Multiple sequence alignment - TraesCS3D01G017100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G017100 chr3D 100.000 3314 0 0 1 3314 5861015 5864328 0.000000e+00 6120.0
1 TraesCS3D01G017100 chr3D 80.760 421 55 18 2774 3178 56415295 56415705 4.150000e-79 305.0
2 TraesCS3D01G017100 chr3A 86.832 1572 108 39 842 2390 15304236 15302741 0.000000e+00 1664.0
3 TraesCS3D01G017100 chr3A 89.963 538 24 16 842 1370 11640253 11640769 0.000000e+00 667.0
4 TraesCS3D01G017100 chr3A 91.327 196 9 5 1446 1640 11640866 11641054 9.120000e-66 261.0
5 TraesCS3D01G017100 chr3A 85.281 231 30 4 388 617 11636865 11637092 5.530000e-58 235.0
6 TraesCS3D01G017100 chr3A 88.571 175 18 2 102 276 15310909 15310737 9.320000e-51 211.0
7 TraesCS3D01G017100 chr3A 94.521 73 4 0 1298 1370 11640798 11640870 2.700000e-21 113.0
8 TraesCS3D01G017100 chr3A 90.000 60 5 1 41 100 75414766 75414708 3.550000e-10 76.8
9 TraesCS3D01G017100 chr1D 85.897 1645 99 46 943 2519 394274388 394275967 0.000000e+00 1629.0
10 TraesCS3D01G017100 chrUn 91.426 1073 50 23 1452 2505 40584397 40583348 0.000000e+00 1434.0
11 TraesCS3D01G017100 chrUn 85.762 597 53 11 2672 3248 40578745 40578161 1.320000e-168 603.0
12 TraesCS3D01G017100 chrUn 90.762 433 29 8 917 1344 40584785 40584359 4.800000e-158 568.0
13 TraesCS3D01G017100 chrUn 96.875 64 2 0 2507 2570 40579639 40579576 1.260000e-19 108.0
14 TraesCS3D01G017100 chrUn 90.411 73 7 0 3242 3314 40574847 40574775 2.720000e-16 97.1
15 TraesCS3D01G017100 chr3B 93.857 879 38 3 1452 2323 11660157 11659288 0.000000e+00 1310.0
16 TraesCS3D01G017100 chr3B 84.346 428 38 16 931 1344 11660530 11660118 3.100000e-105 392.0
17 TraesCS3D01G017100 chr3B 80.847 496 68 18 2698 3179 763261353 763261835 6.760000e-97 364.0
18 TraesCS3D01G017100 chr7B 92.287 752 49 5 1563 2314 40287313 40286571 0.000000e+00 1059.0
19 TraesCS3D01G017100 chr7B 87.677 779 80 8 1543 2320 608301267 608300504 0.000000e+00 893.0
20 TraesCS3D01G017100 chr7B 77.213 610 66 45 818 1407 40287920 40287364 4.180000e-74 289.0
21 TraesCS3D01G017100 chr7B 82.625 259 29 15 994 1245 608301607 608301358 7.200000e-52 215.0
22 TraesCS3D01G017100 chr7A 90.777 759 55 6 1562 2314 90481088 90480339 0.000000e+00 1000.0
23 TraesCS3D01G017100 chr7A 87.902 777 81 7 1543 2314 644527009 644526241 0.000000e+00 902.0
24 TraesCS3D01G017100 chr7A 82.536 481 60 15 2698 3172 191202858 191202396 5.150000e-108 401.0
25 TraesCS3D01G017100 chr7A 80.097 412 41 24 2801 3173 8231573 8231164 5.450000e-68 268.0
26 TraesCS3D01G017100 chr7A 82.500 240 30 11 994 1227 644527341 644527108 2.020000e-47 200.0
27 TraesCS3D01G017100 chr7A 74.044 497 67 35 2685 3172 90373146 90373589 2.660000e-31 147.0
28 TraesCS3D01G017100 chr7D 88.114 774 82 5 1543 2314 560286697 560285932 0.000000e+00 911.0
29 TraesCS3D01G017100 chr7D 84.876 767 99 13 1553 2314 42194791 42194037 0.000000e+00 758.0
30 TraesCS3D01G017100 chr7D 83.299 479 63 10 2698 3173 180969712 180970176 3.060000e-115 425.0
31 TraesCS3D01G017100 chr7D 79.691 453 50 18 2751 3179 529693698 529693264 4.180000e-74 289.0
32 TraesCS3D01G017100 chr7D 82.917 240 29 10 994 1227 560287028 560286795 4.330000e-49 206.0
33 TraesCS3D01G017100 chr7D 76.152 369 64 22 2672 3032 4906464 4906112 4.400000e-39 172.0
34 TraesCS3D01G017100 chr7D 87.413 143 15 3 3035 3176 634722347 634722207 9.520000e-36 161.0
35 TraesCS3D01G017100 chr7D 77.733 247 36 13 102 337 167634023 167634261 2.070000e-27 134.0
36 TraesCS3D01G017100 chr2B 82.486 531 58 25 2672 3173 473766711 473766187 1.830000e-117 433.0
37 TraesCS3D01G017100 chr2B 83.817 241 31 6 2938 3173 569126491 569126728 4.300000e-54 222.0
38 TraesCS3D01G017100 chr6B 82.192 438 55 10 2744 3173 638502525 638502947 4.070000e-94 355.0
39 TraesCS3D01G017100 chr6B 82.222 180 17 8 2347 2524 322882174 322882008 1.240000e-29 141.0
40 TraesCS3D01G017100 chr2A 85.804 317 33 12 2725 3032 499293870 499294183 3.190000e-85 326.0
41 TraesCS3D01G017100 chr4A 86.525 282 25 7 2126 2404 597112644 597112373 6.950000e-77 298.0
42 TraesCS3D01G017100 chr4A 76.471 238 38 14 115 337 470693813 470693579 2.700000e-21 113.0
43 TraesCS3D01G017100 chr5A 81.185 287 33 14 2774 3050 558310734 558310459 9.320000e-51 211.0
44 TraesCS3D01G017100 chr5A 85.185 162 21 3 3015 3174 283294145 283293985 2.650000e-36 163.0
45 TraesCS3D01G017100 chr1A 75.854 439 71 23 2750 3176 551896273 551896688 1.210000e-44 191.0
46 TraesCS3D01G017100 chr4B 82.927 205 23 7 2202 2404 10898188 10898382 1.220000e-39 174.0
47 TraesCS3D01G017100 chr4D 76.800 250 40 14 102 337 105123692 105123937 1.250000e-24 124.0
48 TraesCS3D01G017100 chr5B 76.404 178 31 9 2672 2843 596879124 596879296 5.890000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G017100 chr3D 5861015 5864328 3313 False 6120.00 6120 100.0000 1 3314 1 chr3D.!!$F1 3313
1 TraesCS3D01G017100 chr3A 15302741 15304236 1495 True 1664.00 1664 86.8320 842 2390 1 chr3A.!!$R1 1548
2 TraesCS3D01G017100 chr3A 11636865 11641054 4189 False 319.00 667 90.2730 388 1640 4 chr3A.!!$F1 1252
3 TraesCS3D01G017100 chr1D 394274388 394275967 1579 False 1629.00 1629 85.8970 943 2519 1 chr1D.!!$F1 1576
4 TraesCS3D01G017100 chrUn 40574775 40584785 10010 True 562.02 1434 91.0472 917 3314 5 chrUn.!!$R1 2397
5 TraesCS3D01G017100 chr3B 11659288 11660530 1242 True 851.00 1310 89.1015 931 2323 2 chr3B.!!$R1 1392
6 TraesCS3D01G017100 chr7B 40286571 40287920 1349 True 674.00 1059 84.7500 818 2314 2 chr7B.!!$R1 1496
7 TraesCS3D01G017100 chr7B 608300504 608301607 1103 True 554.00 893 85.1510 994 2320 2 chr7B.!!$R2 1326
8 TraesCS3D01G017100 chr7A 90480339 90481088 749 True 1000.00 1000 90.7770 1562 2314 1 chr7A.!!$R2 752
9 TraesCS3D01G017100 chr7A 644526241 644527341 1100 True 551.00 902 85.2010 994 2314 2 chr7A.!!$R4 1320
10 TraesCS3D01G017100 chr7D 42194037 42194791 754 True 758.00 758 84.8760 1553 2314 1 chr7D.!!$R2 761
11 TraesCS3D01G017100 chr7D 560285932 560287028 1096 True 558.50 911 85.5155 994 2314 2 chr7D.!!$R5 1320
12 TraesCS3D01G017100 chr2B 473766187 473766711 524 True 433.00 433 82.4860 2672 3173 1 chr2B.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 2395 0.035056 CTCATCCGGGTTGGCTTCTT 60.035 55.0 0.0 0.0 37.8 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2631 10322 0.174845 CTCACCGACGCCTCCAAATA 59.825 55.0 0.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.695606 GAGCAGCTGTCCCCGTGA 61.696 66.667 16.64 0.00 0.00 4.35
18 19 3.005539 AGCAGCTGTCCCCGTGAT 61.006 61.111 16.64 0.00 0.00 3.06
19 20 1.676678 GAGCAGCTGTCCCCGTGATA 61.677 60.000 16.64 0.00 0.00 2.15
20 21 1.220749 GCAGCTGTCCCCGTGATAA 59.779 57.895 16.64 0.00 0.00 1.75
21 22 0.392461 GCAGCTGTCCCCGTGATAAA 60.392 55.000 16.64 0.00 0.00 1.40
22 23 1.948611 GCAGCTGTCCCCGTGATAAAA 60.949 52.381 16.64 0.00 0.00 1.52
23 24 2.009774 CAGCTGTCCCCGTGATAAAAG 58.990 52.381 5.25 0.00 0.00 2.27
24 25 1.906574 AGCTGTCCCCGTGATAAAAGA 59.093 47.619 0.00 0.00 0.00 2.52
25 26 2.093447 AGCTGTCCCCGTGATAAAAGAG 60.093 50.000 0.00 0.00 0.00 2.85
26 27 2.354805 GCTGTCCCCGTGATAAAAGAGT 60.355 50.000 0.00 0.00 0.00 3.24
27 28 3.868754 GCTGTCCCCGTGATAAAAGAGTT 60.869 47.826 0.00 0.00 0.00 3.01
28 29 4.324267 CTGTCCCCGTGATAAAAGAGTTT 58.676 43.478 0.00 0.00 0.00 2.66
29 30 5.484715 CTGTCCCCGTGATAAAAGAGTTTA 58.515 41.667 0.00 0.00 33.76 2.01
30 31 5.484715 TGTCCCCGTGATAAAAGAGTTTAG 58.515 41.667 0.00 0.00 32.76 1.85
31 32 5.012354 TGTCCCCGTGATAAAAGAGTTTAGT 59.988 40.000 0.00 0.00 32.76 2.24
32 33 5.350640 GTCCCCGTGATAAAAGAGTTTAGTG 59.649 44.000 0.00 0.00 32.76 2.74
33 34 4.634443 CCCCGTGATAAAAGAGTTTAGTGG 59.366 45.833 0.00 0.00 32.76 4.00
34 35 5.484715 CCCGTGATAAAAGAGTTTAGTGGA 58.515 41.667 0.00 0.00 32.76 4.02
35 36 5.581085 CCCGTGATAAAAGAGTTTAGTGGAG 59.419 44.000 0.00 0.00 32.76 3.86
36 37 5.581085 CCGTGATAAAAGAGTTTAGTGGAGG 59.419 44.000 0.00 0.00 32.76 4.30
37 38 5.581085 CGTGATAAAAGAGTTTAGTGGAGGG 59.419 44.000 0.00 0.00 32.76 4.30
38 39 5.354513 GTGATAAAAGAGTTTAGTGGAGGGC 59.645 44.000 0.00 0.00 32.76 5.19
39 40 2.881111 AAAGAGTTTAGTGGAGGGCC 57.119 50.000 0.00 0.00 0.00 5.80
40 41 0.613777 AAGAGTTTAGTGGAGGGCCG 59.386 55.000 0.00 0.00 36.79 6.13
41 42 0.544595 AGAGTTTAGTGGAGGGCCGT 60.545 55.000 0.00 0.00 36.79 5.68
42 43 0.323957 GAGTTTAGTGGAGGGCCGTT 59.676 55.000 0.00 0.00 36.79 4.44
43 44 0.769247 AGTTTAGTGGAGGGCCGTTT 59.231 50.000 0.00 0.00 36.79 3.60
44 45 1.144298 AGTTTAGTGGAGGGCCGTTTT 59.856 47.619 0.00 0.00 36.79 2.43
45 46 1.268625 GTTTAGTGGAGGGCCGTTTTG 59.731 52.381 0.00 0.00 36.79 2.44
46 47 0.250989 TTAGTGGAGGGCCGTTTTGG 60.251 55.000 0.00 0.00 42.50 3.28
55 56 2.203422 CCGTTTTGGCTGTGGGGA 60.203 61.111 0.00 0.00 0.00 4.81
56 57 2.268076 CCGTTTTGGCTGTGGGGAG 61.268 63.158 0.00 0.00 0.00 4.30
57 58 2.919494 CGTTTTGGCTGTGGGGAGC 61.919 63.158 0.00 0.00 38.34 4.70
58 59 1.832167 GTTTTGGCTGTGGGGAGCA 60.832 57.895 0.00 0.00 41.08 4.26
59 60 1.155859 TTTTGGCTGTGGGGAGCAT 59.844 52.632 0.00 0.00 41.08 3.79
60 61 0.407528 TTTTGGCTGTGGGGAGCATA 59.592 50.000 0.00 0.00 41.08 3.14
61 62 0.630673 TTTGGCTGTGGGGAGCATAT 59.369 50.000 0.00 0.00 41.08 1.78
62 63 0.106569 TTGGCTGTGGGGAGCATATG 60.107 55.000 0.00 0.00 41.08 1.78
63 64 1.900498 GGCTGTGGGGAGCATATGC 60.900 63.158 20.36 20.36 41.08 3.14
77 78 4.871993 GCATATGCTTCCGGATGAATAG 57.128 45.455 20.64 8.64 38.21 1.73
78 79 4.256920 GCATATGCTTCCGGATGAATAGT 58.743 43.478 20.64 7.72 38.21 2.12
79 80 5.419542 GCATATGCTTCCGGATGAATAGTA 58.580 41.667 20.64 7.43 38.21 1.82
80 81 5.874810 GCATATGCTTCCGGATGAATAGTAA 59.125 40.000 20.64 1.38 38.21 2.24
81 82 6.371548 GCATATGCTTCCGGATGAATAGTAAA 59.628 38.462 20.64 1.01 38.21 2.01
82 83 7.066284 GCATATGCTTCCGGATGAATAGTAAAT 59.934 37.037 20.64 3.39 38.21 1.40
83 84 8.950210 CATATGCTTCCGGATGAATAGTAAATT 58.050 33.333 20.87 1.73 31.06 1.82
84 85 7.823745 ATGCTTCCGGATGAATAGTAAATTT 57.176 32.000 20.87 0.00 31.06 1.82
85 86 7.639113 TGCTTCCGGATGAATAGTAAATTTT 57.361 32.000 20.87 0.00 31.06 1.82
86 87 8.740123 TGCTTCCGGATGAATAGTAAATTTTA 57.260 30.769 20.87 0.00 31.06 1.52
87 88 9.349713 TGCTTCCGGATGAATAGTAAATTTTAT 57.650 29.630 20.87 0.00 31.06 1.40
88 89 9.612620 GCTTCCGGATGAATAGTAAATTTTATG 57.387 33.333 20.87 0.00 31.06 1.90
117 118 8.999220 ATAGTAAAGTAGTCTAACAAAGGTGC 57.001 34.615 0.00 0.00 0.00 5.01
118 119 7.063934 AGTAAAGTAGTCTAACAAAGGTGCT 57.936 36.000 0.00 0.00 0.00 4.40
119 120 7.506971 AGTAAAGTAGTCTAACAAAGGTGCTT 58.493 34.615 0.00 0.00 0.00 3.91
120 121 6.619801 AAAGTAGTCTAACAAAGGTGCTTG 57.380 37.500 0.00 0.00 0.00 4.01
121 122 5.546621 AGTAGTCTAACAAAGGTGCTTGA 57.453 39.130 0.00 0.00 0.00 3.02
122 123 5.542779 AGTAGTCTAACAAAGGTGCTTGAG 58.457 41.667 0.00 0.00 0.00 3.02
123 124 4.689612 AGTCTAACAAAGGTGCTTGAGA 57.310 40.909 0.00 0.00 0.00 3.27
124 125 5.036117 AGTCTAACAAAGGTGCTTGAGAA 57.964 39.130 0.00 0.00 0.00 2.87
125 126 5.625150 AGTCTAACAAAGGTGCTTGAGAAT 58.375 37.500 0.00 0.00 0.00 2.40
126 127 6.064717 AGTCTAACAAAGGTGCTTGAGAATT 58.935 36.000 0.00 0.00 0.00 2.17
127 128 6.547510 AGTCTAACAAAGGTGCTTGAGAATTT 59.452 34.615 0.00 0.00 0.00 1.82
128 129 7.068716 AGTCTAACAAAGGTGCTTGAGAATTTT 59.931 33.333 0.00 0.00 0.00 1.82
129 130 7.379797 GTCTAACAAAGGTGCTTGAGAATTTTC 59.620 37.037 0.00 0.00 0.00 2.29
130 131 5.596836 ACAAAGGTGCTTGAGAATTTTCA 57.403 34.783 0.00 0.00 0.00 2.69
131 132 6.165700 ACAAAGGTGCTTGAGAATTTTCAT 57.834 33.333 0.00 0.00 0.00 2.57
132 133 5.987347 ACAAAGGTGCTTGAGAATTTTCATG 59.013 36.000 0.00 3.70 0.00 3.07
133 134 5.796424 AAGGTGCTTGAGAATTTTCATGT 57.204 34.783 11.86 0.00 0.00 3.21
134 135 5.130292 AGGTGCTTGAGAATTTTCATGTG 57.870 39.130 11.86 3.00 0.00 3.21
135 136 4.021719 AGGTGCTTGAGAATTTTCATGTGG 60.022 41.667 11.86 1.07 0.00 4.17
136 137 4.022068 GGTGCTTGAGAATTTTCATGTGGA 60.022 41.667 11.86 0.80 0.00 4.02
137 138 5.509501 GGTGCTTGAGAATTTTCATGTGGAA 60.510 40.000 11.86 0.00 0.00 3.53
138 139 5.403466 GTGCTTGAGAATTTTCATGTGGAAC 59.597 40.000 11.86 4.57 34.56 3.62
139 140 4.618489 GCTTGAGAATTTTCATGTGGAACG 59.382 41.667 11.86 0.00 42.39 3.95
140 141 4.764679 TGAGAATTTTCATGTGGAACGG 57.235 40.909 0.00 0.00 42.39 4.44
141 142 4.393834 TGAGAATTTTCATGTGGAACGGA 58.606 39.130 0.00 0.00 42.39 4.69
142 143 4.824537 TGAGAATTTTCATGTGGAACGGAA 59.175 37.500 0.00 0.00 42.39 4.30
143 144 5.476599 TGAGAATTTTCATGTGGAACGGAAT 59.523 36.000 0.00 0.00 42.39 3.01
144 145 6.657117 TGAGAATTTTCATGTGGAACGGAATA 59.343 34.615 0.00 0.00 42.39 1.75
145 146 7.088589 AGAATTTTCATGTGGAACGGAATAG 57.911 36.000 0.00 0.00 42.39 1.73
146 147 4.695217 TTTTCATGTGGAACGGAATAGC 57.305 40.909 0.00 0.00 42.39 2.97
147 148 3.342377 TTCATGTGGAACGGAATAGCA 57.658 42.857 0.00 0.00 42.39 3.49
148 149 2.905075 TCATGTGGAACGGAATAGCAG 58.095 47.619 0.00 0.00 42.39 4.24
149 150 2.236146 TCATGTGGAACGGAATAGCAGT 59.764 45.455 0.00 0.00 42.39 4.40
150 151 2.093306 TGTGGAACGGAATAGCAGTG 57.907 50.000 0.00 0.00 42.39 3.66
151 152 0.727398 GTGGAACGGAATAGCAGTGC 59.273 55.000 7.13 7.13 0.00 4.40
152 153 0.613260 TGGAACGGAATAGCAGTGCT 59.387 50.000 23.44 23.44 43.41 4.40
153 154 1.003118 TGGAACGGAATAGCAGTGCTT 59.997 47.619 25.23 5.85 40.44 3.91
154 155 2.084546 GGAACGGAATAGCAGTGCTTT 58.915 47.619 25.23 13.33 40.44 3.51
155 156 2.159517 GGAACGGAATAGCAGTGCTTTG 60.160 50.000 25.23 11.16 40.44 2.77
156 157 2.185004 ACGGAATAGCAGTGCTTTGT 57.815 45.000 25.23 11.80 40.44 2.83
157 158 2.076863 ACGGAATAGCAGTGCTTTGTC 58.923 47.619 25.23 17.06 40.44 3.18
158 159 1.061131 CGGAATAGCAGTGCTTTGTCG 59.939 52.381 25.23 17.66 40.44 4.35
159 160 1.398390 GGAATAGCAGTGCTTTGTCGG 59.602 52.381 25.23 0.00 40.44 4.79
160 161 2.076863 GAATAGCAGTGCTTTGTCGGT 58.923 47.619 25.23 0.00 40.44 4.69
161 162 1.442769 ATAGCAGTGCTTTGTCGGTG 58.557 50.000 25.23 0.00 40.44 4.94
162 163 0.391228 TAGCAGTGCTTTGTCGGTGA 59.609 50.000 25.23 0.00 40.44 4.02
163 164 0.463654 AGCAGTGCTTTGTCGGTGAA 60.464 50.000 13.14 0.00 33.89 3.18
164 165 0.380378 GCAGTGCTTTGTCGGTGAAA 59.620 50.000 8.18 0.00 0.00 2.69
165 166 1.202245 GCAGTGCTTTGTCGGTGAAAA 60.202 47.619 8.18 0.00 0.00 2.29
166 167 2.733858 GCAGTGCTTTGTCGGTGAAAAA 60.734 45.455 8.18 0.00 0.00 1.94
167 168 2.851824 CAGTGCTTTGTCGGTGAAAAAC 59.148 45.455 0.00 0.00 0.00 2.43
168 169 2.159296 AGTGCTTTGTCGGTGAAAAACC 60.159 45.455 0.00 0.00 46.60 3.27
184 185 8.745464 GTGAAAAACCAAAACTTAGTGTAACA 57.255 30.769 0.00 0.00 41.43 2.41
185 186 9.361315 GTGAAAAACCAAAACTTAGTGTAACAT 57.639 29.630 0.00 0.00 41.43 2.71
186 187 9.575783 TGAAAAACCAAAACTTAGTGTAACATC 57.424 29.630 0.00 0.00 41.43 3.06
187 188 9.797556 GAAAAACCAAAACTTAGTGTAACATCT 57.202 29.630 0.00 0.00 41.43 2.90
188 189 9.581099 AAAAACCAAAACTTAGTGTAACATCTG 57.419 29.630 0.00 0.00 41.43 2.90
189 190 8.514330 AAACCAAAACTTAGTGTAACATCTGA 57.486 30.769 0.00 0.00 41.43 3.27
190 191 8.691661 AACCAAAACTTAGTGTAACATCTGAT 57.308 30.769 0.00 0.00 41.43 2.90
191 192 8.691661 ACCAAAACTTAGTGTAACATCTGATT 57.308 30.769 0.00 0.00 41.43 2.57
192 193 9.131791 ACCAAAACTTAGTGTAACATCTGATTT 57.868 29.630 0.00 0.00 41.43 2.17
193 194 9.398170 CCAAAACTTAGTGTAACATCTGATTTG 57.602 33.333 0.00 0.00 41.43 2.32
217 218 4.582701 TTTTTGCACAGATCGAAATGGT 57.417 36.364 0.00 0.00 0.00 3.55
218 219 4.582701 TTTTGCACAGATCGAAATGGTT 57.417 36.364 0.00 0.00 0.00 3.67
219 220 5.697473 TTTTGCACAGATCGAAATGGTTA 57.303 34.783 0.00 0.00 0.00 2.85
220 221 5.697473 TTTGCACAGATCGAAATGGTTAA 57.303 34.783 0.00 0.00 0.00 2.01
221 222 4.944962 TGCACAGATCGAAATGGTTAAG 57.055 40.909 0.00 0.00 0.00 1.85
222 223 3.126858 TGCACAGATCGAAATGGTTAAGC 59.873 43.478 0.00 0.00 0.00 3.09
223 224 3.375299 GCACAGATCGAAATGGTTAAGCT 59.625 43.478 6.19 0.00 0.00 3.74
224 225 4.142600 GCACAGATCGAAATGGTTAAGCTT 60.143 41.667 3.48 3.48 0.00 3.74
225 226 5.619981 GCACAGATCGAAATGGTTAAGCTTT 60.620 40.000 3.20 3.06 0.00 3.51
226 227 6.381801 CACAGATCGAAATGGTTAAGCTTTT 58.618 36.000 15.85 15.85 0.00 2.27
227 228 6.524586 CACAGATCGAAATGGTTAAGCTTTTC 59.475 38.462 24.98 24.98 0.00 2.29
228 229 6.030228 CAGATCGAAATGGTTAAGCTTTTCC 58.970 40.000 26.99 18.58 0.00 3.13
229 230 5.710099 AGATCGAAATGGTTAAGCTTTTCCA 59.290 36.000 26.99 20.53 0.00 3.53
230 231 5.116069 TCGAAATGGTTAAGCTTTTCCAC 57.884 39.130 26.99 13.19 32.60 4.02
231 232 4.825085 TCGAAATGGTTAAGCTTTTCCACT 59.175 37.500 26.99 10.14 32.60 4.00
232 233 5.998981 TCGAAATGGTTAAGCTTTTCCACTA 59.001 36.000 26.99 15.05 32.60 2.74
233 234 6.148811 TCGAAATGGTTAAGCTTTTCCACTAG 59.851 38.462 26.99 18.19 32.60 2.57
234 235 6.148811 CGAAATGGTTAAGCTTTTCCACTAGA 59.851 38.462 26.99 2.87 32.60 2.43
235 236 7.308348 CGAAATGGTTAAGCTTTTCCACTAGAA 60.308 37.037 26.99 0.00 32.60 2.10
236 237 7.833285 AATGGTTAAGCTTTTCCACTAGAAA 57.167 32.000 19.67 0.00 42.82 2.52
237 238 8.422577 AATGGTTAAGCTTTTCCACTAGAAAT 57.577 30.769 19.67 4.76 43.93 2.17
238 239 7.833285 TGGTTAAGCTTTTCCACTAGAAATT 57.167 32.000 3.20 0.00 43.93 1.82
239 240 8.245195 TGGTTAAGCTTTTCCACTAGAAATTT 57.755 30.769 3.20 0.00 43.93 1.82
240 241 9.357161 TGGTTAAGCTTTTCCACTAGAAATTTA 57.643 29.630 3.20 0.00 43.93 1.40
241 242 9.622004 GGTTAAGCTTTTCCACTAGAAATTTAC 57.378 33.333 3.20 0.00 43.93 2.01
244 245 7.454260 AGCTTTTCCACTAGAAATTTACAGG 57.546 36.000 0.00 0.00 43.93 4.00
245 246 7.004691 AGCTTTTCCACTAGAAATTTACAGGT 58.995 34.615 0.00 0.00 43.93 4.00
246 247 8.161425 AGCTTTTCCACTAGAAATTTACAGGTA 58.839 33.333 0.00 0.00 43.93 3.08
247 248 8.957466 GCTTTTCCACTAGAAATTTACAGGTAT 58.043 33.333 0.00 0.00 43.93 2.73
255 256 9.408648 ACTAGAAATTTACAGGTATCATTTGGG 57.591 33.333 0.00 0.00 0.00 4.12
256 257 9.408648 CTAGAAATTTACAGGTATCATTTGGGT 57.591 33.333 0.00 0.00 0.00 4.51
257 258 8.066612 AGAAATTTACAGGTATCATTTGGGTG 57.933 34.615 0.00 0.00 0.00 4.61
258 259 7.673926 AGAAATTTACAGGTATCATTTGGGTGT 59.326 33.333 0.00 0.00 0.00 4.16
259 260 6.773976 ATTTACAGGTATCATTTGGGTGTG 57.226 37.500 0.00 0.00 0.00 3.82
260 261 5.506730 TTACAGGTATCATTTGGGTGTGA 57.493 39.130 0.00 0.00 0.00 3.58
261 262 3.686016 ACAGGTATCATTTGGGTGTGAC 58.314 45.455 0.00 0.00 0.00 3.67
262 263 3.073798 ACAGGTATCATTTGGGTGTGACA 59.926 43.478 0.00 0.00 0.00 3.58
263 264 4.078537 CAGGTATCATTTGGGTGTGACAA 58.921 43.478 0.00 0.00 0.00 3.18
264 265 4.706476 CAGGTATCATTTGGGTGTGACAAT 59.294 41.667 0.00 0.00 0.00 2.71
265 266 4.706476 AGGTATCATTTGGGTGTGACAATG 59.294 41.667 0.00 0.00 0.00 2.82
266 267 4.704540 GGTATCATTTGGGTGTGACAATGA 59.295 41.667 0.00 0.00 0.00 2.57
267 268 5.184864 GGTATCATTTGGGTGTGACAATGAA 59.815 40.000 1.53 0.00 0.00 2.57
268 269 4.582701 TCATTTGGGTGTGACAATGAAC 57.417 40.909 0.00 0.00 0.00 3.18
269 270 3.956848 TCATTTGGGTGTGACAATGAACA 59.043 39.130 0.00 0.00 0.00 3.18
270 271 4.403752 TCATTTGGGTGTGACAATGAACAA 59.596 37.500 0.00 0.00 0.00 2.83
271 272 4.808414 TTTGGGTGTGACAATGAACAAA 57.192 36.364 0.00 0.00 0.00 2.83
272 273 5.350504 TTTGGGTGTGACAATGAACAAAT 57.649 34.783 0.00 0.00 0.00 2.32
273 274 4.582701 TGGGTGTGACAATGAACAAATC 57.417 40.909 0.00 0.00 0.00 2.17
274 275 4.214310 TGGGTGTGACAATGAACAAATCT 58.786 39.130 0.00 0.00 0.00 2.40
275 276 5.380900 TGGGTGTGACAATGAACAAATCTA 58.619 37.500 0.00 0.00 0.00 1.98
276 277 5.473162 TGGGTGTGACAATGAACAAATCTAG 59.527 40.000 0.00 0.00 0.00 2.43
277 278 5.473504 GGGTGTGACAATGAACAAATCTAGT 59.526 40.000 0.00 0.00 0.00 2.57
278 279 6.016276 GGGTGTGACAATGAACAAATCTAGTT 60.016 38.462 0.00 0.00 0.00 2.24
279 280 7.425606 GGTGTGACAATGAACAAATCTAGTTT 58.574 34.615 0.00 0.00 0.00 2.66
280 281 7.920682 GGTGTGACAATGAACAAATCTAGTTTT 59.079 33.333 0.00 0.00 0.00 2.43
281 282 9.301153 GTGTGACAATGAACAAATCTAGTTTTT 57.699 29.630 0.00 0.00 0.00 1.94
282 283 9.515020 TGTGACAATGAACAAATCTAGTTTTTC 57.485 29.630 0.00 0.00 0.00 2.29
283 284 9.736023 GTGACAATGAACAAATCTAGTTTTTCT 57.264 29.630 0.00 0.00 0.00 2.52
316 317 9.991388 ACTTGAACATTTGTGAAATCATTTTTG 57.009 25.926 0.00 0.00 0.00 2.44
319 320 8.828644 TGAACATTTGTGAAATCATTTTTGAGG 58.171 29.630 0.00 0.00 0.00 3.86
320 321 8.961294 AACATTTGTGAAATCATTTTTGAGGA 57.039 26.923 0.00 0.00 0.00 3.71
321 322 8.597662 ACATTTGTGAAATCATTTTTGAGGAG 57.402 30.769 0.00 0.00 0.00 3.69
322 323 7.172019 ACATTTGTGAAATCATTTTTGAGGAGC 59.828 33.333 0.00 0.00 0.00 4.70
323 324 5.787953 TGTGAAATCATTTTTGAGGAGCA 57.212 34.783 0.00 0.00 0.00 4.26
324 325 5.775686 TGTGAAATCATTTTTGAGGAGCAG 58.224 37.500 0.00 0.00 0.00 4.24
325 326 5.166398 GTGAAATCATTTTTGAGGAGCAGG 58.834 41.667 0.00 0.00 0.00 4.85
326 327 5.047802 GTGAAATCATTTTTGAGGAGCAGGA 60.048 40.000 0.00 0.00 0.00 3.86
327 328 5.184479 TGAAATCATTTTTGAGGAGCAGGAG 59.816 40.000 0.00 0.00 0.00 3.69
328 329 2.440409 TCATTTTTGAGGAGCAGGAGC 58.560 47.619 0.00 0.00 42.56 4.70
329 330 2.165167 CATTTTTGAGGAGCAGGAGCA 58.835 47.619 0.00 0.00 45.49 4.26
330 331 2.592102 TTTTTGAGGAGCAGGAGCAT 57.408 45.000 0.00 0.00 45.49 3.79
331 332 3.719268 TTTTTGAGGAGCAGGAGCATA 57.281 42.857 0.00 0.00 45.49 3.14
332 333 3.939740 TTTTGAGGAGCAGGAGCATAT 57.060 42.857 0.00 0.00 45.49 1.78
333 334 2.924757 TTGAGGAGCAGGAGCATATG 57.075 50.000 0.00 0.00 45.49 1.78
334 335 0.395686 TGAGGAGCAGGAGCATATGC 59.604 55.000 20.36 20.36 45.49 3.14
345 346 2.245892 GCATATGCTCAGGCTCAGC 58.754 57.895 20.64 2.31 39.59 4.26
346 347 1.235948 GCATATGCTCAGGCTCAGCC 61.236 60.000 20.64 8.01 43.17 4.85
357 358 3.686760 CTCAGCCGTGAGTCCTGA 58.313 61.111 0.00 0.00 44.72 3.86
358 359 1.967535 CTCAGCCGTGAGTCCTGAA 59.032 57.895 0.00 0.00 44.72 3.02
359 360 0.534412 CTCAGCCGTGAGTCCTGAAT 59.466 55.000 0.00 0.00 44.72 2.57
360 361 0.247460 TCAGCCGTGAGTCCTGAATG 59.753 55.000 0.00 0.00 35.52 2.67
361 362 0.036952 CAGCCGTGAGTCCTGAATGT 60.037 55.000 0.00 0.00 32.35 2.71
362 363 0.247736 AGCCGTGAGTCCTGAATGTC 59.752 55.000 0.00 0.00 0.00 3.06
363 364 1.078759 GCCGTGAGTCCTGAATGTCG 61.079 60.000 0.00 0.00 0.00 4.35
364 365 0.458543 CCGTGAGTCCTGAATGTCGG 60.459 60.000 0.00 0.00 0.00 4.79
365 366 0.458543 CGTGAGTCCTGAATGTCGGG 60.459 60.000 0.00 0.00 44.41 5.14
366 367 0.741221 GTGAGTCCTGAATGTCGGGC 60.741 60.000 0.00 0.00 42.73 6.13
367 368 1.519455 GAGTCCTGAATGTCGGGCG 60.519 63.158 0.00 0.00 42.73 6.13
368 369 1.945354 GAGTCCTGAATGTCGGGCGA 61.945 60.000 0.00 0.00 42.73 5.54
369 370 1.079405 GTCCTGAATGTCGGGCGAA 60.079 57.895 0.00 0.00 42.73 4.70
370 371 1.084370 GTCCTGAATGTCGGGCGAAG 61.084 60.000 0.00 0.00 42.73 3.79
371 372 1.815421 CCTGAATGTCGGGCGAAGG 60.815 63.158 0.00 0.00 35.89 3.46
372 373 1.079127 CTGAATGTCGGGCGAAGGT 60.079 57.895 0.00 0.00 0.00 3.50
373 374 1.361668 CTGAATGTCGGGCGAAGGTG 61.362 60.000 0.00 0.00 0.00 4.00
374 375 2.746277 AATGTCGGGCGAAGGTGC 60.746 61.111 0.00 0.00 0.00 5.01
396 397 4.451150 CCAGCCGAAGCGCCACTA 62.451 66.667 2.29 0.00 46.67 2.74
397 398 3.188786 CAGCCGAAGCGCCACTAC 61.189 66.667 2.29 0.00 46.67 2.73
400 401 2.509336 CCGAAGCGCCACTACTGG 60.509 66.667 2.29 0.00 41.13 4.00
424 425 3.792736 GCGGAGGCATGGTGGGTA 61.793 66.667 0.00 0.00 39.62 3.69
428 429 2.696125 AGGCATGGTGGGTAGGGG 60.696 66.667 0.00 0.00 0.00 4.79
430 431 4.875713 GCATGGTGGGTAGGGGCG 62.876 72.222 0.00 0.00 0.00 6.13
438 439 2.122989 GGTAGGGGCGATGGAGGA 60.123 66.667 0.00 0.00 0.00 3.71
445 446 1.389609 GGGCGATGGAGGACGTTAGA 61.390 60.000 0.00 0.00 0.00 2.10
450 451 3.372954 CGATGGAGGACGTTAGATTGTC 58.627 50.000 0.00 0.00 0.00 3.18
451 452 3.181490 CGATGGAGGACGTTAGATTGTCA 60.181 47.826 0.00 0.00 36.83 3.58
474 475 3.587498 TCTGGTATTTCCGGATCAGGAT 58.413 45.455 15.77 4.34 45.77 3.24
479 480 1.500474 TTTCCGGATCAGGATGCTCT 58.500 50.000 15.77 0.00 40.48 4.09
480 481 1.043816 TTCCGGATCAGGATGCTCTC 58.956 55.000 15.77 0.00 40.48 3.20
508 509 1.729517 CATCGTGTGTTTCATGGCGTA 59.270 47.619 0.00 0.00 34.14 4.42
509 510 1.867166 TCGTGTGTTTCATGGCGTAA 58.133 45.000 0.00 0.00 34.14 3.18
548 549 9.773328 CAATGTAAATATATATTGTTGCGAGGG 57.227 33.333 8.74 0.00 36.44 4.30
550 551 8.317891 TGTAAATATATATTGTTGCGAGGGTG 57.682 34.615 8.74 0.00 0.00 4.61
552 553 2.700722 TATATTGTTGCGAGGGTGCA 57.299 45.000 0.00 0.00 44.61 4.57
553 554 2.057137 ATATTGTTGCGAGGGTGCAT 57.943 45.000 0.00 0.00 45.78 3.96
564 565 3.625764 GCGAGGGTGCATAATGAGTTTTA 59.374 43.478 0.00 0.00 34.15 1.52
604 605 7.548196 TTAGATTAGTTTGGATTGCTTACCG 57.452 36.000 0.00 0.00 0.00 4.02
617 618 3.004171 TGCTTACCGCATATTTCACGTT 58.996 40.909 0.00 0.00 45.47 3.99
618 619 4.182339 TGCTTACCGCATATTTCACGTTA 58.818 39.130 0.00 0.00 45.47 3.18
620 621 5.984323 TGCTTACCGCATATTTCACGTTATA 59.016 36.000 0.00 0.00 45.47 0.98
621 622 6.479331 TGCTTACCGCATATTTCACGTTATAA 59.521 34.615 0.00 0.00 45.47 0.98
625 626 7.117241 ACCGCATATTTCACGTTATAATCTG 57.883 36.000 0.00 0.00 0.00 2.90
627 628 7.602644 ACCGCATATTTCACGTTATAATCTGAT 59.397 33.333 0.00 0.00 0.00 2.90
628 629 7.899841 CCGCATATTTCACGTTATAATCTGATG 59.100 37.037 0.00 0.00 0.00 3.07
629 630 7.899841 CGCATATTTCACGTTATAATCTGATGG 59.100 37.037 0.00 0.00 0.00 3.51
630 631 8.721478 GCATATTTCACGTTATAATCTGATGGT 58.279 33.333 0.00 0.00 0.00 3.55
633 634 8.731275 ATTTCACGTTATAATCTGATGGTTCA 57.269 30.769 0.00 0.00 0.00 3.18
635 636 6.046593 TCACGTTATAATCTGATGGTTCACC 58.953 40.000 0.00 0.00 0.00 4.02
637 638 6.201044 CACGTTATAATCTGATGGTTCACCTC 59.799 42.308 0.00 0.00 36.82 3.85
638 639 6.127168 ACGTTATAATCTGATGGTTCACCTCA 60.127 38.462 0.00 0.00 36.82 3.86
641 642 4.581309 AATCTGATGGTTCACCTCACAT 57.419 40.909 0.00 0.00 36.82 3.21
642 643 4.581309 ATCTGATGGTTCACCTCACATT 57.419 40.909 0.00 0.00 36.82 2.71
643 644 3.942829 TCTGATGGTTCACCTCACATTC 58.057 45.455 0.00 0.00 36.82 2.67
645 646 3.678289 TGATGGTTCACCTCACATTCTG 58.322 45.455 0.00 0.00 36.82 3.02
646 647 2.566833 TGGTTCACCTCACATTCTGG 57.433 50.000 0.00 0.00 36.82 3.86
651 652 2.276732 CACCTCACATTCTGGTGGTT 57.723 50.000 0.00 0.00 45.29 3.67
654 655 2.376518 ACCTCACATTCTGGTGGTTCAT 59.623 45.455 0.00 0.00 39.27 2.57
655 656 2.751259 CCTCACATTCTGGTGGTTCATG 59.249 50.000 0.00 0.00 39.27 3.07
656 657 2.161855 TCACATTCTGGTGGTTCATGC 58.838 47.619 0.00 0.00 39.27 4.06
657 658 1.887854 CACATTCTGGTGGTTCATGCA 59.112 47.619 0.00 0.00 35.13 3.96
671 672 3.021177 TCATGCAACCACCATGATCAT 57.979 42.857 1.18 1.18 42.88 2.45
672 673 2.691011 TCATGCAACCACCATGATCATG 59.309 45.455 25.97 25.97 42.88 3.07
673 674 2.219080 TGCAACCACCATGATCATGT 57.781 45.000 29.23 17.14 37.11 3.21
674 675 1.819903 TGCAACCACCATGATCATGTG 59.180 47.619 29.23 24.91 37.11 3.21
675 676 1.820519 GCAACCACCATGATCATGTGT 59.179 47.619 29.23 23.49 37.11 3.72
676 677 3.016031 GCAACCACCATGATCATGTGTA 58.984 45.455 29.23 0.00 37.11 2.90
677 678 3.065786 GCAACCACCATGATCATGTGTAG 59.934 47.826 29.23 21.65 37.11 2.74
678 679 4.516323 CAACCACCATGATCATGTGTAGA 58.484 43.478 29.23 0.00 37.11 2.59
679 680 4.842531 ACCACCATGATCATGTGTAGAA 57.157 40.909 29.23 0.00 37.11 2.10
680 681 4.517285 ACCACCATGATCATGTGTAGAAC 58.483 43.478 29.23 0.00 37.11 3.01
682 683 5.425217 ACCACCATGATCATGTGTAGAACTA 59.575 40.000 29.23 0.00 37.11 2.24
685 2298 4.993584 CCATGATCATGTGTAGAACTAGGC 59.006 45.833 29.23 0.00 37.11 3.93
689 2302 5.891551 TGATCATGTGTAGAACTAGGCTGTA 59.108 40.000 0.00 0.00 0.00 2.74
701 2314 1.938585 AGGCTGTAGACTAGTGGCAA 58.061 50.000 0.00 0.00 0.00 4.52
703 2316 2.234908 AGGCTGTAGACTAGTGGCAAAG 59.765 50.000 0.00 0.00 0.00 2.77
705 2318 2.678190 GCTGTAGACTAGTGGCAAAGGG 60.678 54.545 0.00 0.00 0.00 3.95
706 2319 2.567615 CTGTAGACTAGTGGCAAAGGGT 59.432 50.000 0.00 0.00 0.00 4.34
707 2320 2.565834 TGTAGACTAGTGGCAAAGGGTC 59.434 50.000 0.00 0.00 0.00 4.46
708 2321 1.729586 AGACTAGTGGCAAAGGGTCA 58.270 50.000 0.00 0.00 0.00 4.02
714 2327 2.744062 TGGCAAAGGGTCACAATGG 58.256 52.632 0.00 0.00 0.00 3.16
717 2330 0.319813 GCAAAGGGTCACAATGGTGC 60.320 55.000 0.00 0.00 44.87 5.01
718 2331 1.039068 CAAAGGGTCACAATGGTGCA 58.961 50.000 0.00 0.00 44.87 4.57
719 2332 1.039856 AAAGGGTCACAATGGTGCAC 58.960 50.000 8.80 8.80 44.87 4.57
720 2333 0.827507 AAGGGTCACAATGGTGCACC 60.828 55.000 29.67 29.67 44.87 5.01
721 2334 3.365535 GGTCACAATGGTGCACCC 58.634 61.111 32.62 15.11 44.87 4.61
733 2346 3.461773 GCACCCAGCGGCTAGAGA 61.462 66.667 0.26 0.00 0.00 3.10
738 2351 0.246086 CCCAGCGGCTAGAGATGATC 59.754 60.000 0.26 0.00 0.00 2.92
739 2352 0.246086 CCAGCGGCTAGAGATGATCC 59.754 60.000 0.26 0.00 0.00 3.36
740 2353 0.246086 CAGCGGCTAGAGATGATCCC 59.754 60.000 0.26 0.00 0.00 3.85
741 2354 1.214062 GCGGCTAGAGATGATCCCG 59.786 63.158 0.00 3.21 38.76 5.14
742 2355 1.528292 GCGGCTAGAGATGATCCCGT 61.528 60.000 8.46 0.00 38.08 5.28
743 2356 0.523966 CGGCTAGAGATGATCCCGTC 59.476 60.000 0.00 0.00 0.00 4.79
744 2357 0.523966 GGCTAGAGATGATCCCGTCG 59.476 60.000 0.00 0.00 33.59 5.12
745 2358 1.524848 GCTAGAGATGATCCCGTCGA 58.475 55.000 0.00 0.00 33.59 4.20
746 2359 1.466950 GCTAGAGATGATCCCGTCGAG 59.533 57.143 0.00 0.00 33.59 4.04
747 2360 2.872440 GCTAGAGATGATCCCGTCGAGA 60.872 54.545 0.00 0.00 33.59 4.04
748 2361 1.890876 AGAGATGATCCCGTCGAGAG 58.109 55.000 0.00 0.00 33.59 3.20
749 2362 0.239879 GAGATGATCCCGTCGAGAGC 59.760 60.000 0.00 0.00 33.59 4.09
750 2363 1.081774 GATGATCCCGTCGAGAGCG 60.082 63.158 0.00 0.00 39.35 5.03
751 2364 1.507974 GATGATCCCGTCGAGAGCGA 61.508 60.000 0.00 0.00 45.71 4.93
763 2376 4.030134 TCGAGAGCGAATTTCTAGTTCC 57.970 45.455 0.00 0.00 44.78 3.62
764 2377 3.695060 TCGAGAGCGAATTTCTAGTTCCT 59.305 43.478 0.00 0.00 44.78 3.36
767 2380 5.596845 GAGAGCGAATTTCTAGTTCCTCAT 58.403 41.667 0.00 1.34 31.25 2.90
768 2381 5.596845 AGAGCGAATTTCTAGTTCCTCATC 58.403 41.667 0.00 0.00 31.25 2.92
769 2382 4.698575 AGCGAATTTCTAGTTCCTCATCC 58.301 43.478 0.00 0.00 0.00 3.51
771 2384 4.051922 CGAATTTCTAGTTCCTCATCCGG 58.948 47.826 0.00 0.00 0.00 5.14
772 2385 4.381411 GAATTTCTAGTTCCTCATCCGGG 58.619 47.826 0.00 0.00 0.00 5.73
773 2386 2.544844 TTCTAGTTCCTCATCCGGGT 57.455 50.000 0.00 0.00 0.00 5.28
774 2387 2.544844 TCTAGTTCCTCATCCGGGTT 57.455 50.000 0.00 0.00 0.00 4.11
775 2388 2.108168 TCTAGTTCCTCATCCGGGTTG 58.892 52.381 0.00 0.00 0.00 3.77
776 2389 1.139058 CTAGTTCCTCATCCGGGTTGG 59.861 57.143 0.00 0.00 40.09 3.77
777 2390 1.749258 GTTCCTCATCCGGGTTGGC 60.749 63.158 0.00 0.00 37.80 4.52
778 2391 1.923395 TTCCTCATCCGGGTTGGCT 60.923 57.895 0.00 0.00 37.80 4.75
779 2392 1.497309 TTCCTCATCCGGGTTGGCTT 61.497 55.000 0.00 0.00 37.80 4.35
782 2395 0.035056 CTCATCCGGGTTGGCTTCTT 60.035 55.000 0.00 0.00 37.80 2.52
784 2397 0.035056 CATCCGGGTTGGCTTCTTCT 60.035 55.000 0.00 0.00 37.80 2.85
785 2398 1.209504 CATCCGGGTTGGCTTCTTCTA 59.790 52.381 0.00 0.00 37.80 2.10
787 2400 1.913419 TCCGGGTTGGCTTCTTCTAAT 59.087 47.619 0.00 0.00 37.80 1.73
788 2401 3.109151 TCCGGGTTGGCTTCTTCTAATA 58.891 45.455 0.00 0.00 37.80 0.98
789 2402 3.520317 TCCGGGTTGGCTTCTTCTAATAA 59.480 43.478 0.00 0.00 37.80 1.40
790 2403 3.626217 CCGGGTTGGCTTCTTCTAATAAC 59.374 47.826 0.00 0.00 0.00 1.89
792 2405 3.064958 GGGTTGGCTTCTTCTAATAACGC 59.935 47.826 0.00 0.00 0.00 4.84
803 3733 6.037098 TCTTCTAATAACGCTCAGCTCTTTC 58.963 40.000 0.00 0.00 0.00 2.62
816 3746 5.185454 TCAGCTCTTTCAACAGTCAAAAGA 58.815 37.500 9.05 9.05 36.84 2.52
826 3756 6.394809 TCAACAGTCAAAAGAAAAGGGAAAC 58.605 36.000 0.00 0.00 0.00 2.78
828 3758 5.720202 ACAGTCAAAAGAAAAGGGAAACAC 58.280 37.500 0.00 0.00 0.00 3.32
839 3769 2.644992 GAAACACCCAAGGCTGCG 59.355 61.111 0.00 0.00 0.00 5.18
840 3770 3.558099 GAAACACCCAAGGCTGCGC 62.558 63.158 0.00 0.00 0.00 6.09
893 3833 0.817654 GTTTTGGGGTATGCTCTGCC 59.182 55.000 0.00 0.00 0.00 4.85
896 3836 4.256180 GGGGTATGCTCTGCCGGG 62.256 72.222 2.18 0.00 0.00 5.73
979 3937 1.136252 CATCTAACACACACGCTGCAC 60.136 52.381 0.00 0.00 0.00 4.57
1040 4008 1.371758 GCAAGAGCGTGACGAGTGA 60.372 57.895 10.10 0.00 0.00 3.41
1041 4009 1.340657 GCAAGAGCGTGACGAGTGAG 61.341 60.000 10.10 0.00 0.00 3.51
1042 4010 1.081108 AAGAGCGTGACGAGTGAGC 60.081 57.895 10.10 0.00 0.00 4.26
1074 4042 4.821589 CCGGAGTGCGAGGAAGGC 62.822 72.222 5.27 0.00 0.00 4.35
1233 4222 3.003480 CGTCTTCAAGGTGATTTCTCCC 58.997 50.000 0.00 0.00 0.00 4.30
1251 4240 1.290732 CCCCTCCTCTCCTCTTCTCTT 59.709 57.143 0.00 0.00 0.00 2.85
1274 4263 4.778579 ACCAGAGAGTCATCCAATGATTG 58.221 43.478 0.00 0.00 42.04 2.67
1376 4371 4.142227 GCCGTGAGAGGATTTCTTAGTGTA 60.142 45.833 0.00 0.00 35.87 2.90
1412 4407 8.298729 AGAAATTCTTCATGTTTTCCCTATCC 57.701 34.615 0.00 0.00 33.64 2.59
1416 4411 6.642733 TCTTCATGTTTTCCCTATCCTCTT 57.357 37.500 0.00 0.00 0.00 2.85
1432 4428 3.949754 TCCTCTTGCAAGCAGAATTATGG 59.050 43.478 21.99 11.02 0.00 2.74
1433 4429 3.067742 CCTCTTGCAAGCAGAATTATGGG 59.932 47.826 21.99 6.53 0.00 4.00
1441 4437 5.163478 GCAAGCAGAATTATGGGAGTTGAAT 60.163 40.000 1.67 0.00 0.00 2.57
1444 4440 7.486407 AGCAGAATTATGGGAGTTGAATTTT 57.514 32.000 1.67 0.00 0.00 1.82
1480 4540 4.013050 CAGAAAACCCTCTTTCCATCTCC 58.987 47.826 0.00 0.00 36.18 3.71
1481 4541 3.919554 AGAAAACCCTCTTTCCATCTCCT 59.080 43.478 0.00 0.00 36.18 3.69
1482 4542 4.018870 AGAAAACCCTCTTTCCATCTCCTC 60.019 45.833 0.00 0.00 36.18 3.71
1483 4543 2.959421 ACCCTCTTTCCATCTCCTCT 57.041 50.000 0.00 0.00 0.00 3.69
2235 5553 1.522580 GCTCAGCCTCCGGATTGAC 60.523 63.158 3.57 0.00 0.00 3.18
2316 5658 0.102120 CGAGGAGGATGCAGTGACTC 59.898 60.000 0.00 0.00 0.00 3.36
2318 5660 1.761784 GAGGAGGATGCAGTGACTCAT 59.238 52.381 0.00 4.81 0.00 2.90
2417 5802 4.070009 TGCAGCTCAGCTATGGATTATTG 58.930 43.478 0.00 0.00 36.40 1.90
2427 5812 7.016563 TCAGCTATGGATTATTGGTATGAGTGT 59.983 37.037 0.00 0.00 0.00 3.55
2428 5813 8.314021 CAGCTATGGATTATTGGTATGAGTGTA 58.686 37.037 0.00 0.00 0.00 2.90
2429 5814 9.051259 AGCTATGGATTATTGGTATGAGTGTAT 57.949 33.333 0.00 0.00 0.00 2.29
2430 5815 9.102757 GCTATGGATTATTGGTATGAGTGTATG 57.897 37.037 0.00 0.00 0.00 2.39
2433 5818 8.491045 TGGATTATTGGTATGAGTGTATGAGA 57.509 34.615 0.00 0.00 0.00 3.27
2434 5819 8.367911 TGGATTATTGGTATGAGTGTATGAGAC 58.632 37.037 0.00 0.00 0.00 3.36
2435 5820 8.589338 GGATTATTGGTATGAGTGTATGAGACT 58.411 37.037 0.00 0.00 0.00 3.24
2439 5824 8.712228 ATTGGTATGAGTGTATGAGACTATGA 57.288 34.615 0.00 0.00 0.00 2.15
2440 5825 8.533569 TTGGTATGAGTGTATGAGACTATGAA 57.466 34.615 0.00 0.00 0.00 2.57
2441 5826 8.533569 TGGTATGAGTGTATGAGACTATGAAA 57.466 34.615 0.00 0.00 0.00 2.69
2442 5827 9.147732 TGGTATGAGTGTATGAGACTATGAAAT 57.852 33.333 0.00 0.00 0.00 2.17
2492 5877 6.142818 AGCTACATGACTTCTGATCAGTAC 57.857 41.667 21.92 12.03 0.00 2.73
2505 5890 4.191544 TGATCAGTACCAATGCAGCTAAC 58.808 43.478 0.00 0.00 0.00 2.34
2516 9608 4.760530 ATGCAGCTAACAAGTGAGGATA 57.239 40.909 0.00 0.00 0.00 2.59
2534 9626 5.316167 AGGATATGCTGTGTGAAAGTTTCA 58.684 37.500 14.35 14.35 37.33 2.69
2586 10277 1.207593 GCGTGCACCACAAAGCTAG 59.792 57.895 12.15 0.00 33.40 3.42
2590 10281 1.681264 GTGCACCACAAAGCTAGGTTT 59.319 47.619 14.07 14.07 34.08 3.27
2609 10300 7.997107 AGGTTTCTTTTTAACGATGGAAAAC 57.003 32.000 0.00 0.00 32.58 2.43
2625 10316 3.348119 GAAAACCCACTTCATCTCCTCC 58.652 50.000 0.00 0.00 0.00 4.30
2631 10322 2.234908 CCACTTCATCTCCTCCGTTCTT 59.765 50.000 0.00 0.00 0.00 2.52
2645 10336 1.323534 CGTTCTTATTTGGAGGCGTCG 59.676 52.381 0.00 0.00 0.00 5.12
2655 10346 1.588082 GAGGCGTCGGTGAGGTTAA 59.412 57.895 0.00 0.00 0.00 2.01
2662 10353 3.846360 CGTCGGTGAGGTTAAATTCTCT 58.154 45.455 0.00 0.00 0.00 3.10
2712 10533 1.006043 TGGGTTTGACCAGGTTTGACA 59.994 47.619 0.00 0.00 41.02 3.58
2713 10534 1.407618 GGGTTTGACCAGGTTTGACAC 59.592 52.381 0.00 0.00 41.02 3.67
2721 10542 3.360867 ACCAGGTTTGACACATGAACAA 58.639 40.909 0.00 0.00 39.73 2.83
2782 10609 1.133513 TGACAACCAAGATGCTTGGGT 60.134 47.619 25.15 18.91 43.71 4.51
2794 10621 1.302511 CTTGGGTTGCGCTAGGTGT 60.303 57.895 9.73 0.00 0.00 4.16
2822 10649 9.781834 TGAAAATTTATGTGGTATTTCGACATC 57.218 29.630 0.00 0.00 42.77 3.06
2833 10660 1.824329 TCGACATCCGAGGAGCTCC 60.824 63.158 26.22 26.22 43.23 4.70
2934 10774 3.131400 ACCACAAAAATTTACACGCACCT 59.869 39.130 0.00 0.00 0.00 4.00
2935 10775 4.338682 ACCACAAAAATTTACACGCACCTA 59.661 37.500 0.00 0.00 0.00 3.08
2936 10776 4.915085 CCACAAAAATTTACACGCACCTAG 59.085 41.667 0.00 0.00 0.00 3.02
2937 10777 4.381566 CACAAAAATTTACACGCACCTAGC 59.618 41.667 0.00 0.00 40.87 3.42
2966 10806 2.033299 AGCATGTTGGTTGTCACGAAAG 59.967 45.455 0.00 0.00 0.00 2.62
2972 10812 2.980568 TGGTTGTCACGAAAGTTCAGT 58.019 42.857 0.00 0.00 46.40 3.41
2977 10817 5.285370 GGTTGTCACGAAAGTTCAGTTTTTC 59.715 40.000 0.00 0.00 46.40 2.29
3019 10864 4.862574 TCTGAATTTACTGTTCATCGGTCG 59.137 41.667 0.00 0.00 35.26 4.79
3032 10878 1.666872 CGGTCGAACCTGGTCAACC 60.667 63.158 0.00 7.45 35.66 3.77
3033 10879 1.448497 GGTCGAACCTGGTCAACCA 59.552 57.895 16.19 1.20 45.30 3.67
3054 10910 1.606668 GGTCAACGTGCTCAAAATCCA 59.393 47.619 0.00 0.00 0.00 3.41
3060 10916 5.066634 TCAACGTGCTCAAAATCCAGTTTTA 59.933 36.000 0.00 0.00 37.93 1.52
3062 10918 4.023193 ACGTGCTCAAAATCCAGTTTTAGG 60.023 41.667 0.00 0.00 37.93 2.69
3100 10957 7.468084 CGGTTTTGAGACTTGAAAGACCAAATA 60.468 37.037 0.00 0.00 0.00 1.40
3107 10964 9.274206 GAGACTTGAAAGACCAAATATATACCC 57.726 37.037 0.00 0.00 0.00 3.69
3134 10991 6.749036 AAATTCGAGGGACCAAGTCTATAT 57.251 37.500 0.00 0.00 32.47 0.86
3149 11006 7.178451 CCAAGTCTATATTTTTGGGGAACTTGT 59.822 37.037 9.69 0.00 37.11 3.16
3151 11008 7.466804 AGTCTATATTTTTGGGGAACTTGTGA 58.533 34.615 0.00 0.00 0.00 3.58
3152 11009 8.116026 AGTCTATATTTTTGGGGAACTTGTGAT 58.884 33.333 0.00 0.00 0.00 3.06
3200 11057 8.709386 AAATCAAGTATGTACAAGCTCTACTG 57.291 34.615 0.00 0.00 0.00 2.74
3201 11058 5.651530 TCAAGTATGTACAAGCTCTACTGC 58.348 41.667 0.00 0.00 0.00 4.40
3226 11083 7.284489 GCCCATAACATATTAAACTGAACTCCA 59.716 37.037 0.00 0.00 0.00 3.86
3244 14421 8.082852 TGAACTCCATAATCTTAAGAGATACGC 58.917 37.037 11.53 0.00 41.78 4.42
3248 14425 8.178313 TCCATAATCTTAAGAGATACGCAAGA 57.822 34.615 11.53 0.00 41.78 3.02
3253 14430 5.651530 TCTTAAGAGATACGCAAGAAGGTG 58.348 41.667 0.00 0.00 43.62 4.00
3254 14431 3.963428 AAGAGATACGCAAGAAGGTGT 57.037 42.857 0.00 0.00 43.62 4.16
3261 14438 1.013596 CGCAAGAAGGTGTGAACACA 58.986 50.000 15.07 7.41 44.91 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.264749 TTATCACGGGGACAGCTGCT 61.265 55.000 15.27 0.00 0.00 4.24
3 4 2.009774 CTTTTATCACGGGGACAGCTG 58.990 52.381 13.48 13.48 0.00 4.24
4 5 1.906574 TCTTTTATCACGGGGACAGCT 59.093 47.619 0.00 0.00 0.00 4.24
5 6 2.280628 CTCTTTTATCACGGGGACAGC 58.719 52.381 0.00 0.00 0.00 4.40
6 7 3.611766 ACTCTTTTATCACGGGGACAG 57.388 47.619 0.00 0.00 0.00 3.51
7 8 4.360951 AAACTCTTTTATCACGGGGACA 57.639 40.909 0.00 0.00 0.00 4.02
8 9 5.350640 CACTAAACTCTTTTATCACGGGGAC 59.649 44.000 0.00 0.00 0.00 4.46
9 10 5.484715 CACTAAACTCTTTTATCACGGGGA 58.515 41.667 0.00 0.00 0.00 4.81
10 11 4.634443 CCACTAAACTCTTTTATCACGGGG 59.366 45.833 0.00 0.00 0.00 5.73
11 12 5.484715 TCCACTAAACTCTTTTATCACGGG 58.515 41.667 0.00 0.00 0.00 5.28
12 13 5.581085 CCTCCACTAAACTCTTTTATCACGG 59.419 44.000 0.00 0.00 0.00 4.94
13 14 5.581085 CCCTCCACTAAACTCTTTTATCACG 59.419 44.000 0.00 0.00 0.00 4.35
14 15 5.354513 GCCCTCCACTAAACTCTTTTATCAC 59.645 44.000 0.00 0.00 0.00 3.06
15 16 5.497474 GCCCTCCACTAAACTCTTTTATCA 58.503 41.667 0.00 0.00 0.00 2.15
16 17 4.882427 GGCCCTCCACTAAACTCTTTTATC 59.118 45.833 0.00 0.00 0.00 1.75
17 18 4.625564 CGGCCCTCCACTAAACTCTTTTAT 60.626 45.833 0.00 0.00 0.00 1.40
18 19 3.307199 CGGCCCTCCACTAAACTCTTTTA 60.307 47.826 0.00 0.00 0.00 1.52
19 20 2.552373 CGGCCCTCCACTAAACTCTTTT 60.552 50.000 0.00 0.00 0.00 2.27
20 21 1.003233 CGGCCCTCCACTAAACTCTTT 59.997 52.381 0.00 0.00 0.00 2.52
21 22 0.613777 CGGCCCTCCACTAAACTCTT 59.386 55.000 0.00 0.00 0.00 2.85
22 23 0.544595 ACGGCCCTCCACTAAACTCT 60.545 55.000 0.00 0.00 0.00 3.24
23 24 0.323957 AACGGCCCTCCACTAAACTC 59.676 55.000 0.00 0.00 0.00 3.01
24 25 0.769247 AAACGGCCCTCCACTAAACT 59.231 50.000 0.00 0.00 0.00 2.66
25 26 1.268625 CAAAACGGCCCTCCACTAAAC 59.731 52.381 0.00 0.00 0.00 2.01
26 27 1.611519 CAAAACGGCCCTCCACTAAA 58.388 50.000 0.00 0.00 0.00 1.85
27 28 0.250989 CCAAAACGGCCCTCCACTAA 60.251 55.000 0.00 0.00 0.00 2.24
28 29 1.377229 CCAAAACGGCCCTCCACTA 59.623 57.895 0.00 0.00 0.00 2.74
29 30 2.115266 CCAAAACGGCCCTCCACT 59.885 61.111 0.00 0.00 0.00 4.00
38 39 2.203422 TCCCCACAGCCAAAACGG 60.203 61.111 0.00 0.00 38.11 4.44
39 40 2.919494 GCTCCCCACAGCCAAAACG 61.919 63.158 0.00 0.00 32.76 3.60
40 41 1.187567 ATGCTCCCCACAGCCAAAAC 61.188 55.000 0.00 0.00 38.80 2.43
41 42 0.407528 TATGCTCCCCACAGCCAAAA 59.592 50.000 0.00 0.00 38.80 2.44
42 43 0.630673 ATATGCTCCCCACAGCCAAA 59.369 50.000 0.00 0.00 38.80 3.28
43 44 0.106569 CATATGCTCCCCACAGCCAA 60.107 55.000 0.00 0.00 38.80 4.52
44 45 1.533219 CATATGCTCCCCACAGCCA 59.467 57.895 0.00 0.00 38.80 4.75
45 46 1.900498 GCATATGCTCCCCACAGCC 60.900 63.158 20.64 0.00 38.80 4.85
46 47 3.755434 GCATATGCTCCCCACAGC 58.245 61.111 20.64 0.00 40.13 4.40
56 57 4.256920 ACTATTCATCCGGAAGCATATGC 58.743 43.478 20.36 20.36 39.30 3.14
57 58 7.905604 TTTACTATTCATCCGGAAGCATATG 57.094 36.000 9.01 0.00 39.30 1.78
58 59 9.520515 AAATTTACTATTCATCCGGAAGCATAT 57.479 29.630 9.01 1.04 39.30 1.78
59 60 8.918202 AAATTTACTATTCATCCGGAAGCATA 57.082 30.769 9.01 3.09 39.30 3.14
60 61 7.823745 AAATTTACTATTCATCCGGAAGCAT 57.176 32.000 9.01 1.70 39.30 3.79
61 62 7.639113 AAAATTTACTATTCATCCGGAAGCA 57.361 32.000 9.01 0.00 39.30 3.91
62 63 9.612620 CATAAAATTTACTATTCATCCGGAAGC 57.387 33.333 9.01 0.00 39.30 3.86
91 92 9.433153 GCACCTTTGTTAGACTACTTTACTATT 57.567 33.333 0.00 0.00 0.00 1.73
92 93 8.813951 AGCACCTTTGTTAGACTACTTTACTAT 58.186 33.333 0.00 0.00 0.00 2.12
93 94 8.186709 AGCACCTTTGTTAGACTACTTTACTA 57.813 34.615 0.00 0.00 0.00 1.82
94 95 7.063934 AGCACCTTTGTTAGACTACTTTACT 57.936 36.000 0.00 0.00 0.00 2.24
95 96 7.440255 TCAAGCACCTTTGTTAGACTACTTTAC 59.560 37.037 0.00 0.00 0.00 2.01
96 97 7.502696 TCAAGCACCTTTGTTAGACTACTTTA 58.497 34.615 0.00 0.00 0.00 1.85
97 98 6.354130 TCAAGCACCTTTGTTAGACTACTTT 58.646 36.000 0.00 0.00 0.00 2.66
98 99 5.925509 TCAAGCACCTTTGTTAGACTACTT 58.074 37.500 0.00 0.00 0.00 2.24
99 100 5.304614 TCTCAAGCACCTTTGTTAGACTACT 59.695 40.000 0.00 0.00 0.00 2.57
100 101 5.539048 TCTCAAGCACCTTTGTTAGACTAC 58.461 41.667 0.00 0.00 0.00 2.73
101 102 5.801531 TCTCAAGCACCTTTGTTAGACTA 57.198 39.130 0.00 0.00 0.00 2.59
102 103 4.689612 TCTCAAGCACCTTTGTTAGACT 57.310 40.909 0.00 0.00 0.00 3.24
103 104 5.948992 ATTCTCAAGCACCTTTGTTAGAC 57.051 39.130 0.00 0.00 0.00 2.59
104 105 6.959639 AAATTCTCAAGCACCTTTGTTAGA 57.040 33.333 0.00 0.00 0.00 2.10
105 106 7.202526 TGAAAATTCTCAAGCACCTTTGTTAG 58.797 34.615 0.00 0.00 0.00 2.34
106 107 7.106439 TGAAAATTCTCAAGCACCTTTGTTA 57.894 32.000 0.00 0.00 0.00 2.41
107 108 5.976458 TGAAAATTCTCAAGCACCTTTGTT 58.024 33.333 0.00 0.00 0.00 2.83
108 109 5.596836 TGAAAATTCTCAAGCACCTTTGT 57.403 34.783 0.00 0.00 0.00 2.83
109 110 5.987347 ACATGAAAATTCTCAAGCACCTTTG 59.013 36.000 0.00 0.00 0.00 2.77
110 111 5.987347 CACATGAAAATTCTCAAGCACCTTT 59.013 36.000 0.00 0.00 0.00 3.11
111 112 5.510179 CCACATGAAAATTCTCAAGCACCTT 60.510 40.000 0.00 0.00 0.00 3.50
112 113 4.021719 CCACATGAAAATTCTCAAGCACCT 60.022 41.667 0.00 0.00 0.00 4.00
113 114 4.022068 TCCACATGAAAATTCTCAAGCACC 60.022 41.667 0.00 0.00 0.00 5.01
114 115 5.125100 TCCACATGAAAATTCTCAAGCAC 57.875 39.130 0.00 0.00 0.00 4.40
115 116 5.531634 GTTCCACATGAAAATTCTCAAGCA 58.468 37.500 0.00 0.00 33.94 3.91
116 117 4.618489 CGTTCCACATGAAAATTCTCAAGC 59.382 41.667 0.00 0.00 33.94 4.01
117 118 5.048782 TCCGTTCCACATGAAAATTCTCAAG 60.049 40.000 0.00 0.00 33.94 3.02
118 119 4.824537 TCCGTTCCACATGAAAATTCTCAA 59.175 37.500 0.00 0.00 33.94 3.02
119 120 4.393834 TCCGTTCCACATGAAAATTCTCA 58.606 39.130 0.00 0.00 33.94 3.27
120 121 5.371115 TTCCGTTCCACATGAAAATTCTC 57.629 39.130 0.00 0.00 33.94 2.87
121 122 5.982890 ATTCCGTTCCACATGAAAATTCT 57.017 34.783 0.00 0.00 33.94 2.40
122 123 5.743872 GCTATTCCGTTCCACATGAAAATTC 59.256 40.000 0.00 0.00 33.94 2.17
123 124 5.184864 TGCTATTCCGTTCCACATGAAAATT 59.815 36.000 0.00 0.00 33.94 1.82
124 125 4.704540 TGCTATTCCGTTCCACATGAAAAT 59.295 37.500 0.00 0.00 33.94 1.82
125 126 4.075682 TGCTATTCCGTTCCACATGAAAA 58.924 39.130 0.00 0.00 33.94 2.29
126 127 3.680490 TGCTATTCCGTTCCACATGAAA 58.320 40.909 0.00 0.00 33.94 2.69
127 128 3.270027 CTGCTATTCCGTTCCACATGAA 58.730 45.455 0.00 0.00 0.00 2.57
128 129 2.236146 ACTGCTATTCCGTTCCACATGA 59.764 45.455 0.00 0.00 0.00 3.07
129 130 2.352651 CACTGCTATTCCGTTCCACATG 59.647 50.000 0.00 0.00 0.00 3.21
130 131 2.632377 CACTGCTATTCCGTTCCACAT 58.368 47.619 0.00 0.00 0.00 3.21
131 132 1.943968 GCACTGCTATTCCGTTCCACA 60.944 52.381 0.00 0.00 0.00 4.17
132 133 0.727398 GCACTGCTATTCCGTTCCAC 59.273 55.000 0.00 0.00 0.00 4.02
133 134 0.613260 AGCACTGCTATTCCGTTCCA 59.387 50.000 0.21 0.00 36.99 3.53
134 135 1.739067 AAGCACTGCTATTCCGTTCC 58.261 50.000 3.33 0.00 38.25 3.62
135 136 2.484264 ACAAAGCACTGCTATTCCGTTC 59.516 45.455 3.33 0.00 38.25 3.95
136 137 2.484264 GACAAAGCACTGCTATTCCGTT 59.516 45.455 3.33 0.00 38.25 4.44
137 138 2.076863 GACAAAGCACTGCTATTCCGT 58.923 47.619 3.33 0.00 38.25 4.69
138 139 1.061131 CGACAAAGCACTGCTATTCCG 59.939 52.381 3.33 2.98 38.25 4.30
139 140 1.398390 CCGACAAAGCACTGCTATTCC 59.602 52.381 3.33 0.00 38.25 3.01
140 141 2.076863 ACCGACAAAGCACTGCTATTC 58.923 47.619 3.33 0.49 38.25 1.75
141 142 1.806542 CACCGACAAAGCACTGCTATT 59.193 47.619 3.33 0.00 38.25 1.73
142 143 1.001974 TCACCGACAAAGCACTGCTAT 59.998 47.619 3.33 0.00 38.25 2.97
143 144 0.391228 TCACCGACAAAGCACTGCTA 59.609 50.000 3.33 0.00 38.25 3.49
144 145 0.463654 TTCACCGACAAAGCACTGCT 60.464 50.000 0.00 0.00 42.56 4.24
145 146 0.380378 TTTCACCGACAAAGCACTGC 59.620 50.000 0.00 0.00 0.00 4.40
146 147 2.842208 TTTTCACCGACAAAGCACTG 57.158 45.000 0.00 0.00 0.00 3.66
147 148 2.159296 GGTTTTTCACCGACAAAGCACT 60.159 45.455 1.18 0.00 35.12 4.40
148 149 2.190161 GGTTTTTCACCGACAAAGCAC 58.810 47.619 1.18 0.00 35.12 4.40
149 150 2.570442 GGTTTTTCACCGACAAAGCA 57.430 45.000 1.18 0.00 35.12 3.91
159 160 8.745464 TGTTACACTAAGTTTTGGTTTTTCAC 57.255 30.769 0.00 0.00 0.00 3.18
160 161 9.575783 GATGTTACACTAAGTTTTGGTTTTTCA 57.424 29.630 0.00 0.00 0.00 2.69
161 162 9.797556 AGATGTTACACTAAGTTTTGGTTTTTC 57.202 29.630 0.00 0.00 0.00 2.29
162 163 9.581099 CAGATGTTACACTAAGTTTTGGTTTTT 57.419 29.630 0.00 0.00 0.00 1.94
163 164 8.962679 TCAGATGTTACACTAAGTTTTGGTTTT 58.037 29.630 0.00 0.00 0.00 2.43
164 165 8.514330 TCAGATGTTACACTAAGTTTTGGTTT 57.486 30.769 0.00 0.00 0.00 3.27
165 166 8.691661 ATCAGATGTTACACTAAGTTTTGGTT 57.308 30.769 0.00 0.00 0.00 3.67
166 167 8.691661 AATCAGATGTTACACTAAGTTTTGGT 57.308 30.769 0.00 0.00 0.00 3.67
167 168 9.398170 CAAATCAGATGTTACACTAAGTTTTGG 57.602 33.333 0.00 0.00 0.00 3.28
196 197 4.582701 ACCATTTCGATCTGTGCAAAAA 57.417 36.364 0.00 0.00 0.00 1.94
197 198 4.582701 AACCATTTCGATCTGTGCAAAA 57.417 36.364 0.00 0.00 0.00 2.44
198 199 5.697473 TTAACCATTTCGATCTGTGCAAA 57.303 34.783 0.00 0.00 0.00 3.68
199 200 4.379394 GCTTAACCATTTCGATCTGTGCAA 60.379 41.667 0.00 0.00 0.00 4.08
200 201 3.126858 GCTTAACCATTTCGATCTGTGCA 59.873 43.478 0.00 0.00 0.00 4.57
201 202 3.375299 AGCTTAACCATTTCGATCTGTGC 59.625 43.478 0.00 0.00 0.00 4.57
202 203 5.551760 AAGCTTAACCATTTCGATCTGTG 57.448 39.130 0.00 0.00 0.00 3.66
203 204 6.349363 GGAAAAGCTTAACCATTTCGATCTGT 60.349 38.462 14.44 0.00 33.62 3.41
204 205 6.030228 GGAAAAGCTTAACCATTTCGATCTG 58.970 40.000 14.44 0.00 33.62 2.90
205 206 5.710099 TGGAAAAGCTTAACCATTTCGATCT 59.290 36.000 17.06 0.00 33.62 2.75
206 207 5.800438 GTGGAAAAGCTTAACCATTTCGATC 59.200 40.000 21.73 8.44 34.87 3.69
207 208 5.476945 AGTGGAAAAGCTTAACCATTTCGAT 59.523 36.000 21.73 7.07 34.87 3.59
208 209 4.825085 AGTGGAAAAGCTTAACCATTTCGA 59.175 37.500 21.73 7.22 34.87 3.71
209 210 5.121221 AGTGGAAAAGCTTAACCATTTCG 57.879 39.130 21.73 0.00 34.87 3.46
210 211 7.448748 TCTAGTGGAAAAGCTTAACCATTTC 57.551 36.000 21.73 11.50 34.87 2.17
211 212 7.833285 TTCTAGTGGAAAAGCTTAACCATTT 57.167 32.000 21.73 16.66 34.87 2.32
212 213 7.833285 TTTCTAGTGGAAAAGCTTAACCATT 57.167 32.000 21.73 20.00 40.51 3.16
213 214 8.422577 AATTTCTAGTGGAAAAGCTTAACCAT 57.577 30.769 21.73 14.97 45.56 3.55
214 215 7.833285 AATTTCTAGTGGAAAAGCTTAACCA 57.167 32.000 17.06 17.06 45.56 3.67
215 216 9.622004 GTAAATTTCTAGTGGAAAAGCTTAACC 57.378 33.333 5.71 7.15 45.56 2.85
218 219 9.010029 CCTGTAAATTTCTAGTGGAAAAGCTTA 57.990 33.333 5.71 2.46 45.56 3.09
219 220 7.505923 ACCTGTAAATTTCTAGTGGAAAAGCTT 59.494 33.333 5.71 0.00 45.56 3.74
220 221 7.004691 ACCTGTAAATTTCTAGTGGAAAAGCT 58.995 34.615 5.71 0.00 45.56 3.74
221 222 7.215719 ACCTGTAAATTTCTAGTGGAAAAGC 57.784 36.000 5.71 0.00 45.56 3.51
229 230 9.408648 CCCAAATGATACCTGTAAATTTCTAGT 57.591 33.333 0.00 0.00 0.00 2.57
230 231 9.408648 ACCCAAATGATACCTGTAAATTTCTAG 57.591 33.333 0.00 0.00 0.00 2.43
231 232 9.184523 CACCCAAATGATACCTGTAAATTTCTA 57.815 33.333 0.00 0.00 0.00 2.10
232 233 7.673926 ACACCCAAATGATACCTGTAAATTTCT 59.326 33.333 0.00 0.00 0.00 2.52
233 234 7.759433 CACACCCAAATGATACCTGTAAATTTC 59.241 37.037 0.00 0.00 0.00 2.17
234 235 7.453126 TCACACCCAAATGATACCTGTAAATTT 59.547 33.333 0.00 0.00 0.00 1.82
235 236 6.951198 TCACACCCAAATGATACCTGTAAATT 59.049 34.615 0.00 0.00 0.00 1.82
236 237 6.377146 GTCACACCCAAATGATACCTGTAAAT 59.623 38.462 0.00 0.00 0.00 1.40
237 238 5.708230 GTCACACCCAAATGATACCTGTAAA 59.292 40.000 0.00 0.00 0.00 2.01
238 239 5.221945 TGTCACACCCAAATGATACCTGTAA 60.222 40.000 0.00 0.00 0.00 2.41
239 240 4.287326 TGTCACACCCAAATGATACCTGTA 59.713 41.667 0.00 0.00 0.00 2.74
240 241 3.073798 TGTCACACCCAAATGATACCTGT 59.926 43.478 0.00 0.00 0.00 4.00
241 242 3.684908 TGTCACACCCAAATGATACCTG 58.315 45.455 0.00 0.00 0.00 4.00
242 243 4.380843 TTGTCACACCCAAATGATACCT 57.619 40.909 0.00 0.00 0.00 3.08
243 244 4.704540 TCATTGTCACACCCAAATGATACC 59.295 41.667 0.00 0.00 0.00 2.73
244 245 5.895636 TCATTGTCACACCCAAATGATAC 57.104 39.130 0.00 0.00 0.00 2.24
245 246 5.772169 TGTTCATTGTCACACCCAAATGATA 59.228 36.000 0.00 0.00 0.00 2.15
246 247 4.588106 TGTTCATTGTCACACCCAAATGAT 59.412 37.500 0.00 0.00 0.00 2.45
247 248 3.956848 TGTTCATTGTCACACCCAAATGA 59.043 39.130 0.00 0.00 0.00 2.57
248 249 4.319139 TGTTCATTGTCACACCCAAATG 57.681 40.909 0.00 0.00 0.00 2.32
249 250 5.350504 TTTGTTCATTGTCACACCCAAAT 57.649 34.783 0.00 0.00 0.00 2.32
250 251 4.808414 TTTGTTCATTGTCACACCCAAA 57.192 36.364 0.00 0.00 0.00 3.28
251 252 4.648762 AGATTTGTTCATTGTCACACCCAA 59.351 37.500 0.00 0.00 0.00 4.12
252 253 4.214310 AGATTTGTTCATTGTCACACCCA 58.786 39.130 0.00 0.00 0.00 4.51
253 254 4.853924 AGATTTGTTCATTGTCACACCC 57.146 40.909 0.00 0.00 0.00 4.61
254 255 6.560253 ACTAGATTTGTTCATTGTCACACC 57.440 37.500 0.00 0.00 0.00 4.16
255 256 8.856490 AAAACTAGATTTGTTCATTGTCACAC 57.144 30.769 0.00 0.00 0.00 3.82
256 257 9.515020 GAAAAACTAGATTTGTTCATTGTCACA 57.485 29.630 0.00 0.00 0.00 3.58
257 258 9.736023 AGAAAAACTAGATTTGTTCATTGTCAC 57.264 29.630 0.00 0.00 0.00 3.67
290 291 9.991388 CAAAAATGATTTCACAAATGTTCAAGT 57.009 25.926 0.00 0.00 0.00 3.16
293 294 8.828644 CCTCAAAAATGATTTCACAAATGTTCA 58.171 29.630 0.00 0.00 0.00 3.18
294 295 9.044150 TCCTCAAAAATGATTTCACAAATGTTC 57.956 29.630 0.00 0.00 0.00 3.18
295 296 8.961294 TCCTCAAAAATGATTTCACAAATGTT 57.039 26.923 0.00 0.00 0.00 2.71
296 297 7.172019 GCTCCTCAAAAATGATTTCACAAATGT 59.828 33.333 0.00 0.00 0.00 2.71
297 298 7.171848 TGCTCCTCAAAAATGATTTCACAAATG 59.828 33.333 0.00 0.00 0.00 2.32
298 299 7.218614 TGCTCCTCAAAAATGATTTCACAAAT 58.781 30.769 0.00 0.00 0.00 2.32
299 300 6.580788 TGCTCCTCAAAAATGATTTCACAAA 58.419 32.000 0.00 0.00 0.00 2.83
300 301 6.159299 TGCTCCTCAAAAATGATTTCACAA 57.841 33.333 0.00 0.00 0.00 3.33
301 302 5.279106 CCTGCTCCTCAAAAATGATTTCACA 60.279 40.000 0.00 0.00 0.00 3.58
302 303 5.047802 TCCTGCTCCTCAAAAATGATTTCAC 60.048 40.000 0.00 0.00 0.00 3.18
303 304 5.078949 TCCTGCTCCTCAAAAATGATTTCA 58.921 37.500 0.00 0.00 0.00 2.69
304 305 5.648572 CTCCTGCTCCTCAAAAATGATTTC 58.351 41.667 0.00 0.00 0.00 2.17
305 306 4.081807 GCTCCTGCTCCTCAAAAATGATTT 60.082 41.667 0.00 0.00 36.03 2.17
306 307 3.446516 GCTCCTGCTCCTCAAAAATGATT 59.553 43.478 0.00 0.00 36.03 2.57
307 308 3.022406 GCTCCTGCTCCTCAAAAATGAT 58.978 45.455 0.00 0.00 36.03 2.45
308 309 2.224843 TGCTCCTGCTCCTCAAAAATGA 60.225 45.455 0.00 0.00 40.48 2.57
309 310 2.165167 TGCTCCTGCTCCTCAAAAATG 58.835 47.619 0.00 0.00 40.48 2.32
310 311 2.592102 TGCTCCTGCTCCTCAAAAAT 57.408 45.000 0.00 0.00 40.48 1.82
311 312 2.592102 ATGCTCCTGCTCCTCAAAAA 57.408 45.000 0.00 0.00 40.48 1.94
312 313 3.548770 CATATGCTCCTGCTCCTCAAAA 58.451 45.455 0.00 0.00 40.48 2.44
313 314 2.747467 GCATATGCTCCTGCTCCTCAAA 60.747 50.000 20.64 0.00 40.48 2.69
314 315 1.202734 GCATATGCTCCTGCTCCTCAA 60.203 52.381 20.64 0.00 40.48 3.02
315 316 0.395686 GCATATGCTCCTGCTCCTCA 59.604 55.000 20.64 0.00 40.48 3.86
316 317 3.230115 GCATATGCTCCTGCTCCTC 57.770 57.895 20.64 0.00 40.48 3.71
327 328 1.235948 GGCTGAGCCTGAGCATATGC 61.236 60.000 20.36 20.36 46.69 3.14
328 329 2.929830 GGCTGAGCCTGAGCATATG 58.070 57.895 17.96 0.00 46.69 1.78
341 342 0.247460 CATTCAGGACTCACGGCTGA 59.753 55.000 0.00 0.00 0.00 4.26
342 343 0.036952 ACATTCAGGACTCACGGCTG 60.037 55.000 0.00 0.00 0.00 4.85
343 344 0.247736 GACATTCAGGACTCACGGCT 59.752 55.000 0.00 0.00 0.00 5.52
344 345 1.078759 CGACATTCAGGACTCACGGC 61.079 60.000 0.00 0.00 0.00 5.68
345 346 0.458543 CCGACATTCAGGACTCACGG 60.459 60.000 0.00 0.00 0.00 4.94
346 347 0.458543 CCCGACATTCAGGACTCACG 60.459 60.000 0.00 0.00 0.00 4.35
347 348 0.741221 GCCCGACATTCAGGACTCAC 60.741 60.000 0.00 0.00 0.00 3.51
348 349 1.596934 GCCCGACATTCAGGACTCA 59.403 57.895 0.00 0.00 0.00 3.41
349 350 1.519455 CGCCCGACATTCAGGACTC 60.519 63.158 0.00 0.00 0.00 3.36
350 351 1.541310 TTCGCCCGACATTCAGGACT 61.541 55.000 0.00 0.00 0.00 3.85
351 352 1.079405 TTCGCCCGACATTCAGGAC 60.079 57.895 0.00 0.00 0.00 3.85
352 353 1.218047 CTTCGCCCGACATTCAGGA 59.782 57.895 0.00 0.00 0.00 3.86
353 354 1.815421 CCTTCGCCCGACATTCAGG 60.815 63.158 0.00 0.00 0.00 3.86
354 355 1.079127 ACCTTCGCCCGACATTCAG 60.079 57.895 0.00 0.00 0.00 3.02
355 356 1.375396 CACCTTCGCCCGACATTCA 60.375 57.895 0.00 0.00 0.00 2.57
356 357 2.750888 GCACCTTCGCCCGACATTC 61.751 63.158 0.00 0.00 0.00 2.67
357 358 2.746277 GCACCTTCGCCCGACATT 60.746 61.111 0.00 0.00 0.00 2.71
383 384 2.509336 CCAGTAGTGGCGCTTCGG 60.509 66.667 5.61 1.25 36.89 4.30
424 425 2.866523 TAACGTCCTCCATCGCCCCT 62.867 60.000 0.00 0.00 0.00 4.79
428 429 2.128035 CAATCTAACGTCCTCCATCGC 58.872 52.381 0.00 0.00 0.00 4.58
430 431 4.386867 TGACAATCTAACGTCCTCCATC 57.613 45.455 0.00 0.00 0.00 3.51
438 439 7.280205 GGAAATACCAGATTGACAATCTAACGT 59.720 37.037 26.37 22.68 46.20 3.99
445 446 5.110814 TCCGGAAATACCAGATTGACAAT 57.889 39.130 0.00 0.00 38.90 2.71
450 451 4.067896 CCTGATCCGGAAATACCAGATTG 58.932 47.826 9.01 0.00 36.07 2.67
451 452 3.973973 TCCTGATCCGGAAATACCAGATT 59.026 43.478 9.01 0.00 36.07 2.40
455 456 2.224523 GCATCCTGATCCGGAAATACCA 60.225 50.000 9.01 0.77 36.49 3.25
487 488 0.795698 CGCCATGAAACACACGATGA 59.204 50.000 0.00 0.00 0.00 2.92
492 493 3.959943 AGTTTTACGCCATGAAACACAC 58.040 40.909 8.99 0.00 38.85 3.82
524 525 8.946085 CACCCTCGCAACAATATATATTTACAT 58.054 33.333 5.18 0.00 0.00 2.29
528 529 5.767665 TGCACCCTCGCAACAATATATATTT 59.232 36.000 5.18 0.00 39.45 1.40
534 535 2.057137 ATGCACCCTCGCAACAATAT 57.943 45.000 0.00 0.00 46.87 1.28
536 537 1.832883 TTATGCACCCTCGCAACAAT 58.167 45.000 0.00 0.00 46.87 2.71
539 540 1.331756 CTCATTATGCACCCTCGCAAC 59.668 52.381 0.00 0.00 46.87 4.17
543 544 6.038161 TGAATAAAACTCATTATGCACCCTCG 59.962 38.462 0.00 0.00 27.92 4.63
604 605 8.721478 ACCATCAGATTATAACGTGAAATATGC 58.279 33.333 0.00 0.00 0.00 3.14
610 611 6.537301 GGTGAACCATCAGATTATAACGTGAA 59.463 38.462 0.00 0.00 35.88 3.18
617 618 6.806668 TGTGAGGTGAACCATCAGATTATA 57.193 37.500 1.62 0.00 35.88 0.98
618 619 5.698741 TGTGAGGTGAACCATCAGATTAT 57.301 39.130 1.62 0.00 35.88 1.28
620 621 4.581309 ATGTGAGGTGAACCATCAGATT 57.419 40.909 1.62 0.00 35.88 2.40
621 622 4.226846 AGAATGTGAGGTGAACCATCAGAT 59.773 41.667 1.62 4.42 35.88 2.90
625 626 3.012518 CCAGAATGTGAGGTGAACCATC 58.987 50.000 1.62 0.00 38.89 3.51
627 628 1.774254 ACCAGAATGTGAGGTGAACCA 59.226 47.619 1.62 0.00 38.89 3.67
628 629 2.568623 ACCAGAATGTGAGGTGAACC 57.431 50.000 0.00 0.00 33.57 3.62
633 634 1.774254 TGAACCACCAGAATGTGAGGT 59.226 47.619 0.00 0.00 38.55 3.85
635 636 2.163010 GCATGAACCACCAGAATGTGAG 59.837 50.000 0.00 0.00 38.55 3.51
637 638 1.887854 TGCATGAACCACCAGAATGTG 59.112 47.619 0.00 0.00 35.98 3.21
638 639 2.291209 TGCATGAACCACCAGAATGT 57.709 45.000 0.00 0.00 0.00 2.71
648 649 7.907056 CATGATCATGGTGGTTGCATGAACC 62.907 48.000 25.37 15.94 43.30 3.62
649 650 2.492881 TGATCATGGTGGTTGCATGAAC 59.507 45.455 0.00 0.00 38.60 3.18
650 651 2.805194 TGATCATGGTGGTTGCATGAA 58.195 42.857 0.00 0.00 38.60 2.57
651 652 2.510928 TGATCATGGTGGTTGCATGA 57.489 45.000 0.00 0.00 39.31 3.07
654 655 1.819903 CACATGATCATGGTGGTTGCA 59.180 47.619 33.31 0.00 42.91 4.08
655 656 1.820519 ACACATGATCATGGTGGTTGC 59.179 47.619 33.31 0.00 42.91 4.17
656 657 4.516323 TCTACACATGATCATGGTGGTTG 58.484 43.478 33.31 26.28 42.91 3.77
657 658 4.842531 TCTACACATGATCATGGTGGTT 57.157 40.909 33.31 18.15 42.91 3.67
660 661 5.987953 CCTAGTTCTACACATGATCATGGTG 59.012 44.000 33.31 28.30 42.91 4.17
661 662 5.453903 GCCTAGTTCTACACATGATCATGGT 60.454 44.000 33.31 28.16 42.91 3.55
662 663 4.993584 GCCTAGTTCTACACATGATCATGG 59.006 45.833 33.31 24.89 42.91 3.66
665 666 4.711846 ACAGCCTAGTTCTACACATGATCA 59.288 41.667 0.00 0.00 0.00 2.92
666 667 5.269505 ACAGCCTAGTTCTACACATGATC 57.730 43.478 0.00 0.00 0.00 2.92
667 668 6.039941 GTCTACAGCCTAGTTCTACACATGAT 59.960 42.308 0.00 0.00 0.00 2.45
668 669 5.357314 GTCTACAGCCTAGTTCTACACATGA 59.643 44.000 0.00 0.00 0.00 3.07
671 672 4.919793 AGTCTACAGCCTAGTTCTACACA 58.080 43.478 0.00 0.00 0.00 3.72
672 673 6.037391 CACTAGTCTACAGCCTAGTTCTACAC 59.963 46.154 0.00 0.00 41.41 2.90
673 674 6.114089 CACTAGTCTACAGCCTAGTTCTACA 58.886 44.000 0.00 0.00 41.41 2.74
674 675 5.528320 CCACTAGTCTACAGCCTAGTTCTAC 59.472 48.000 0.00 0.00 41.41 2.59
675 676 5.682659 CCACTAGTCTACAGCCTAGTTCTA 58.317 45.833 0.00 0.00 41.41 2.10
676 677 4.528920 CCACTAGTCTACAGCCTAGTTCT 58.471 47.826 0.00 0.00 41.41 3.01
677 678 3.067040 GCCACTAGTCTACAGCCTAGTTC 59.933 52.174 0.00 0.00 41.41 3.01
678 679 3.025262 GCCACTAGTCTACAGCCTAGTT 58.975 50.000 0.00 0.00 41.41 2.24
679 680 2.025226 TGCCACTAGTCTACAGCCTAGT 60.025 50.000 0.00 0.00 43.52 2.57
680 681 2.656002 TGCCACTAGTCTACAGCCTAG 58.344 52.381 0.00 0.00 37.32 3.02
682 683 1.938585 TTGCCACTAGTCTACAGCCT 58.061 50.000 0.00 0.00 0.00 4.58
685 2298 2.567615 ACCCTTTGCCACTAGTCTACAG 59.432 50.000 0.00 0.00 0.00 2.74
689 2302 1.348036 GTGACCCTTTGCCACTAGTCT 59.652 52.381 0.00 0.00 0.00 3.24
697 2310 0.318120 CACCATTGTGACCCTTTGCC 59.682 55.000 0.00 0.00 45.76 4.52
701 2314 0.827507 GGTGCACCATTGTGACCCTT 60.828 55.000 31.23 0.00 45.76 3.95
703 2316 2.275380 GGGTGCACCATTGTGACCC 61.275 63.158 35.78 12.94 46.25 4.46
705 2318 4.172625 TGGGTGCACCATTGTGAC 57.827 55.556 35.78 17.77 46.80 3.67
714 2327 4.082523 TCTAGCCGCTGGGTGCAC 62.083 66.667 8.80 8.80 43.06 4.57
717 2330 1.068753 CATCTCTAGCCGCTGGGTG 59.931 63.158 2.16 0.00 34.28 4.61
718 2331 0.470833 ATCATCTCTAGCCGCTGGGT 60.471 55.000 2.16 4.77 37.19 4.51
719 2332 0.246086 GATCATCTCTAGCCGCTGGG 59.754 60.000 2.16 0.00 0.00 4.45
720 2333 0.246086 GGATCATCTCTAGCCGCTGG 59.754 60.000 2.16 0.00 0.00 4.85
721 2334 0.246086 GGGATCATCTCTAGCCGCTG 59.754 60.000 2.16 0.00 0.00 5.18
722 2335 1.247419 CGGGATCATCTCTAGCCGCT 61.247 60.000 0.00 0.00 0.00 5.52
723 2336 1.214062 CGGGATCATCTCTAGCCGC 59.786 63.158 0.00 0.00 0.00 6.53
724 2337 0.523966 GACGGGATCATCTCTAGCCG 59.476 60.000 0.00 0.00 33.80 5.52
725 2338 0.523966 CGACGGGATCATCTCTAGCC 59.476 60.000 0.00 0.00 0.00 3.93
726 2339 1.466950 CTCGACGGGATCATCTCTAGC 59.533 57.143 0.00 0.00 0.00 3.42
727 2340 3.000041 CTCTCGACGGGATCATCTCTAG 59.000 54.545 0.00 0.00 0.00 2.43
728 2341 2.872440 GCTCTCGACGGGATCATCTCTA 60.872 54.545 0.00 0.00 0.00 2.43
729 2342 1.890876 CTCTCGACGGGATCATCTCT 58.109 55.000 0.00 0.00 0.00 3.10
731 2344 1.511318 CGCTCTCGACGGGATCATCT 61.511 60.000 0.00 0.00 38.10 2.90
733 2346 1.101635 TTCGCTCTCGACGGGATCAT 61.102 55.000 0.00 0.00 45.43 2.45
738 2351 0.179134 AGAAATTCGCTCTCGACGGG 60.179 55.000 0.00 0.00 45.43 5.28
739 2352 2.223294 ACTAGAAATTCGCTCTCGACGG 60.223 50.000 0.00 0.00 45.43 4.79
740 2353 3.054276 ACTAGAAATTCGCTCTCGACG 57.946 47.619 0.00 0.00 45.43 5.12
741 2354 3.792421 GGAACTAGAAATTCGCTCTCGAC 59.208 47.826 0.00 0.00 45.43 4.20
742 2355 3.695060 AGGAACTAGAAATTCGCTCTCGA 59.305 43.478 0.00 0.00 39.49 4.04
743 2356 4.035278 AGGAACTAGAAATTCGCTCTCG 57.965 45.455 0.00 0.00 36.02 4.04
744 2357 5.000012 TGAGGAACTAGAAATTCGCTCTC 58.000 43.478 0.00 0.00 41.55 3.20
745 2358 5.452636 GGATGAGGAACTAGAAATTCGCTCT 60.453 44.000 0.00 0.00 41.55 4.09
746 2359 4.747605 GGATGAGGAACTAGAAATTCGCTC 59.252 45.833 0.00 0.76 41.55 5.03
747 2360 4.698575 GGATGAGGAACTAGAAATTCGCT 58.301 43.478 0.00 0.00 41.55 4.93
748 2361 3.491267 CGGATGAGGAACTAGAAATTCGC 59.509 47.826 0.00 0.00 41.55 4.70
749 2362 4.051922 CCGGATGAGGAACTAGAAATTCG 58.948 47.826 0.00 0.00 41.55 3.34
750 2363 4.141688 ACCCGGATGAGGAACTAGAAATTC 60.142 45.833 0.73 0.00 41.55 2.17
751 2364 3.780850 ACCCGGATGAGGAACTAGAAATT 59.219 43.478 0.73 0.00 41.55 1.82
752 2365 3.385115 ACCCGGATGAGGAACTAGAAAT 58.615 45.455 0.73 0.00 41.55 2.17
753 2366 2.829023 ACCCGGATGAGGAACTAGAAA 58.171 47.619 0.73 0.00 41.55 2.52
754 2367 2.500098 CAACCCGGATGAGGAACTAGAA 59.500 50.000 0.73 0.00 41.55 2.10
755 2368 2.108168 CAACCCGGATGAGGAACTAGA 58.892 52.381 0.73 0.00 41.55 2.43
756 2369 1.139058 CCAACCCGGATGAGGAACTAG 59.861 57.143 0.73 0.00 35.58 2.57
757 2370 1.200519 CCAACCCGGATGAGGAACTA 58.799 55.000 0.73 0.00 35.58 2.24
758 2371 1.991230 CCAACCCGGATGAGGAACT 59.009 57.895 0.73 0.00 38.57 3.01
759 2372 1.749258 GCCAACCCGGATGAGGAAC 60.749 63.158 0.73 0.00 36.56 3.62
762 2375 1.452108 GAAGCCAACCCGGATGAGG 60.452 63.158 0.73 0.00 36.56 3.86
763 2376 0.035056 AAGAAGCCAACCCGGATGAG 60.035 55.000 0.73 0.00 36.56 2.90
764 2377 0.035439 GAAGAAGCCAACCCGGATGA 60.035 55.000 0.73 0.00 36.56 2.92
767 2380 1.354101 TTAGAAGAAGCCAACCCGGA 58.646 50.000 0.73 0.00 36.56 5.14
768 2381 2.420058 ATTAGAAGAAGCCAACCCGG 57.580 50.000 0.00 0.00 38.11 5.73
769 2382 3.308866 CGTTATTAGAAGAAGCCAACCCG 59.691 47.826 0.00 0.00 0.00 5.28
771 2384 3.939592 AGCGTTATTAGAAGAAGCCAACC 59.060 43.478 0.00 0.00 0.00 3.77
772 2385 4.630069 TGAGCGTTATTAGAAGAAGCCAAC 59.370 41.667 0.00 0.00 0.00 3.77
773 2386 4.827692 TGAGCGTTATTAGAAGAAGCCAA 58.172 39.130 0.00 0.00 0.00 4.52
774 2387 4.433615 CTGAGCGTTATTAGAAGAAGCCA 58.566 43.478 0.00 0.00 0.00 4.75
775 2388 3.246463 GCTGAGCGTTATTAGAAGAAGCC 59.754 47.826 0.00 0.00 0.00 4.35
776 2389 4.116238 AGCTGAGCGTTATTAGAAGAAGC 58.884 43.478 0.00 0.00 0.00 3.86
777 2390 5.587289 AGAGCTGAGCGTTATTAGAAGAAG 58.413 41.667 0.00 0.00 0.00 2.85
778 2391 5.584253 AGAGCTGAGCGTTATTAGAAGAA 57.416 39.130 0.00 0.00 0.00 2.52
779 2392 5.584253 AAGAGCTGAGCGTTATTAGAAGA 57.416 39.130 0.00 0.00 0.00 2.87
782 2395 5.324784 TGAAAGAGCTGAGCGTTATTAGA 57.675 39.130 0.00 0.00 0.00 2.10
784 2397 5.234752 TGTTGAAAGAGCTGAGCGTTATTA 58.765 37.500 0.00 0.00 0.00 0.98
785 2398 4.065088 TGTTGAAAGAGCTGAGCGTTATT 58.935 39.130 0.00 0.00 0.00 1.40
787 2400 3.059884 CTGTTGAAAGAGCTGAGCGTTA 58.940 45.455 0.00 0.00 0.00 3.18
788 2401 1.869767 CTGTTGAAAGAGCTGAGCGTT 59.130 47.619 0.00 0.00 0.00 4.84
789 2402 1.202580 ACTGTTGAAAGAGCTGAGCGT 60.203 47.619 0.00 0.00 0.00 5.07
790 2403 1.458827 GACTGTTGAAAGAGCTGAGCG 59.541 52.381 0.00 0.00 0.00 5.03
792 2405 5.295292 TCTTTTGACTGTTGAAAGAGCTGAG 59.705 40.000 12.55 0.00 35.22 3.35
803 3733 6.090763 GTGTTTCCCTTTTCTTTTGACTGTTG 59.909 38.462 0.00 0.00 0.00 3.33
839 3769 0.100503 AATAATTTGAGGCCGTGCGC 59.899 50.000 0.00 0.00 0.00 6.09
840 3770 1.132262 ACAATAATTTGAGGCCGTGCG 59.868 47.619 0.00 0.00 36.64 5.34
896 3836 3.807538 CATGGCTGCCACTGCGAC 61.808 66.667 25.99 0.00 41.78 5.19
979 3937 9.754382 CTCCATTGTTATTATTTCATTTCTGGG 57.246 33.333 0.00 0.00 0.00 4.45
1040 4008 3.780173 GCTTCGCCTCCTCCTGCT 61.780 66.667 0.00 0.00 0.00 4.24
1041 4009 4.847444 GGCTTCGCCTCCTCCTGC 62.847 72.222 0.00 0.00 46.69 4.85
1074 4042 1.069668 TCCTGCATCATCATCACCTCG 59.930 52.381 0.00 0.00 0.00 4.63
1188 4177 2.610859 TTGAGGGGGAGGAGGCAC 60.611 66.667 0.00 0.00 0.00 5.01
1233 4222 3.053245 TGGTAAGAGAAGAGGAGAGGAGG 60.053 52.174 0.00 0.00 0.00 4.30
1251 4240 5.426509 ACAATCATTGGATGACTCTCTGGTA 59.573 40.000 1.58 0.00 43.01 3.25
1261 4250 5.466058 GCAAACAAACACAATCATTGGATGA 59.534 36.000 1.58 0.00 44.55 2.92
1262 4251 5.334260 GGCAAACAAACACAATCATTGGATG 60.334 40.000 1.58 0.00 32.92 3.51
1263 4252 4.756135 GGCAAACAAACACAATCATTGGAT 59.244 37.500 1.58 0.00 34.43 3.41
1264 4253 4.125703 GGCAAACAAACACAATCATTGGA 58.874 39.130 1.58 0.00 34.12 3.53
1265 4254 3.875727 TGGCAAACAAACACAATCATTGG 59.124 39.130 1.58 0.00 34.12 3.16
1266 4255 5.293814 TCTTGGCAAACAAACACAATCATTG 59.706 36.000 0.00 0.00 38.91 2.82
1267 4256 5.426504 TCTTGGCAAACAAACACAATCATT 58.573 33.333 0.00 0.00 38.91 2.57
1274 4263 2.788786 CGTGATCTTGGCAAACAAACAC 59.211 45.455 0.00 6.94 38.91 3.32
1400 4395 3.129462 GCTTGCAAGAGGATAGGGAAAAC 59.871 47.826 30.39 2.91 0.00 2.43
1402 4397 2.308570 TGCTTGCAAGAGGATAGGGAAA 59.691 45.455 30.39 0.00 0.00 3.13
1404 4399 1.487976 CTGCTTGCAAGAGGATAGGGA 59.512 52.381 30.39 1.09 0.00 4.20
1405 4400 1.487976 TCTGCTTGCAAGAGGATAGGG 59.512 52.381 30.39 9.31 0.00 3.53
1406 4401 2.996249 TCTGCTTGCAAGAGGATAGG 57.004 50.000 30.39 10.28 0.00 2.57
1409 4404 4.583489 CCATAATTCTGCTTGCAAGAGGAT 59.417 41.667 30.39 19.44 0.00 3.24
1410 4405 3.949754 CCATAATTCTGCTTGCAAGAGGA 59.050 43.478 30.39 21.48 0.00 3.71
1411 4406 3.067742 CCCATAATTCTGCTTGCAAGAGG 59.932 47.826 30.39 19.63 0.00 3.69
1412 4407 3.949754 TCCCATAATTCTGCTTGCAAGAG 59.050 43.478 30.39 21.72 0.00 2.85
1416 4411 3.370840 ACTCCCATAATTCTGCTTGCA 57.629 42.857 0.00 0.00 0.00 4.08
1444 4440 4.382577 GGGTTTTCTGGTTCTTGCTGAAAA 60.383 41.667 0.00 0.00 36.30 2.29
1447 4443 2.091885 AGGGTTTTCTGGTTCTTGCTGA 60.092 45.455 0.00 0.00 0.00 4.26
1449 4445 2.175715 AGAGGGTTTTCTGGTTCTTGCT 59.824 45.455 0.00 0.00 0.00 3.91
1451 4447 4.038042 GGAAAGAGGGTTTTCTGGTTCTTG 59.962 45.833 0.00 0.00 37.26 3.02
1480 4540 8.081025 CAAAGAAATCCTTCCTCTCAAAAAGAG 58.919 37.037 0.00 0.00 41.81 2.85
1481 4541 7.470563 GCAAAGAAATCCTTCCTCTCAAAAAGA 60.471 37.037 0.00 0.00 33.02 2.52
1482 4542 6.644181 GCAAAGAAATCCTTCCTCTCAAAAAG 59.356 38.462 0.00 0.00 33.02 2.27
1483 4543 6.098124 TGCAAAGAAATCCTTCCTCTCAAAAA 59.902 34.615 0.00 0.00 33.02 1.94
2316 5658 8.081208 CATCTAACTTAAGGTGCAGATACATG 57.919 38.462 2.38 0.00 32.58 3.21
2478 5863 4.511527 CTGCATTGGTACTGATCAGAAGT 58.488 43.478 29.27 10.49 0.00 3.01
2492 5877 2.163010 CCTCACTTGTTAGCTGCATTGG 59.837 50.000 1.02 0.00 0.00 3.16
2505 5890 3.865446 TCACACAGCATATCCTCACTTG 58.135 45.455 0.00 0.00 0.00 3.16
2516 9608 3.290710 ACCTGAAACTTTCACACAGCAT 58.709 40.909 0.00 0.00 35.46 3.79
2534 9626 5.700402 AGCTCTAACCATGAACATAACCT 57.300 39.130 0.00 0.00 0.00 3.50
2586 10277 6.201425 GGGTTTTCCATCGTTAAAAAGAAACC 59.799 38.462 0.00 0.00 42.91 3.27
2609 10300 0.905357 AACGGAGGAGATGAAGTGGG 59.095 55.000 0.00 0.00 0.00 4.61
2625 10316 1.323534 CGACGCCTCCAAATAAGAACG 59.676 52.381 0.00 0.00 0.00 3.95
2631 10322 0.174845 CTCACCGACGCCTCCAAATA 59.825 55.000 0.00 0.00 0.00 1.40
2645 10336 8.459635 GGTCATTTTAGAGAATTTAACCTCACC 58.540 37.037 0.00 0.00 32.07 4.02
2662 10353 6.667414 ACATGCCTAAAATCTGGGTCATTTTA 59.333 34.615 0.00 0.00 35.52 1.52
2681 10502 1.000274 GTCAAACCCACTCAACATGCC 60.000 52.381 0.00 0.00 0.00 4.40
2740 10561 9.195411 TGTCACAAAATTTCAGATTTATCTTGC 57.805 29.630 0.00 0.00 34.22 4.01
2744 10565 9.474920 TGGTTGTCACAAAATTTCAGATTTATC 57.525 29.630 0.00 0.00 0.00 1.75
2782 10609 1.669604 TTTTCACACACCTAGCGCAA 58.330 45.000 11.47 0.00 0.00 4.85
2794 10621 8.568794 TGTCGAAATACCACATAAATTTTCACA 58.431 29.630 0.00 0.00 0.00 3.58
2822 10649 2.469465 TTTTGCCAGGAGCTCCTCGG 62.469 60.000 33.06 32.08 46.65 4.63
2887 10716 1.036707 AACATCGGAGGAGCTCTAGC 58.963 55.000 14.64 3.09 42.49 3.42
2934 10774 0.798159 CAACATGCTTGAGTGCGCTA 59.202 50.000 9.73 0.00 35.36 4.26
2935 10775 1.577922 CAACATGCTTGAGTGCGCT 59.422 52.632 9.73 0.00 35.36 5.92
2936 10776 1.443194 CCAACATGCTTGAGTGCGC 60.443 57.895 0.00 0.00 35.36 6.09
2937 10777 0.311790 AACCAACATGCTTGAGTGCG 59.688 50.000 6.60 2.06 35.36 5.34
2938 10778 1.067516 ACAACCAACATGCTTGAGTGC 59.932 47.619 6.60 0.00 0.00 4.40
2939 10779 2.358582 TGACAACCAACATGCTTGAGTG 59.641 45.455 6.60 4.12 0.00 3.51
2940 10780 2.358898 GTGACAACCAACATGCTTGAGT 59.641 45.455 6.60 0.00 0.00 3.41
2941 10781 2.602933 CGTGACAACCAACATGCTTGAG 60.603 50.000 6.60 0.00 0.00 3.02
2942 10782 1.333308 CGTGACAACCAACATGCTTGA 59.667 47.619 6.60 0.00 0.00 3.02
2997 10842 4.862574 TCGACCGATGAACAGTAAATTCAG 59.137 41.667 0.00 0.00 39.36 3.02
3032 10878 2.350772 GGATTTTGAGCACGTTGACCTG 60.351 50.000 0.00 0.00 0.00 4.00
3033 10879 1.880027 GGATTTTGAGCACGTTGACCT 59.120 47.619 0.00 0.00 0.00 3.85
3060 10916 2.560981 CAAAACCGGATAAGTTTGGCCT 59.439 45.455 9.46 0.00 37.50 5.19
3062 10918 3.504520 TCTCAAAACCGGATAAGTTTGGC 59.495 43.478 9.46 0.00 37.50 4.52
3113 10970 6.749036 AAATATAGACTTGGTCCCTCGAAT 57.251 37.500 0.00 0.00 32.18 3.34
3116 10973 5.527582 CCAAAAATATAGACTTGGTCCCTCG 59.472 44.000 0.00 0.00 34.77 4.63
3134 10991 2.103941 GGCATCACAAGTTCCCCAAAAA 59.896 45.455 0.00 0.00 0.00 1.94
3149 11006 7.048629 TGAGAAAAGTATGTTTTTGGCATCA 57.951 32.000 0.00 0.00 0.00 3.07
3151 11008 8.729805 TTTTGAGAAAAGTATGTTTTTGGCAT 57.270 26.923 0.00 0.00 0.00 4.40
3152 11009 8.553459 TTTTTGAGAAAAGTATGTTTTTGGCA 57.447 26.923 0.00 0.00 31.41 4.92
3200 11057 7.284489 TGGAGTTCAGTTTAATATGTTATGGGC 59.716 37.037 0.00 0.00 0.00 5.36
3201 11058 8.746052 TGGAGTTCAGTTTAATATGTTATGGG 57.254 34.615 0.00 0.00 0.00 4.00
3226 11083 8.643324 ACCTTCTTGCGTATCTCTTAAGATTAT 58.357 33.333 5.44 5.74 42.39 1.28
3244 14421 2.223340 GCACTGTGTTCACACCTTCTTG 60.223 50.000 9.86 0.00 45.88 3.02
3248 14425 1.065491 TGAGCACTGTGTTCACACCTT 60.065 47.619 21.16 0.00 45.88 3.50
3253 14430 2.231215 ACTCTGAGCACTGTGTTCAC 57.769 50.000 21.16 6.09 32.63 3.18
3254 14431 3.222603 TCTACTCTGAGCACTGTGTTCA 58.777 45.455 23.01 23.01 35.22 3.18
3261 14438 3.712016 TGTCTCTCTACTCTGAGCACT 57.288 47.619 4.19 0.00 34.29 4.40
3266 14443 5.247337 TGTCTCTCTTGTCTCTCTACTCTGA 59.753 44.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.