AutoCloner

Multiple sequence alignment - TraesCS3D01G016900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G016900	chr3D	100.000	3022	0	0	1	3022	5816642	5813621	0.000000e+00	5581.0
1	TraesCS3D01G016900	chr3D	89.362	47	5	0	1167	1213	29308925	29308879	3.250000e-05	60.2
2	TraesCS3D01G016900	chr3B	93.071	1703	78	18	537	2206	11923955	11925650	0.000000e+00	2455.0
3	TraesCS3D01G016900	chr3B	90.988	577	36	7	2460	3022	11927332	11927906	0.000000e+00	763.0
4	TraesCS3D01G016900	chr3B	88.727	550	42	18	2295	2832	11959419	11958878	0.000000e+00	654.0
5	TraesCS3D01G016900	chr3B	86.412	471	48	9	2	464	11923343	11923805	4.500000e-138	501.0
6	TraesCS3D01G016900	chrUn	91.342	1721	90	18	538	2206	36300615	36298902	0.000000e+00	2298.0
7	TraesCS3D01G016900	chrUn	90.800	1250	84	11	1797	3022	35513625	35514867	0.000000e+00	1642.0
8	TraesCS3D01G016900	chrUn	91.334	577	34	7	2460	3022	36297106	36296532	0.000000e+00	774.0
9	TraesCS3D01G016900	chrUn	88.788	553	42	18	2292	2832	36476637	36477181	0.000000e+00	660.0
10	TraesCS3D01G016900	chrUn	88.269	520	49	6	5	520	36303958	36303447	1.990000e-171	612.0
11	TraesCS3D01G016900	chrUn	88.269	520	49	6	5	520	325223578	325223067	1.990000e-171	612.0
12	TraesCS3D01G016900	chrUn	92.558	430	24	5	1085	1506	476365717	476365288	7.160000e-171	610.0
13	TraesCS3D01G016900	chrUn	87.924	472	40	8	6	467	35513126	35513590	9.530000e-150	540.0
14	TraesCS3D01G016900	chrUn	93.575	358	23	0	2665	3022	32300198	32299841	4.430000e-148	534.0
15	TraesCS3D01G016900	chrUn	87.561	410	40	5	61	467	36301125	36300724	5.900000e-127	464.0
16	TraesCS3D01G016900	chrUn	89.831	354	26	4	536	889	36317887	36318230	2.140000e-121	446.0
17	TraesCS3D01G016900	chrUn	87.611	339	34	5	132	467	36317448	36317781	1.310000e-103	387.0
18	TraesCS3D01G016900	chrUn	93.137	204	14	0	2819	3022	267482407	267482610	1.760000e-77	300.0
19	TraesCS3D01G016900	chrUn	94.444	72	4	0	2	73	36317380	36317451	8.860000e-21	111.0
20	TraesCS3D01G016900	chrUn	95.122	41	2	0	537	577	36303375	36303335	6.990000e-07	65.8
21	TraesCS3D01G016900	chrUn	95.122	41	2	0	537	577	325222995	325222955	6.990000e-07	65.8
22	TraesCS3D01G016900	chr7D	87.613	1881	123	42	747	2563	42197400	42195566	0.000000e+00	2082.0
23	TraesCS3D01G016900	chr7D	94.240	434	23	2	2589	3022	42195566	42195135	0.000000e+00	662.0
24	TraesCS3D01G016900	chr7D	90.948	232	19	1	238	467	42198153	42197922	8.140000e-81	311.0
25	TraesCS3D01G016900	chr7D	94.301	193	10	1	537	728	42197812	42197620	8.190000e-76	294.0
26	TraesCS3D01G016900	chr7D	95.918	98	4	0	1	98	42199875	42199778	3.120000e-35	159.0
27	TraesCS3D01G016900	chr3A	90.782	1508	88	17	686	2156	15429025	15430518	0.000000e+00	1967.0
28	TraesCS3D01G016900	chr3A	91.004	1345	89	17	836	2156	12177445	12176109	0.000000e+00	1784.0
29	TraesCS3D01G016900	chr3A	88.128	876	84	19	2159	3022	15430555	15431422	0.000000e+00	1024.0
30	TraesCS3D01G016900	chr3A	88.497	539	46	10	3	533	15428345	15428875	3.290000e-179	638.0
31	TraesCS3D01G016900	chr3A	93.765	417	26	0	2606	3022	12175370	12174954	7.110000e-176	627.0
32	TraesCS3D01G016900	chr3A	92.655	177	11	2	2437	2613	12175873	12175699	1.390000e-63	254.0
33	TraesCS3D01G016900	chr3A	90.957	188	10	4	561	741	12179526	12179339	2.330000e-61	246.0
34	TraesCS3D01G016900	chr3A	94.231	104	4	1	738	841	12179034	12178933	1.120000e-34	158.0
35	TraesCS3D01G016900	chr3A	95.455	88	1	1	537	621	15428940	15429027	1.460000e-28	137.0
36	TraesCS3D01G016900	chr3A	86.792	53	7	0	1161	1213	38621385	38621437	3.250000e-05	60.2
37	TraesCS3D01G016900	chr7B	82.154	650	110	3	1383	2026	28686793	28687442	1.220000e-153	553.0
38	TraesCS3D01G016900	chr7B	91.837	49	4	0	2974	3022	749929571	749929619	5.410000e-08	69.4
39	TraesCS3D01G016900	chr4D	78.159	728	138	14	1319	2030	363106111	363106833	7.690000e-121	444.0
40	TraesCS3D01G016900	chr5D	80.233	602	107	3	1432	2030	72960623	72961215	2.770000e-120	442.0
41	TraesCS3D01G016900	chr5D	79.900	602	114	6	1433	2030	373112096	373111498	4.630000e-118	435.0
42	TraesCS3D01G016900	chr2D	78.212	716	133	9	1328	2030	85803344	85804049	1.290000e-118	436.0
43	TraesCS3D01G016900	chr6D	83.090	343	43	10	151	484	345313879	345314215	6.330000e-77	298.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G016900	chr3D	5813621	5816642	3021	True	5581.000000	5581	100.000000	1	3022	1	chr3D.!!$R1	3021
1	TraesCS3D01G016900	chr3B	11923343	11927906	4563	False	1239.666667	2455	90.157000	2	3022	3	chr3B.!!$F1	3020
2	TraesCS3D01G016900	chr3B	11958878	11959419	541	True	654.000000	654	88.727000	2295	2832	1	chr3B.!!$R1	537
3	TraesCS3D01G016900	chrUn	35513126	35514867	1741	False	1091.000000	1642	89.362000	6	3022	2	chrUn.!!$F3	3016
4	TraesCS3D01G016900	chrUn	36296532	36303958	7426	True	842.760000	2298	90.725600	5	3022	5	chrUn.!!$R3	3017
5	TraesCS3D01G016900	chrUn	36476637	36477181	544	False	660.000000	660	88.788000	2292	2832	1	chrUn.!!$F1	540
6	TraesCS3D01G016900	chrUn	325222955	325223578	623	True	338.900000	612	91.695500	5	577	2	chrUn.!!$R4	572
7	TraesCS3D01G016900	chrUn	36317380	36318230	850	False	314.666667	446	90.628667	2	889	3	chrUn.!!$F4	887
8	TraesCS3D01G016900	chr7D	42195135	42199875	4740	True	701.600000	2082	92.604000	1	3022	5	chr7D.!!$R1	3021
9	TraesCS3D01G016900	chr3A	15428345	15431422	3077	False	941.500000	1967	90.715500	3	3022	4	chr3A.!!$F2	3019
10	TraesCS3D01G016900	chr3A	12174954	12179526	4572	True	613.800000	1784	92.522400	561	3022	5	chr3A.!!$R1	2461
11	TraesCS3D01G016900	chr7B	28686793	28687442	649	False	553.000000	553	82.154000	1383	2026	1	chr7B.!!$F1	643
12	TraesCS3D01G016900	chr4D	363106111	363106833	722	False	444.000000	444	78.159000	1319	2030	1	chr4D.!!$F1	711
13	TraesCS3D01G016900	chr5D	72960623	72961215	592	False	442.000000	442	80.233000	1432	2030	1	chr5D.!!$F1	598
14	TraesCS3D01G016900	chr5D	373111498	373112096	598	True	435.000000	435	79.900000	1433	2030	1	chr5D.!!$R1	597
15	TraesCS3D01G016900	chr2D	85803344	85804049	705	False	436.000000	436	78.212000	1328	2030	1	chr2D.!!$F1	702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
928	7165	1.005228	TCCTTCCTCCTCCGGTCTTA	58.995	55.0	0.0	0.0	0.0	2.1	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2738	11195	1.068753	CCAGCAGAGCATACCCGAG	59.931	63.158	0.0	0.0	0.0	4.63	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
205	526	2.361119	GCCATCTCATCATGCAACATGT	59.639	45.455	7.40	0.00	0.00	3.21
291	1790	4.778534	ACATGCATGGAAAAAGACTCAG	57.221	40.909	29.41	0.42	0.00	3.35
301	1800	4.276926	GGAAAAAGACTCAGCTCAACATGT	59.723	41.667	0.00	0.00	0.00	3.21
306	1805	7.516198	AAAGACTCAGCTCAACATGTAAATT	57.484	32.000	0.00	0.00	0.00	1.82
311	1810	5.221880	TCAGCTCAACATGTAAATTTGCAC	58.778	37.500	11.35	0.00	0.00	4.57
320	1819	6.692486	ACATGTAAATTTGCACGGGAATTTA	58.308	32.000	11.35	9.08	36.92	1.40
328	1827	5.554822	TTGCACGGGAATTTACATTCTAC	57.445	39.130	0.00	0.00	39.17	2.59
444	1951	7.390440	TCACGTTTCATACAAGGAATCTCATTT	59.610	33.333	0.00	0.00	0.00	2.32
455	1962	8.859090	ACAAGGAATCTCATTTAAATGTGTTGA	58.141	29.630	23.95	17.95	37.65	3.18
495	4803	6.152323	ACGTGCGGGTATCATCTAGTTAATAT	59.848	38.462	0.00	0.00	0.00	1.28
755	5483	6.466885	ACACTTTAGTCTGTTCACTGTAGT	57.533	37.500	0.00	0.00	0.00	2.73
756	5484	7.578310	ACACTTTAGTCTGTTCACTGTAGTA	57.422	36.000	0.00	0.00	0.00	1.82
757	5485	7.424001	ACACTTTAGTCTGTTCACTGTAGTAC	58.576	38.462	0.00	0.00	0.00	2.73
790	5519	2.115910	CCAAGGACCAAGCAGGCA	59.884	61.111	0.00	0.00	43.14	4.75
805	5534	3.577848	AGCAGGCAACACCAAATTTATGA	59.422	39.130	8.27	0.00	43.14	2.15
921	7158	2.091333	AGAGTCTCATCCTTCCTCCTCC	60.091	54.545	1.94	0.00	0.00	4.30
928	7165	1.005228	TCCTTCCTCCTCCGGTCTTA	58.995	55.000	0.00	0.00	0.00	2.10
933	7170	3.399952	TCCTCCTCCGGTCTTATCTTT	57.600	47.619	0.00	0.00	0.00	2.52
1164	7461	0.743097	GGATTGAGGCCAACATGCTC	59.257	55.000	5.01	2.78	34.72	4.26
1217	7514	1.966451	CCGTCTTCCAGGTTGGTGC	60.966	63.158	0.00	0.00	39.03	5.01
1235	7535	3.623510	GGTGCAGTAGAGCAATTTCTACC	59.376	47.826	11.92	0.00	46.95	3.18
1236	7536	4.253685	GTGCAGTAGAGCAATTTCTACCA	58.746	43.478	11.92	3.93	46.95	3.25
1238	7538	4.877823	TGCAGTAGAGCAATTTCTACCATG	59.122	41.667	11.92	7.54	46.95	3.66
1239	7539	5.118990	GCAGTAGAGCAATTTCTACCATGA	58.881	41.667	11.92	0.00	46.95	3.07
1240	7540	5.762218	GCAGTAGAGCAATTTCTACCATGAT	59.238	40.000	11.92	0.00	46.95	2.45
1300	7607	3.062909	TGCACGCACGGATTTTAGTATTC	59.937	43.478	0.00	0.00	0.00	1.75
1511	7831	1.000506	GTCACCTACCACAAGCTCGAA	59.999	52.381	0.00	0.00	0.00	3.71
1644	7964	0.924777	CGTGCACGTTGTTCAGTACA	59.075	50.000	30.50	0.00	34.12	2.90
2026	8349	6.373005	TGACAAGATCACCTCCTAAATGAA	57.627	37.500	0.00	0.00	29.99	2.57
2036	8359	6.100279	TCACCTCCTAAATGAATCTGCTATGT	59.900	38.462	0.00	0.00	0.00	2.29
2043	8366	4.550076	ATGAATCTGCTATGTCTAGGGC	57.450	45.455	0.00	0.00	0.00	5.19
2050	8373	4.141135	TCTGCTATGTCTAGGGCTCTACTT	60.141	45.833	0.00	0.00	0.00	2.24
2085	8411	6.283544	AGTAAGGCTTAGTCTAGTTTGGTC	57.716	41.667	7.33	0.00	0.00	4.02
2094	8420	9.872721	GCTTAGTCTAGTTTGGTCTAATTTAGT	57.127	33.333	3.45	0.00	0.00	2.24
2119	8445	9.353999	GTTTAACAGAATGATGGATTTTGGTAC	57.646	33.333	0.00	0.00	39.69	3.34
2120	8446	8.877864	TTAACAGAATGATGGATTTTGGTACT	57.122	30.769	0.00	0.00	39.69	2.73
2121	8447	9.967451	TTAACAGAATGATGGATTTTGGTACTA	57.033	29.630	0.00	0.00	39.69	1.82
2144	8471	3.674281	GCATGCATCAATTCGTTCAACAA	59.326	39.130	14.21	0.00	0.00	2.83
2168	8531	4.483311	GGACGAGTACTTGTTAGTTCCAG	58.517	47.826	17.01	0.00	35.78	3.86
2199	8562	9.975218	ATTAGTACATGGAAGAGGTATTTTGTT	57.025	29.630	0.00	0.00	0.00	2.83
2213	8612	6.437162	AGGTATTTTGTTGCTGTTGGATGTAT	59.563	34.615	0.00	0.00	0.00	2.29
2305	8706	1.135603	CGCATTCACAAGACCACCATG	60.136	52.381	0.00	0.00	0.00	3.66
2340	8741	3.628646	AATCTCGCTGCCACCACCC	62.629	63.158	0.00	0.00	0.00	4.61
2371	8772	6.160664	TGACCGAATTCGACTAAATTGTTC	57.839	37.500	28.76	9.75	43.02	3.18
2373	8774	6.090358	TGACCGAATTCGACTAAATTGTTCTC	59.910	38.462	28.76	4.95	43.02	2.87
2415	8816	6.150307	TGTGTGGTTTGGTGAATGATATGTAC	59.850	38.462	0.00	0.00	0.00	2.90
2465	10573	1.518325	TTGTCAGGCCACGTTACATG	58.482	50.000	5.01	0.00	0.00	3.21
2554	10663	2.251818	CCATCATACCCTCTCATCCGT	58.748	52.381	0.00	0.00	0.00	4.69
2738	11195	6.890979	ATTATTGGCAGCTATCTTTCCTTC	57.109	37.500	0.00	0.00	0.00	3.46
2846	11305	1.975660	TCCCCACTAAAACACACAGC	58.024	50.000	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	1.447140	GTGCTGGGCGTACGATGAA	60.447	57.895	21.65	0.00	0.00	2.57
279	1777	5.429957	ACATGTTGAGCTGAGTCTTTTTC	57.570	39.130	0.00	0.00	0.00	2.29
291	1790	3.364621	CCGTGCAAATTTACATGTTGAGC	59.635	43.478	2.30	1.06	0.00	4.26
301	1800	7.607250	AGAATGTAAATTCCCGTGCAAATTTA	58.393	30.769	9.08	9.08	36.66	1.40
306	1805	5.123186	CAGTAGAATGTAAATTCCCGTGCAA	59.877	40.000	1.75	0.00	0.00	4.08
311	1810	8.833231	ATATCACAGTAGAATGTAAATTCCCG	57.167	34.615	1.75	0.00	0.00	5.14
407	1908	8.667987	TTGTATGAAACGTGAATATTTTGAGC	57.332	30.769	0.00	0.00	0.00	4.26
444	1951	5.743026	TGCGAGAGTTTTCAACACATTTA	57.257	34.783	0.00	0.00	0.00	1.40
455	1962	1.531058	GCACGTTGTTGCGAGAGTTTT	60.531	47.619	0.00	0.00	35.59	2.43
512	4820	9.754382	TTCCAAATGTAATAGAGACGGTATTAC	57.246	33.333	10.71	10.71	41.09	1.89
639	5020	9.986833	ATCAAACTTTGCAAATTTAGTTTTCAC	57.013	25.926	19.49	0.00	38.41	3.18
755	5483	1.009060	TGGCAGGTGGGGAAGATAGTA	59.991	52.381	0.00	0.00	0.00	1.82
756	5484	0.253160	TGGCAGGTGGGGAAGATAGT	60.253	55.000	0.00	0.00	0.00	2.12
757	5485	0.918983	TTGGCAGGTGGGGAAGATAG	59.081	55.000	0.00	0.00	0.00	2.08
790	5519	6.339587	ACGAACCATCATAAATTTGGTGTT	57.660	33.333	0.00	0.00	42.85	3.32
805	5534	3.632145	AGTCAAAGAGCAAAACGAACCAT	59.368	39.130	0.00	0.00	0.00	3.55
921	7158	2.295253	ACGGCTGAAAGATAAGACCG	57.705	50.000	0.00	0.00	44.49	4.79
928	7165	2.840974	CGGTGAACGGCTGAAAGAT	58.159	52.632	0.00	0.00	39.42	2.40
953	7220	3.306641	CCTGGAACAAACCTCTCTCTCTG	60.307	52.174	0.00	0.00	38.70	3.35
1100	7385	4.351938	CGTGTCCCGACGCCTCAA	62.352	66.667	2.94	0.00	38.53	3.02
1164	7461	2.202987	GAGCAGATGGGGCAGTCG	60.203	66.667	0.00	0.00	0.00	4.18
1217	7514	7.496920	TCAATCATGGTAGAAATTGCTCTACTG	59.503	37.037	14.19	8.08	44.86	2.74
1233	7533	4.254039	TCATGGGATGTTCAATCATGGT	57.746	40.909	0.00	0.00	36.72	3.55
1234	7534	4.647853	AGTTCATGGGATGTTCAATCATGG	59.352	41.667	0.00	0.00	36.72	3.66
1235	7535	5.358725	TCAGTTCATGGGATGTTCAATCATG	59.641	40.000	0.00	0.00	37.23	3.07
1236	7536	5.512298	TCAGTTCATGGGATGTTCAATCAT	58.488	37.500	0.00	0.00	0.00	2.45
1238	7538	5.902613	TTCAGTTCATGGGATGTTCAATC	57.097	39.130	0.00	0.00	0.00	2.67
1239	7539	5.066893	CGATTCAGTTCATGGGATGTTCAAT	59.933	40.000	0.00	0.00	0.00	2.57
1240	7540	4.395854	CGATTCAGTTCATGGGATGTTCAA	59.604	41.667	0.00	0.00	0.00	2.69
1300	7607	2.438800	TCGAGGGAGGGAAGTAAGAG	57.561	55.000	0.00	0.00	0.00	2.85
1511	7831	2.356313	CACGCGCTCTTGTGGTCT	60.356	61.111	5.73	0.00	32.47	3.85
1601	7921	2.184322	GAATGGACGGCGCTGAGA	59.816	61.111	25.98	6.11	0.00	3.27
1633	7953	1.946768	GCACCTTGCTGTACTGAACAA	59.053	47.619	3.61	0.00	40.96	2.83
1817	8137	2.344500	CCGTTCGCCCACACCTTA	59.656	61.111	0.00	0.00	0.00	2.69
2026	8349	3.541242	AGAGCCCTAGACATAGCAGAT	57.459	47.619	0.00	0.00	0.00	2.90
2094	8420	9.308000	AGTACCAAAATCCATCATTCTGTTAAA	57.692	29.630	0.00	0.00	0.00	1.52
2102	8428	6.239120	GCATGCTAGTACCAAAATCCATCATT	60.239	38.462	11.37	0.00	0.00	2.57
2119	8445	4.541085	TGAACGAATTGATGCATGCTAG	57.459	40.909	20.33	0.00	0.00	3.42
2120	8446	4.155644	TGTTGAACGAATTGATGCATGCTA	59.844	37.500	20.33	5.73	0.00	3.49
2121	8447	3.057386	TGTTGAACGAATTGATGCATGCT	60.057	39.130	20.33	4.11	0.00	3.79
2144	8471	3.057946	GGAACTAACAAGTACTCGTCCGT	60.058	47.826	0.00	0.00	0.00	4.69
2146	8473	4.483311	CTGGAACTAACAAGTACTCGTCC	58.517	47.826	0.00	0.00	0.00	4.79
2149	8476	3.909430	TGCTGGAACTAACAAGTACTCG	58.091	45.455	0.00	0.00	0.00	4.18
2168	8531	5.615289	ACCTCTTCCATGTACTAATCATGC	58.385	41.667	0.00	0.00	40.63	4.06
2199	8562	4.641541	CCAAAGATCATACATCCAACAGCA	59.358	41.667	0.00	0.00	0.00	4.41
2213	8612	3.965379	TTACGTGCTACCCAAAGATCA	57.035	42.857	0.00	0.00	0.00	2.92
2276	8677	2.667969	TCTTGTGAATGCGATCGTGAAG	59.332	45.455	17.81	8.37	0.00	3.02
2305	8706	2.662596	TGACATGCGGGTCAGACC	59.337	61.111	11.70	11.70	42.56	3.85
2340	8741	3.741344	AGTCGAATTCGGTCAAGTTGAAG	59.259	43.478	26.47	5.22	40.29	3.02
2371	8772	3.060940	CACAGCTAATATTGTCGTGCGAG	60.061	47.826	0.00	0.00	0.00	5.03
2373	8774	2.603110	ACACAGCTAATATTGTCGTGCG	59.397	45.455	0.00	0.00	0.00	5.34
2415	8816	2.065993	AGTCATGGAACTTGTCGTCG	57.934	50.000	0.00	0.00	0.00	5.12
2520	10629	5.712917	GGGTATGATGGTCCAGTTAAAAACA	59.287	40.000	0.00	0.00	0.00	2.83
2521	10630	5.949952	AGGGTATGATGGTCCAGTTAAAAAC	59.050	40.000	0.00	0.00	0.00	2.43
2554	10663	6.051717	GCTTGAGATTAAGATGTGCCTCTTA	58.948	40.000	0.00	0.00	36.82	2.10
2685	11142	5.681337	TGCTGATAATGTTCGTTTTGACA	57.319	34.783	0.00	0.00	0.00	3.58
2738	11195	1.068753	CCAGCAGAGCATACCCGAG	59.931	63.158	0.00	0.00	0.00	4.63
2846	11305	4.568359	CCTTCATGGTCATTTCTAGTCACG	59.432	45.833	0.00	0.00	0.00	4.35
2852	11311	4.079787	CCCCTTCCTTCATGGTCATTTCTA	60.080	45.833	0.00	0.00	37.07	2.10
2859	11318	1.488393	CTCTCCCCTTCCTTCATGGTC	59.512	57.143	0.00	0.00	37.07	4.02
2896	11355	2.266055	CTTCACCTCCTCGGCACC	59.734	66.667	0.00	0.00	35.61	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.