Multiple sequence alignment - TraesCS3D01G017300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G017300 chr3D 100.000 5142 0 0 1 5142 5868978 5874119 0.000000e+00 9496.0
1 TraesCS3D01G017300 chr3D 85.419 1015 126 15 3225 4228 5876697 5875694 0.000000e+00 1035.0
2 TraesCS3D01G017300 chr3D 84.751 905 129 6 1247 2150 5878687 5877791 0.000000e+00 898.0
3 TraesCS3D01G017300 chr3D 84.642 879 109 17 1271 2147 5880325 5879471 0.000000e+00 852.0
4 TraesCS3D01G017300 chr3D 88.889 423 40 6 2135 2556 5879373 5878957 9.870000e-142 514.0
5 TraesCS3D01G017300 chr3D 86.574 432 49 7 2135 2565 5877689 5877266 7.800000e-128 468.0
6 TraesCS3D01G017300 chr3D 77.113 769 135 29 3394 4143 6067827 6068573 1.720000e-109 407.0
7 TraesCS3D01G017300 chr3D 74.908 813 180 17 1306 2097 6030970 6031779 2.950000e-92 350.0
8 TraesCS3D01G017300 chr3D 82.500 200 20 12 2620 2815 5877244 5877056 1.480000e-35 161.0
9 TraesCS3D01G017300 chrUn 92.185 3647 175 47 1250 4840 244505808 244509400 0.000000e+00 5055.0
10 TraesCS3D01G017300 chrUn 84.653 1023 134 18 3225 4228 244512638 244511620 0.000000e+00 998.0
11 TraesCS3D01G017300 chrUn 84.222 881 135 4 1247 2126 244515010 244514133 0.000000e+00 854.0
12 TraesCS3D01G017300 chrUn 84.266 858 112 19 1271 2126 244516651 244515815 0.000000e+00 815.0
13 TraesCS3D01G017300 chrUn 88.758 596 45 9 599 1183 244505202 244505786 0.000000e+00 710.0
14 TraesCS3D01G017300 chrUn 84.848 429 52 9 2135 2556 244515702 244515280 2.210000e-113 420.0
15 TraesCS3D01G017300 chrUn 89.286 224 22 2 4920 5142 244509882 244510104 3.920000e-71 279.0
16 TraesCS3D01G017300 chrUn 90.659 182 14 2 2135 2316 244514027 244513849 6.650000e-59 239.0
17 TraesCS3D01G017300 chrUn 90.351 114 9 2 2620 2731 244513180 244513067 1.150000e-31 148.0
18 TraesCS3D01G017300 chrUn 87.671 73 3 3 2976 3045 244512860 244512791 4.270000e-11 80.5
19 TraesCS3D01G017300 chr3A 93.785 2478 118 10 641 3107 15298221 15295769 0.000000e+00 3690.0
20 TraesCS3D01G017300 chr3A 87.926 1673 94 36 3140 4761 15295765 15294150 0.000000e+00 1871.0
21 TraesCS3D01G017300 chr3A 86.713 1016 115 12 3225 4228 15291461 15292468 0.000000e+00 1110.0
22 TraesCS3D01G017300 chr3A 84.164 903 134 6 1247 2147 15289480 15290375 0.000000e+00 867.0
23 TraesCS3D01G017300 chr3A 83.428 881 111 17 1268 2147 15287851 15288697 0.000000e+00 785.0
24 TraesCS3D01G017300 chr3A 88.124 421 42 7 2137 2556 15288797 15289210 1.290000e-135 494.0
25 TraesCS3D01G017300 chr3A 88.095 420 38 8 2135 2553 15290473 15290881 5.980000e-134 488.0
26 TraesCS3D01G017300 chr3A 90.652 353 22 3 4787 5137 15294153 15293810 4.690000e-125 459.0
27 TraesCS3D01G017300 chr3A 76.613 744 137 25 3425 4149 14925533 14924808 4.860000e-100 375.0
28 TraesCS3D01G017300 chr3A 78.304 507 92 10 1608 2097 15066932 15066427 1.390000e-80 311.0
29 TraesCS3D01G017300 chr3A 78.795 415 63 18 146 555 635531505 635531899 6.610000e-64 255.0
30 TraesCS3D01G017300 chr3A 83.000 200 19 12 2620 2815 15290915 15291103 3.180000e-37 167.0
31 TraesCS3D01G017300 chr3A 90.541 74 4 1 2976 3046 15291236 15291309 1.520000e-15 95.3
32 TraesCS3D01G017300 chr3B 77.503 769 135 27 3394 4143 7482963 7482214 1.320000e-115 427.0
33 TraesCS3D01G017300 chr3B 87.197 289 27 8 183 469 704258042 704257762 2.310000e-83 320.0
34 TraesCS3D01G017300 chr3B 80.094 427 55 12 147 549 151119483 151119063 1.810000e-74 291.0
35 TraesCS3D01G017300 chr3B 84.420 276 22 9 149 411 526735573 526735306 8.550000e-63 252.0
36 TraesCS3D01G017300 chr3B 78.342 374 56 15 149 502 503411409 503411041 8.670000e-53 219.0
37 TraesCS3D01G017300 chr3B 75.949 158 31 3 2904 3056 7595874 7595719 1.990000e-09 75.0
38 TraesCS3D01G017300 chr1B 86.486 333 26 7 147 465 263981675 263981348 1.060000e-91 348.0
39 TraesCS3D01G017300 chr4A 83.820 377 40 10 140 503 395026250 395025882 6.380000e-89 339.0
40 TraesCS3D01G017300 chr4A 83.714 350 40 8 147 482 596787395 596787741 1.070000e-81 315.0
41 TraesCS3D01G017300 chr7A 82.033 423 41 19 144 542 18972509 18972098 1.380000e-85 327.0
42 TraesCS3D01G017300 chr7A 84.969 326 30 8 146 457 75671810 75671490 3.870000e-81 313.0
43 TraesCS3D01G017300 chr7A 97.500 40 1 0 554 593 102521310 102521349 9.240000e-08 69.4
44 TraesCS3D01G017300 chr6A 81.535 417 49 15 149 549 59902856 59902452 8.310000e-83 318.0
45 TraesCS3D01G017300 chr5D 81.250 416 50 8 147 544 381406478 381406883 1.390000e-80 311.0
46 TraesCS3D01G017300 chr5D 83.692 325 34 9 143 461 292695886 292696197 6.510000e-74 289.0
47 TraesCS3D01G017300 chr5D 79.762 336 47 8 193 512 437216905 437216575 1.860000e-54 224.0
48 TraesCS3D01G017300 chr5D 97.500 40 1 0 554 593 331118980 331118941 9.240000e-08 69.4
49 TraesCS3D01G017300 chr5B 83.095 349 46 11 142 484 570938604 570938263 6.470000e-79 305.0
50 TraesCS3D01G017300 chr5B 97.561 41 1 0 554 594 637132281 637132321 2.570000e-08 71.3
51 TraesCS3D01G017300 chr6D 81.299 385 48 12 176 545 456737256 456737631 1.810000e-74 291.0
52 TraesCS3D01G017300 chr6D 79.437 355 47 12 210 542 123124391 123124741 1.440000e-55 228.0
53 TraesCS3D01G017300 chr6D 92.157 51 3 1 542 591 450361092 450361142 2.570000e-08 71.3
54 TraesCS3D01G017300 chr1D 79.233 443 59 13 149 572 471835397 471835825 1.410000e-70 278.0
55 TraesCS3D01G017300 chr5A 81.714 350 44 9 142 478 579869817 579869475 1.820000e-69 274.0
56 TraesCS3D01G017300 chr5A 74.468 376 64 18 190 543 389727248 389727613 3.230000e-27 134.0
57 TraesCS3D01G017300 chr2A 81.657 169 18 7 151 311 193555565 193555728 1.500000e-25 128.0
58 TraesCS3D01G017300 chr2A 95.556 45 2 0 548 592 118440579 118440623 7.140000e-09 73.1
59 TraesCS3D01G017300 chr4D 95.455 44 2 0 548 591 72714228 72714271 2.570000e-08 71.3
60 TraesCS3D01G017300 chr1A 97.561 41 1 0 554 594 148745647 148745607 2.570000e-08 71.3
61 TraesCS3D01G017300 chr1A 93.617 47 1 2 554 598 584890983 584891029 9.240000e-08 69.4
62 TraesCS3D01G017300 chr6B 97.436 39 1 0 554 592 655797793 655797755 3.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G017300 chr3D 5868978 5874119 5141 False 9496.000000 9496 100.000000 1 5142 1 chr3D.!!$F1 5141
1 TraesCS3D01G017300 chr3D 5875694 5880325 4631 True 654.666667 1035 85.462500 1247 4228 6 chr3D.!!$R1 2981
2 TraesCS3D01G017300 chr3D 6067827 6068573 746 False 407.000000 407 77.113000 3394 4143 1 chr3D.!!$F3 749
3 TraesCS3D01G017300 chr3D 6030970 6031779 809 False 350.000000 350 74.908000 1306 2097 1 chr3D.!!$F2 791
4 TraesCS3D01G017300 chrUn 244505202 244510104 4902 False 2014.666667 5055 90.076333 599 5142 3 chrUn.!!$F1 4543
5 TraesCS3D01G017300 chrUn 244511620 244516651 5031 True 507.785714 998 86.667143 1247 4228 7 chrUn.!!$R1 2981
6 TraesCS3D01G017300 chr3A 15293810 15298221 4411 True 2006.666667 3690 90.787667 641 5137 3 chr3A.!!$R3 4496
7 TraesCS3D01G017300 chr3A 15287851 15292468 4617 False 572.328571 1110 86.295000 1247 4228 7 chr3A.!!$F2 2981
8 TraesCS3D01G017300 chr3A 14924808 14925533 725 True 375.000000 375 76.613000 3425 4149 1 chr3A.!!$R1 724
9 TraesCS3D01G017300 chr3A 15066427 15066932 505 True 311.000000 311 78.304000 1608 2097 1 chr3A.!!$R2 489
10 TraesCS3D01G017300 chr3B 7482214 7482963 749 True 427.000000 427 77.503000 3394 4143 1 chr3B.!!$R1 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.032130 TTGCGCGCAACCCAAATTAA 59.968 45.0 40.23 16.85 0.00 1.40 F
176 177 0.107703 TTTGGAGGCCGAGCTATGTG 60.108 55.0 0.00 0.00 0.00 3.21 F
537 538 0.251354 TCTTCATGGTGGCAGAGAGC 59.749 55.0 0.00 0.00 44.65 4.09 F
1340 1362 0.320247 ACGAGCAGAGAGGCTTTGTG 60.320 55.0 0.00 0.00 45.99 3.33 F
2648 4898 0.593518 CAGCTCGATCTGCAGGTACG 60.594 60.0 15.13 16.38 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1062 0.323816 TGGCGGAATTGTAATGCCCA 60.324 50.0 0.00 0.00 45.12 5.36 R
1304 1326 0.919981 CGTCGCTGAGAAGCTTCATC 59.080 55.0 27.57 20.39 0.00 2.92 R
2492 4742 0.169672 CAAACTGATTGGCCAGAGCG 59.830 55.0 5.11 0.00 41.24 5.03 R
2974 5269 0.110192 CTCGCGGCTTCTTGGAAAAC 60.110 55.0 6.13 0.00 0.00 2.43 R
4236 6612 1.361668 CCATCCACTCGGCAAGTTCG 61.362 60.0 0.00 0.00 35.45 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.213483 GTGAACACGTCCAGACACG 58.787 57.895 0.00 0.00 45.65 4.49
42 43 3.449322 CACGTCCGTGGATGTTTTAAG 57.551 47.619 11.04 0.00 41.88 1.85
43 44 3.061322 CACGTCCGTGGATGTTTTAAGA 58.939 45.455 11.04 0.00 41.88 2.10
44 45 3.122948 CACGTCCGTGGATGTTTTAAGAG 59.877 47.826 11.04 0.00 41.88 2.85
45 46 2.671396 CGTCCGTGGATGTTTTAAGAGG 59.329 50.000 0.00 0.00 0.00 3.69
46 47 2.418976 GTCCGTGGATGTTTTAAGAGGC 59.581 50.000 0.00 0.00 0.00 4.70
47 48 2.304761 TCCGTGGATGTTTTAAGAGGCT 59.695 45.455 0.00 0.00 0.00 4.58
48 49 3.081804 CCGTGGATGTTTTAAGAGGCTT 58.918 45.455 0.00 0.00 0.00 4.35
49 50 3.119849 CCGTGGATGTTTTAAGAGGCTTG 60.120 47.826 0.00 0.00 0.00 4.01
50 51 3.751175 CGTGGATGTTTTAAGAGGCTTGA 59.249 43.478 0.00 0.00 0.00 3.02
51 52 4.396166 CGTGGATGTTTTAAGAGGCTTGAT 59.604 41.667 0.00 0.00 0.00 2.57
52 53 5.106157 CGTGGATGTTTTAAGAGGCTTGATT 60.106 40.000 0.00 0.00 0.00 2.57
53 54 6.093495 CGTGGATGTTTTAAGAGGCTTGATTA 59.907 38.462 0.00 0.00 0.00 1.75
54 55 7.361713 CGTGGATGTTTTAAGAGGCTTGATTAA 60.362 37.037 0.00 0.00 0.00 1.40
55 56 8.470002 GTGGATGTTTTAAGAGGCTTGATTAAT 58.530 33.333 0.00 0.00 0.00 1.40
56 57 9.034800 TGGATGTTTTAAGAGGCTTGATTAATT 57.965 29.630 0.00 0.00 0.00 1.40
103 104 7.880195 AGGTTTATAGTCCATCATCATACTTGC 59.120 37.037 0.00 0.00 0.00 4.01
104 105 7.148573 GGTTTATAGTCCATCATCATACTTGCG 60.149 40.741 0.00 0.00 0.00 4.85
105 106 2.487934 AGTCCATCATCATACTTGCGC 58.512 47.619 0.00 0.00 0.00 6.09
106 107 1.193203 GTCCATCATCATACTTGCGCG 59.807 52.381 0.00 0.00 0.00 6.86
107 108 0.110509 CCATCATCATACTTGCGCGC 60.111 55.000 27.26 27.26 0.00 6.86
108 109 0.582960 CATCATCATACTTGCGCGCA 59.417 50.000 33.09 33.09 0.00 6.09
109 110 1.003652 CATCATCATACTTGCGCGCAA 60.004 47.619 40.42 40.42 0.00 4.85
110 111 0.373370 TCATCATACTTGCGCGCAAC 59.627 50.000 40.23 9.10 0.00 4.17
111 112 0.589729 CATCATACTTGCGCGCAACC 60.590 55.000 40.23 8.68 0.00 3.77
112 113 1.714899 ATCATACTTGCGCGCAACCC 61.715 55.000 40.23 8.24 0.00 4.11
113 114 2.359354 ATACTTGCGCGCAACCCA 60.359 55.556 40.23 27.23 0.00 4.51
114 115 1.969064 ATACTTGCGCGCAACCCAA 60.969 52.632 40.23 25.12 0.00 4.12
115 116 1.519751 ATACTTGCGCGCAACCCAAA 61.520 50.000 40.23 23.42 0.00 3.28
116 117 1.519751 TACTTGCGCGCAACCCAAAT 61.520 50.000 40.23 22.71 0.00 2.32
117 118 1.664333 CTTGCGCGCAACCCAAATT 60.664 52.632 40.23 0.00 0.00 1.82
118 119 0.387878 CTTGCGCGCAACCCAAATTA 60.388 50.000 40.23 18.99 0.00 1.40
119 120 0.032130 TTGCGCGCAACCCAAATTAA 59.968 45.000 40.23 16.85 0.00 1.40
120 121 0.244994 TGCGCGCAACCCAAATTAAT 59.755 45.000 34.66 0.00 0.00 1.40
121 122 0.644843 GCGCGCAACCCAAATTAATG 59.355 50.000 29.10 0.00 0.00 1.90
122 123 1.989430 CGCGCAACCCAAATTAATGT 58.011 45.000 8.75 0.00 0.00 2.71
123 124 1.653114 CGCGCAACCCAAATTAATGTG 59.347 47.619 8.75 0.00 0.00 3.21
124 125 1.393196 GCGCAACCCAAATTAATGTGC 59.607 47.619 0.30 0.00 39.87 4.57
125 126 2.930455 GCGCAACCCAAATTAATGTGCT 60.930 45.455 0.30 0.00 42.53 4.40
126 127 2.923020 CGCAACCCAAATTAATGTGCTC 59.077 45.455 0.00 0.00 0.00 4.26
127 128 3.261580 GCAACCCAAATTAATGTGCTCC 58.738 45.455 0.00 0.00 0.00 4.70
128 129 3.306641 GCAACCCAAATTAATGTGCTCCA 60.307 43.478 0.00 0.00 0.00 3.86
129 130 4.497300 CAACCCAAATTAATGTGCTCCAG 58.503 43.478 0.00 0.00 0.00 3.86
130 131 3.778265 ACCCAAATTAATGTGCTCCAGT 58.222 40.909 0.00 0.00 0.00 4.00
131 132 4.929479 ACCCAAATTAATGTGCTCCAGTA 58.071 39.130 0.00 0.00 0.00 2.74
132 133 5.518865 ACCCAAATTAATGTGCTCCAGTAT 58.481 37.500 0.00 0.00 0.00 2.12
133 134 5.594317 ACCCAAATTAATGTGCTCCAGTATC 59.406 40.000 0.00 0.00 0.00 2.24
134 135 5.010012 CCCAAATTAATGTGCTCCAGTATCC 59.990 44.000 0.00 0.00 0.00 2.59
135 136 5.593909 CCAAATTAATGTGCTCCAGTATCCA 59.406 40.000 0.00 0.00 0.00 3.41
136 137 6.460123 CCAAATTAATGTGCTCCAGTATCCAC 60.460 42.308 0.00 0.00 0.00 4.02
137 138 4.835284 TTAATGTGCTCCAGTATCCACA 57.165 40.909 0.00 0.00 41.77 4.17
138 139 2.996249 ATGTGCTCCAGTATCCACAG 57.004 50.000 0.00 0.00 40.99 3.66
139 140 1.644509 TGTGCTCCAGTATCCACAGT 58.355 50.000 0.00 0.00 33.66 3.55
140 141 1.977854 TGTGCTCCAGTATCCACAGTT 59.022 47.619 0.00 0.00 33.66 3.16
141 142 3.169908 TGTGCTCCAGTATCCACAGTTA 58.830 45.455 0.00 0.00 33.66 2.24
142 143 3.580895 TGTGCTCCAGTATCCACAGTTAA 59.419 43.478 0.00 0.00 33.66 2.01
143 144 4.041075 TGTGCTCCAGTATCCACAGTTAAA 59.959 41.667 0.00 0.00 33.66 1.52
144 145 4.392138 GTGCTCCAGTATCCACAGTTAAAC 59.608 45.833 0.00 0.00 0.00 2.01
145 146 3.617263 GCTCCAGTATCCACAGTTAAACG 59.383 47.826 0.00 0.00 0.00 3.60
146 147 3.592059 TCCAGTATCCACAGTTAAACGC 58.408 45.455 0.00 0.00 0.00 4.84
147 148 2.347452 CCAGTATCCACAGTTAAACGCG 59.653 50.000 3.53 3.53 0.00 6.01
148 149 2.347452 CAGTATCCACAGTTAAACGCGG 59.653 50.000 12.47 0.00 0.00 6.46
149 150 2.231964 AGTATCCACAGTTAAACGCGGA 59.768 45.455 12.47 0.00 0.00 5.54
150 151 2.172851 ATCCACAGTTAAACGCGGAA 57.827 45.000 12.47 0.00 0.00 4.30
151 152 1.950828 TCCACAGTTAAACGCGGAAA 58.049 45.000 12.47 0.00 0.00 3.13
152 153 2.496111 TCCACAGTTAAACGCGGAAAT 58.504 42.857 12.47 0.00 0.00 2.17
153 154 2.879646 TCCACAGTTAAACGCGGAAATT 59.120 40.909 12.47 2.25 0.00 1.82
154 155 2.977169 CCACAGTTAAACGCGGAAATTG 59.023 45.455 12.47 10.85 0.00 2.32
155 156 2.403698 CACAGTTAAACGCGGAAATTGC 59.596 45.455 12.47 0.00 0.00 3.56
156 157 2.292292 ACAGTTAAACGCGGAAATTGCT 59.708 40.909 12.47 0.00 0.00 3.91
157 158 3.243267 ACAGTTAAACGCGGAAATTGCTT 60.243 39.130 12.47 0.00 0.00 3.91
158 159 3.733727 CAGTTAAACGCGGAAATTGCTTT 59.266 39.130 12.47 1.23 0.00 3.51
159 160 4.208253 CAGTTAAACGCGGAAATTGCTTTT 59.792 37.500 12.47 0.42 37.52 2.27
160 161 4.208253 AGTTAAACGCGGAAATTGCTTTTG 59.792 37.500 12.47 0.00 35.05 2.44
161 162 1.496934 AACGCGGAAATTGCTTTTGG 58.503 45.000 12.47 0.00 0.00 3.28
162 163 0.671251 ACGCGGAAATTGCTTTTGGA 59.329 45.000 12.47 0.00 0.00 3.53
163 164 1.335872 ACGCGGAAATTGCTTTTGGAG 60.336 47.619 12.47 0.00 0.00 3.86
164 165 1.713597 GCGGAAATTGCTTTTGGAGG 58.286 50.000 0.00 0.00 0.00 4.30
165 166 1.713597 CGGAAATTGCTTTTGGAGGC 58.286 50.000 0.00 0.00 0.00 4.70
166 167 1.672737 CGGAAATTGCTTTTGGAGGCC 60.673 52.381 0.00 0.00 0.00 5.19
167 168 1.672737 GGAAATTGCTTTTGGAGGCCG 60.673 52.381 0.00 0.00 0.00 6.13
168 169 1.272212 GAAATTGCTTTTGGAGGCCGA 59.728 47.619 0.00 0.00 0.00 5.54
169 170 0.890683 AATTGCTTTTGGAGGCCGAG 59.109 50.000 0.00 0.00 0.00 4.63
170 171 1.598701 ATTGCTTTTGGAGGCCGAGC 61.599 55.000 0.00 2.19 0.00 5.03
171 172 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
172 173 1.078426 GCTTTTGGAGGCCGAGCTA 60.078 57.895 0.00 0.00 0.00 3.32
173 174 0.464554 GCTTTTGGAGGCCGAGCTAT 60.465 55.000 0.00 0.00 0.00 2.97
174 175 1.303309 CTTTTGGAGGCCGAGCTATG 58.697 55.000 0.00 0.00 0.00 2.23
175 176 0.618458 TTTTGGAGGCCGAGCTATGT 59.382 50.000 0.00 0.00 0.00 2.29
176 177 0.107703 TTTGGAGGCCGAGCTATGTG 60.108 55.000 0.00 0.00 0.00 3.21
177 178 1.264749 TTGGAGGCCGAGCTATGTGT 61.265 55.000 0.00 0.00 0.00 3.72
178 179 0.396556 TGGAGGCCGAGCTATGTGTA 60.397 55.000 0.00 0.00 0.00 2.90
179 180 0.315568 GGAGGCCGAGCTATGTGTAG 59.684 60.000 0.00 0.00 0.00 2.74
180 181 0.315568 GAGGCCGAGCTATGTGTAGG 59.684 60.000 0.00 0.00 0.00 3.18
181 182 1.301009 GGCCGAGCTATGTGTAGGC 60.301 63.158 0.00 0.00 43.47 3.93
182 183 1.301009 GCCGAGCTATGTGTAGGCC 60.301 63.158 0.00 0.00 38.72 5.19
183 184 1.749334 GCCGAGCTATGTGTAGGCCT 61.749 60.000 11.78 11.78 38.72 5.19
184 185 0.315568 CCGAGCTATGTGTAGGCCTC 59.684 60.000 9.68 1.02 0.00 4.70
185 186 0.315568 CGAGCTATGTGTAGGCCTCC 59.684 60.000 9.68 0.00 0.00 4.30
186 187 1.414158 GAGCTATGTGTAGGCCTCCA 58.586 55.000 9.68 0.00 0.00 3.86
187 188 1.762957 GAGCTATGTGTAGGCCTCCAA 59.237 52.381 9.68 0.00 0.00 3.53
188 189 2.170607 GAGCTATGTGTAGGCCTCCAAA 59.829 50.000 9.68 0.00 0.00 3.28
189 190 2.780010 AGCTATGTGTAGGCCTCCAAAT 59.220 45.455 9.68 7.58 0.00 2.32
190 191 2.880890 GCTATGTGTAGGCCTCCAAATG 59.119 50.000 9.68 0.81 0.00 2.32
191 192 1.767759 ATGTGTAGGCCTCCAAATGC 58.232 50.000 9.68 0.00 0.00 3.56
192 193 0.403655 TGTGTAGGCCTCCAAATGCA 59.596 50.000 9.68 0.00 0.00 3.96
193 194 1.202989 TGTGTAGGCCTCCAAATGCAA 60.203 47.619 9.68 0.00 0.00 4.08
194 195 1.892474 GTGTAGGCCTCCAAATGCAAA 59.108 47.619 9.68 0.00 0.00 3.68
195 196 2.298729 GTGTAGGCCTCCAAATGCAAAA 59.701 45.455 9.68 0.00 0.00 2.44
196 197 3.055891 GTGTAGGCCTCCAAATGCAAAAT 60.056 43.478 9.68 0.00 0.00 1.82
197 198 4.159506 GTGTAGGCCTCCAAATGCAAAATA 59.840 41.667 9.68 0.00 0.00 1.40
198 199 4.961730 TGTAGGCCTCCAAATGCAAAATAT 59.038 37.500 9.68 0.00 0.00 1.28
199 200 6.040391 GTGTAGGCCTCCAAATGCAAAATATA 59.960 38.462 9.68 0.00 0.00 0.86
200 201 6.609212 TGTAGGCCTCCAAATGCAAAATATAA 59.391 34.615 9.68 0.00 0.00 0.98
201 202 6.558488 AGGCCTCCAAATGCAAAATATAAA 57.442 33.333 0.00 0.00 0.00 1.40
202 203 6.956497 AGGCCTCCAAATGCAAAATATAAAA 58.044 32.000 0.00 0.00 0.00 1.52
203 204 7.576403 AGGCCTCCAAATGCAAAATATAAAAT 58.424 30.769 0.00 0.00 0.00 1.82
204 205 8.054572 AGGCCTCCAAATGCAAAATATAAAATT 58.945 29.630 0.00 0.00 0.00 1.82
205 206 8.344831 GGCCTCCAAATGCAAAATATAAAATTC 58.655 33.333 0.00 0.00 0.00 2.17
206 207 8.063630 GCCTCCAAATGCAAAATATAAAATTCG 58.936 33.333 0.00 0.00 0.00 3.34
207 208 9.097257 CCTCCAAATGCAAAATATAAAATTCGT 57.903 29.630 0.00 0.00 0.00 3.85
208 209 9.904647 CTCCAAATGCAAAATATAAAATTCGTG 57.095 29.630 0.00 0.00 0.00 4.35
209 210 9.645059 TCCAAATGCAAAATATAAAATTCGTGA 57.355 25.926 0.00 0.00 0.00 4.35
270 271 5.901413 AAATCCAGAGATAGATGAAGGCA 57.099 39.130 0.00 0.00 30.42 4.75
271 272 6.451292 AAATCCAGAGATAGATGAAGGCAT 57.549 37.500 0.00 0.00 32.28 4.40
272 273 7.565190 AAATCCAGAGATAGATGAAGGCATA 57.435 36.000 0.00 0.00 30.62 3.14
273 274 7.565190 AATCCAGAGATAGATGAAGGCATAA 57.435 36.000 0.00 0.00 30.62 1.90
274 275 7.752518 ATCCAGAGATAGATGAAGGCATAAT 57.247 36.000 0.00 0.00 34.11 1.28
275 276 6.944096 TCCAGAGATAGATGAAGGCATAATG 58.056 40.000 0.00 0.00 34.11 1.90
276 277 5.585445 CCAGAGATAGATGAAGGCATAATGC 59.415 44.000 0.00 0.00 44.08 3.56
300 301 5.681105 CACAAGTGTGTAAATTTTCAGGACG 59.319 40.000 3.17 0.00 40.96 4.79
301 302 5.587043 ACAAGTGTGTAAATTTTCAGGACGA 59.413 36.000 0.00 0.00 35.72 4.20
302 303 6.094325 ACAAGTGTGTAAATTTTCAGGACGAA 59.906 34.615 0.00 0.00 35.72 3.85
303 304 6.687081 AGTGTGTAAATTTTCAGGACGAAA 57.313 33.333 0.00 0.00 41.95 3.46
304 305 7.272037 AGTGTGTAAATTTTCAGGACGAAAT 57.728 32.000 0.00 0.00 43.12 2.17
305 306 8.385898 AGTGTGTAAATTTTCAGGACGAAATA 57.614 30.769 0.00 0.00 43.12 1.40
306 307 8.287503 AGTGTGTAAATTTTCAGGACGAAATAC 58.712 33.333 0.00 0.00 43.12 1.89
307 308 7.267600 GTGTGTAAATTTTCAGGACGAAATACG 59.732 37.037 0.00 0.00 43.12 3.06
321 322 5.098218 CGAAATACGTTGGACAAAAAGGA 57.902 39.130 0.00 0.00 37.22 3.36
322 323 4.907582 CGAAATACGTTGGACAAAAAGGAC 59.092 41.667 0.00 0.00 37.22 3.85
323 324 5.504337 CGAAATACGTTGGACAAAAAGGACA 60.504 40.000 0.00 0.00 37.22 4.02
324 325 5.838531 AATACGTTGGACAAAAAGGACAA 57.161 34.783 0.00 0.00 0.00 3.18
325 326 5.838531 ATACGTTGGACAAAAAGGACAAA 57.161 34.783 0.00 0.00 0.00 2.83
326 327 4.729227 ACGTTGGACAAAAAGGACAAAT 57.271 36.364 0.00 0.00 0.00 2.32
327 328 4.678622 ACGTTGGACAAAAAGGACAAATC 58.321 39.130 0.00 0.00 0.00 2.17
328 329 4.401202 ACGTTGGACAAAAAGGACAAATCT 59.599 37.500 0.00 0.00 0.00 2.40
329 330 4.739716 CGTTGGACAAAAAGGACAAATCTG 59.260 41.667 0.00 0.00 0.00 2.90
330 331 5.449862 CGTTGGACAAAAAGGACAAATCTGA 60.450 40.000 0.00 0.00 0.00 3.27
331 332 6.515832 GTTGGACAAAAAGGACAAATCTGAT 58.484 36.000 0.00 0.00 0.00 2.90
332 333 7.521423 CGTTGGACAAAAAGGACAAATCTGATA 60.521 37.037 0.00 0.00 0.00 2.15
333 334 7.214467 TGGACAAAAAGGACAAATCTGATAC 57.786 36.000 0.00 0.00 0.00 2.24
334 335 7.004086 TGGACAAAAAGGACAAATCTGATACT 58.996 34.615 0.00 0.00 0.00 2.12
335 336 7.505585 TGGACAAAAAGGACAAATCTGATACTT 59.494 33.333 0.00 0.00 0.00 2.24
336 337 8.360390 GGACAAAAAGGACAAATCTGATACTTT 58.640 33.333 0.00 0.00 0.00 2.66
337 338 9.750125 GACAAAAAGGACAAATCTGATACTTTT 57.250 29.630 0.00 0.00 36.17 2.27
344 345 9.349713 AGGACAAATCTGATACTTTTTAACACA 57.650 29.630 0.00 0.00 0.00 3.72
362 363 9.778741 TTTAACACATGATACTATTGATCCTCC 57.221 33.333 0.00 0.00 0.00 4.30
363 364 7.623999 AACACATGATACTATTGATCCTCCT 57.376 36.000 0.00 0.00 0.00 3.69
364 365 8.727100 AACACATGATACTATTGATCCTCCTA 57.273 34.615 0.00 0.00 0.00 2.94
365 366 8.727100 ACACATGATACTATTGATCCTCCTAA 57.273 34.615 0.00 0.00 0.00 2.69
366 367 9.159254 ACACATGATACTATTGATCCTCCTAAA 57.841 33.333 0.00 0.00 0.00 1.85
367 368 9.429359 CACATGATACTATTGATCCTCCTAAAC 57.571 37.037 0.00 0.00 0.00 2.01
368 369 8.598041 ACATGATACTATTGATCCTCCTAAACC 58.402 37.037 0.00 0.00 0.00 3.27
369 370 7.554959 TGATACTATTGATCCTCCTAAACCC 57.445 40.000 0.00 0.00 0.00 4.11
370 371 7.313731 TGATACTATTGATCCTCCTAAACCCT 58.686 38.462 0.00 0.00 0.00 4.34
371 372 5.896073 ACTATTGATCCTCCTAAACCCTG 57.104 43.478 0.00 0.00 0.00 4.45
372 373 5.538877 ACTATTGATCCTCCTAAACCCTGA 58.461 41.667 0.00 0.00 0.00 3.86
373 374 5.970640 ACTATTGATCCTCCTAAACCCTGAA 59.029 40.000 0.00 0.00 0.00 3.02
374 375 6.621514 ACTATTGATCCTCCTAAACCCTGAAT 59.378 38.462 0.00 0.00 0.00 2.57
375 376 5.796502 TTGATCCTCCTAAACCCTGAATT 57.203 39.130 0.00 0.00 0.00 2.17
376 377 5.796502 TGATCCTCCTAAACCCTGAATTT 57.203 39.130 0.00 0.00 0.00 1.82
377 378 5.509498 TGATCCTCCTAAACCCTGAATTTG 58.491 41.667 0.00 0.00 0.00 2.32
378 379 5.015178 TGATCCTCCTAAACCCTGAATTTGT 59.985 40.000 0.00 0.00 0.00 2.83
379 380 4.918588 TCCTCCTAAACCCTGAATTTGTC 58.081 43.478 0.00 0.00 0.00 3.18
380 381 4.601857 TCCTCCTAAACCCTGAATTTGTCT 59.398 41.667 0.00 0.00 0.00 3.41
381 382 5.074515 TCCTCCTAAACCCTGAATTTGTCTT 59.925 40.000 0.00 0.00 0.00 3.01
382 383 5.775195 CCTCCTAAACCCTGAATTTGTCTTT 59.225 40.000 0.00 0.00 0.00 2.52
383 384 6.267699 CCTCCTAAACCCTGAATTTGTCTTTT 59.732 38.462 0.00 0.00 0.00 2.27
384 385 7.202001 CCTCCTAAACCCTGAATTTGTCTTTTT 60.202 37.037 0.00 0.00 0.00 1.94
405 406 4.804608 TTGTACAGGTCACATTTCAACG 57.195 40.909 0.00 0.00 0.00 4.10
406 407 3.799366 TGTACAGGTCACATTTCAACGT 58.201 40.909 0.00 0.00 0.00 3.99
407 408 4.946445 TGTACAGGTCACATTTCAACGTA 58.054 39.130 0.00 0.00 0.00 3.57
408 409 5.543714 TGTACAGGTCACATTTCAACGTAT 58.456 37.500 0.00 0.00 0.00 3.06
409 410 5.992829 TGTACAGGTCACATTTCAACGTATT 59.007 36.000 0.00 0.00 0.00 1.89
410 411 6.483974 TGTACAGGTCACATTTCAACGTATTT 59.516 34.615 0.00 0.00 0.00 1.40
411 412 5.997385 ACAGGTCACATTTCAACGTATTTC 58.003 37.500 0.00 0.00 0.00 2.17
412 413 5.529430 ACAGGTCACATTTCAACGTATTTCA 59.471 36.000 0.00 0.00 0.00 2.69
413 414 6.206634 ACAGGTCACATTTCAACGTATTTCAT 59.793 34.615 0.00 0.00 0.00 2.57
414 415 6.742718 CAGGTCACATTTCAACGTATTTCATC 59.257 38.462 0.00 0.00 0.00 2.92
415 416 6.027749 GGTCACATTTCAACGTATTTCATCC 58.972 40.000 0.00 0.00 0.00 3.51
416 417 6.128007 GGTCACATTTCAACGTATTTCATCCT 60.128 38.462 0.00 0.00 0.00 3.24
417 418 6.742718 GTCACATTTCAACGTATTTCATCCTG 59.257 38.462 0.00 0.00 0.00 3.86
418 419 6.652900 TCACATTTCAACGTATTTCATCCTGA 59.347 34.615 0.00 0.00 0.00 3.86
419 420 7.174080 TCACATTTCAACGTATTTCATCCTGAA 59.826 33.333 0.00 0.00 34.03 3.02
431 432 3.899734 TCATCCTGAAATTTTGCACACG 58.100 40.909 0.00 0.00 0.00 4.49
432 433 2.132740 TCCTGAAATTTTGCACACGC 57.867 45.000 0.00 0.00 39.24 5.34
433 434 7.681873 TTCATCCTGAAATTTTGCACACGCA 62.682 40.000 0.00 0.00 38.94 5.24
443 444 3.043713 CACACGCACGCCTCACAT 61.044 61.111 0.00 0.00 0.00 3.21
444 445 2.738521 ACACGCACGCCTCACATC 60.739 61.111 0.00 0.00 0.00 3.06
445 446 3.490759 CACGCACGCCTCACATCC 61.491 66.667 0.00 0.00 0.00 3.51
446 447 3.695606 ACGCACGCCTCACATCCT 61.696 61.111 0.00 0.00 0.00 3.24
447 448 2.434884 CGCACGCCTCACATCCTT 60.435 61.111 0.00 0.00 0.00 3.36
448 449 2.743752 CGCACGCCTCACATCCTTG 61.744 63.158 0.00 0.00 0.00 3.61
449 450 1.672356 GCACGCCTCACATCCTTGT 60.672 57.895 0.00 0.00 36.15 3.16
450 451 1.237285 GCACGCCTCACATCCTTGTT 61.237 55.000 0.00 0.00 32.34 2.83
451 452 1.238439 CACGCCTCACATCCTTGTTT 58.762 50.000 0.00 0.00 32.34 2.83
452 453 2.422597 CACGCCTCACATCCTTGTTTA 58.577 47.619 0.00 0.00 32.34 2.01
453 454 2.159627 CACGCCTCACATCCTTGTTTAC 59.840 50.000 0.00 0.00 32.34 2.01
454 455 2.038557 ACGCCTCACATCCTTGTTTACT 59.961 45.455 0.00 0.00 32.34 2.24
455 456 3.074412 CGCCTCACATCCTTGTTTACTT 58.926 45.455 0.00 0.00 32.34 2.24
456 457 3.120199 CGCCTCACATCCTTGTTTACTTG 60.120 47.826 0.00 0.00 32.34 3.16
457 458 3.366374 GCCTCACATCCTTGTTTACTTGC 60.366 47.826 0.00 0.00 32.34 4.01
458 459 3.820467 CCTCACATCCTTGTTTACTTGCA 59.180 43.478 0.00 0.00 32.34 4.08
459 460 4.320494 CCTCACATCCTTGTTTACTTGCAC 60.320 45.833 0.00 0.00 32.34 4.57
460 461 4.203226 TCACATCCTTGTTTACTTGCACA 58.797 39.130 0.00 0.00 32.34 4.57
461 462 4.275689 TCACATCCTTGTTTACTTGCACAG 59.724 41.667 0.00 0.00 32.34 3.66
462 463 4.275689 CACATCCTTGTTTACTTGCACAGA 59.724 41.667 0.00 0.00 32.34 3.41
463 464 4.275936 ACATCCTTGTTTACTTGCACAGAC 59.724 41.667 0.00 0.00 29.55 3.51
464 465 4.150897 TCCTTGTTTACTTGCACAGACT 57.849 40.909 0.00 0.00 0.00 3.24
465 466 4.523083 TCCTTGTTTACTTGCACAGACTT 58.477 39.130 0.00 0.00 0.00 3.01
466 467 4.947388 TCCTTGTTTACTTGCACAGACTTT 59.053 37.500 0.00 0.00 0.00 2.66
467 468 5.417580 TCCTTGTTTACTTGCACAGACTTTT 59.582 36.000 0.00 0.00 0.00 2.27
468 469 6.071616 TCCTTGTTTACTTGCACAGACTTTTT 60.072 34.615 0.00 0.00 0.00 1.94
469 470 6.253512 CCTTGTTTACTTGCACAGACTTTTTC 59.746 38.462 0.00 0.00 0.00 2.29
470 471 6.260870 TGTTTACTTGCACAGACTTTTTCA 57.739 33.333 0.00 0.00 0.00 2.69
471 472 6.321717 TGTTTACTTGCACAGACTTTTTCAG 58.678 36.000 0.00 0.00 0.00 3.02
472 473 6.150307 TGTTTACTTGCACAGACTTTTTCAGA 59.850 34.615 0.00 0.00 0.00 3.27
473 474 6.942532 TTACTTGCACAGACTTTTTCAGAT 57.057 33.333 0.00 0.00 0.00 2.90
474 475 5.841957 ACTTGCACAGACTTTTTCAGATT 57.158 34.783 0.00 0.00 0.00 2.40
475 476 6.212888 ACTTGCACAGACTTTTTCAGATTT 57.787 33.333 0.00 0.00 0.00 2.17
476 477 6.633856 ACTTGCACAGACTTTTTCAGATTTT 58.366 32.000 0.00 0.00 0.00 1.82
477 478 7.099120 ACTTGCACAGACTTTTTCAGATTTTT 58.901 30.769 0.00 0.00 0.00 1.94
529 530 1.616159 AAAACCGGTCTTCATGGTGG 58.384 50.000 8.04 0.00 35.79 4.61
530 531 0.893727 AAACCGGTCTTCATGGTGGC 60.894 55.000 8.04 0.00 35.79 5.01
531 532 2.063015 AACCGGTCTTCATGGTGGCA 62.063 55.000 8.04 0.00 35.79 4.92
532 533 1.746615 CCGGTCTTCATGGTGGCAG 60.747 63.158 0.00 0.00 0.00 4.85
533 534 1.296392 CGGTCTTCATGGTGGCAGA 59.704 57.895 0.00 0.00 0.00 4.26
534 535 0.742281 CGGTCTTCATGGTGGCAGAG 60.742 60.000 0.00 0.00 0.00 3.35
535 536 0.615331 GGTCTTCATGGTGGCAGAGA 59.385 55.000 0.00 0.00 0.00 3.10
536 537 1.406614 GGTCTTCATGGTGGCAGAGAG 60.407 57.143 0.00 0.00 0.00 3.20
537 538 0.251354 TCTTCATGGTGGCAGAGAGC 59.749 55.000 0.00 0.00 44.65 4.09
547 548 2.616969 GCAGAGAGCCAAAACGACA 58.383 52.632 0.00 0.00 37.23 4.35
548 549 1.160137 GCAGAGAGCCAAAACGACAT 58.840 50.000 0.00 0.00 37.23 3.06
549 550 1.537202 GCAGAGAGCCAAAACGACATT 59.463 47.619 0.00 0.00 37.23 2.71
550 551 2.742053 GCAGAGAGCCAAAACGACATTA 59.258 45.455 0.00 0.00 37.23 1.90
551 552 3.375299 GCAGAGAGCCAAAACGACATTAT 59.625 43.478 0.00 0.00 37.23 1.28
552 553 4.494855 GCAGAGAGCCAAAACGACATTATC 60.495 45.833 0.00 0.00 37.23 1.75
553 554 4.631377 CAGAGAGCCAAAACGACATTATCA 59.369 41.667 0.00 0.00 0.00 2.15
554 555 5.295292 CAGAGAGCCAAAACGACATTATCAT 59.705 40.000 0.00 0.00 0.00 2.45
555 556 5.525378 AGAGAGCCAAAACGACATTATCATC 59.475 40.000 0.00 0.00 0.00 2.92
556 557 5.431765 AGAGCCAAAACGACATTATCATCT 58.568 37.500 0.00 0.00 0.00 2.90
557 558 6.582636 AGAGCCAAAACGACATTATCATCTA 58.417 36.000 0.00 0.00 0.00 1.98
558 559 7.047891 AGAGCCAAAACGACATTATCATCTAA 58.952 34.615 0.00 0.00 0.00 2.10
559 560 7.552687 AGAGCCAAAACGACATTATCATCTAAA 59.447 33.333 0.00 0.00 0.00 1.85
560 561 7.472543 AGCCAAAACGACATTATCATCTAAAC 58.527 34.615 0.00 0.00 0.00 2.01
561 562 6.410914 GCCAAAACGACATTATCATCTAAACG 59.589 38.462 0.00 0.00 0.00 3.60
562 563 6.410914 CCAAAACGACATTATCATCTAAACGC 59.589 38.462 0.00 0.00 0.00 4.84
563 564 6.903883 AAACGACATTATCATCTAAACGCT 57.096 33.333 0.00 0.00 0.00 5.07
564 565 6.903883 AACGACATTATCATCTAAACGCTT 57.096 33.333 0.00 0.00 0.00 4.68
565 566 6.903883 ACGACATTATCATCTAAACGCTTT 57.096 33.333 0.00 0.00 0.00 3.51
566 567 7.303634 ACGACATTATCATCTAAACGCTTTT 57.696 32.000 0.00 0.00 0.00 2.27
567 568 8.415192 ACGACATTATCATCTAAACGCTTTTA 57.585 30.769 0.00 0.00 0.00 1.52
568 569 9.042008 ACGACATTATCATCTAAACGCTTTTAT 57.958 29.630 0.00 0.00 0.00 1.40
605 606 4.043073 GGAGTACTAATACTGTTGCGAGC 58.957 47.826 0.00 0.00 41.98 5.03
636 637 3.957288 TGCTAGGGCAAAAGAGGAC 57.043 52.632 0.00 0.00 46.36 3.85
643 644 1.154197 GGCAAAAGAGGACCACGTAC 58.846 55.000 0.00 0.00 0.00 3.67
703 704 2.666190 GTGCAGTGCCGAAGCTGA 60.666 61.111 13.72 0.00 40.80 4.26
710 711 2.956964 GCCGAAGCTGACCGATCG 60.957 66.667 8.51 8.51 35.50 3.69
806 807 3.037485 CGAACCCTCGCTCTTCTTC 57.963 57.895 0.00 0.00 38.45 2.87
849 850 2.279069 CGCTCCACTCCACTCCAGT 61.279 63.158 0.00 0.00 0.00 4.00
935 946 0.393537 AATCCGCTCCTTTCCTGCTG 60.394 55.000 0.00 0.00 0.00 4.41
969 981 3.264897 GCCGCGCACAATCTCGAT 61.265 61.111 8.75 0.00 0.00 3.59
1119 1131 2.619074 CCCTTTTCTTCTTCCCGCATCT 60.619 50.000 0.00 0.00 0.00 2.90
1138 1150 2.852449 TCTAAATGGGCTGGACTGGATT 59.148 45.455 0.00 0.00 0.00 3.01
1139 1151 2.149973 AAATGGGCTGGACTGGATTC 57.850 50.000 0.00 0.00 0.00 2.52
1140 1152 1.002069 AATGGGCTGGACTGGATTCA 58.998 50.000 0.00 0.00 0.00 2.57
1141 1153 0.549950 ATGGGCTGGACTGGATTCAG 59.450 55.000 0.00 0.00 46.10 3.02
1216 1238 7.068839 TCACATCTAGAGTAAATCCCTTCAGTC 59.931 40.741 0.00 0.00 0.00 3.51
1220 1242 5.669164 AGAGTAAATCCCTTCAGTCAGTC 57.331 43.478 0.00 0.00 0.00 3.51
1257 1279 4.177026 CTCACTCATACTACCTTGTGTGC 58.823 47.826 0.00 0.00 37.30 4.57
1262 1284 2.018355 TACTACCTTGTGTGCAGGGA 57.982 50.000 2.75 0.00 43.81 4.20
1340 1362 0.320247 ACGAGCAGAGAGGCTTTGTG 60.320 55.000 0.00 0.00 45.99 3.33
1475 1497 2.953821 GACGTGTCGGTTCCGGTA 59.046 61.111 11.37 0.00 0.00 4.02
1673 1695 4.309933 TCATGATGGTGATACTTGCGATC 58.690 43.478 0.00 0.00 0.00 3.69
1866 3579 3.262420 GTGCACATCCTGAACGTAAGAT 58.738 45.455 13.17 0.00 43.62 2.40
1875 3588 4.049186 CCTGAACGTAAGATACATTCCGG 58.951 47.826 0.00 0.00 43.62 5.14
2126 3856 9.282247 CATGTACTAAATTCTGCAATCAAACTC 57.718 33.333 0.00 0.00 0.00 3.01
2186 4029 6.339730 CCTTGTTCAAAATAATGGCATGCTA 58.660 36.000 18.92 12.99 0.00 3.49
2492 4742 7.278646 TGTGCTGATTCTGATACAAATACTGAC 59.721 37.037 0.00 0.00 0.00 3.51
2591 4841 3.497763 CCAGAACAACCCCTGATGTAACA 60.498 47.826 0.00 0.00 32.37 2.41
2601 4851 1.131126 CTGATGTAACAAGCTTGGCCG 59.869 52.381 29.18 5.66 0.00 6.13
2618 4868 1.808411 CCGGTGTTGAACATGTAGCT 58.192 50.000 0.00 0.00 0.00 3.32
2648 4898 0.593518 CAGCTCGATCTGCAGGTACG 60.594 60.000 15.13 16.38 0.00 3.67
2706 4962 8.263854 AGCCAGGTTATAACAGATATTACACT 57.736 34.615 17.16 0.00 0.00 3.55
2739 4995 3.941573 CCATTAATTGGCAAGGCTTGTT 58.058 40.909 26.71 15.95 39.09 2.83
2743 4999 1.535204 ATTGGCAAGGCTTGTTCCGG 61.535 55.000 26.71 0.00 0.00 5.14
2858 5153 8.764287 AGCTGTTTTCTTTAACATTATGTTTGC 58.236 29.630 16.08 5.82 41.45 3.68
2950 5245 1.051812 ACTCACAGAGTTGAGGGGTG 58.948 55.000 5.19 0.00 46.38 4.61
2974 5269 2.074547 TTCTTGGAAGAACGCGTAGG 57.925 50.000 14.46 0.00 39.95 3.18
3025 5323 1.672356 CTGGGCCTTCTTCACCGTG 60.672 63.158 4.53 0.00 0.00 4.94
3113 5425 0.964860 TCCAATTCCACACGGCATGG 60.965 55.000 0.00 0.00 38.71 3.66
3155 5467 9.699410 ATTCAAATAATGTGTTTCCCTCTGATA 57.301 29.630 0.00 0.00 0.00 2.15
3158 5470 3.933861 ATGTGTTTCCCTCTGATACCC 57.066 47.619 0.00 0.00 0.00 3.69
3459 5783 6.135290 TGGCAGTATCTGATACAATTTTGC 57.865 37.500 25.16 23.09 38.21 3.68
3741 6065 2.045536 GCTCCTTGGCCACCTCAG 60.046 66.667 3.88 0.00 0.00 3.35
3928 6276 3.695606 GGAGCGTCACTGGAGCCA 61.696 66.667 0.00 0.00 0.00 4.75
4002 6350 0.242017 GGCAGCATTCTGTTGGACAC 59.758 55.000 0.00 0.00 42.29 3.67
4027 6375 2.986311 GGTGACGAACAGCAACAGA 58.014 52.632 10.41 0.00 45.12 3.41
4185 6551 7.355332 AGTGTTTTGCATAATTTCTTCATGC 57.645 32.000 3.62 3.62 44.23 4.06
4186 6552 7.156673 AGTGTTTTGCATAATTTCTTCATGCT 58.843 30.769 10.60 0.00 44.27 3.79
4188 6554 6.369340 TGTTTTGCATAATTTCTTCATGCTGG 59.631 34.615 10.60 0.00 44.27 4.85
4189 6555 5.664294 TTGCATAATTTCTTCATGCTGGT 57.336 34.783 10.60 0.00 44.27 4.00
4190 6556 5.001237 TGCATAATTTCTTCATGCTGGTG 57.999 39.130 10.60 0.00 44.27 4.17
4191 6557 4.463539 TGCATAATTTCTTCATGCTGGTGT 59.536 37.500 10.60 0.00 44.27 4.16
4209 6585 3.184581 GGTGTAATGTAATCGCTGCTAGC 59.815 47.826 8.10 8.10 38.02 3.42
4213 6589 0.461548 TGTAATCGCTGCTAGCTGCT 59.538 50.000 34.44 23.01 39.60 4.24
4236 6612 3.072184 ACTCCTGATGGAAGATATGCACC 59.928 47.826 0.00 0.00 42.66 5.01
4301 6679 2.671070 ACCATCGGTGCAAGGGAG 59.329 61.111 0.00 0.00 32.98 4.30
4361 6739 2.549926 CCAACAAGCTTCCACCAAAAC 58.450 47.619 0.00 0.00 0.00 2.43
4432 6828 1.565305 GAACATTGTGTTTTGGCGCA 58.435 45.000 10.83 0.00 41.28 6.09
4437 6833 0.102120 TTGTGTTTTGGCGCAAGAGG 59.898 50.000 10.83 0.00 43.02 3.69
4503 6899 2.938838 TGACACCCCACCAAAAACTAG 58.061 47.619 0.00 0.00 0.00 2.57
4507 6903 2.078611 ACCCCACCAAAAACTAGGGAT 58.921 47.619 0.00 0.00 42.25 3.85
4531 6927 4.507756 GCATTTCGAAACTTTTCTGCCTTT 59.492 37.500 13.81 0.00 35.07 3.11
4543 6939 6.208797 ACTTTTCTGCCTTTATGGTTTACTCC 59.791 38.462 0.00 0.00 38.35 3.85
4545 6941 3.516300 TCTGCCTTTATGGTTTACTCCGA 59.484 43.478 0.00 0.00 38.35 4.55
4547 6943 4.653868 TGCCTTTATGGTTTACTCCGAAA 58.346 39.130 0.00 0.00 38.35 3.46
4549 6945 4.436451 GCCTTTATGGTTTACTCCGAAACG 60.436 45.833 0.00 0.00 39.72 3.60
4550 6946 4.931002 CCTTTATGGTTTACTCCGAAACGA 59.069 41.667 0.00 0.00 39.72 3.85
4551 6947 5.583457 CCTTTATGGTTTACTCCGAAACGAT 59.417 40.000 0.00 2.79 39.72 3.73
4552 6948 6.093082 CCTTTATGGTTTACTCCGAAACGATT 59.907 38.462 0.00 0.00 39.72 3.34
4553 6949 6.651755 TTATGGTTTACTCCGAAACGATTC 57.348 37.500 0.00 0.00 39.72 2.52
4554 6950 4.261578 TGGTTTACTCCGAAACGATTCT 57.738 40.909 3.81 0.00 39.72 2.40
4555 6951 5.389859 TGGTTTACTCCGAAACGATTCTA 57.610 39.130 3.81 0.00 39.72 2.10
4559 6955 7.063780 TGGTTTACTCCGAAACGATTCTAATTC 59.936 37.037 3.81 0.00 39.72 2.17
4573 6969 9.014297 ACGATTCTAATTCTTGGTTTCTTCAAT 57.986 29.630 0.00 0.00 0.00 2.57
4603 6999 9.573133 TTTTCTGTTTTCTCTCTGAAACATTTC 57.427 29.630 2.58 0.00 43.55 2.17
4605 7001 6.828273 TCTGTTTTCTCTCTGAAACATTTCCA 59.172 34.615 2.00 0.00 43.55 3.53
4618 7014 6.039270 TGAAACATTTCCAGTGTCTTCGAAAT 59.961 34.615 0.00 0.13 35.78 2.17
4628 7024 5.395486 CAGTGTCTTCGAAATTTTTCCGTTC 59.605 40.000 0.00 0.00 33.68 3.95
4638 7034 6.357240 CGAAATTTTTCCGTTCACTTTCTCTC 59.643 38.462 0.00 0.00 33.68 3.20
4653 7059 7.453126 TCACTTTCTCTCAGACTCCTTTTCTAT 59.547 37.037 0.00 0.00 0.00 1.98
4678 7089 6.477053 ACTCAGCAGATATATGACACTTGT 57.523 37.500 0.39 0.00 0.00 3.16
4680 7091 5.052481 TCAGCAGATATATGACACTTGTGC 58.948 41.667 0.39 0.00 0.00 4.57
4739 7174 2.555757 AGGAAGTGAGATGCAAAACAGC 59.444 45.455 0.00 0.00 33.80 4.40
4812 7247 4.340950 ACAAGAAACCCACGAAATCAACAT 59.659 37.500 0.00 0.00 0.00 2.71
4830 7265 1.133388 CATATGTGGGTCCCCTGCATT 60.133 52.381 5.13 0.00 35.40 3.56
4886 7760 3.493350 GGCCTCGATGTGTACAGATCAAT 60.493 47.826 27.02 0.00 31.23 2.57
4906 7780 9.559958 GATCAATAATTTTTATAGCCGATGTGG 57.440 33.333 0.00 0.00 42.50 4.17
4907 7781 7.881142 TCAATAATTTTTATAGCCGATGTGGG 58.119 34.615 0.00 0.00 38.63 4.61
4914 7788 2.822399 GCCGATGTGGGTCCTAGG 59.178 66.667 0.82 0.82 38.63 3.02
4983 7858 2.549064 AAATTTGGCTGCCCAGAAAC 57.451 45.000 17.53 0.00 43.37 2.78
5009 7884 2.073816 CTGCGGATCGGTAACAAAAGT 58.926 47.619 1.93 0.00 0.00 2.66
5010 7885 3.255725 CTGCGGATCGGTAACAAAAGTA 58.744 45.455 1.93 0.00 0.00 2.24
5017 7892 6.757947 CGGATCGGTAACAAAAGTATCCTTTA 59.242 38.462 0.00 0.00 40.01 1.85
5022 7897 9.374838 TCGGTAACAAAAGTATCCTTTATTCTC 57.625 33.333 0.00 0.00 40.01 2.87
5029 7904 8.512138 CAAAAGTATCCTTTATTCTCAACGGTT 58.488 33.333 0.00 0.00 40.01 4.44
5046 7921 2.587522 GGTTGAAAAGGGAGCAGTTCT 58.412 47.619 0.00 0.00 0.00 3.01
5116 7992 1.220749 GGCCCTAAGCGTGTGATCA 59.779 57.895 0.00 0.00 45.17 2.92
5137 8013 9.031537 TGATCATGTAGGTACGGTGAAATATAT 57.968 33.333 0.00 0.00 30.77 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.105224 TGGACGTGTTCACGGACAAT 59.895 50.000 25.14 7.56 37.45 2.71
1 2 0.528901 CTGGACGTGTTCACGGACAA 60.529 55.000 25.14 13.52 37.45 3.18
3 4 0.938168 GTCTGGACGTGTTCACGGAC 60.938 60.000 25.14 18.68 37.45 4.79
4 5 1.361271 GTCTGGACGTGTTCACGGA 59.639 57.895 25.14 12.50 37.45 4.69
5 6 1.066752 TGTCTGGACGTGTTCACGG 59.933 57.895 25.14 10.63 37.45 4.94
6 7 1.537289 CGTGTCTGGACGTGTTCACG 61.537 60.000 21.13 21.13 41.40 4.35
7 8 2.213483 CGTGTCTGGACGTGTTCAC 58.787 57.895 0.00 0.00 34.56 3.18
8 9 4.722008 CGTGTCTGGACGTGTTCA 57.278 55.556 0.00 0.00 34.56 3.18
14 15 2.428569 CACGGACGTGTCTGGACG 60.429 66.667 16.06 4.59 45.09 4.79
15 16 1.874345 ATCCACGGACGTGTCTGGAC 61.874 60.000 21.52 0.00 44.02 4.02
16 17 1.605451 ATCCACGGACGTGTCTGGA 60.605 57.895 21.52 13.07 44.02 3.86
17 18 1.446099 CATCCACGGACGTGTCTGG 60.446 63.158 21.52 8.23 44.02 3.86
18 19 0.319555 AACATCCACGGACGTGTCTG 60.320 55.000 21.52 18.94 44.02 3.51
19 20 0.391597 AAACATCCACGGACGTGTCT 59.608 50.000 21.52 7.25 44.02 3.41
20 21 1.223187 AAAACATCCACGGACGTGTC 58.777 50.000 21.52 0.00 44.02 3.67
21 22 2.529780 TAAAACATCCACGGACGTGT 57.470 45.000 21.52 3.28 44.02 4.49
22 23 3.061322 TCTTAAAACATCCACGGACGTG 58.939 45.455 17.21 17.21 45.02 4.49
23 24 3.323243 CTCTTAAAACATCCACGGACGT 58.677 45.455 0.00 0.00 0.00 4.34
24 25 2.671396 CCTCTTAAAACATCCACGGACG 59.329 50.000 0.00 0.00 0.00 4.79
25 26 2.418976 GCCTCTTAAAACATCCACGGAC 59.581 50.000 0.00 0.00 0.00 4.79
26 27 2.304761 AGCCTCTTAAAACATCCACGGA 59.695 45.455 0.00 0.00 0.00 4.69
27 28 2.711542 AGCCTCTTAAAACATCCACGG 58.288 47.619 0.00 0.00 0.00 4.94
28 29 3.751175 TCAAGCCTCTTAAAACATCCACG 59.249 43.478 0.00 0.00 0.00 4.94
29 30 5.904362 ATCAAGCCTCTTAAAACATCCAC 57.096 39.130 0.00 0.00 0.00 4.02
30 31 8.593945 ATTAATCAAGCCTCTTAAAACATCCA 57.406 30.769 0.00 0.00 0.00 3.41
77 78 7.880195 GCAAGTATGATGATGGACTATAAACCT 59.120 37.037 0.00 0.00 0.00 3.50
78 79 7.148573 CGCAAGTATGATGATGGACTATAAACC 60.149 40.741 0.00 0.00 0.00 3.27
79 80 7.622256 GCGCAAGTATGATGATGGACTATAAAC 60.622 40.741 0.30 0.00 41.68 2.01
80 81 6.368791 GCGCAAGTATGATGATGGACTATAAA 59.631 38.462 0.30 0.00 41.68 1.40
81 82 5.869344 GCGCAAGTATGATGATGGACTATAA 59.131 40.000 0.30 0.00 41.68 0.98
82 83 5.410924 GCGCAAGTATGATGATGGACTATA 58.589 41.667 0.30 0.00 41.68 1.31
83 84 4.248859 GCGCAAGTATGATGATGGACTAT 58.751 43.478 0.30 0.00 41.68 2.12
84 85 3.653344 GCGCAAGTATGATGATGGACTA 58.347 45.455 0.30 0.00 41.68 2.59
85 86 2.487934 GCGCAAGTATGATGATGGACT 58.512 47.619 0.30 0.00 41.68 3.85
86 87 1.193203 CGCGCAAGTATGATGATGGAC 59.807 52.381 8.75 0.00 41.68 4.02
87 88 1.501169 CGCGCAAGTATGATGATGGA 58.499 50.000 8.75 0.00 41.68 3.41
88 89 0.110509 GCGCGCAAGTATGATGATGG 60.111 55.000 29.10 0.00 41.68 3.51
89 90 0.582960 TGCGCGCAAGTATGATGATG 59.417 50.000 34.66 0.00 41.68 3.07
90 91 1.003545 GTTGCGCGCAAGTATGATGAT 60.004 47.619 43.69 0.00 36.52 2.45
91 92 0.373370 GTTGCGCGCAAGTATGATGA 59.627 50.000 43.69 19.79 36.52 2.92
92 93 0.589729 GGTTGCGCGCAAGTATGATG 60.590 55.000 43.69 0.00 36.52 3.07
93 94 1.714899 GGGTTGCGCGCAAGTATGAT 61.715 55.000 43.69 0.00 36.52 2.45
94 95 2.395360 GGGTTGCGCGCAAGTATGA 61.395 57.895 43.69 22.26 36.52 2.15
95 96 2.100216 GGGTTGCGCGCAAGTATG 59.900 61.111 43.69 0.00 36.52 2.39
96 97 1.969064 TTGGGTTGCGCGCAAGTAT 60.969 52.632 43.69 0.00 43.70 2.12
97 98 2.592001 TTGGGTTGCGCGCAAGTA 60.592 55.556 43.69 29.33 43.70 2.24
100 101 0.032130 TTAATTTGGGTTGCGCGCAA 59.968 45.000 40.23 40.23 46.29 4.85
101 102 0.244994 ATTAATTTGGGTTGCGCGCA 59.755 45.000 33.09 33.09 38.32 6.09
102 103 0.644843 CATTAATTTGGGTTGCGCGC 59.355 50.000 27.26 27.26 0.00 6.86
103 104 1.653114 CACATTAATTTGGGTTGCGCG 59.347 47.619 0.00 0.00 0.00 6.86
104 105 1.393196 GCACATTAATTTGGGTTGCGC 59.607 47.619 0.00 0.00 0.00 6.09
105 106 2.923020 GAGCACATTAATTTGGGTTGCG 59.077 45.455 3.87 0.00 0.00 4.85
106 107 3.261580 GGAGCACATTAATTTGGGTTGC 58.738 45.455 3.87 0.00 0.00 4.17
107 108 4.021192 ACTGGAGCACATTAATTTGGGTTG 60.021 41.667 3.87 0.00 0.00 3.77
108 109 4.159557 ACTGGAGCACATTAATTTGGGTT 58.840 39.130 3.87 0.00 0.00 4.11
109 110 3.778265 ACTGGAGCACATTAATTTGGGT 58.222 40.909 3.87 0.00 0.00 4.51
110 111 5.010012 GGATACTGGAGCACATTAATTTGGG 59.990 44.000 3.87 0.00 0.00 4.12
111 112 5.593909 TGGATACTGGAGCACATTAATTTGG 59.406 40.000 3.87 0.00 37.61 3.28
112 113 6.095300 TGTGGATACTGGAGCACATTAATTTG 59.905 38.462 0.00 0.00 37.61 2.32
113 114 6.186957 TGTGGATACTGGAGCACATTAATTT 58.813 36.000 0.00 0.00 37.61 1.82
114 115 5.754782 TGTGGATACTGGAGCACATTAATT 58.245 37.500 0.00 0.00 37.61 1.40
115 116 5.104360 ACTGTGGATACTGGAGCACATTAAT 60.104 40.000 0.00 0.00 37.61 1.40
116 117 4.225042 ACTGTGGATACTGGAGCACATTAA 59.775 41.667 0.00 0.00 37.61 1.40
117 118 3.774766 ACTGTGGATACTGGAGCACATTA 59.225 43.478 0.00 0.00 37.61 1.90
118 119 2.573462 ACTGTGGATACTGGAGCACATT 59.427 45.455 0.00 0.00 37.61 2.71
119 120 2.191400 ACTGTGGATACTGGAGCACAT 58.809 47.619 0.00 0.00 37.61 3.21
120 121 1.644509 ACTGTGGATACTGGAGCACA 58.355 50.000 0.00 0.00 37.61 4.57
121 122 2.770164 AACTGTGGATACTGGAGCAC 57.230 50.000 0.00 0.00 37.61 4.40
122 123 4.575885 GTTTAACTGTGGATACTGGAGCA 58.424 43.478 0.00 0.00 37.61 4.26
123 124 3.617263 CGTTTAACTGTGGATACTGGAGC 59.383 47.826 0.00 0.00 37.61 4.70
124 125 3.617263 GCGTTTAACTGTGGATACTGGAG 59.383 47.826 0.00 0.00 37.61 3.86
125 126 3.592059 GCGTTTAACTGTGGATACTGGA 58.408 45.455 0.00 0.00 37.61 3.86
126 127 2.347452 CGCGTTTAACTGTGGATACTGG 59.653 50.000 0.00 0.00 37.61 4.00
127 128 2.347452 CCGCGTTTAACTGTGGATACTG 59.653 50.000 4.92 0.00 38.00 2.74
128 129 2.231964 TCCGCGTTTAACTGTGGATACT 59.768 45.455 4.92 0.00 39.73 2.12
129 130 2.609350 TCCGCGTTTAACTGTGGATAC 58.391 47.619 4.92 0.00 39.73 2.24
130 131 3.316071 TTCCGCGTTTAACTGTGGATA 57.684 42.857 17.57 9.73 43.78 2.59
131 132 2.172851 TTCCGCGTTTAACTGTGGAT 57.827 45.000 17.57 0.00 43.78 3.41
132 133 1.950828 TTTCCGCGTTTAACTGTGGA 58.049 45.000 4.92 14.58 42.73 4.02
133 134 2.977169 CAATTTCCGCGTTTAACTGTGG 59.023 45.455 4.92 11.30 37.09 4.17
134 135 2.403698 GCAATTTCCGCGTTTAACTGTG 59.596 45.455 4.92 0.00 0.00 3.66
135 136 2.292292 AGCAATTTCCGCGTTTAACTGT 59.708 40.909 4.92 0.00 0.00 3.55
136 137 2.928694 AGCAATTTCCGCGTTTAACTG 58.071 42.857 4.92 0.00 0.00 3.16
137 138 3.636282 AAGCAATTTCCGCGTTTAACT 57.364 38.095 4.92 0.00 0.00 2.24
138 139 4.441825 CAAAAGCAATTTCCGCGTTTAAC 58.558 39.130 4.92 0.00 38.69 2.01
139 140 3.491267 CCAAAAGCAATTTCCGCGTTTAA 59.509 39.130 4.92 0.00 38.69 1.52
140 141 3.053455 CCAAAAGCAATTTCCGCGTTTA 58.947 40.909 4.92 0.00 38.69 2.01
141 142 1.864082 CCAAAAGCAATTTCCGCGTTT 59.136 42.857 4.92 0.00 40.86 3.60
142 143 1.067821 TCCAAAAGCAATTTCCGCGTT 59.932 42.857 4.92 0.00 32.26 4.84
143 144 0.671251 TCCAAAAGCAATTTCCGCGT 59.329 45.000 4.92 0.00 0.00 6.01
144 145 1.339711 CTCCAAAAGCAATTTCCGCG 58.660 50.000 0.00 0.00 0.00 6.46
145 146 1.713597 CCTCCAAAAGCAATTTCCGC 58.286 50.000 0.00 0.00 0.00 5.54
146 147 1.672737 GGCCTCCAAAAGCAATTTCCG 60.673 52.381 0.00 0.00 0.00 4.30
147 148 1.672737 CGGCCTCCAAAAGCAATTTCC 60.673 52.381 0.00 0.00 0.00 3.13
148 149 1.272212 TCGGCCTCCAAAAGCAATTTC 59.728 47.619 0.00 0.00 0.00 2.17
149 150 1.273327 CTCGGCCTCCAAAAGCAATTT 59.727 47.619 0.00 0.00 0.00 1.82
150 151 0.890683 CTCGGCCTCCAAAAGCAATT 59.109 50.000 0.00 0.00 0.00 2.32
151 152 1.598701 GCTCGGCCTCCAAAAGCAAT 61.599 55.000 0.00 0.00 33.21 3.56
152 153 2.268076 GCTCGGCCTCCAAAAGCAA 61.268 57.895 0.00 0.00 33.21 3.91
153 154 1.836999 TAGCTCGGCCTCCAAAAGCA 61.837 55.000 0.00 0.00 35.42 3.91
154 155 0.464554 ATAGCTCGGCCTCCAAAAGC 60.465 55.000 0.00 0.00 0.00 3.51
155 156 1.303309 CATAGCTCGGCCTCCAAAAG 58.697 55.000 0.00 0.00 0.00 2.27
156 157 0.618458 ACATAGCTCGGCCTCCAAAA 59.382 50.000 0.00 0.00 0.00 2.44
157 158 0.107703 CACATAGCTCGGCCTCCAAA 60.108 55.000 0.00 0.00 0.00 3.28
158 159 1.264749 ACACATAGCTCGGCCTCCAA 61.265 55.000 0.00 0.00 0.00 3.53
159 160 0.396556 TACACATAGCTCGGCCTCCA 60.397 55.000 0.00 0.00 0.00 3.86
160 161 0.315568 CTACACATAGCTCGGCCTCC 59.684 60.000 0.00 0.00 0.00 4.30
161 162 0.315568 CCTACACATAGCTCGGCCTC 59.684 60.000 0.00 0.00 0.00 4.70
162 163 1.749334 GCCTACACATAGCTCGGCCT 61.749 60.000 0.00 0.00 0.00 5.19
163 164 1.301009 GCCTACACATAGCTCGGCC 60.301 63.158 0.00 0.00 0.00 6.13
164 165 1.301009 GGCCTACACATAGCTCGGC 60.301 63.158 0.00 0.00 36.83 5.54
165 166 0.315568 GAGGCCTACACATAGCTCGG 59.684 60.000 4.42 0.00 0.00 4.63
166 167 0.315568 GGAGGCCTACACATAGCTCG 59.684 60.000 11.24 0.00 0.00 5.03
167 168 1.414158 TGGAGGCCTACACATAGCTC 58.586 55.000 15.85 0.00 0.00 4.09
168 169 1.879575 TTGGAGGCCTACACATAGCT 58.120 50.000 20.36 0.00 0.00 3.32
169 170 2.710096 TTTGGAGGCCTACACATAGC 57.290 50.000 20.36 0.00 0.00 2.97
170 171 2.880890 GCATTTGGAGGCCTACACATAG 59.119 50.000 20.36 12.63 0.00 2.23
171 172 2.240921 TGCATTTGGAGGCCTACACATA 59.759 45.455 20.36 6.63 0.00 2.29
172 173 1.005805 TGCATTTGGAGGCCTACACAT 59.994 47.619 20.36 15.30 0.00 3.21
173 174 0.403655 TGCATTTGGAGGCCTACACA 59.596 50.000 20.36 13.07 0.00 3.72
174 175 1.544724 TTGCATTTGGAGGCCTACAC 58.455 50.000 20.36 6.79 0.00 2.90
175 176 2.300956 TTTGCATTTGGAGGCCTACA 57.699 45.000 15.85 15.85 0.00 2.74
176 177 3.893326 ATTTTGCATTTGGAGGCCTAC 57.107 42.857 8.55 8.55 0.00 3.18
177 178 7.667575 TTTATATTTTGCATTTGGAGGCCTA 57.332 32.000 4.42 0.00 0.00 3.93
178 179 6.558488 TTTATATTTTGCATTTGGAGGCCT 57.442 33.333 3.86 3.86 0.00 5.19
179 180 7.806409 ATTTTATATTTTGCATTTGGAGGCC 57.194 32.000 0.00 0.00 0.00 5.19
180 181 8.063630 CGAATTTTATATTTTGCATTTGGAGGC 58.936 33.333 0.00 0.00 0.00 4.70
181 182 9.097257 ACGAATTTTATATTTTGCATTTGGAGG 57.903 29.630 0.00 0.00 0.00 4.30
182 183 9.904647 CACGAATTTTATATTTTGCATTTGGAG 57.095 29.630 0.00 0.00 0.00 3.86
183 184 9.645059 TCACGAATTTTATATTTTGCATTTGGA 57.355 25.926 0.00 0.00 0.00 3.53
246 247 6.666678 TGCCTTCATCTATCTCTGGATTTTT 58.333 36.000 0.00 0.00 33.71 1.94
247 248 6.257994 TGCCTTCATCTATCTCTGGATTTT 57.742 37.500 0.00 0.00 33.71 1.82
248 249 5.901413 TGCCTTCATCTATCTCTGGATTT 57.099 39.130 0.00 0.00 33.71 2.17
249 250 7.565190 TTATGCCTTCATCTATCTCTGGATT 57.435 36.000 0.00 0.00 34.22 3.01
250 251 7.566569 CATTATGCCTTCATCTATCTCTGGAT 58.433 38.462 0.00 0.00 34.22 3.41
251 252 6.575847 GCATTATGCCTTCATCTATCTCTGGA 60.576 42.308 5.80 0.00 37.42 3.86
252 253 5.585445 GCATTATGCCTTCATCTATCTCTGG 59.415 44.000 5.80 0.00 37.42 3.86
253 254 6.092396 GTGCATTATGCCTTCATCTATCTCTG 59.908 42.308 15.06 0.00 44.23 3.35
254 255 6.171921 GTGCATTATGCCTTCATCTATCTCT 58.828 40.000 15.06 0.00 44.23 3.10
255 256 5.936372 TGTGCATTATGCCTTCATCTATCTC 59.064 40.000 15.06 0.00 44.23 2.75
256 257 5.872963 TGTGCATTATGCCTTCATCTATCT 58.127 37.500 15.06 0.00 44.23 1.98
257 258 6.206243 ACTTGTGCATTATGCCTTCATCTATC 59.794 38.462 15.06 0.00 44.23 2.08
258 259 6.016527 CACTTGTGCATTATGCCTTCATCTAT 60.017 38.462 15.06 0.00 44.23 1.98
259 260 5.297527 CACTTGTGCATTATGCCTTCATCTA 59.702 40.000 15.06 0.00 44.23 1.98
260 261 4.097437 CACTTGTGCATTATGCCTTCATCT 59.903 41.667 15.06 0.00 44.23 2.90
261 262 4.142315 ACACTTGTGCATTATGCCTTCATC 60.142 41.667 15.06 0.00 44.23 2.92
262 263 3.765511 ACACTTGTGCATTATGCCTTCAT 59.234 39.130 15.06 0.00 44.23 2.57
263 264 3.057386 CACACTTGTGCATTATGCCTTCA 60.057 43.478 15.06 8.49 44.23 3.02
264 265 3.504863 CACACTTGTGCATTATGCCTTC 58.495 45.455 15.06 6.02 44.23 3.46
265 266 3.581024 CACACTTGTGCATTATGCCTT 57.419 42.857 15.06 0.00 44.23 4.35
276 277 7.888839 TTCGTCCTGAAAATTTACACACTTGTG 60.889 37.037 7.84 7.84 41.84 3.33
277 278 5.587043 TCGTCCTGAAAATTTACACACTTGT 59.413 36.000 0.00 0.00 40.02 3.16
278 279 6.055231 TCGTCCTGAAAATTTACACACTTG 57.945 37.500 0.00 0.00 0.00 3.16
279 280 6.687081 TTCGTCCTGAAAATTTACACACTT 57.313 33.333 0.00 0.00 32.37 3.16
280 281 6.687081 TTTCGTCCTGAAAATTTACACACT 57.313 33.333 0.00 0.00 43.46 3.55
299 300 4.907582 GTCCTTTTTGTCCAACGTATTTCG 59.092 41.667 0.00 0.00 46.00 3.46
300 301 5.823353 TGTCCTTTTTGTCCAACGTATTTC 58.177 37.500 0.00 0.00 0.00 2.17
301 302 5.838531 TGTCCTTTTTGTCCAACGTATTT 57.161 34.783 0.00 0.00 0.00 1.40
302 303 5.838531 TTGTCCTTTTTGTCCAACGTATT 57.161 34.783 0.00 0.00 0.00 1.89
303 304 5.838531 TTTGTCCTTTTTGTCCAACGTAT 57.161 34.783 0.00 0.00 0.00 3.06
304 305 5.591067 AGATTTGTCCTTTTTGTCCAACGTA 59.409 36.000 0.00 0.00 0.00 3.57
305 306 4.401202 AGATTTGTCCTTTTTGTCCAACGT 59.599 37.500 0.00 0.00 0.00 3.99
306 307 4.739716 CAGATTTGTCCTTTTTGTCCAACG 59.260 41.667 0.00 0.00 0.00 4.10
307 308 5.901552 TCAGATTTGTCCTTTTTGTCCAAC 58.098 37.500 0.00 0.00 0.00 3.77
308 309 6.729690 ATCAGATTTGTCCTTTTTGTCCAA 57.270 33.333 0.00 0.00 0.00 3.53
309 310 7.004086 AGTATCAGATTTGTCCTTTTTGTCCA 58.996 34.615 0.00 0.00 0.00 4.02
310 311 7.454260 AGTATCAGATTTGTCCTTTTTGTCC 57.546 36.000 0.00 0.00 0.00 4.02
311 312 9.750125 AAAAGTATCAGATTTGTCCTTTTTGTC 57.250 29.630 0.00 0.00 30.30 3.18
318 319 9.349713 TGTGTTAAAAAGTATCAGATTTGTCCT 57.650 29.630 0.00 0.00 0.00 3.85
336 337 9.778741 GGAGGATCAATAGTATCATGTGTTAAA 57.221 33.333 0.00 0.00 36.25 1.52
337 338 9.159254 AGGAGGATCAATAGTATCATGTGTTAA 57.841 33.333 0.00 0.00 36.25 2.01
338 339 8.727100 AGGAGGATCAATAGTATCATGTGTTA 57.273 34.615 0.00 0.00 36.25 2.41
339 340 7.623999 AGGAGGATCAATAGTATCATGTGTT 57.376 36.000 0.00 0.00 36.25 3.32
340 341 8.727100 TTAGGAGGATCAATAGTATCATGTGT 57.273 34.615 0.00 0.00 36.25 3.72
341 342 9.429359 GTTTAGGAGGATCAATAGTATCATGTG 57.571 37.037 0.00 0.00 36.25 3.21
342 343 8.598041 GGTTTAGGAGGATCAATAGTATCATGT 58.402 37.037 0.00 0.00 36.25 3.21
343 344 8.043710 GGGTTTAGGAGGATCAATAGTATCATG 58.956 40.741 0.00 0.00 36.25 3.07
344 345 7.964293 AGGGTTTAGGAGGATCAATAGTATCAT 59.036 37.037 0.00 0.00 36.25 2.45
345 346 7.235606 CAGGGTTTAGGAGGATCAATAGTATCA 59.764 40.741 0.00 0.00 36.25 2.15
346 347 7.455008 TCAGGGTTTAGGAGGATCAATAGTATC 59.545 40.741 0.00 0.00 36.25 2.24
347 348 7.313731 TCAGGGTTTAGGAGGATCAATAGTAT 58.686 38.462 0.00 0.00 36.25 2.12
348 349 6.689561 TCAGGGTTTAGGAGGATCAATAGTA 58.310 40.000 0.00 0.00 36.25 1.82
349 350 5.538877 TCAGGGTTTAGGAGGATCAATAGT 58.461 41.667 0.00 0.00 36.25 2.12
350 351 6.500589 TTCAGGGTTTAGGAGGATCAATAG 57.499 41.667 0.00 0.00 36.25 1.73
351 352 7.465900 AATTCAGGGTTTAGGAGGATCAATA 57.534 36.000 0.00 0.00 36.25 1.90
352 353 6.347061 AATTCAGGGTTTAGGAGGATCAAT 57.653 37.500 0.00 0.00 36.25 2.57
353 354 5.796502 AATTCAGGGTTTAGGAGGATCAA 57.203 39.130 0.00 0.00 36.25 2.57
354 355 5.015178 ACAAATTCAGGGTTTAGGAGGATCA 59.985 40.000 0.00 0.00 36.25 2.92
355 356 5.510430 ACAAATTCAGGGTTTAGGAGGATC 58.490 41.667 0.00 0.00 0.00 3.36
356 357 5.254032 AGACAAATTCAGGGTTTAGGAGGAT 59.746 40.000 0.00 0.00 0.00 3.24
357 358 4.601857 AGACAAATTCAGGGTTTAGGAGGA 59.398 41.667 0.00 0.00 0.00 3.71
358 359 4.923415 AGACAAATTCAGGGTTTAGGAGG 58.077 43.478 0.00 0.00 0.00 4.30
359 360 6.901081 AAAGACAAATTCAGGGTTTAGGAG 57.099 37.500 0.00 0.00 0.00 3.69
360 361 7.669089 AAAAAGACAAATTCAGGGTTTAGGA 57.331 32.000 0.00 0.00 0.00 2.94
381 382 6.030849 CGTTGAAATGTGACCTGTACAAAAA 58.969 36.000 0.00 0.00 0.00 1.94
382 383 5.124138 ACGTTGAAATGTGACCTGTACAAAA 59.876 36.000 0.00 0.00 0.00 2.44
383 384 4.636648 ACGTTGAAATGTGACCTGTACAAA 59.363 37.500 0.00 0.00 0.00 2.83
384 385 4.193090 ACGTTGAAATGTGACCTGTACAA 58.807 39.130 0.00 0.00 0.00 2.41
385 386 3.799366 ACGTTGAAATGTGACCTGTACA 58.201 40.909 0.00 0.00 0.00 2.90
386 387 6.476243 AATACGTTGAAATGTGACCTGTAC 57.524 37.500 0.00 0.00 0.00 2.90
387 388 6.706716 TGAAATACGTTGAAATGTGACCTGTA 59.293 34.615 0.00 0.00 0.00 2.74
388 389 5.529430 TGAAATACGTTGAAATGTGACCTGT 59.471 36.000 0.00 0.00 0.00 4.00
389 390 5.996219 TGAAATACGTTGAAATGTGACCTG 58.004 37.500 0.00 0.00 0.00 4.00
390 391 6.128007 GGATGAAATACGTTGAAATGTGACCT 60.128 38.462 0.00 0.00 0.00 3.85
391 392 6.027749 GGATGAAATACGTTGAAATGTGACC 58.972 40.000 0.00 0.00 0.00 4.02
392 393 6.742718 CAGGATGAAATACGTTGAAATGTGAC 59.257 38.462 0.00 0.00 39.69 3.67
393 394 6.652900 TCAGGATGAAATACGTTGAAATGTGA 59.347 34.615 0.00 0.00 45.97 3.58
394 395 6.841119 TCAGGATGAAATACGTTGAAATGTG 58.159 36.000 0.00 0.00 45.97 3.21
410 411 3.856638 GCGTGTGCAAAATTTCAGGATGA 60.857 43.478 0.00 0.00 42.72 2.92
411 412 2.409378 GCGTGTGCAAAATTTCAGGATG 59.591 45.455 0.00 0.00 42.15 3.51
412 413 2.676076 GCGTGTGCAAAATTTCAGGAT 58.324 42.857 0.00 0.00 42.15 3.24
413 414 2.132740 GCGTGTGCAAAATTTCAGGA 57.867 45.000 0.00 0.00 42.15 3.86
426 427 3.015293 GATGTGAGGCGTGCGTGTG 62.015 63.158 0.00 0.00 0.00 3.82
427 428 2.738521 GATGTGAGGCGTGCGTGT 60.739 61.111 0.00 0.00 0.00 4.49
428 429 3.490759 GGATGTGAGGCGTGCGTG 61.491 66.667 0.00 0.00 0.00 5.34
429 430 3.240134 AAGGATGTGAGGCGTGCGT 62.240 57.895 0.00 0.00 0.00 5.24
430 431 2.434884 AAGGATGTGAGGCGTGCG 60.435 61.111 0.00 0.00 0.00 5.34
431 432 1.237285 AACAAGGATGTGAGGCGTGC 61.237 55.000 0.00 0.00 40.46 5.34
432 433 1.238439 AAACAAGGATGTGAGGCGTG 58.762 50.000 0.00 0.00 40.46 5.34
433 434 2.038557 AGTAAACAAGGATGTGAGGCGT 59.961 45.455 0.00 0.00 40.46 5.68
434 435 2.699954 AGTAAACAAGGATGTGAGGCG 58.300 47.619 0.00 0.00 40.46 5.52
435 436 3.366374 GCAAGTAAACAAGGATGTGAGGC 60.366 47.826 0.00 0.00 40.46 4.70
436 437 3.820467 TGCAAGTAAACAAGGATGTGAGG 59.180 43.478 0.00 0.00 40.46 3.86
437 438 4.275689 TGTGCAAGTAAACAAGGATGTGAG 59.724 41.667 0.00 0.00 40.46 3.51
438 439 4.203226 TGTGCAAGTAAACAAGGATGTGA 58.797 39.130 0.00 0.00 40.46 3.58
439 440 4.275689 TCTGTGCAAGTAAACAAGGATGTG 59.724 41.667 0.00 0.00 40.46 3.21
440 441 4.275936 GTCTGTGCAAGTAAACAAGGATGT 59.724 41.667 0.00 0.00 43.14 3.06
441 442 4.516698 AGTCTGTGCAAGTAAACAAGGATG 59.483 41.667 0.00 0.00 0.00 3.51
442 443 4.718961 AGTCTGTGCAAGTAAACAAGGAT 58.281 39.130 0.00 0.00 0.00 3.24
443 444 4.150897 AGTCTGTGCAAGTAAACAAGGA 57.849 40.909 0.00 0.00 0.00 3.36
444 445 4.900635 AAGTCTGTGCAAGTAAACAAGG 57.099 40.909 0.00 0.00 0.00 3.61
445 446 6.806249 TGAAAAAGTCTGTGCAAGTAAACAAG 59.194 34.615 0.00 0.00 0.00 3.16
446 447 6.682746 TGAAAAAGTCTGTGCAAGTAAACAA 58.317 32.000 0.00 0.00 0.00 2.83
447 448 6.150307 TCTGAAAAAGTCTGTGCAAGTAAACA 59.850 34.615 0.00 0.00 0.00 2.83
448 449 6.551736 TCTGAAAAAGTCTGTGCAAGTAAAC 58.448 36.000 0.00 0.00 0.00 2.01
449 450 6.751514 TCTGAAAAAGTCTGTGCAAGTAAA 57.248 33.333 0.00 0.00 0.00 2.01
450 451 6.942532 ATCTGAAAAAGTCTGTGCAAGTAA 57.057 33.333 0.00 0.00 0.00 2.24
451 452 6.942532 AATCTGAAAAAGTCTGTGCAAGTA 57.057 33.333 0.00 0.00 0.00 2.24
452 453 5.841957 AATCTGAAAAAGTCTGTGCAAGT 57.158 34.783 0.00 0.00 0.00 3.16
453 454 7.529880 AAAAATCTGAAAAAGTCTGTGCAAG 57.470 32.000 0.00 0.00 0.00 4.01
509 510 1.960689 CCACCATGAAGACCGGTTTTT 59.039 47.619 9.42 6.79 0.00 1.94
510 511 1.616159 CCACCATGAAGACCGGTTTT 58.384 50.000 9.42 10.10 0.00 2.43
511 512 0.893727 GCCACCATGAAGACCGGTTT 60.894 55.000 9.42 0.00 0.00 3.27
512 513 1.303317 GCCACCATGAAGACCGGTT 60.303 57.895 9.42 0.00 0.00 4.44
513 514 2.351276 GCCACCATGAAGACCGGT 59.649 61.111 6.92 6.92 0.00 5.28
514 515 1.746615 CTGCCACCATGAAGACCGG 60.747 63.158 0.00 0.00 0.00 5.28
515 516 0.742281 CTCTGCCACCATGAAGACCG 60.742 60.000 0.00 0.00 0.00 4.79
516 517 0.615331 TCTCTGCCACCATGAAGACC 59.385 55.000 0.00 0.00 0.00 3.85
517 518 2.011046 GCTCTCTGCCACCATGAAGAC 61.011 57.143 0.00 0.00 35.15 3.01
518 519 0.251354 GCTCTCTGCCACCATGAAGA 59.749 55.000 0.00 0.00 35.15 2.87
519 520 2.777969 GCTCTCTGCCACCATGAAG 58.222 57.895 0.00 0.00 35.15 3.02
529 530 1.160137 ATGTCGTTTTGGCTCTCTGC 58.840 50.000 0.00 0.00 41.94 4.26
530 531 4.631377 TGATAATGTCGTTTTGGCTCTCTG 59.369 41.667 0.00 0.00 0.00 3.35
531 532 4.832248 TGATAATGTCGTTTTGGCTCTCT 58.168 39.130 0.00 0.00 0.00 3.10
532 533 5.525378 AGATGATAATGTCGTTTTGGCTCTC 59.475 40.000 0.00 0.00 0.00 3.20
533 534 5.431765 AGATGATAATGTCGTTTTGGCTCT 58.568 37.500 0.00 0.00 0.00 4.09
534 535 5.741388 AGATGATAATGTCGTTTTGGCTC 57.259 39.130 0.00 0.00 0.00 4.70
535 536 7.472543 GTTTAGATGATAATGTCGTTTTGGCT 58.527 34.615 0.00 0.00 0.00 4.75
536 537 6.410914 CGTTTAGATGATAATGTCGTTTTGGC 59.589 38.462 0.00 0.00 0.00 4.52
537 538 6.410914 GCGTTTAGATGATAATGTCGTTTTGG 59.589 38.462 0.00 0.00 0.00 3.28
538 539 7.180079 AGCGTTTAGATGATAATGTCGTTTTG 58.820 34.615 0.00 0.00 0.00 2.44
539 540 7.303634 AGCGTTTAGATGATAATGTCGTTTT 57.696 32.000 0.00 0.00 0.00 2.43
540 541 6.903883 AGCGTTTAGATGATAATGTCGTTT 57.096 33.333 0.00 0.00 0.00 3.60
541 542 6.903883 AAGCGTTTAGATGATAATGTCGTT 57.096 33.333 0.00 0.00 0.00 3.85
542 543 6.903883 AAAGCGTTTAGATGATAATGTCGT 57.096 33.333 0.00 0.00 0.00 4.34
575 576 9.075678 GCAACAGTATTAGTACTCCCTCTATAA 57.924 37.037 0.00 0.00 39.12 0.98
576 577 7.389884 CGCAACAGTATTAGTACTCCCTCTATA 59.610 40.741 0.00 0.00 39.12 1.31
577 578 6.207025 CGCAACAGTATTAGTACTCCCTCTAT 59.793 42.308 0.00 0.00 39.12 1.98
578 579 5.530171 CGCAACAGTATTAGTACTCCCTCTA 59.470 44.000 0.00 0.00 39.12 2.43
579 580 4.338682 CGCAACAGTATTAGTACTCCCTCT 59.661 45.833 0.00 0.00 39.12 3.69
580 581 4.337555 TCGCAACAGTATTAGTACTCCCTC 59.662 45.833 0.00 0.00 39.12 4.30
581 582 4.275810 TCGCAACAGTATTAGTACTCCCT 58.724 43.478 0.00 0.00 39.12 4.20
582 583 4.608951 CTCGCAACAGTATTAGTACTCCC 58.391 47.826 0.00 0.00 39.12 4.30
583 584 4.043073 GCTCGCAACAGTATTAGTACTCC 58.957 47.826 0.00 0.00 39.12 3.85
584 585 3.724751 CGCTCGCAACAGTATTAGTACTC 59.275 47.826 0.00 0.00 39.12 2.59
585 586 3.488721 CCGCTCGCAACAGTATTAGTACT 60.489 47.826 0.00 0.00 41.84 2.73
586 587 2.787680 CCGCTCGCAACAGTATTAGTAC 59.212 50.000 0.00 0.00 0.00 2.73
587 588 2.684374 TCCGCTCGCAACAGTATTAGTA 59.316 45.455 0.00 0.00 0.00 1.82
588 589 1.475280 TCCGCTCGCAACAGTATTAGT 59.525 47.619 0.00 0.00 0.00 2.24
589 590 2.203800 TCCGCTCGCAACAGTATTAG 57.796 50.000 0.00 0.00 0.00 1.73
590 591 2.536365 CTTCCGCTCGCAACAGTATTA 58.464 47.619 0.00 0.00 0.00 0.98
591 592 1.359848 CTTCCGCTCGCAACAGTATT 58.640 50.000 0.00 0.00 0.00 1.89
592 593 1.084370 GCTTCCGCTCGCAACAGTAT 61.084 55.000 0.00 0.00 0.00 2.12
593 594 1.736645 GCTTCCGCTCGCAACAGTA 60.737 57.895 0.00 0.00 0.00 2.74
594 595 3.044305 GCTTCCGCTCGCAACAGT 61.044 61.111 0.00 0.00 0.00 3.55
595 596 3.020026 CTGCTTCCGCTCGCAACAG 62.020 63.158 0.00 0.00 35.46 3.16
596 597 3.043713 CTGCTTCCGCTCGCAACA 61.044 61.111 0.00 0.00 35.46 3.33
597 598 4.451652 GCTGCTTCCGCTCGCAAC 62.452 66.667 0.00 0.00 35.46 4.17
621 622 0.323629 CGTGGTCCTCTTTTGCCCTA 59.676 55.000 0.00 0.00 0.00 3.53
622 623 1.073199 CGTGGTCCTCTTTTGCCCT 59.927 57.895 0.00 0.00 0.00 5.19
630 631 1.002379 AGCTCGTACGTGGTCCTCT 60.002 57.895 16.05 1.96 0.00 3.69
636 637 0.029567 GGATCTCAGCTCGTACGTGG 59.970 60.000 16.05 10.57 0.00 4.94
643 644 1.880340 GCCGTTGGATCTCAGCTCG 60.880 63.158 0.00 0.00 0.00 5.03
734 735 4.859629 AATTAATTTGGACGACGCTCTC 57.140 40.909 0.00 0.00 0.00 3.20
886 897 1.202533 AGTTAATGGATCCGCCGTCTG 60.203 52.381 7.39 0.00 40.66 3.51
948 960 2.976840 GAGATTGTGCGCGGCCAAA 61.977 57.895 8.83 0.00 0.00 3.28
969 981 2.484417 CGTAGCTAGGTAGGGTTCGAGA 60.484 54.545 12.72 0.00 0.00 4.04
1050 1062 0.323816 TGGCGGAATTGTAATGCCCA 60.324 50.000 0.00 0.00 45.12 5.36
1119 1131 2.580322 TGAATCCAGTCCAGCCCATTTA 59.420 45.455 0.00 0.00 0.00 1.40
1138 1150 4.937201 TTACTGAACTGAACTGAGCTGA 57.063 40.909 0.00 0.00 0.00 4.26
1139 1151 5.121454 GGATTTACTGAACTGAACTGAGCTG 59.879 44.000 0.00 0.00 0.00 4.24
1140 1152 5.241662 GGATTTACTGAACTGAACTGAGCT 58.758 41.667 0.00 0.00 0.00 4.09
1141 1153 4.393371 GGGATTTACTGAACTGAACTGAGC 59.607 45.833 0.00 0.00 0.00 4.26
1142 1154 5.799213 AGGGATTTACTGAACTGAACTGAG 58.201 41.667 0.00 0.00 0.00 3.35
1216 1238 3.745975 TGAGTGGATTAAACAAGCGACTG 59.254 43.478 0.00 0.00 27.51 3.51
1220 1242 3.745975 TGAGTGAGTGGATTAAACAAGCG 59.254 43.478 0.00 0.00 0.00 4.68
1257 1279 2.181021 GTACGCCGTGTCTCCCTG 59.819 66.667 0.00 0.00 0.00 4.45
1262 1284 2.649034 CACCTGTACGCCGTGTCT 59.351 61.111 0.00 0.00 0.00 3.41
1304 1326 0.919981 CGTCGCTGAGAAGCTTCATC 59.080 55.000 27.57 20.39 0.00 2.92
1340 1362 2.493675 GCTCCCAAACCCAATCTTTCTC 59.506 50.000 0.00 0.00 0.00 2.87
1459 1481 1.286880 CTTACCGGAACCGACACGT 59.713 57.895 9.46 6.48 42.83 4.49
1566 1588 2.076863 CTTCCCTTTAAGACAGCGGTG 58.923 52.381 14.13 14.13 0.00 4.94
1673 1695 3.601981 GTGTTCGGCGCGAGATAG 58.398 61.111 12.10 0.00 37.14 2.08
1685 1707 1.295792 TGACAAGCTTGGTCGTGTTC 58.704 50.000 29.18 16.20 38.10 3.18
1866 3579 1.743623 CAAGTGCGGCCGGAATGTA 60.744 57.895 29.38 0.00 0.00 2.29
1875 3588 1.268352 TGTAATTTCCACAAGTGCGGC 59.732 47.619 0.00 0.00 0.00 6.53
2042 3772 4.201950 GCTACCCATTTGTTATGCTCTGTG 60.202 45.833 0.00 0.00 0.00 3.66
2279 4122 6.538742 AGGTCACTCAAATGTAATTCCGTATG 59.461 38.462 0.00 0.00 33.67 2.39
2333 4582 7.014905 ACTGATTGAGCAAACATTATATGCCAT 59.985 33.333 0.00 0.00 40.93 4.40
2397 4647 5.076873 GGGAGCATAGACAGACTCTTCTAT 58.923 45.833 0.00 0.00 35.77 1.98
2492 4742 0.169672 CAAACTGATTGGCCAGAGCG 59.830 55.000 5.11 0.00 41.24 5.03
2591 4841 1.454847 TTCAACACCGGCCAAGCTT 60.455 52.632 0.00 0.00 0.00 3.74
2601 4851 5.932303 TCTCTAAAGCTACATGTTCAACACC 59.068 40.000 2.30 0.00 0.00 4.16
2618 4868 4.498850 GCAGATCGAGCTGATGTCTCTAAA 60.499 45.833 33.37 0.00 37.47 1.85
2739 4995 4.538746 TGTTACATACATGTTGTCCGGA 57.461 40.909 2.30 0.00 41.97 5.14
2833 5127 8.547069 TGCAAACATAATGTTAAAGAAAACAGC 58.453 29.630 0.00 0.00 40.14 4.40
2974 5269 0.110192 CTCGCGGCTTCTTGGAAAAC 60.110 55.000 6.13 0.00 0.00 2.43
3025 5323 3.608073 GTGTCAACAAACTTGTGCAGAAC 59.392 43.478 0.00 0.00 41.31 3.01
3068 5366 8.212317 ACCCATAACGTAGCGTAATTAAAAAT 57.788 30.769 0.00 0.00 39.99 1.82
3084 5382 3.085533 TGTGGAATTGGAACCCATAACG 58.914 45.455 0.00 0.00 31.53 3.18
3113 5425 1.409790 TGAATTACTGCCATGCCATGC 59.590 47.619 0.00 0.00 0.00 4.06
3155 5467 1.377725 CTCCGCAATCTGCAAGGGT 60.378 57.895 0.00 0.00 45.36 4.34
3158 5470 1.396301 GTCTTCTCCGCAATCTGCAAG 59.604 52.381 0.00 0.00 45.36 4.01
3459 5783 4.465512 GCCCGACATTGCACTGCG 62.466 66.667 3.61 8.65 0.00 5.18
3813 6143 4.790962 CCGCATGGAGCAGGCACT 62.791 66.667 0.00 0.00 41.48 4.40
4002 6350 2.355363 TGTTCGTCACCGCCTTCG 60.355 61.111 0.00 0.00 0.00 3.79
4185 6551 3.198068 AGCAGCGATTACATTACACCAG 58.802 45.455 0.00 0.00 0.00 4.00
4186 6552 3.260475 AGCAGCGATTACATTACACCA 57.740 42.857 0.00 0.00 0.00 4.17
4188 6554 4.376450 GCTAGCAGCGATTACATTACAC 57.624 45.455 10.63 0.00 0.00 2.90
4209 6585 5.722263 CATATCTTCCATCAGGAGTAGCAG 58.278 45.833 0.00 0.00 46.74 4.24
4213 6589 4.284490 GGTGCATATCTTCCATCAGGAGTA 59.716 45.833 0.00 0.00 46.74 2.59
4236 6612 1.361668 CCATCCACTCGGCAAGTTCG 61.362 60.000 0.00 0.00 35.45 3.95
4503 6899 4.622740 CAGAAAAGTTTCGAAATGCATCCC 59.377 41.667 14.69 0.00 41.92 3.85
4507 6903 3.068024 AGGCAGAAAAGTTTCGAAATGCA 59.932 39.130 24.98 0.00 41.92 3.96
4531 6927 5.969423 AGAATCGTTTCGGAGTAAACCATA 58.031 37.500 0.72 0.00 36.24 2.74
4543 6939 7.519002 AGAAACCAAGAATTAGAATCGTTTCG 58.481 34.615 0.00 0.00 41.53 3.46
4545 6941 8.846211 TGAAGAAACCAAGAATTAGAATCGTTT 58.154 29.630 0.00 0.00 0.00 3.60
4547 6943 7.979444 TGAAGAAACCAAGAATTAGAATCGT 57.021 32.000 0.00 0.00 0.00 3.73
4559 6955 9.533253 AACAGAAAATGTATTGAAGAAACCAAG 57.467 29.630 0.00 0.00 43.00 3.61
4589 6985 5.296151 AGACACTGGAAATGTTTCAGAGA 57.704 39.130 3.26 0.00 38.92 3.10
4603 6999 4.219033 CGGAAAAATTTCGAAGACACTGG 58.781 43.478 0.00 0.00 38.06 4.00
4605 7001 5.065474 TGAACGGAAAAATTTCGAAGACACT 59.935 36.000 0.00 0.00 38.06 3.55
4618 7014 5.293569 GTCTGAGAGAAAGTGAACGGAAAAA 59.706 40.000 0.00 0.00 0.00 1.94
4628 7024 5.852827 AGAAAAGGAGTCTGAGAGAAAGTG 58.147 41.667 0.00 0.00 0.00 3.16
4638 7034 6.634805 TGCTGAGTAATAGAAAAGGAGTCTG 58.365 40.000 0.00 0.00 0.00 3.51
4653 7059 7.922811 CACAAGTGTCATATATCTGCTGAGTAA 59.077 37.037 0.00 0.00 0.00 2.24
4678 7089 1.561643 TCCAAACCTGTGTTTTGGCA 58.438 45.000 8.68 0.00 41.92 4.92
4680 7091 3.601443 TGTTCCAAACCTGTGTTTTGG 57.399 42.857 7.42 7.42 41.92 3.28
4709 7143 4.834496 TGCATCTCACTTCCTTTCCATTTT 59.166 37.500 0.00 0.00 0.00 1.82
4777 7212 1.200020 GTTTCTTGTCCTGCATTCCGG 59.800 52.381 0.00 0.00 0.00 5.14
4886 7760 5.766174 GGACCCACATCGGCTATAAAAATTA 59.234 40.000 0.00 0.00 0.00 1.40
4906 7780 1.541233 CGAACCATGCATCCTAGGACC 60.541 57.143 15.42 9.02 0.00 4.46
4907 7781 1.541233 CCGAACCATGCATCCTAGGAC 60.541 57.143 15.42 2.55 0.00 3.85
4908 7782 0.758734 CCGAACCATGCATCCTAGGA 59.241 55.000 15.46 15.46 0.00 2.94
4909 7783 0.469917 ACCGAACCATGCATCCTAGG 59.530 55.000 0.82 0.82 0.00 3.02
4910 7784 1.586422 CACCGAACCATGCATCCTAG 58.414 55.000 0.00 0.00 0.00 3.02
4911 7785 0.463654 GCACCGAACCATGCATCCTA 60.464 55.000 0.00 0.00 41.65 2.94
4912 7786 1.750399 GCACCGAACCATGCATCCT 60.750 57.895 0.00 0.00 41.65 3.24
4913 7787 2.774799 GGCACCGAACCATGCATCC 61.775 63.158 0.00 0.00 43.93 3.51
4914 7788 2.774799 GGGCACCGAACCATGCATC 61.775 63.158 0.00 0.00 43.93 3.91
4967 7841 0.398381 AAGGTTTCTGGGCAGCCAAA 60.398 50.000 15.19 2.09 0.00 3.28
5009 7884 8.624367 TTTTCAACCGTTGAGAATAAAGGATA 57.376 30.769 13.51 0.00 41.38 2.59
5010 7885 7.309194 CCTTTTCAACCGTTGAGAATAAAGGAT 60.309 37.037 30.67 0.00 41.38 3.24
5017 7892 3.821033 CTCCCTTTTCAACCGTTGAGAAT 59.179 43.478 15.45 0.00 41.38 2.40
5022 7897 1.001378 CTGCTCCCTTTTCAACCGTTG 60.001 52.381 4.78 4.78 0.00 4.10
5029 7904 4.104102 TCCTAAAGAACTGCTCCCTTTTCA 59.896 41.667 0.00 0.00 32.92 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.