630 1.11 0.00 41.36 1.40
522 575 7.856145 TGAAAAGCACAACCATGTTTTTATT 57.144 28.000 1.11 0.00 41.36 1.40
558 611 8.233868 ACTTTTGGAAAAATTTTGAGGTTTTCG 58.766 29.630 3.73 0.00 40.54 3.46
569 623 6.469139 TTTGAGGTTTTCGTTTTTGTTTCC 57.531 33.333 0.00 0.00 0.00 3.13
571 625 4.924462 TGAGGTTTTCGTTTTTGTTTCCAC 59.076 37.500 0.00 0.00 0.00 4.02
572 626 5.142061 AGGTTTTCGTTTTTGTTTCCACT 57.858 34.783 0.00 0.00 0.00 4.00
657 715 5.519722 GCATCGAAACTTATTAACATGGGG 58.480 41.667 0.00 0.00 0.00 4.96
662 720 8.271312 TCGAAACTTATTAACATGGGGTTTAG 57.729 34.615 0.00 0.00 40.96 1.85
664 722 8.179615 CGAAACTTATTAACATGGGGTTTAGTC 58.820 37.037 0.00 0.00 40.96 2.59
665 723 7.949690 AACTTATTAACATGGGGTTTAGTCC 57.050 36.000 0.00 0.00 40.96 3.85
666 724 6.429151 ACTTATTAACATGGGGTTTAGTCCC 58.571 40.000 0.00 0.00 46.31 4.46
727 785 6.384258 TTCATGATTTGAACGAGGACAAAA 57.616 33.333 0.00 0.00 39.44 2.44
733 791 2.833794 TGAACGAGGACAAAACTCCAG 58.166 47.619 0.00 0.00 31.94 3.86
744 802 3.397955 ACAAAACTCCAGATAAGGTGGGT 59.602 43.478 0.00 0.00 35.58 4.51
745 803 3.721087 AAACTCCAGATAAGGTGGGTG 57.279 47.619 0.00 0.00 35.58 4.61
746 804 1.584724 ACTCCAGATAAGGTGGGTGG 58.415 55.000 0.00 0.00 35.58 4.61
747 805 1.080498 ACTCCAGATAAGGTGGGTGGA 59.920 52.381 0.00 0.00 35.58 4.02
748 806 1.486726 CTCCAGATAAGGTGGGTGGAC 59.513 57.143 0.00 0.00 35.58 4.02
749 807 0.546598 CCAGATAAGGTGGGTGGACC 59.453 60.000 0.00 0.00 40.81 4.46
751 809 2.628559 CCAGATAAGGTGGGTGGACCTA 60.629 54.545 0.00 0.00 46.29 3.08
752 810 3.318313 CAGATAAGGTGGGTGGACCTAT 58.682 50.000 0.00 0.00 46.29 2.57
753 811 3.071602 CAGATAAGGTGGGTGGACCTATG 59.928 52.174 0.00 0.00 46.29 2.23
754 812 1.209621 TAAGGTGGGTGGACCTATGC 58.790 55.000 0.00 0.00 46.29 3.14
755 813 0.844661 AAGGTGGGTGGACCTATGCA 60.845 55.000 0.00 0.00 46.29 3.96
756 814 0.844661 AGGTGGGTGGACCTATGCAA 60.845 55.000 0.00 0.00 45.09 4.08
757 815 0.039035 GGTGGGTGGACCTATGCAAA 59.961 55.000 0.00 0.00 41.11 3.68
758 816 1.549037 GGTGGGTGGACCTATGCAAAA 60.549 52.381 0.00 0.00 41.11 2.44
759 817 1.818674 GTGGGTGGACCTATGCAAAAG 59.181 52.381 0.00 0.00 41.11 2.27
760 818 1.427368 TGGGTGGACCTATGCAAAAGT 59.573 47.619 0.00 0.00 41.11 2.66
761 819 2.158385 TGGGTGGACCTATGCAAAAGTT 60.158 45.455 0.00 0.00 41.11 2.66
762 820 2.897326 GGGTGGACCTATGCAAAAGTTT 59.103 45.455 0.00 0.00 35.85 2.66
763 821 3.056821 GGGTGGACCTATGCAAAAGTTTC 60.057 47.826 0.00 0.00 35.85 2.78
764 822 3.056821 GGTGGACCTATGCAAAAGTTTCC 60.057 47.826 0.00 0.58 0.00 3.13
765 823 3.056821 GTGGACCTATGCAAAAGTTTCCC 60.057 47.826 0.00 0.00 0.00 3.97
766 824 2.496070 GGACCTATGCAAAAGTTTCCCC 59.504 50.000 0.00 0.00 0.00 4.81
767 825 3.431415 GACCTATGCAAAAGTTTCCCCT 58.569 45.455 0.00 0.00 0.00 4.79
768 826 3.832490 GACCTATGCAAAAGTTTCCCCTT 59.168 43.478 0.00 0.00 0.00 3.95
769 827 4.231273 ACCTATGCAAAAGTTTCCCCTTT 58.769 39.130 0.00 0.00 36.23 3.11
770 828 5.399113 ACCTATGCAAAAGTTTCCCCTTTA 58.601 37.500 0.00 0.00 33.62 1.85
771 829 5.841783 ACCTATGCAAAAGTTTCCCCTTTAA 59.158 36.000 0.00 0.00 33.62 1.52
772 830 6.163476 CCTATGCAAAAGTTTCCCCTTTAAC 58.837 40.000 0.00 0.00 33.62 2.01
773 831 5.887214 ATGCAAAAGTTTCCCCTTTAACT 57.113 34.783 0.00 0.00 33.62 2.24
774 832 6.987403 ATGCAAAAGTTTCCCCTTTAACTA 57.013 33.333 0.00 0.00 33.62 2.24
775 833 6.399639 TGCAAAAGTTTCCCCTTTAACTAG 57.600 37.500 0.00 0.00 33.62 2.57
776 834 5.894964 TGCAAAAGTTTCCCCTTTAACTAGT 59.105 36.000 0.00 0.00 33.62 2.57
777 835 6.381707 TGCAAAAGTTTCCCCTTTAACTAGTT 59.618 34.615 13.68 13.68 33.62 2.24
778 836 7.093245 TGCAAAAGTTTCCCCTTTAACTAGTTT 60.093 33.333 14.49 0.00 33.62 2.66
779 837 7.767198 GCAAAAGTTTCCCCTTTAACTAGTTTT 59.233 33.333 14.49 0.00 33.62 2.43
780 838 9.661563 CAAAAGTTTCCCCTTTAACTAGTTTTT 57.338 29.630 14.49 0.70 33.62 1.94
806 864 8.913487 TTTTTAGACAAGTCCCCTTTAACTAG 57.087 34.615 0.00 0.00 0.00 2.57
807 865 7.622502 TTTAGACAAGTCCCCTTTAACTAGT 57.377 36.000 0.00 0.00 0.00 2.57
808 866 5.485209 AGACAAGTCCCCTTTAACTAGTG 57.515 43.478 0.00 0.00 0.00 2.74
809 867 5.152934 AGACAAGTCCCCTTTAACTAGTGA 58.847 41.667 0.00 0.00 0.00 3.41
810 868 5.785940 AGACAAGTCCCCTTTAACTAGTGAT 59.214 40.000 0.00 0.00 0.00 3.06
811 869 6.272558 AGACAAGTCCCCTTTAACTAGTGATT 59.727 38.462 0.00 0.00 0.00 2.57
884 942 1.378124 GAGCGGAACTAGACGAGCCT 61.378 60.000 0.00 0.00 0.00 4.58
928 996 0.173481 TCCGGATTCGCTCTCACTTG 59.827 55.000 0.00 0.00 34.56 3.16
929 997 0.108615 CCGGATTCGCTCTCACTTGT 60.109 55.000 0.00 0.00 34.56 3.16
930 998 1.272781 CGGATTCGCTCTCACTTGTC 58.727 55.000 0.00 0.00 0.00 3.18
931 999 1.402852 CGGATTCGCTCTCACTTGTCA 60.403 52.381 0.00 0.00 0.00 3.58
932 1000 1.996191 GGATTCGCTCTCACTTGTCAC 59.004 52.381 0.00 0.00 0.00 3.67
933 1001 2.353208 GGATTCGCTCTCACTTGTCACT 60.353 50.000 0.00 0.00 0.00 3.41
934 1002 2.890808 TTCGCTCTCACTTGTCACTT 57.109 45.000 0.00 0.00 0.00 3.16
935 1003 2.423926 TCGCTCTCACTTGTCACTTC 57.576 50.000 0.00 0.00 0.00 3.01
936 1004 1.000163 TCGCTCTCACTTGTCACTTCC 60.000 52.381 0.00 0.00 0.00 3.46
937 1005 1.802069 GCTCTCACTTGTCACTTCCC 58.198 55.000 0.00 0.00 0.00 3.97
975 1046 1.156736 CGCACAAAGGTTGGTAGGAG 58.843 55.000 0.00 0.00 34.12 3.69
977 1048 1.534729 CACAAAGGTTGGTAGGAGCC 58.465 55.000 0.00 0.00 34.12 4.70
978 1049 0.036306 ACAAAGGTTGGTAGGAGCCG 59.964 55.000 0.00 0.00 34.12 5.52
994 1075 1.000486 CCGAGGAGAGAGTGGGGAA 60.000 63.158 0.00 0.00 0.00 3.97
1108 1199 1.385915 GGTCTCCCATCCCATCCCA 60.386 63.158 0.00 0.00 0.00 4.37
1111 1202 2.369568 TCCCATCCCATCCCACCC 60.370 66.667 0.00 0.00 0.00 4.61
1112 1203 3.511610 CCCATCCCATCCCACCCC 61.512 72.222 0.00 0.00 0.00 4.95
1113 1204 3.889692 CCATCCCATCCCACCCCG 61.890 72.222 0.00 0.00 0.00 5.73
1114 1205 4.586235 CATCCCATCCCACCCCGC 62.586 72.222 0.00 0.00 0.00 6.13
1125 1216 1.969589 CACCCCGCGGCTTTACTTT 60.970 57.895 22.85 0.00 0.00 2.66
1126 1217 1.673337 ACCCCGCGGCTTTACTTTC 60.673 57.895 22.85 0.00 0.00 2.62
1127 1218 2.404186 CCCCGCGGCTTTACTTTCC 61.404 63.158 22.85 0.00 0.00 3.13
1128 1219 1.376812 CCCGCGGCTTTACTTTCCT 60.377 57.895 22.85 0.00 0.00 3.36
1129 1220 1.366854 CCCGCGGCTTTACTTTCCTC 61.367 60.000 22.85 0.00 0.00 3.71
1130 1221 0.391263 CCGCGGCTTTACTTTCCTCT 60.391 55.000 14.67 0.00 0.00 3.69
1131 1222 1.000145 CGCGGCTTTACTTTCCTCTC 59.000 55.000 0.00 0.00 0.00 3.20
1132 1223 1.404315 CGCGGCTTTACTTTCCTCTCT 60.404 52.381 0.00 0.00 0.00 3.10
1133 1224 2.003301 GCGGCTTTACTTTCCTCTCTG 58.997 52.381 0.00 0.00 0.00 3.35
1134 1225 2.353803 GCGGCTTTACTTTCCTCTCTGA 60.354 50.000 0.00 0.00 0.00 3.27
1135 1226 3.680196 GCGGCTTTACTTTCCTCTCTGAT 60.680 47.826 0.00 0.00 0.00 2.90
1147 1238 0.395862 TCTCTGATCCCCGTCACTCC 60.396 60.000 0.00 0.00 0.00 3.85
1174 1265 3.270877 CCTTCCTAATCGTGGTCTTTGG 58.729 50.000 0.00 0.00 0.00 3.28
1234 1325 0.179020 TCAGTGACAAGCAGGTTGGG 60.179 55.000 16.62 1.43 40.90 4.12
1247 1338 1.657751 GGTTGGGCATCTTTCTCGGC 61.658 60.000 0.00 0.00 0.00 5.54
1256 1347 1.645710 TCTTTCTCGGCTCTTTCCCT 58.354 50.000 0.00 0.00 0.00 4.20
1277 1368 1.101331 GCATTCCTTTGCTAGCAGCT 58.899 50.000 18.45 0.00 42.97 4.24
1278 1369 1.475682 GCATTCCTTTGCTAGCAGCTT 59.524 47.619 18.45 0.00 42.97 3.74
1377 1475 9.784531 CAGTGAAATATAATGGACTTGGATAGT 57.215 33.333 0.00 0.00 40.71 2.12
1564 1669 2.562298 TGCCTATTCTGGTTTGCTTTGG 59.438 45.455 0.00 0.00 0.00 3.28
1567 1672 4.082125 CCTATTCTGGTTTGCTTTGGTCT 58.918 43.478 0.00 0.00 0.00 3.85
1568 1673 4.082571 CCTATTCTGGTTTGCTTTGGTCTG 60.083 45.833 0.00 0.00 0.00 3.51
1571 1676 0.396974 TGGTTTGCTTTGGTCTGGCT 60.397 50.000 0.00 0.00 0.00 4.75
1579 1684 2.159324 GCTTTGGTCTGGCTATTCTTGC 60.159 50.000 0.00 0.00 0.00 4.01
1588 1693 0.040603 GCTATTCTTGCGCAGATGCC 60.041 55.000 11.31 0.00 37.91 4.40
1590 1695 1.672363 CTATTCTTGCGCAGATGCCAA 59.328 47.619 11.31 4.22 37.91 4.52
1614 1719 1.330521 CGAATTGACAATGGCCTACCG 59.669 52.381 3.32 0.00 39.70 4.02
1621 1726 1.206371 ACAATGGCCTACCGTGTCTAC 59.794 52.381 3.32 0.00 39.70 2.59
1625 1731 1.972795 TGGCCTACCGTGTCTACTTTT 59.027 47.619 3.32 0.00 39.70 2.27
1699 1812 3.838903 GGTACTCCCTCCGATCCATATTT 59.161 47.826 0.00 0.00 0.00 1.40
1700 1813 4.322801 GGTACTCCCTCCGATCCATATTTG 60.323 50.000 0.00 0.00 0.00 2.32
1709 1857 5.297547 TCCGATCCATATTTGTAAGTGAGC 58.702 41.667 0.00 0.00 0.00 4.26
1719 1867 9.767684 CATATTTGTAAGTGAGCGACAATTAAA 57.232 29.630 7.99 1.94 40.00 1.52
1723 1871 6.607689 TGTAAGTGAGCGACAATTAAAATGG 58.392 36.000 7.99 0.00 40.00 3.16
1726 1874 6.515272 AGTGAGCGACAATTAAAATGGATT 57.485 33.333 0.00 0.00 0.00 3.01
1737 1885 7.342026 ACAATTAAAATGGATTGGAGGGAGTAC 59.658 37.037 0.00 0.00 37.53 2.73
1756 1904 7.094762 GGGAGTACCATATTTGTAAAGCTATGC 60.095 40.741 0.00 0.00 39.85 3.14
1774 1922 8.082672 AGCTATGCAACATATCCTGATGTATA 57.917 34.615 0.00 0.00 39.16 1.47
1775 1923 8.542926 AGCTATGCAACATATCCTGATGTATAA 58.457 33.333 0.00 0.00 39.16 0.98
1866 2014 4.289672 AGGTCCATACTTCCTGTCAAATGT 59.710 41.667 0.00 0.00 0.00 2.71
1877 2025 5.309638 TCCTGTCAAATGTTCGGTATTGAA 58.690 37.500 0.00 0.00 33.93 2.69
1941 2089 1.376424 CCACTGTAGCTGCCACTGG 60.376 63.158 9.53 1.67 0.00 4.00
2133 2288 2.818751 TTGTGAGTTTGGTCCTGGTT 57.181 45.000 0.00 0.00 0.00 3.67
2168 2323 2.213499 GACAGCAGCAACAGTGTAGTT 58.787 47.619 0.00 0.00 0.00 2.24
2277 2432 2.042831 GCTGTGTCCAGGTGCATCC 61.043 63.158 0.00 0.00 39.22 3.51
2282 2437 3.111484 TGTGTCCAGGTGCATCCTATTA 58.889 45.455 7.41 0.00 46.24 0.98
2423 2579 8.370493 TGTATGCTAAGTGAGATTGCTAATTC 57.630 34.615 0.00 0.00 0.00 2.17
2429 2585 9.230932 GCTAAGTGAGATTGCTAATTCATTTTC 57.769 33.333 0.00 0.00 0.00 2.29
2617 2794 0.250467 GTTGCCAAGTGAGAGCCTCA 60.250 55.000 0.00 1.25 38.25 3.86
2619 2796 0.694771 TGCCAAGTGAGAGCCTCATT 59.305 50.000 7.95 2.01 42.73 2.57
2650 2827 8.990163 TTTCCCTGTATATTTTCCACTATTCC 57.010 34.615 0.00 0.00 0.00 3.01
2651 2828 7.699709 TCCCTGTATATTTTCCACTATTCCA 57.300 36.000 0.00 0.00 0.00 3.53
2652 2829 7.514721 TCCCTGTATATTTTCCACTATTCCAC 58.485 38.462 0.00 0.00 0.00 4.02
2653 2830 7.349859 TCCCTGTATATTTTCCACTATTCCACT 59.650 37.037 0.00 0.00 0.00 4.00
2654 2831 8.656806 CCCTGTATATTTTCCACTATTCCACTA 58.343 37.037 0.00 0.00 0.00 2.74
2663 2840 9.802039 TTTTCCACTATTCCACTATGTAAAACT 57.198 29.630 0.00 0.00 0.00 2.66
2664 2841 8.786826 TTCCACTATTCCACTATGTAAAACTG 57.213 34.615 0.00 0.00 0.00 3.16
2665 2842 7.913789 TCCACTATTCCACTATGTAAAACTGT 58.086 34.615 0.00 0.00 0.00 3.55
2666 2843 8.038944 TCCACTATTCCACTATGTAAAACTGTC 58.961 37.037 0.00 0.00 0.00 3.51
2667 2844 8.041323 CCACTATTCCACTATGTAAAACTGTCT 58.959 37.037 0.00 0.00 0.00 3.41
2673 2850 8.059798 TCCACTATGTAAAACTGTCTACTACC 57.940 38.462 2.82 0.00 0.00 3.18
2674 2851 7.123247 TCCACTATGTAAAACTGTCTACTACCC 59.877 40.741 2.82 0.00 0.00 3.69
2675 2852 7.263496 CACTATGTAAAACTGTCTACTACCCC 58.737 42.308 2.82 0.00 0.00 4.95
2676 2853 5.688814 ATGTAAAACTGTCTACTACCCCC 57.311 43.478 2.82 0.00 0.00 5.40
2677 2854 3.511146 TGTAAAACTGTCTACTACCCCCG 59.489 47.826 2.82 0.00 0.00 5.73
2678 2855 2.315720 AAACTGTCTACTACCCCCGT 57.684 50.000 0.00 0.00 0.00 5.28
2679 2856 1.844687 AACTGTCTACTACCCCCGTC 58.155 55.000 0.00 0.00 0.00 4.79
2680 2857 0.033699 ACTGTCTACTACCCCCGTCC 60.034 60.000 0.00 0.00 0.00 4.79
2681 2858 1.077501 TGTCTACTACCCCCGTCCG 60.078 63.158 0.00 0.00 0.00 4.79
2682 2859 1.825622 GTCTACTACCCCCGTCCGG 60.826 68.421 0.00 0.00 0.00 5.14
2693 2870 2.771435 CCGTCCGGGTTTATTGTCC 58.229 57.895 0.00 0.00 0.00 4.02
2694 2871 0.745486 CCGTCCGGGTTTATTGTCCC 60.745 60.000 0.00 0.00 40.26 4.46
2695 2872 0.745486 CGTCCGGGTTTATTGTCCCC 60.745 60.000 0.00 0.00 40.54 4.81
2696 2873 0.394762 GTCCGGGTTTATTGTCCCCC 60.395 60.000 0.00 0.00 40.54 5.40
2715 2892 4.548513 CCCCCTCCCTCTCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
2734 2911 1.663445 CGCGCGTATTTTGGGTCAAAA 60.663 47.619 24.19 8.04 45.41 2.44
2835 3178 8.649973 AGAGCTTCCTCGTAGTATAATTTTTG 57.350 34.615 0.00 0.00 43.05 2.44
2839 3182 6.913873 TCCTCGTAGTATAATTTTTGGTGC 57.086 37.500 0.00 0.00 0.00 5.01
2840 3183 6.646267 TCCTCGTAGTATAATTTTTGGTGCT 58.354 36.000 0.00 0.00 0.00 4.40
2898 3241 7.936847 TGTCAAACTTTAGCCAAGAATAAGAGA 59.063 33.333 0.26 0.00 36.21 3.10
2918 3261 0.547553 GGGCCTAATAAACCCGGACA 59.452 55.000 0.73 0.00 32.92 4.02
2922 3265 2.484947 GCCTAATAAACCCGGACAGAGG 60.485 54.545 0.73 0.83 0.00 3.69
2933 3276 1.064906 CGGACAGAGGTAGTAGTGGGA 60.065 57.143 0.00 0.00 0.00 4.37
2949 3292 0.107643 GGGATAAGAGACCTGCCAGC 59.892 60.000 0.00 0.00 0.00 4.85
2958 3301 0.737219 GACCTGCCAGCAATGCTTAG 59.263 55.000 4.36 4.45 36.40 2.18
3042 3385 7.128883 ACCCCATAGTTTCATGTATTAGTTCCT 59.871 37.037 0.00 0.00 0.00 3.36
3082 3425 9.674068 TTTACATAATTTAGTGACATAGTGGCA 57.326 29.630 0.00 0.00 29.15 4.92
3083 3426 9.845740 TTACATAATTTAGTGACATAGTGGCAT 57.154 29.630 0.00 0.00 37.93 4.40
3164 3507 3.727726 TGATCTGTGTAGTGGTGTGTTG 58.272 45.455 0.00 0.00 0.00 3.33
3211 3559 4.392921 AGAGCTGTATCAGTTAATGCGT 57.607 40.909 0.00 0.00 33.43 5.24
3215 3563 3.865745 GCTGTATCAGTTAATGCGTCAGT 59.134 43.478 0.00 0.00 33.43 3.41
3223 3571 7.609760 TCAGTTAATGCGTCAGTCATAAAAT 57.390 32.000 0.00 0.00 0.00 1.82
3233 3581 7.148639 TGCGTCAGTCATAAAATAGAACAAGTC 60.149 37.037 0.00 0.00 0.00 3.01
3311 3666 8.514330 TTACAAACTTGACCTGAACTATTGTT 57.486 30.769 0.00 0.00 39.42 2.83
3415 3771 2.053627 GTTTGCCGAGAAAATGCACAG 58.946 47.619 0.00 0.00 34.16 3.66
3450 3807 2.426738 CAACAACAGGTGAGGCAAAGAA 59.573 45.455 0.00 0.00 0.00 2.52
3486 3843 6.071952 TGCCTTCTTCAAAACATCCATCTTAC 60.072 38.462 0.00 0.00 0.00 2.34
3495 3852 7.339212 TCAAAACATCCATCTTACCTGTATTGG 59.661 37.037 0.00 0.00 0.00 3.16
3511 3868 8.220559 ACCTGTATTGGAGATGCTAATTACATT 58.779 33.333 0.00 0.00 0.00 2.71
3528 3885 8.891671 AATTACATTCTTTTGATTGCTGTTGT 57.108 26.923 0.00 0.00 34.24 3.32
3600 3963 7.323420 CCAATCTGTCATACTTGAGACTGTAA 58.677 38.462 0.00 0.00 35.83 2.41
3636 3999 4.092383 CGTCCCCTTTCAGTAAAACATACG 59.908 45.833 0.00 0.00 0.00 3.06
3648 4011 4.483476 AAAACATACGCAACCAGAGTTC 57.517 40.909 0.00 0.00 32.45 3.01
3812 4183 8.946085 GGATTGTTGAGAAATAGTTCACATGTA 58.054 33.333 5.62 0.00 34.80 2.29
3817 4188 9.155975 GTTGAGAAATAGTTCACATGTATGACT 57.844 33.333 5.62 5.63 34.80 3.41
3864 4235 5.222048 CCAGTCTTCTCCCTCTACTATAGCT 60.222 48.000 0.00 0.00 0.00 3.32
3889 4260 1.944709 GTTGTATTCCGCCCATACACC 59.055 52.381 0.00 0.00 36.94 4.16
3940 4311 5.801350 TCATGTAATCTGCACTTTGCTAC 57.199 39.130 0.00 0.00 45.31 3.58
3941 4312 5.491070 TCATGTAATCTGCACTTTGCTACT 58.509 37.500 0.00 0.00 45.31 2.57
3942 4313 5.582269 TCATGTAATCTGCACTTTGCTACTC 59.418 40.000 0.00 0.00 45.31 2.59
3943 4314 5.152623 TGTAATCTGCACTTTGCTACTCT 57.847 39.130 0.00 0.00 45.31 3.24
3944 4315 5.171476 TGTAATCTGCACTTTGCTACTCTC 58.829 41.667 0.00 0.00 45.31 3.20
3946 4317 3.969287 TCTGCACTTTGCTACTCTCAT 57.031 42.857 0.00 0.00 45.31 2.90
3947 4318 4.277515 TCTGCACTTTGCTACTCTCATT 57.722 40.909 0.00 0.00 45.31 2.57
3949 4320 3.743521 TGCACTTTGCTACTCTCATTGT 58.256 40.909 0.00 0.00 45.31 2.71
3950 4321 4.893608 TGCACTTTGCTACTCTCATTGTA 58.106 39.130 0.00 0.00 45.31 2.41
3951 4322 5.304778 TGCACTTTGCTACTCTCATTGTAA 58.695 37.500 0.00 0.00 45.31 2.41
3952 4323 5.762711 TGCACTTTGCTACTCTCATTGTAAA 59.237 36.000 0.00 0.00 45.31 2.01
3953 4324 6.073058 TGCACTTTGCTACTCTCATTGTAAAG 60.073 38.462 0.00 0.00 45.31 1.85
3954 4325 6.147821 GCACTTTGCTACTCTCATTGTAAAGA 59.852 38.462 8.80 0.00 40.96 2.52
3955 4326 7.307989 GCACTTTGCTACTCTCATTGTAAAGAA 60.308 37.037 8.80 0.00 40.96 2.52
3956 4327 8.559536 CACTTTGCTACTCTCATTGTAAAGAAA 58.440 33.333 8.80 0.00 36.26 2.52
3957 4328 9.289782 ACTTTGCTACTCTCATTGTAAAGAAAT 57.710 29.630 8.80 0.00 36.26 2.17
3967 4338 9.817809 TCTCATTGTAAAGAAATATAAGAGCGT 57.182 29.630 0.00 0.00 0.00 5.07
3978 4349 9.685828 AGAAATATAAGAGCGTTTAGATCACTC 57.314 33.333 0.00 0.00 37.82 3.51
3979 4350 9.464714 GAAATATAAGAGCGTTTAGATCACTCA 57.535 33.333 0.00 0.00 37.82 3.41
3980 4351 9.817809 AAATATAAGAGCGTTTAGATCACTCAA 57.182 29.630 0.00 0.00 37.82 3.02
3981 4352 9.817809 AATATAAGAGCGTTTAGATCACTCAAA 57.182 29.630 0.00 0.00 37.82 2.69
3982 4353 5.847670 AAGAGCGTTTAGATCACTCAAAC 57.152 39.130 0.00 0.00 37.82 2.93
3985 4356 3.369835 CGTTTAGATCACTCAAACGCC 57.630 47.619 16.29 0.00 45.21 5.68
3986 4357 2.093783 CGTTTAGATCACTCAAACGCCC 59.906 50.000 16.29 0.00 45.21 6.13
3987 4358 3.335579 GTTTAGATCACTCAAACGCCCT 58.664 45.455 0.00 0.00 0.00 5.19
3988 4359 4.501071 GTTTAGATCACTCAAACGCCCTA 58.499 43.478 0.00 0.00 0.00 3.53
3989 4360 4.811969 TTAGATCACTCAAACGCCCTAA 57.188 40.909 0.00 0.00 0.00 2.69
3990 4361 2.973945 AGATCACTCAAACGCCCTAAC 58.026 47.619 0.00 0.00 0.00 2.34
3991 4362 1.659098 GATCACTCAAACGCCCTAACG 59.341 52.381 0.00 0.00 39.50 3.18
3992 4363 0.947180 TCACTCAAACGCCCTAACGC 60.947 55.000 0.00 0.00 36.19 4.84
3993 4364 0.949105 CACTCAAACGCCCTAACGCT 60.949 55.000 0.00 0.00 36.19 5.07
3994 4365 0.669625 ACTCAAACGCCCTAACGCTC 60.670 55.000 0.00 0.00 36.19 5.03
3995 4366 0.389948 CTCAAACGCCCTAACGCTCT 60.390 55.000 0.00 0.00 36.19 4.09
3996 4367 0.034337 TCAAACGCCCTAACGCTCTT 59.966 50.000 0.00 0.00 36.19 2.85
3997 4368 1.273048 TCAAACGCCCTAACGCTCTTA 59.727 47.619 0.00 0.00 36.19 2.10
3998 4369 2.093869 TCAAACGCCCTAACGCTCTTAT 60.094 45.455 0.00 0.00 36.19 1.73
3999 4370 3.130869 TCAAACGCCCTAACGCTCTTATA 59.869 43.478 0.00 0.00 36.19 0.98
4000 4371 4.056050 CAAACGCCCTAACGCTCTTATAT 58.944 43.478 0.00 0.00 36.19 0.86
4001 4372 4.332428 AACGCCCTAACGCTCTTATATT 57.668 40.909 0.00 0.00 36.19 1.28
4002 4373 4.332428 ACGCCCTAACGCTCTTATATTT 57.668 40.909 0.00 0.00 36.19 1.40
4003 4374 4.304939 ACGCCCTAACGCTCTTATATTTC 58.695 43.478 0.00 0.00 36.19 2.17
4004 4375 4.038883 ACGCCCTAACGCTCTTATATTTCT 59.961 41.667 0.00 0.00 36.19 2.52
4005 4376 4.989168 CGCCCTAACGCTCTTATATTTCTT 59.011 41.667 0.00 0.00 0.00 2.52
4006 4377 5.465724 CGCCCTAACGCTCTTATATTTCTTT 59.534 40.000 0.00 0.00 0.00 2.52
4007 4378 6.643770 CGCCCTAACGCTCTTATATTTCTTTA 59.356 38.462 0.00 0.00 0.00 1.85
4008 4379 7.148787 CGCCCTAACGCTCTTATATTTCTTTAG 60.149 40.741 0.00 0.00 0.00 1.85
4009 4380 7.871463 GCCCTAACGCTCTTATATTTCTTTAGA 59.129 37.037 0.00 0.00 0.00 2.10
4010 4381 9.413048 CCCTAACGCTCTTATATTTCTTTAGAG 57.587 37.037 0.00 0.00 36.33 2.43
4011 4382 9.413048 CCTAACGCTCTTATATTTCTTTAGAGG 57.587 37.037 0.00 0.00 34.36 3.69
4012 4383 9.413048 CTAACGCTCTTATATTTCTTTAGAGGG 57.587 37.037 11.43 11.43 45.78 4.30
4013 4384 7.598759 ACGCTCTTATATTTCTTTAGAGGGA 57.401 36.000 17.66 0.00 44.18 4.20
4014 4385 7.662897 ACGCTCTTATATTTCTTTAGAGGGAG 58.337 38.462 17.66 0.00 44.18 4.30
4015 4386 7.288158 ACGCTCTTATATTTCTTTAGAGGGAGT 59.712 37.037 17.66 0.00 44.18 3.85
4016 4387 8.794553 CGCTCTTATATTTCTTTAGAGGGAGTA 58.205 37.037 0.00 0.00 44.18 2.59
4024 4395 7.850935 TTTCTTTAGAGGGAGTAAGTGAAGA 57.149 36.000 0.00 0.00 0.00 2.87
4025 4396 7.469537 TTCTTTAGAGGGAGTAAGTGAAGAG 57.530 40.000 0.00 0.00 0.00 2.85
4026 4397 6.791371 TCTTTAGAGGGAGTAAGTGAAGAGA 58.209 40.000 0.00 0.00 0.00 3.10
4027 4398 6.660094 TCTTTAGAGGGAGTAAGTGAAGAGAC 59.340 42.308 0.00 0.00 0.00 3.36
4028 4399 4.668138 AGAGGGAGTAAGTGAAGAGACT 57.332 45.455 0.00 0.00 0.00 3.24
4031 4402 5.014333 AGAGGGAGTAAGTGAAGAGACTACA 59.986 44.000 0.00 0.00 0.00 2.74
4045 4416 5.138276 AGAGACTACAACAGGTGTTCTACA 58.862 41.667 0.00 0.00 41.98 2.74
4046 4417 5.241949 AGAGACTACAACAGGTGTTCTACAG 59.758 44.000 0.00 0.00 41.98 2.74
4047 4418 4.894114 AGACTACAACAGGTGTTCTACAGT 59.106 41.667 0.00 0.00 41.98 3.55
4048 4419 6.066690 AGACTACAACAGGTGTTCTACAGTA 58.933 40.000 0.00 0.00 41.98 2.74
4049 4420 6.016443 AGACTACAACAGGTGTTCTACAGTAC 60.016 42.308 0.00 0.00 41.98 2.73
4095 4466 3.441572 CCAGAAAGGCTAGAAATGGTGTG 59.558 47.826 0.00 0.00 0.00 3.82
4096 4467 4.074970 CAGAAAGGCTAGAAATGGTGTGT 58.925 43.478 0.00 0.00 0.00 3.72
4097 4468 4.074970 AGAAAGGCTAGAAATGGTGTGTG 58.925 43.478 0.00 0.00 0.00 3.82
4102 4473 1.129251 CTAGAAATGGTGTGTGCAGCG 59.871 52.381 0.00 0.00 45.36 5.18
4127 4498 7.217200 GTCTTGCTATATATTCACTTCACCCA 58.783 38.462 0.00 0.00 0.00 4.51
4130 4501 8.450578 TTGCTATATATTCACTTCACCCAAAG 57.549 34.615 0.00 0.00 0.00 2.77
4161 4532 6.127814 ACAATTAGCCTTGATGACACATCTTG 60.128 38.462 11.98 8.24 0.00 3.02
4164 4535 3.076621 GCCTTGATGACACATCTTGACA 58.923 45.455 11.98 0.00 34.27 3.58
4172 4543 3.871006 TGACACATCTTGACAAGTGTGAC 59.129 43.478 33.43 29.76 44.48 3.67
4221 4592 9.423061 ACATCCAGTTTAAGCAAATACAATTTC 57.577 29.630 0.00 0.00 0.00 2.17
4265 4636 5.185454 ACAATGAGTTGCCTTTATCGATCA 58.815 37.500 0.00 0.00 38.96 2.92
4275 4646 4.580580 GCCTTTATCGATCAACAAAGGGAT 59.419 41.667 27.17 6.08 44.72 3.85
4283 4654 4.498241 GATCAACAAAGGGATGAAAAGGC 58.502 43.478 0.00 0.00 0.00 4.35
4295 4666 1.613437 TGAAAAGGCAGGCAGTTAAGC 59.387 47.619 0.00 0.00 0.00 3.09
4300 4671 0.606401 GGCAGGCAGTTAAGCAGACA 60.606 55.000 0.00 0.00 35.83 3.41
4321 4692 6.206243 AGACAGACTGAAAATTGACAGAATGG 59.794 38.462 10.08 7.33 43.62 3.16
4347 4718 5.700402 ATGGTAAGACTAAGAGCCAACAT 57.300 39.130 0.00 0.00 0.00 2.71
4414 4786 6.106648 TGATTTGAATTGTGCCCAAACATA 57.893 33.333 0.00 0.00 33.33 2.29
4419 4791 5.645624 TGAATTGTGCCCAAACATAATACG 58.354 37.500 0.00 0.00 31.93 3.06
4519 4891 2.857186 TAGCTTGTCCATCTGCACAA 57.143 45.000 0.00 0.00 0.00 3.33
4552 4924 6.329496 ACACTTTTGTTCAACGAATCAACAT 58.671 32.000 0.00 0.00 28.43 2.71
4566 4938 8.183104 ACGAATCAACATATAGAGATCTTGGA 57.817 34.615 0.00 0.00 0.00 3.53
4616 4988 5.294306 TCAAGATGAACAACTTCTCACACAC 59.706 40.000 0.00 0.00 32.90 3.82
4645 5017 6.801862 GCAGTAAGCCATTAAGTGTTTTACAG 59.198 38.462 0.00 0.00 37.23 2.74
4649 5021 9.211485 GTAAGCCATTAAGTGTTTTACAGTCTA 57.789 33.333 0.00 0.00 28.76 2.59
4660 5032 5.522460 TGTTTTACAGTCTATCGCATTAGCC 59.478 40.000 0.00 0.00 37.52 3.93
4661 5033 4.929819 TTACAGTCTATCGCATTAGCCA 57.070 40.909 0.00 0.00 37.52 4.75
4663 5035 2.036475 ACAGTCTATCGCATTAGCCAGG 59.964 50.000 0.00 0.00 37.52 4.45
4664 5036 2.036475 CAGTCTATCGCATTAGCCAGGT 59.964 50.000 0.00 0.00 37.52 4.00
4665 5037 2.700897 AGTCTATCGCATTAGCCAGGTT 59.299 45.455 0.00 0.00 37.52 3.50
4666 5038 3.134804 AGTCTATCGCATTAGCCAGGTTT 59.865 43.478 0.00 0.00 37.52 3.27
4667 5039 3.877508 GTCTATCGCATTAGCCAGGTTTT 59.122 43.478 0.00 0.00 37.52 2.43
4668 5040 4.335594 GTCTATCGCATTAGCCAGGTTTTT 59.664 41.667 0.00 0.00 37.52 1.94
4705 5077 0.182775 ATGATAACCGGGGTCTTGCC 59.817 55.000 6.32 0.00 0.00 4.52
4706 5078 1.202099 TGATAACCGGGGTCTTGCCA 61.202 55.000 6.32 0.00 39.65 4.92
4714 5086 1.765074 GGGTCTTGCCAAGGGTACA 59.235 57.895 4.30 0.00 39.65 2.90
4733 5105 6.881602 GGGTACAAAATTATCAAAAATGCCCA 59.118 34.615 0.00 0.00 0.00 5.36
4762 5134 2.881111 AGGCCTACCCTTTGAAAGAC 57.119 50.000 1.29 0.00 43.06 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.496470 AGGAGGCAACCTTTACGTAGAG 59.504 50.000 6.15 6.15 36.86 2.43
12 13 0.992695 AGGGAGGAGGCAACCTTTAC 59.007 55.000 4.85 0.27 40.73 2.01
37 38 5.107453 CGACAAGACAACTATTGTGGAGAAC 60.107 44.000 0.00 0.00 45.52 3.01
39 40 4.038763 ACGACAAGACAACTATTGTGGAGA 59.961 41.667 0.00 0.00 45.52 3.71
40 41 4.307432 ACGACAAGACAACTATTGTGGAG 58.693 43.478 0.00 0.00 45.52 3.86
71 74 4.141459 GGGACCAACTAATTAGAGGAAGGG 60.141 50.000 25.22 16.05 0.00 3.95
75 78 4.955335 TCTGGGACCAACTAATTAGAGGA 58.045 43.478 25.22 9.96 0.00 3.71
196 199 6.555812 AAACGAGTGTAGAAAAGAAATCCC 57.444 37.500 0.00 0.00 0.00 3.85
236 239 3.568443 TCCACCAAAACCTAGGGAAAAC 58.432 45.455 14.81 0.00 0.00 2.43
237 240 3.975479 TCCACCAAAACCTAGGGAAAA 57.025 42.857 14.81 0.00 0.00 2.29
255 258 5.405571 GCTTCCCGAAAAGAAAAGAAATTCC 59.594 40.000 1.47 0.00 0.00 3.01
283 286 2.259618 TCGTGCTTCTCGTAGAAATGC 58.740 47.619 0.00 0.00 33.19 3.56
302 305 4.853924 TCCCTTTTCAGAAAGCACAATC 57.146 40.909 0.00 0.00 40.75 2.67
312 315 1.142060 TCGTGCCTTTCCCTTTTCAGA 59.858 47.619 0.00 0.00 0.00 3.27
331 334 7.992180 TTTCTCTTTTCTGAAAAGCACAATC 57.008 32.000 29.25 0.00 45.79 2.67
332 335 8.659491 GTTTTTCTCTTTTCTGAAAAGCACAAT 58.341 29.630 29.25 0.00 45.79 2.71
345 348 5.006649 GCACATGTTGGGTTTTTCTCTTTTC 59.993 40.000 0.00 0.00 0.00 2.29
357 360 2.559668 CTCATGAAAGCACATGTTGGGT 59.440 45.455 14.70 0.00 45.21 4.51
381 433 1.448985 TTCGGGAAGCATAGTTGTGC 58.551 50.000 0.00 0.00 45.38 4.57
414 466 4.098654 TGATTTTCCCTTTTTCACGAAGCA 59.901 37.500 0.00 0.00 0.00 3.91
419 471 6.902224 AGTTTTGATTTTCCCTTTTTCACG 57.098 33.333 0.00 0.00 0.00 4.35
420 472 7.962373 CACAAGTTTTGATTTTCCCTTTTTCAC 59.038 33.333 0.00 0.00 0.00 3.18
421 473 7.361628 GCACAAGTTTTGATTTTCCCTTTTTCA 60.362 33.333 0.00 0.00 0.00 2.69
430 482 7.890763 TCGTAAAAGCACAAGTTTTGATTTTC 58.109 30.769 18.33 11.03 31.85 2.29
438 491 3.003378 GCCTCTCGTAAAAGCACAAGTTT 59.997 43.478 0.00 0.00 0.00 2.66
473 526 4.402155 AGCACACATGGTTTCTTTTTCAGA 59.598 37.500 0.00 0.00 30.39 3.27
477 530 6.403866 TCATAGCACACATGGTTTCTTTTT 57.596 33.333 0.00 0.00 37.77 1.94
478 531 6.403866 TTCATAGCACACATGGTTTCTTTT 57.596 33.333 0.00 0.00 37.77 2.27
482 535 4.622740 GCTTTTCATAGCACACATGGTTTC 59.377 41.667 0.00 0.00 40.89 2.78
486 539 3.853831 TGCTTTTCATAGCACACATGG 57.146 42.857 0.00 0.00 45.72 3.66
533 586 8.233868 ACGAAAACCTCAAAATTTTTCCAAAAG 58.766 29.630 0.00 0.00 36.35 2.27
541 594 9.737427 AAACAAAAACGAAAACCTCAAAATTTT 57.263 22.222 0.00 0.00 0.00 1.82
542 595 9.388346 GAAACAAAAACGAAAACCTCAAAATTT 57.612 25.926 0.00 0.00 0.00 1.82
543 596 8.018520 GGAAACAAAAACGAAAACCTCAAAATT 58.981 29.630 0.00 0.00 0.00 1.82
544 597 7.173390 TGGAAACAAAAACGAAAACCTCAAAAT 59.827 29.630 0.00 0.00 37.44 1.82
549 602 5.165676 AGTGGAAACAAAAACGAAAACCTC 58.834 37.500 0.00 0.00 46.06 3.85
550 603 5.142061 AGTGGAAACAAAAACGAAAACCT 57.858 34.783 0.00 0.00 46.06 3.50
619 673 2.809119 TCGATGCGCCTTTTGTCTAAAA 59.191 40.909 4.18 0.00 34.75 1.52
620 674 2.418692 TCGATGCGCCTTTTGTCTAAA 58.581 42.857 4.18 0.00 0.00 1.85
623 677 1.069227 GTTTCGATGCGCCTTTTGTCT 60.069 47.619 4.18 0.00 0.00 3.41
624 678 1.069227 AGTTTCGATGCGCCTTTTGTC 60.069 47.619 4.18 0.00 0.00 3.18
625 679 0.951558 AGTTTCGATGCGCCTTTTGT 59.048 45.000 4.18 0.00 0.00 2.83
632 690 4.670621 CCATGTTAATAAGTTTCGATGCGC 59.329 41.667 0.00 0.00 0.00 6.09
708 766 4.274950 GGAGTTTTGTCCTCGTTCAAATCA 59.725 41.667 0.00 0.00 34.30 2.57
727 785 1.080498 TCCACCCACCTTATCTGGAGT 59.920 52.381 0.00 0.00 0.00 3.85
733 791 2.224548 GCATAGGTCCACCCACCTTATC 60.225 54.545 0.00 0.00 45.24 1.75
744 802 3.161866 GGGAAACTTTTGCATAGGTCCA 58.838 45.455 16.46 0.00 0.00 4.02
745 803 2.496070 GGGGAAACTTTTGCATAGGTCC 59.504 50.000 10.49 10.49 0.00 4.46
746 804 3.431415 AGGGGAAACTTTTGCATAGGTC 58.569 45.455 0.00 0.00 0.00 3.85
747 805 3.542969 AGGGGAAACTTTTGCATAGGT 57.457 42.857 0.00 0.00 0.00 3.08
748 806 4.890158 AAAGGGGAAACTTTTGCATAGG 57.110 40.909 0.00 0.00 37.39 2.57
749 807 6.993079 AGTTAAAGGGGAAACTTTTGCATAG 58.007 36.000 0.00 0.00 40.82 2.23
750 808 6.987403 AGTTAAAGGGGAAACTTTTGCATA 57.013 33.333 0.00 0.00 40.82 3.14
751 809 5.887214 AGTTAAAGGGGAAACTTTTGCAT 57.113 34.783 0.00 0.00 40.82 3.96
752 810 5.894964 ACTAGTTAAAGGGGAAACTTTTGCA 59.105 36.000 0.00 0.00 40.82 4.08
753 811 6.401047 ACTAGTTAAAGGGGAAACTTTTGC 57.599 37.500 0.00 0.00 40.82 3.68
754 812 9.661563 AAAAACTAGTTAAAGGGGAAACTTTTG 57.338 29.630 8.92 0.00 40.82 2.44
792 850 5.485620 ACGAAATCACTAGTTAAAGGGGAC 58.514 41.667 0.00 0.00 0.00 4.46
793 851 5.750352 ACGAAATCACTAGTTAAAGGGGA 57.250 39.130 0.00 0.00 0.00 4.81
794 852 6.206048 ACAAACGAAATCACTAGTTAAAGGGG 59.794 38.462 0.00 0.00 0.00 4.79
795 853 7.198306 ACAAACGAAATCACTAGTTAAAGGG 57.802 36.000 0.00 0.00 0.00 3.95
796 854 9.511144 AAAACAAACGAAATCACTAGTTAAAGG 57.489 29.630 0.00 0.00 0.00 3.11
825 883 9.801873 CTGAAGAAAAATGAAACAAGTTTCCTA 57.198 29.630 19.63 5.85 46.15 2.94
846 904 4.326817 CGCTCTGAGTTTCTCAATCTGAAG 59.673 45.833 6.53 0.00 40.18 3.02
928 996 1.194781 TGCTCCTCCTGGGAAGTGAC 61.195 60.000 0.00 0.00 44.58 3.67
929 997 0.906756 CTGCTCCTCCTGGGAAGTGA 60.907 60.000 0.00 0.00 44.58 3.41
930 998 1.601171 CTGCTCCTCCTGGGAAGTG 59.399 63.158 0.00 0.00 44.58 3.16
931 999 2.297129 GCTGCTCCTCCTGGGAAGT 61.297 63.158 0.00 0.00 44.58 3.01
932 1000 2.296365 TGCTGCTCCTCCTGGGAAG 61.296 63.158 0.00 0.00 44.58 3.46
933 1001 2.203983 TGCTGCTCCTCCTGGGAA 60.204 61.111 0.00 0.00 44.58 3.97
934 1002 3.005539 GTGCTGCTCCTCCTGGGA 61.006 66.667 0.00 0.00 42.77 4.37
935 1003 4.463879 CGTGCTGCTCCTCCTGGG 62.464 72.222 0.00 0.00 0.00 4.45
936 1004 3.368190 CTCGTGCTGCTCCTCCTGG 62.368 68.421 0.00 0.00 0.00 4.45
937 1005 2.183811 CTCGTGCTGCTCCTCCTG 59.816 66.667 0.00 0.00 0.00 3.86
975 1046 3.151022 CCCCACTCTCTCCTCGGC 61.151 72.222 0.00 0.00 0.00 5.54
977 1048 0.323908 AGTTCCCCACTCTCTCCTCG 60.324 60.000 0.00 0.00 0.00 4.63
978 1049 1.190643 CAGTTCCCCACTCTCTCCTC 58.809 60.000 0.00 0.00 30.92 3.71
1108 1199 1.673337 GAAAGTAAAGCCGCGGGGT 60.673 57.895 29.38 10.63 34.97 4.95
1111 1202 0.391263 AGAGGAAAGTAAAGCCGCGG 60.391 55.000 24.05 24.05 0.00 6.46
1112 1203 1.000145 GAGAGGAAAGTAAAGCCGCG 59.000 55.000 0.00 0.00 0.00 6.46
1113 1204 2.003301 CAGAGAGGAAAGTAAAGCCGC 58.997 52.381 0.00 0.00 0.00 6.53
1114 1205 3.594603 TCAGAGAGGAAAGTAAAGCCG 57.405 47.619 0.00 0.00 0.00 5.52
1115 1206 4.447290 GGATCAGAGAGGAAAGTAAAGCC 58.553 47.826 0.00 0.00 0.00 4.35
1116 1207 4.447290 GGGATCAGAGAGGAAAGTAAAGC 58.553 47.826 0.00 0.00 0.00 3.51
1117 1208 4.442192 CGGGGATCAGAGAGGAAAGTAAAG 60.442 50.000 0.00 0.00 0.00 1.85
1121 1212 1.273324 ACGGGGATCAGAGAGGAAAGT 60.273 52.381 0.00 0.00 0.00 2.66
1125 1216 0.395862 GTGACGGGGATCAGAGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
1126 1217 0.396417 AGTGACGGGGATCAGAGAGG 60.396 60.000 0.00 0.00 0.00 3.69
1127 1218 1.028905 GAGTGACGGGGATCAGAGAG 58.971 60.000 0.00 0.00 0.00 3.20
1128 1219 0.395862 GGAGTGACGGGGATCAGAGA 60.396 60.000 0.00 0.00 0.00 3.10
1129 1220 1.395826 GGGAGTGACGGGGATCAGAG 61.396 65.000 0.00 0.00 0.00 3.35
1130 1221 1.381327 GGGAGTGACGGGGATCAGA 60.381 63.158 0.00 0.00 0.00 3.27
1131 1222 2.435693 GGGGAGTGACGGGGATCAG 61.436 68.421 0.00 0.00 0.00 2.90
1132 1223 2.365105 GGGGAGTGACGGGGATCA 60.365 66.667 0.00 0.00 0.00 2.92
1133 1224 2.041819 AGGGGAGTGACGGGGATC 60.042 66.667 0.00 0.00 0.00 3.36
1134 1225 2.041819 GAGGGGAGTGACGGGGAT 60.042 66.667 0.00 0.00 0.00 3.85
1135 1226 4.393778 GGAGGGGAGTGACGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
1147 1238 0.759346 CACGATTAGGAAGGGGAGGG 59.241 60.000 0.00 0.00 0.00 4.30
1174 1265 2.048127 AACTCTGGAACTCCGCGC 60.048 61.111 0.00 0.00 39.43 6.86
1234 1325 1.668237 GGAAAGAGCCGAGAAAGATGC 59.332 52.381 0.00 0.00 0.00 3.91
1247 1338 2.409948 AAGGAATGCGAGGGAAAGAG 57.590 50.000 0.00 0.00 0.00 2.85
1277 1368 6.816134 TCTGCACAAATTACAGATGCTAAA 57.184 33.333 0.00 0.00 35.58 1.85
1309 1403 2.494073 AGAGGACCGAGTCAATTCAGTC 59.506 50.000 6.41 0.00 33.68 3.51
1311 1405 2.232452 ACAGAGGACCGAGTCAATTCAG 59.768 50.000 6.41 1.87 33.68 3.02
1548 1653 2.629617 CCAGACCAAAGCAAACCAGAAT 59.370 45.455 0.00 0.00 0.00 2.40
1564 1669 0.654683 CTGCGCAAGAATAGCCAGAC 59.345 55.000 13.05 0.00 43.02 3.51
1567 1672 1.302366 CATCTGCGCAAGAATAGCCA 58.698 50.000 13.05 0.00 38.79 4.75
1568 1673 0.040603 GCATCTGCGCAAGAATAGCC 60.041 55.000 13.05 0.00 38.79 3.93
1571 1676 1.672363 CTTGGCATCTGCGCAAGAATA 59.328 47.619 13.05 0.00 44.55 1.75
1579 1684 0.729116 ATTCGAACTTGGCATCTGCG 59.271 50.000 0.00 0.00 43.26 5.18
1588 1693 3.057315 AGGCCATTGTCAATTCGAACTTG 60.057 43.478 5.01 6.97 0.00 3.16
1590 1695 2.795329 AGGCCATTGTCAATTCGAACT 58.205 42.857 5.01 0.00 0.00 3.01
1614 1719 6.694447 TGGGTATCACTACAAAAGTAGACAC 58.306 40.000 9.43 0.00 35.76 3.67
1621 1726 6.150976 TCTGCATTTGGGTATCACTACAAAAG 59.849 38.462 0.00 0.00 36.53 2.27
1625 1731 4.835284 TCTGCATTTGGGTATCACTACA 57.165 40.909 0.00 0.00 0.00 2.74
1634 1740 4.032960 TGACTACATTCTGCATTTGGGT 57.967 40.909 0.00 0.00 0.00 4.51
1699 1812 6.428465 TCCATTTTAATTGTCGCTCACTTACA 59.572 34.615 0.00 0.00 0.00 2.41
1700 1813 6.837992 TCCATTTTAATTGTCGCTCACTTAC 58.162 36.000 0.00 0.00 0.00 2.34
1709 1857 5.359576 TCCCTCCAATCCATTTTAATTGTCG 59.640 40.000 0.00 0.00 32.20 4.35
1719 1867 2.858644 TGGTACTCCCTCCAATCCATT 58.141 47.619 0.00 0.00 0.00 3.16
1723 1871 5.941788 ACAAATATGGTACTCCCTCCAATC 58.058 41.667 0.00 0.00 37.27 2.67
1726 1874 6.634039 GCTTTACAAATATGGTACTCCCTCCA 60.634 42.308 0.00 0.00 38.14 3.86
1836 1984 4.468153 ACAGGAAGTATGGACCTCTTCTTC 59.532 45.833 17.38 13.45 38.02 2.87
1866 2014 6.367695 CACATGTACTCACTTTCAATACCGAA 59.632 38.462 0.00 0.00 0.00 4.30
1877 2025 5.102953 ATGTATGGCACATGTACTCACTT 57.897 39.130 0.00 0.00 46.41 3.16
2133 2288 4.237724 CTGCTGTCGACTCATAGTTTTCA 58.762 43.478 17.92 0.00 0.00 2.69
2282 2437 7.707624 TTGATTCCAAAGCACTGAAGATTAT 57.292 32.000 0.00 0.00 0.00 1.28
2429 2585 5.560724 TTCATTCTGAACCCTTCTACAAGG 58.439 41.667 0.00 0.00 39.24 3.61
2460 2616 9.734620 CATAAGTCATGTCAAGTCAAAGAAAAA 57.265 29.630 0.00 0.00 0.00 1.94
2534 2711 0.032952 CGACGTTCACCTTTCCCAGA 59.967 55.000 0.00 0.00 0.00 3.86
2637 2814 9.802039 AGTTTTACATAGTGGAATAGTGGAAAA 57.198 29.630 0.00 0.00 31.99 2.29
2638 2815 9.226606 CAGTTTTACATAGTGGAATAGTGGAAA 57.773 33.333 0.00 0.00 0.00 3.13
2639 2816 8.380099 ACAGTTTTACATAGTGGAATAGTGGAA 58.620 33.333 5.56 0.00 30.05 3.53
2640 2817 7.913789 ACAGTTTTACATAGTGGAATAGTGGA 58.086 34.615 5.56 0.00 30.05 4.02
2641 2818 8.041323 AGACAGTTTTACATAGTGGAATAGTGG 58.959 37.037 5.56 0.00 30.05 4.00
2647 2824 8.526147 GGTAGTAGACAGTTTTACATAGTGGAA 58.474 37.037 0.00 0.00 0.00 3.53
2648 2825 7.123247 GGGTAGTAGACAGTTTTACATAGTGGA 59.877 40.741 0.00 0.00 0.00 4.02
2649 2826 7.263496 GGGTAGTAGACAGTTTTACATAGTGG 58.737 42.308 0.00 0.00 0.00 4.00
2650 2827 7.263496 GGGGTAGTAGACAGTTTTACATAGTG 58.737 42.308 0.60 0.00 0.00 2.74
2651 2828 6.382282 GGGGGTAGTAGACAGTTTTACATAGT 59.618 42.308 0.60 0.00 0.00 2.12
2652 2829 6.460676 CGGGGGTAGTAGACAGTTTTACATAG 60.461 46.154 0.60 0.00 0.00 2.23
2653 2830 5.360714 CGGGGGTAGTAGACAGTTTTACATA 59.639 44.000 0.60 0.00 0.00 2.29
2654 2831 4.161001 CGGGGGTAGTAGACAGTTTTACAT 59.839 45.833 0.60 0.00 0.00 2.29
2655 2832 3.511146 CGGGGGTAGTAGACAGTTTTACA 59.489 47.826 0.60 0.00 0.00 2.41
2656 2833 3.511540 ACGGGGGTAGTAGACAGTTTTAC 59.488 47.826 0.00 0.00 0.00 2.01
2657 2834 3.763897 GACGGGGGTAGTAGACAGTTTTA 59.236 47.826 0.00 0.00 0.00 1.52
2658 2835 2.564504 GACGGGGGTAGTAGACAGTTTT 59.435 50.000 0.00 0.00 0.00 2.43
2659 2836 2.174360 GACGGGGGTAGTAGACAGTTT 58.826 52.381 0.00 0.00 0.00 2.66
2660 2837 1.618074 GGACGGGGGTAGTAGACAGTT 60.618 57.143 0.00 0.00 0.00 3.16
2661 2838 0.033699 GGACGGGGGTAGTAGACAGT 60.034 60.000 0.00 0.00 0.00 3.55
2662 2839 1.099879 CGGACGGGGGTAGTAGACAG 61.100 65.000 0.00 0.00 0.00 3.51
2663 2840 1.077501 CGGACGGGGGTAGTAGACA 60.078 63.158 0.00 0.00 0.00 3.41
2664 2841 1.825622 CCGGACGGGGGTAGTAGAC 60.826 68.421 0.00 0.00 0.00 2.59
2665 2842 2.597340 CCGGACGGGGGTAGTAGA 59.403 66.667 0.00 0.00 0.00 2.59
2675 2852 0.745486 GGGACAATAAACCCGGACGG 60.745 60.000 0.73 3.25 36.56 4.79
2676 2853 0.745486 GGGGACAATAAACCCGGACG 60.745 60.000 0.73 0.00 46.42 4.79
2677 2854 0.394762 GGGGGACAATAAACCCGGAC 60.395 60.000 0.73 0.00 46.42 4.79
2678 2855 2.000983 GGGGGACAATAAACCCGGA 58.999 57.895 0.73 0.00 46.42 5.14
2679 2856 4.670199 GGGGGACAATAAACCCGG 57.330 61.111 0.00 0.00 46.42 5.73
2698 2875 4.548513 CGGGAGAGAGGGAGGGGG 62.549 77.778 0.00 0.00 0.00 5.40
2705 2882 2.351336 AAATACGCGCGGGAGAGAGG 62.351 60.000 35.22 2.69 33.13 3.69
2706 2883 0.527817 AAAATACGCGCGGGAGAGAG 60.528 55.000 35.22 3.55 35.30 3.20
2707 2884 0.804544 CAAAATACGCGCGGGAGAGA 60.805 55.000 35.22 11.89 0.00 3.10
2708 2885 1.636340 CAAAATACGCGCGGGAGAG 59.364 57.895 35.22 15.10 0.00 3.20
2709 2886 1.812093 CCAAAATACGCGCGGGAGA 60.812 57.895 35.22 16.54 0.00 3.71
2710 2887 2.707039 CCAAAATACGCGCGGGAG 59.293 61.111 35.22 16.44 0.00 4.30
2711 2888 2.820479 CCCAAAATACGCGCGGGA 60.820 61.111 35.22 22.16 39.44 5.14
2712 2889 3.103354 GACCCAAAATACGCGCGGG 62.103 63.158 35.22 24.72 43.02 6.13
2713 2890 1.913451 TTGACCCAAAATACGCGCGG 61.913 55.000 35.22 15.89 0.00 6.46
2714 2891 0.110147 TTTGACCCAAAATACGCGCG 60.110 50.000 30.96 30.96 29.89 6.86
2715 2892 2.053282 TTTTGACCCAAAATACGCGC 57.947 45.000 5.73 0.00 38.24 6.86
2797 3140 5.814705 CGAGGAAGCTCTTTCAGATACAAAT 59.185 40.000 0.00 0.00 37.54 2.32
2817 3160 6.920569 AGCACCAAAAATTATACTACGAGG 57.079 37.500 0.00 0.00 0.00 4.63
2887 3230 7.421499 GGGTTTATTAGGCCCTCTCTTATTCTT 60.421 40.741 0.00 0.00 39.31 2.52
2889 3232 6.239396 GGGTTTATTAGGCCCTCTCTTATTC 58.761 44.000 0.00 0.00 39.31 1.75
2898 3241 0.841961 GTCCGGGTTTATTAGGCCCT 59.158 55.000 0.00 0.00 40.22 5.19
2918 3261 5.163066 GGTCTCTTATCCCACTACTACCTCT 60.163 48.000 0.00 0.00 0.00 3.69
2922 3265 4.278919 GCAGGTCTCTTATCCCACTACTAC 59.721 50.000 0.00 0.00 0.00 2.73
2933 3276 2.928334 CATTGCTGGCAGGTCTCTTAT 58.072 47.619 17.64 0.00 0.00 1.73
3103 3446 7.880713 TCAAACTTGCACTACCATATAAGTTGA 59.119 33.333 0.00 0.00 38.10 3.18
3223 3571 9.109393 GGCTGTATATTCATTTGACTTGTTCTA 57.891 33.333 0.00 0.00 0.00 2.10
3233 3581 8.632679 AGGTAATTGTGGCTGTATATTCATTTG 58.367 33.333 0.00 0.00 0.00 2.32
3311 3666 9.651913 GGAAAATAATCAGAACATGGCTTTTAA 57.348 29.630 0.00 0.00 0.00 1.52
3415 3771 3.779759 TGTTGTTGCAATTCCTGTTGAC 58.220 40.909 0.59 0.00 0.00 3.18
3450 3807 8.691797 TGTTTTGAAGAAGGCACTATAAAAACT 58.308 29.630 18.13 0.00 38.49 2.66
3486 3843 8.627208 AATGTAATTAGCATCTCCAATACAGG 57.373 34.615 0.00 0.00 32.46 4.00
3528 3885 3.072330 TGAACCAACATCTCCAGTTGCTA 59.928 43.478 0.00 0.00 43.74 3.49
3600 3963 1.063567 AGGGGACGAGCATAGAGAACT 60.064 52.381 0.00 0.00 0.00 3.01
3697 4063 4.559153 GCAACTGCATTGACAATAAGGTT 58.441 39.130 0.00 3.66 41.23 3.50
3812 4183 7.732140 TGGGATGTAAATCTCTCATCTAGTCAT 59.268 37.037 0.00 0.00 38.28 3.06
3817 4188 7.018769 TGGATGGGATGTAAATCTCTCATCTA 58.981 38.462 11.11 3.87 38.28 1.98
3864 4235 0.621082 TGGGCGGAATACAACCATCA 59.379 50.000 0.00 0.00 0.00 3.07
3889 4260 4.219944 AGCTGGATGGCAATTATATGCTTG 59.780 41.667 0.00 0.00 45.68 4.01
3941 4312 9.817809 ACGCTCTTATATTTCTTTACAATGAGA 57.182 29.630 0.00 0.00 0.00 3.27
3952 4323 9.685828 GAGTGATCTAAACGCTCTTATATTTCT 57.314 33.333 0.00 0.00 40.40 2.52
3953 4324 9.464714 TGAGTGATCTAAACGCTCTTATATTTC 57.535 33.333 0.00 0.00 42.89 2.17
3954 4325 9.817809 TTGAGTGATCTAAACGCTCTTATATTT 57.182 29.630 0.00 0.00 42.89 1.40
3955 4326 9.817809 TTTGAGTGATCTAAACGCTCTTATATT 57.182 29.630 0.00 0.00 42.89 1.28
3956 4327 9.250624 GTTTGAGTGATCTAAACGCTCTTATAT 57.749 33.333 0.00 0.00 42.89 0.86
3957 4328 7.431376 CGTTTGAGTGATCTAAACGCTCTTATA 59.569 37.037 17.69 0.00 46.32 0.98
3958 4329 6.253727 CGTTTGAGTGATCTAAACGCTCTTAT 59.746 38.462 17.69 0.00 46.32 1.73
3959 4330 5.571741 CGTTTGAGTGATCTAAACGCTCTTA 59.428 40.000 17.69 0.00 46.32 2.10
3960 4331 4.386049 CGTTTGAGTGATCTAAACGCTCTT 59.614 41.667 17.69 0.00 46.32 2.85
3961 4332 3.921021 CGTTTGAGTGATCTAAACGCTCT 59.079 43.478 17.69 0.00 46.32 4.09
3962 4333 4.232641 CGTTTGAGTGATCTAAACGCTC 57.767 45.455 17.69 0.00 46.32 5.03
3966 4337 3.335579 AGGGCGTTTGAGTGATCTAAAC 58.664 45.455 0.00 0.50 0.00 2.01
3967 4338 3.695830 AGGGCGTTTGAGTGATCTAAA 57.304 42.857 0.00 0.00 0.00 1.85
3968 4339 4.501071 GTTAGGGCGTTTGAGTGATCTAA 58.499 43.478 0.00 0.00 0.00 2.10
3969 4340 3.428452 CGTTAGGGCGTTTGAGTGATCTA 60.428 47.826 0.00 0.00 0.00 1.98
3970 4341 2.674177 CGTTAGGGCGTTTGAGTGATCT 60.674 50.000 0.00 0.00 0.00 2.75
3971 4342 1.659098 CGTTAGGGCGTTTGAGTGATC 59.341 52.381 0.00 0.00 0.00 2.92
3972 4343 1.722011 CGTTAGGGCGTTTGAGTGAT 58.278 50.000 0.00 0.00 0.00 3.06
3973 4344 0.947180 GCGTTAGGGCGTTTGAGTGA 60.947 55.000 0.00 0.00 0.00 3.41
3974 4345 0.949105 AGCGTTAGGGCGTTTGAGTG 60.949 55.000 0.00 0.00 38.18 3.51
3975 4346 0.669625 GAGCGTTAGGGCGTTTGAGT 60.670 55.000 0.00 0.00 38.18 3.41
3976 4347 0.389948 AGAGCGTTAGGGCGTTTGAG 60.390 55.000 0.00 0.00 38.18 3.02
3977 4348 0.034337 AAGAGCGTTAGGGCGTTTGA 59.966 50.000 0.00 0.00 38.18 2.69
3978 4349 1.717194 TAAGAGCGTTAGGGCGTTTG 58.283 50.000 0.00 0.00 38.18 2.93
3979 4350 2.685850 ATAAGAGCGTTAGGGCGTTT 57.314 45.000 0.00 0.00 38.18 3.60
3980 4351 4.332428 AATATAAGAGCGTTAGGGCGTT 57.668 40.909 0.00 0.00 38.18 4.84
3981 4352 4.038883 AGAAATATAAGAGCGTTAGGGCGT 59.961 41.667 0.00 0.00 38.18 5.68
3982 4353 4.557205 AGAAATATAAGAGCGTTAGGGCG 58.443 43.478 0.00 0.00 38.18 6.13
3983 4354 6.862711 AAAGAAATATAAGAGCGTTAGGGC 57.137 37.500 0.00 0.00 0.00 5.19
3984 4355 9.413048 CTCTAAAGAAATATAAGAGCGTTAGGG 57.587 37.037 0.00 0.00 0.00 3.53
3985 4356 9.413048 CCTCTAAAGAAATATAAGAGCGTTAGG 57.587 37.037 0.00 0.00 33.80 2.69
3986 4357 9.413048 CCCTCTAAAGAAATATAAGAGCGTTAG 57.587 37.037 0.00 0.00 33.80 2.34
3987 4358 9.139734 TCCCTCTAAAGAAATATAAGAGCGTTA 57.860 33.333 0.00 0.00 33.80 3.18
3988 4359 8.019656 TCCCTCTAAAGAAATATAAGAGCGTT 57.980 34.615 0.00 0.00 33.80 4.84
3989 4360 7.288158 ACTCCCTCTAAAGAAATATAAGAGCGT 59.712 37.037 0.00 0.00 33.80 5.07
3990 4361 7.662897 ACTCCCTCTAAAGAAATATAAGAGCG 58.337 38.462 0.00 0.00 33.80 5.03
3998 4369 9.543231 TCTTCACTTACTCCCTCTAAAGAAATA 57.457 33.333 0.00 0.00 0.00 1.40
3999 4370 8.437274 TCTTCACTTACTCCCTCTAAAGAAAT 57.563 34.615 0.00 0.00 0.00 2.17
4000 4371 7.728981 TCTCTTCACTTACTCCCTCTAAAGAAA 59.271 37.037 0.00 0.00 0.00 2.52
4001 4372 7.177041 GTCTCTTCACTTACTCCCTCTAAAGAA 59.823 40.741 0.00 0.00 0.00 2.52
4002 4373 6.660094 GTCTCTTCACTTACTCCCTCTAAAGA 59.340 42.308 0.00 0.00 0.00 2.52
4003 4374 6.661805 AGTCTCTTCACTTACTCCCTCTAAAG 59.338 42.308 0.00 0.00 0.00 1.85
4004 4375 6.553857 AGTCTCTTCACTTACTCCCTCTAAA 58.446 40.000 0.00 0.00 0.00 1.85
4005 4376 6.142259 AGTCTCTTCACTTACTCCCTCTAA 57.858 41.667 0.00 0.00 0.00 2.10
4006 4377 5.782677 AGTCTCTTCACTTACTCCCTCTA 57.217 43.478 0.00 0.00 0.00 2.43
4007 4378 4.668138 AGTCTCTTCACTTACTCCCTCT 57.332 45.455 0.00 0.00 0.00 3.69
4008 4379 5.254901 TGTAGTCTCTTCACTTACTCCCTC 58.745 45.833 0.00 0.00 0.00 4.30
4009 4380 5.258216 TGTAGTCTCTTCACTTACTCCCT 57.742 43.478 0.00 0.00 0.00 4.20
4010 4381 5.243283 TGTTGTAGTCTCTTCACTTACTCCC 59.757 44.000 0.00 0.00 0.00 4.30
4011 4382 6.328641 TGTTGTAGTCTCTTCACTTACTCC 57.671 41.667 0.00 0.00 0.00 3.85
4012 4383 6.016108 ACCTGTTGTAGTCTCTTCACTTACTC 60.016 42.308 0.00 0.00 0.00 2.59
4013 4384 5.834204 ACCTGTTGTAGTCTCTTCACTTACT 59.166 40.000 0.00 0.00 0.00 2.24
4014 4385 5.921408 CACCTGTTGTAGTCTCTTCACTTAC 59.079 44.000 0.00 0.00 0.00 2.34
4015 4386 5.597182 ACACCTGTTGTAGTCTCTTCACTTA 59.403 40.000 0.00 0.00 36.32 2.24
4016 4387 4.406003 ACACCTGTTGTAGTCTCTTCACTT 59.594 41.667 0.00 0.00 36.32 3.16
4017 4388 3.961408 ACACCTGTTGTAGTCTCTTCACT 59.039 43.478 0.00 0.00 36.32 3.41
4018 4389 4.323553 ACACCTGTTGTAGTCTCTTCAC 57.676 45.455 0.00 0.00 36.32 3.18
4019 4390 4.649674 AGAACACCTGTTGTAGTCTCTTCA 59.350 41.667 0.00 0.00 37.51 3.02
4020 4391 5.203060 AGAACACCTGTTGTAGTCTCTTC 57.797 43.478 0.00 0.00 37.51 2.87
4021 4392 5.597182 TGTAGAACACCTGTTGTAGTCTCTT 59.403 40.000 0.00 0.00 37.51 2.85
4022 4393 5.138276 TGTAGAACACCTGTTGTAGTCTCT 58.862 41.667 0.00 0.00 37.51 3.10
4023 4394 5.009811 ACTGTAGAACACCTGTTGTAGTCTC 59.990 44.000 0.00 0.00 37.51 3.36
4024 4395 4.894114 ACTGTAGAACACCTGTTGTAGTCT 59.106 41.667 0.00 0.00 37.51 3.24
4025 4396 5.197682 ACTGTAGAACACCTGTTGTAGTC 57.802 43.478 0.00 0.00 37.51 2.59
4026 4397 5.832060 AGTACTGTAGAACACCTGTTGTAGT 59.168 40.000 0.00 0.00 37.51 2.73
4027 4398 6.328641 AGTACTGTAGAACACCTGTTGTAG 57.671 41.667 0.00 0.00 37.51 2.74
4028 4399 6.720112 AAGTACTGTAGAACACCTGTTGTA 57.280 37.500 0.00 0.00 37.51 2.41
4102 4473 7.217200 TGGGTGAAGTGAATATATAGCAAGAC 58.783 38.462 0.00 0.00 0.00 3.01
4127 4498 8.893727 GTCATCAAGGCTAATTGTATGTACTTT 58.106 33.333 0.00 0.00 0.00 2.66
4130 4501 7.279981 TGTGTCATCAAGGCTAATTGTATGTAC 59.720 37.037 0.00 0.00 0.00 2.90
4164 4535 3.270877 GTTGTCAGTCCAAGTCACACTT 58.729 45.455 0.00 0.00 39.39 3.16
4221 4592 7.466746 TTGTCTCCATGGAAAATAAGAAAGG 57.533 36.000 17.00 0.00 0.00 3.11
4255 4626 7.695480 TTTCATCCCTTTGTTGATCGATAAA 57.305 32.000 0.00 4.93 0.00 1.40
4265 4636 2.634453 CCTGCCTTTTCATCCCTTTGTT 59.366 45.455 0.00 0.00 0.00 2.83
4275 4646 1.613437 GCTTAACTGCCTGCCTTTTCA 59.387 47.619 0.00 0.00 0.00 2.69
4283 4654 2.072298 GTCTGTCTGCTTAACTGCCTG 58.928 52.381 0.00 0.00 0.00 4.85
4295 4666 6.609237 TTCTGTCAATTTTCAGTCTGTCTG 57.391 37.500 0.00 0.00 44.85 3.51
4300 4671 4.219288 GGCCATTCTGTCAATTTTCAGTCT 59.781 41.667 0.00 0.00 33.89 3.24
4308 4679 4.255510 ACCATAGGCCATTCTGTCAATT 57.744 40.909 5.01 0.00 0.00 2.32
4321 4692 3.641906 TGGCTCTTAGTCTTACCATAGGC 59.358 47.826 0.00 0.00 0.00 3.93
4414 4786 9.712305 CCTATCAAAGATAGAAATGTCCGTATT 57.288 33.333 14.03 0.00 0.00 1.89
4419 4791 8.207545 AGTGTCCTATCAAAGATAGAAATGTCC 58.792 37.037 14.03 0.00 0.00 4.02
4479 4851 8.478775 AGCTATATGTAAAGTGGTCAGATGTA 57.521 34.615 0.00 0.00 0.00 2.29
4491 4863 6.707608 TGCAGATGGACAAGCTATATGTAAAG 59.292 38.462 0.00 0.00 30.32 1.85
4519 4891 5.163794 CGTTGAACAAAAGTGTACCTTCTGT 60.164 40.000 0.00 0.00 35.86 3.41
4530 4902 9.825972 CTATATGTTGATTCGTTGAACAAAAGT 57.174 29.630 0.00 0.00 33.50 2.66
4638 5010 5.666462 TGGCTAATGCGATAGACTGTAAAA 58.334 37.500 3.41 0.00 40.82 1.52
4645 5017 2.821991 ACCTGGCTAATGCGATAGAC 57.178 50.000 0.00 0.00 40.82 2.59
4694 5066 2.598787 TACCCTTGGCAAGACCCCG 61.599 63.158 28.18 10.88 37.83 5.73
4705 5077 8.450180 GGCATTTTTGATAATTTTGTACCCTTG 58.550 33.333 0.00 0.00 0.00 3.61
4706 5078 7.609918 GGGCATTTTTGATAATTTTGTACCCTT 59.390 33.333 0.00 0.00 0.00 3.95
4714 5086 6.777782 TGGACTGGGCATTTTTGATAATTTT 58.222 32.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.