Multiple sequence alignment - TraesCS3D01G016000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G016000 chr3D 100.000 4880 0 0 1 4880 5656277 5661156 0.000000e+00 9012.0
1 TraesCS3D01G016000 chr3D 84.680 1064 155 8 2319 3378 5658442 5659501 0.000000e+00 1055.0
2 TraesCS3D01G016000 chr3D 84.680 1064 155 8 2166 3225 5658595 5659654 0.000000e+00 1055.0
3 TraesCS3D01G016000 chr3D 84.130 920 144 2 2166 3084 5658748 5659666 0.000000e+00 889.0
4 TraesCS3D01G016000 chr3D 83.067 313 43 7 1158 1464 5632123 5631815 4.810000e-70 276.0
5 TraesCS3D01G016000 chr3D 95.868 121 5 0 1645 1765 5657828 5657948 3.850000e-46 196.0
6 TraesCS3D01G016000 chr3D 95.868 121 5 0 1552 1672 5657921 5658041 3.850000e-46 196.0
7 TraesCS3D01G016000 chr3D 79.323 266 49 5 1976 2238 5614500 5614238 1.080000e-41 182.0
8 TraesCS3D01G016000 chr3D 86.813 91 4 5 4494 4583 41616608 41616691 1.450000e-15 95.3
9 TraesCS3D01G016000 chr3B 90.723 2447 164 31 2472 4880 12149643 12152064 0.000000e+00 3203.0
10 TraesCS3D01G016000 chr3B 92.334 2009 98 30 2910 4880 12127677 12129667 0.000000e+00 2806.0
11 TraesCS3D01G016000 chr3B 93.498 1861 81 7 2609 4468 27889630 27891451 0.000000e+00 2730.0
12 TraesCS3D01G016000 chr3B 87.629 2134 204 35 2472 4585 12289584 12287491 0.000000e+00 2423.0
13 TraesCS3D01G016000 chr3B 90.840 1452 101 5 1645 3084 12290097 12288666 0.000000e+00 1916.0
14 TraesCS3D01G016000 chr3B 95.752 1130 40 6 548 1672 12148103 12149229 0.000000e+00 1814.0
15 TraesCS3D01G016000 chr3B 88.446 1454 136 13 1645 3084 12149109 12150544 0.000000e+00 1725.0
16 TraesCS3D01G016000 chr3B 95.096 1040 47 4 634 1672 27879974 27881010 0.000000e+00 1635.0
17 TraesCS3D01G016000 chr3B 96.918 649 18 2 548 1195 12291498 12290851 0.000000e+00 1086.0
18 TraesCS3D01G016000 chr3B 97.505 481 12 0 1192 1672 12290457 12289977 0.000000e+00 822.0
19 TraesCS3D01G016000 chr3B 94.855 447 9 6 68 503 12292059 12291616 0.000000e+00 686.0
20 TraesCS3D01G016000 chr3B 93.065 447 8 9 68 503 12147551 12147985 2.480000e-177 632.0
21 TraesCS3D01G016000 chr3B 85.382 602 86 2 2789 3389 12149654 12150254 1.490000e-174 623.0
22 TraesCS3D01G016000 chr3B 83.779 598 97 0 2791 3388 12289571 12288974 7.090000e-158 568.0
23 TraesCS3D01G016000 chr3B 87.436 390 24 16 4507 4871 27891448 27891837 4.510000e-115 425.0
24 TraesCS3D01G016000 chr3B 82.353 238 25 11 4630 4854 12110626 12110393 1.790000e-44 191.0
25 TraesCS3D01G016000 chr3B 89.706 136 12 2 4619 4753 12158884 12159018 6.490000e-39 172.0
26 TraesCS3D01G016000 chrUn 90.839 2325 155 32 2472 4772 35083612 35085902 0.000000e+00 3061.0
27 TraesCS3D01G016000 chrUn 92.285 2009 99 29 2910 4880 252878891 252876901 0.000000e+00 2800.0
28 TraesCS3D01G016000 chrUn 92.796 1638 101 6 2716 4352 384011334 384012955 0.000000e+00 2355.0
29 TraesCS3D01G016000 chrUn 93.384 1315 57 15 501 1807 35082053 35083345 0.000000e+00 1919.0
30 TraesCS3D01G016000 chrUn 90.840 1452 101 5 1645 3084 35083099 35084530 0.000000e+00 1916.0
31 TraesCS3D01G016000 chrUn 94.444 1080 58 2 501 1579 35265779 35264701 0.000000e+00 1661.0
32 TraesCS3D01G016000 chrUn 94.542 1026 42 5 2910 3934 361274985 361275997 0.000000e+00 1572.0
33 TraesCS3D01G016000 chrUn 91.264 1179 59 25 3739 4880 337851499 337850328 0.000000e+00 1567.0
34 TraesCS3D01G016000 chrUn 91.171 1178 61 25 3739 4880 337885520 337884350 0.000000e+00 1559.0
35 TraesCS3D01G016000 chrUn 96.628 860 21 6 548 1402 328515412 328514556 0.000000e+00 1421.0
36 TraesCS3D01G016000 chrUn 90.183 927 59 6 1645 2559 445627689 445626783 0.000000e+00 1179.0
37 TraesCS3D01G016000 chrUn 89.977 888 57 6 1684 2559 462773942 462773075 0.000000e+00 1118.0
38 TraesCS3D01G016000 chrUn 84.440 919 137 6 2319 3234 35083612 35084527 0.000000e+00 900.0
39 TraesCS3D01G016000 chrUn 96.353 521 18 1 501 1020 293413303 293413823 0.000000e+00 856.0
40 TraesCS3D01G016000 chrUn 95.749 447 5 6 68 503 35266272 35265829 0.000000e+00 708.0
41 TraesCS3D01G016000 chrUn 95.749 447 5 6 68 503 293412810 293413253 0.000000e+00 708.0
42 TraesCS3D01G016000 chrUn 95.526 447 6 6 68 503 35081560 35082003 0.000000e+00 702.0
43 TraesCS3D01G016000 chrUn 92.841 447 9 9 68 503 328515964 328515530 1.150000e-175 627.0
44 TraesCS3D01G016000 chrUn 86.779 416 31 13 1406 1813 445627835 445627436 4.480000e-120 442.0
45 TraesCS3D01G016000 chrUn 74.553 727 94 45 4067 4754 35205757 35206431 2.940000e-57 233.0
46 TraesCS3D01G016000 chrUn 81.633 245 40 4 1976 2217 35260958 35260716 1.070000e-46 198.0
47 TraesCS3D01G016000 chrUn 81.633 245 40 4 1976 2217 35263795 35263553 1.070000e-46 198.0
48 TraesCS3D01G016000 chrUn 84.409 186 29 0 1462 1647 35083228 35083413 3.000000e-42 183.0
49 TraesCS3D01G016000 chrUn 89.437 142 12 3 4619 4759 315904123 315903984 5.020000e-40 176.0
50 TraesCS3D01G016000 chrUn 89.437 142 12 3 4619 4759 343026907 343026768 5.020000e-40 176.0
51 TraesCS3D01G016000 chrUn 79.221 231 24 13 1591 1813 462773942 462773728 6.590000e-29 139.0
52 TraesCS3D01G016000 chr3A 96.543 1128 34 5 548 1672 15613118 15611993 0.000000e+00 1862.0
53 TraesCS3D01G016000 chr3A 94.188 757 32 4 1779 2523 15612021 15611265 0.000000e+00 1144.0
54 TraesCS3D01G016000 chr3A 94.231 728 41 1 2882 3609 15610870 15610144 0.000000e+00 1110.0
55 TraesCS3D01G016000 chr3A 88.571 805 49 23 3949 4722 15610144 15609352 0.000000e+00 937.0
56 TraesCS3D01G016000 chr3A 93.987 449 14 5 68 503 15613683 15613235 0.000000e+00 667.0
57 TraesCS3D01G016000 chr3A 91.239 331 28 1 1249 1579 15690199 15690528 2.680000e-122 449.0
58 TraesCS3D01G016000 chr3A 95.429 175 8 0 1645 1819 15612113 15611939 3.720000e-71 279.0
59 TraesCS3D01G016000 chr3A 80.132 151 13 9 73 209 36743823 36743970 4.020000e-16 97.1
60 TraesCS3D01G016000 chr6D 77.910 335 52 16 172 492 160225349 160225675 6.450000e-44 189.0
61 TraesCS3D01G016000 chr7A 77.287 317 51 16 172 475 49781621 49781313 3.020000e-37 167.0
62 TraesCS3D01G016000 chr6B 95.833 48 2 0 4457 4504 30536882 30536929 1.460000e-10 78.7
63 TraesCS3D01G016000 chr7B 96.970 33 0 1 4550 4582 439599612 439599581 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G016000 chr3D 5656277 5661156 4879 False 2067.166667 9012 90.871000 1 4880 6 chr3D.!!$F2 4879
1 TraesCS3D01G016000 chr3B 12127677 12129667 1990 False 2806.000000 2806 92.334000 2910 4880 1 chr3B.!!$F1 1970
2 TraesCS3D01G016000 chr3B 27879974 27881010 1036 False 1635.000000 1635 95.096000 634 1672 1 chr3B.!!$F3 1038
3 TraesCS3D01G016000 chr3B 12147551 12152064 4513 False 1599.400000 3203 90.673600 68 4880 5 chr3B.!!$F4 4812
4 TraesCS3D01G016000 chr3B 27889630 27891837 2207 False 1577.500000 2730 90.467000 2609 4871 2 chr3B.!!$F5 2262
5 TraesCS3D01G016000 chr3B 12287491 12292059 4568 True 1250.166667 2423 91.921000 68 4585 6 chr3B.!!$R2 4517
6 TraesCS3D01G016000 chrUn 252876901 252878891 1990 True 2800.000000 2800 92.285000 2910 4880 1 chrUn.!!$R1 1970
7 TraesCS3D01G016000 chrUn 384011334 384012955 1621 False 2355.000000 2355 92.796000 2716 4352 1 chrUn.!!$F3 1636
8 TraesCS3D01G016000 chrUn 361274985 361275997 1012 False 1572.000000 1572 94.542000 2910 3934 1 chrUn.!!$F2 1024
9 TraesCS3D01G016000 chrUn 337850328 337851499 1171 True 1567.000000 1567 91.264000 3739 4880 1 chrUn.!!$R3 1141
10 TraesCS3D01G016000 chrUn 337884350 337885520 1170 True 1559.000000 1559 91.171000 3739 4880 1 chrUn.!!$R4 1141
11 TraesCS3D01G016000 chrUn 35081560 35085902 4342 False 1446.833333 3061 89.906333 68 4772 6 chrUn.!!$F4 4704
12 TraesCS3D01G016000 chrUn 328514556 328515964 1408 True 1024.000000 1421 94.734500 68 1402 2 chrUn.!!$R7 1334
13 TraesCS3D01G016000 chrUn 445626783 445627835 1052 True 810.500000 1179 88.481000 1406 2559 2 chrUn.!!$R8 1153
14 TraesCS3D01G016000 chrUn 293412810 293413823 1013 False 782.000000 856 96.051000 68 1020 2 chrUn.!!$F5 952
15 TraesCS3D01G016000 chrUn 35260716 35266272 5556 True 691.250000 1661 88.364750 68 2217 4 chrUn.!!$R6 2149
16 TraesCS3D01G016000 chrUn 462773075 462773942 867 True 628.500000 1118 84.599000 1591 2559 2 chrUn.!!$R9 968
17 TraesCS3D01G016000 chrUn 35205757 35206431 674 False 233.000000 233 74.553000 4067 4754 1 chrUn.!!$F1 687
18 TraesCS3D01G016000 chr3A 15609352 15613683 4331 True 999.833333 1862 93.824833 68 4722 6 chr3A.!!$R1 4654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 893 3.639561 TGCTAATTCACCCGAGCTATGTA 59.360 43.478 0.0 0.0 35.89 2.29 F
1695 2229 0.171903 GCTGATTGCGGACATGCTTT 59.828 50.000 0.0 0.0 35.36 3.51 F
2955 4024 0.033504 TGACCTCTGAAGTTGGCGAC 59.966 55.000 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 2275 0.036010 GGCTTCCTTCACTAGCTGCA 60.036 55.0 1.02 0.0 35.30 4.41 R
3064 4650 0.034186 TCGGCTGGCATTTCTTCCAT 60.034 50.0 1.08 0.0 0.00 3.41 R
4243 6048 0.392193 ATGCTCAGGCTCGGAACTTG 60.392 55.0 0.00 0.0 39.59 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.668497 GTTCCTTTGATATGATATTAGTACCCC 57.332 37.037 0.00 0.00 0.00 4.95
46 47 8.388656 TCCTTTGATATGATATTAGTACCCCC 57.611 38.462 0.00 0.00 0.00 5.40
47 48 7.964867 TCCTTTGATATGATATTAGTACCCCCA 59.035 37.037 0.00 0.00 0.00 4.96
48 49 8.781951 CCTTTGATATGATATTAGTACCCCCAT 58.218 37.037 0.00 0.00 0.00 4.00
51 52 9.574577 TTGATATGATATTAGTACCCCCATTCT 57.425 33.333 0.00 0.00 0.00 2.40
52 53 9.574577 TGATATGATATTAGTACCCCCATTCTT 57.425 33.333 0.00 0.00 0.00 2.52
57 58 9.455144 TGATATTAGTACCCCCATTCTTAAAGA 57.545 33.333 0.00 0.00 0.00 2.52
58 59 9.945904 GATATTAGTACCCCCATTCTTAAAGAG 57.054 37.037 0.00 0.00 0.00 2.85
59 60 6.570654 TTAGTACCCCCATTCTTAAAGAGG 57.429 41.667 0.00 0.00 0.00 3.69
60 61 3.786450 AGTACCCCCATTCTTAAAGAGGG 59.214 47.826 0.00 0.00 39.29 4.30
66 67 5.452341 CCCATTCTTAAAGAGGGGTTAGT 57.548 43.478 0.00 0.00 36.48 2.24
403 404 9.154847 AGTTATTGCAAGGATAAAATTTTGAGC 57.845 29.630 13.76 8.43 0.00 4.26
404 405 9.154847 GTTATTGCAAGGATAAAATTTTGAGCT 57.845 29.630 13.76 0.00 0.00 4.09
524 590 7.978982 ACAATGATCTTTTTCTGTAGGATTCG 58.021 34.615 0.00 0.00 0.00 3.34
528 594 6.258727 TGATCTTTTTCTGTAGGATTCGATGC 59.741 38.462 0.00 0.00 0.00 3.91
681 769 8.809468 AATAGCCTCATTCTAGTGATACGATA 57.191 34.615 0.00 0.00 0.00 2.92
694 782 9.569167 CTAGTGATACGATAAAGAAAGTGACAA 57.431 33.333 0.00 0.00 0.00 3.18
732 824 4.674281 TCCGGTAAAGCCATTTTTGTTT 57.326 36.364 0.00 0.00 36.97 2.83
754 846 4.722194 TGATTTTTAGCAATGTCGCTGTC 58.278 39.130 0.00 0.00 43.68 3.51
786 879 5.587844 ACTCAACACATGGAGATGCTAATTC 59.412 40.000 0.00 0.00 35.17 2.17
800 893 3.639561 TGCTAATTCACCCGAGCTATGTA 59.360 43.478 0.00 0.00 35.89 2.29
1490 1982 1.134367 TCGTAGCTGGTGAAGGAATCG 59.866 52.381 0.00 0.00 0.00 3.34
1630 2164 1.695242 ACCACATCGTCCTTGGTTACA 59.305 47.619 0.00 0.00 40.98 2.41
1671 2205 2.027745 CAGCTAGTGAAGGAAGCCAAGA 60.028 50.000 0.00 0.00 36.92 3.02
1672 2206 2.235898 AGCTAGTGAAGGAAGCCAAGAG 59.764 50.000 0.00 0.00 36.92 2.85
1673 2207 2.679349 GCTAGTGAAGGAAGCCAAGAGG 60.679 54.545 0.00 0.00 38.23 3.69
1684 2218 1.807886 CCAAGAGGCTGCTGATTGC 59.192 57.895 0.00 0.00 43.25 3.56
1685 2219 1.428219 CAAGAGGCTGCTGATTGCG 59.572 57.895 0.00 0.00 46.63 4.85
1692 2226 3.189921 TGCTGATTGCGGACATGC 58.810 55.556 0.00 0.00 46.63 4.06
1693 2227 1.377594 TGCTGATTGCGGACATGCT 60.378 52.632 0.00 0.00 46.63 3.79
1694 2228 0.961857 TGCTGATTGCGGACATGCTT 60.962 50.000 0.00 0.00 46.63 3.91
1695 2229 0.171903 GCTGATTGCGGACATGCTTT 59.828 50.000 0.00 0.00 35.36 3.51
1696 2230 1.904144 CTGATTGCGGACATGCTTTG 58.096 50.000 0.00 0.00 35.36 2.77
1697 2231 0.527113 TGATTGCGGACATGCTTTGG 59.473 50.000 0.00 0.00 35.36 3.28
1698 2232 0.810648 GATTGCGGACATGCTTTGGA 59.189 50.000 0.00 0.00 35.36 3.53
1699 2233 1.202114 GATTGCGGACATGCTTTGGAA 59.798 47.619 0.00 0.00 35.36 3.53
1700 2234 0.597568 TTGCGGACATGCTTTGGAAG 59.402 50.000 0.00 0.00 35.36 3.46
1712 2246 2.643551 CTTTGGAAGCCACCATATCGT 58.356 47.619 0.29 0.00 39.82 3.73
1713 2247 2.325583 TTGGAAGCCACCATATCGTC 57.674 50.000 0.29 0.00 39.82 4.20
1714 2248 0.468226 TGGAAGCCACCATATCGTCC 59.532 55.000 0.00 0.00 34.77 4.79
1715 2249 0.759346 GGAAGCCACCATATCGTCCT 59.241 55.000 0.00 0.00 0.00 3.85
1716 2250 1.141053 GGAAGCCACCATATCGTCCTT 59.859 52.381 0.00 0.00 0.00 3.36
1717 2251 2.213499 GAAGCCACCATATCGTCCTTG 58.787 52.381 0.00 0.00 0.00 3.61
1718 2252 0.469917 AGCCACCATATCGTCCTTGG 59.530 55.000 0.00 0.00 36.56 3.61
1719 2253 0.180406 GCCACCATATCGTCCTTGGT 59.820 55.000 0.00 0.00 44.49 3.67
1720 2254 1.408266 GCCACCATATCGTCCTTGGTT 60.408 52.381 0.00 0.00 41.77 3.67
1721 2255 2.158871 GCCACCATATCGTCCTTGGTTA 60.159 50.000 0.00 0.00 41.77 2.85
1722 2256 3.463944 CCACCATATCGTCCTTGGTTAC 58.536 50.000 0.00 0.00 41.77 2.50
1723 2257 3.120792 CACCATATCGTCCTTGGTTACG 58.879 50.000 0.00 0.00 41.77 3.18
1724 2258 2.101917 ACCATATCGTCCTTGGTTACGG 59.898 50.000 0.00 0.00 40.87 4.02
1725 2259 2.363038 CCATATCGTCCTTGGTTACGGA 59.637 50.000 0.00 0.00 39.52 4.69
1726 2260 3.181473 CCATATCGTCCTTGGTTACGGAA 60.181 47.826 0.00 0.00 39.52 4.30
1727 2261 4.435425 CATATCGTCCTTGGTTACGGAAA 58.565 43.478 0.00 0.00 39.52 3.13
1728 2262 2.906691 TCGTCCTTGGTTACGGAAAA 57.093 45.000 0.00 0.00 39.52 2.29
1729 2263 3.191078 TCGTCCTTGGTTACGGAAAAA 57.809 42.857 0.00 0.00 39.52 1.94
1730 2264 3.132925 TCGTCCTTGGTTACGGAAAAAG 58.867 45.455 0.00 0.00 39.52 2.27
1731 2265 3.132925 CGTCCTTGGTTACGGAAAAAGA 58.867 45.455 5.78 0.00 35.51 2.52
1732 2266 3.560896 CGTCCTTGGTTACGGAAAAAGAA 59.439 43.478 5.78 0.00 35.51 2.52
1733 2267 4.553351 CGTCCTTGGTTACGGAAAAAGAAC 60.553 45.833 5.78 0.00 35.51 3.01
1734 2268 3.884693 TCCTTGGTTACGGAAAAAGAACC 59.115 43.478 5.78 0.00 41.49 3.62
1735 2269 3.887110 CCTTGGTTACGGAAAAAGAACCT 59.113 43.478 5.78 0.00 41.64 3.50
1736 2270 4.023450 CCTTGGTTACGGAAAAAGAACCTC 60.023 45.833 5.78 0.00 41.64 3.85
1737 2271 4.426736 TGGTTACGGAAAAAGAACCTCT 57.573 40.909 4.43 0.00 41.64 3.69
1738 2272 4.784177 TGGTTACGGAAAAAGAACCTCTT 58.216 39.130 4.43 0.00 41.64 2.85
1739 2273 4.818005 TGGTTACGGAAAAAGAACCTCTTC 59.182 41.667 4.43 0.00 41.64 2.87
1740 2274 5.061853 GGTTACGGAAAAAGAACCTCTTCT 58.938 41.667 0.00 0.00 35.27 2.85
1741 2275 5.530171 GGTTACGGAAAAAGAACCTCTTCTT 59.470 40.000 0.00 0.00 46.89 2.52
1742 2276 6.427974 GTTACGGAAAAAGAACCTCTTCTTG 58.572 40.000 0.00 0.00 44.59 3.02
1743 2277 3.315470 ACGGAAAAAGAACCTCTTCTTGC 59.685 43.478 0.00 0.00 44.59 4.01
1744 2278 3.315191 CGGAAAAAGAACCTCTTCTTGCA 59.685 43.478 0.00 0.00 44.59 4.08
1745 2279 4.555511 CGGAAAAAGAACCTCTTCTTGCAG 60.556 45.833 0.00 0.00 44.59 4.41
1746 2280 3.998099 AAAAGAACCTCTTCTTGCAGC 57.002 42.857 0.00 0.00 44.59 5.25
1747 2281 2.947127 AAGAACCTCTTCTTGCAGCT 57.053 45.000 0.00 0.00 43.84 4.24
1748 2282 4.357918 AAAGAACCTCTTCTTGCAGCTA 57.642 40.909 0.00 0.00 44.59 3.32
1749 2283 3.608316 AGAACCTCTTCTTGCAGCTAG 57.392 47.619 0.00 0.00 32.29 3.42
1750 2284 2.903135 AGAACCTCTTCTTGCAGCTAGT 59.097 45.455 3.65 0.00 32.29 2.57
1751 2285 2.758736 ACCTCTTCTTGCAGCTAGTG 57.241 50.000 3.65 0.00 0.00 2.74
1752 2286 2.251818 ACCTCTTCTTGCAGCTAGTGA 58.748 47.619 3.65 3.56 0.00 3.41
1753 2287 2.634940 ACCTCTTCTTGCAGCTAGTGAA 59.365 45.455 3.65 0.00 0.00 3.18
1754 2288 3.260740 CCTCTTCTTGCAGCTAGTGAAG 58.739 50.000 3.65 7.19 36.44 3.02
1755 2289 3.260740 CTCTTCTTGCAGCTAGTGAAGG 58.739 50.000 3.65 5.64 35.98 3.46
1756 2290 2.899900 TCTTCTTGCAGCTAGTGAAGGA 59.100 45.455 3.65 0.00 35.98 3.36
1757 2291 3.324846 TCTTCTTGCAGCTAGTGAAGGAA 59.675 43.478 3.65 0.00 35.98 3.36
1758 2292 3.325293 TCTTGCAGCTAGTGAAGGAAG 57.675 47.619 3.65 0.00 0.00 3.46
1759 2293 1.736681 CTTGCAGCTAGTGAAGGAAGC 59.263 52.381 0.00 0.00 36.48 3.86
1760 2294 0.036010 TGCAGCTAGTGAAGGAAGCC 60.036 55.000 0.00 0.00 36.92 4.35
1761 2295 0.036010 GCAGCTAGTGAAGGAAGCCA 60.036 55.000 0.00 0.00 36.92 4.75
1762 2296 1.611673 GCAGCTAGTGAAGGAAGCCAA 60.612 52.381 0.00 0.00 36.92 4.52
1763 2297 2.354259 CAGCTAGTGAAGGAAGCCAAG 58.646 52.381 0.00 0.00 36.92 3.61
1771 2305 1.471684 GAAGGAAGCCAAGATGTGCAG 59.528 52.381 0.00 0.00 0.00 4.41
1773 2307 0.610232 GGAAGCCAAGATGTGCAGGT 60.610 55.000 0.00 0.00 0.00 4.00
1919 2465 1.086696 TTTGGAAGCTACAGCATCGC 58.913 50.000 3.70 0.00 45.16 4.58
1950 2496 5.948992 ACTGAAAAAGCACCTCTTGATAC 57.051 39.130 0.00 0.00 34.67 2.24
1972 2695 1.511850 CTGAATCGCACAACTGTCCA 58.488 50.000 0.00 0.00 0.00 4.02
1974 2697 1.202639 TGAATCGCACAACTGTCCACT 60.203 47.619 0.00 0.00 0.00 4.00
1992 2715 1.674764 CTCTCTCCCACATCAGCGCT 61.675 60.000 2.64 2.64 0.00 5.92
2024 2749 7.898636 CCAGTATATTCCTCTATCCCTTTCTCT 59.101 40.741 0.00 0.00 0.00 3.10
2033 2758 6.183360 CCTCTATCCCTTTCTCTGTACAGTTC 60.183 46.154 21.99 0.00 0.00 3.01
2402 3129 1.414919 GGATTACCATACCGGCACTCA 59.585 52.381 0.00 0.00 39.03 3.41
2513 3240 0.308993 AACGCAAAGCTGTTGAGAGC 59.691 50.000 15.32 0.00 39.46 4.09
2561 3288 1.689273 CCATACCAGCACTCCTAGGAC 59.311 57.143 7.62 0.00 0.00 3.85
2583 3652 6.128634 GGACAAGTCCTATGTTTGTAACGAAG 60.129 42.308 11.94 0.00 46.16 3.79
2584 3653 5.178809 ACAAGTCCTATGTTTGTAACGAAGC 59.821 40.000 0.00 0.00 33.57 3.86
2585 3654 5.148651 AGTCCTATGTTTGTAACGAAGCT 57.851 39.130 0.00 0.00 0.00 3.74
2586 3655 5.548406 AGTCCTATGTTTGTAACGAAGCTT 58.452 37.500 0.00 0.00 0.00 3.74
2587 3656 5.408604 AGTCCTATGTTTGTAACGAAGCTTG 59.591 40.000 2.10 0.00 0.00 4.01
2588 3657 5.407387 GTCCTATGTTTGTAACGAAGCTTGA 59.593 40.000 2.10 0.00 0.00 3.02
2589 3658 5.992829 TCCTATGTTTGTAACGAAGCTTGAA 59.007 36.000 2.10 0.00 0.00 2.69
2590 3659 6.653320 TCCTATGTTTGTAACGAAGCTTGAAT 59.347 34.615 2.10 0.00 0.00 2.57
2591 3660 6.742718 CCTATGTTTGTAACGAAGCTTGAATG 59.257 38.462 2.10 0.00 0.00 2.67
2592 3661 5.493133 TGTTTGTAACGAAGCTTGAATGT 57.507 34.783 2.10 0.00 0.00 2.71
2593 3662 5.507077 TGTTTGTAACGAAGCTTGAATGTC 58.493 37.500 2.10 0.00 0.00 3.06
2594 3663 5.065346 TGTTTGTAACGAAGCTTGAATGTCA 59.935 36.000 2.10 0.00 0.00 3.58
2595 3664 5.940192 TTGTAACGAAGCTTGAATGTCAT 57.060 34.783 2.10 0.00 0.00 3.06
2596 3665 7.041712 TGTTTGTAACGAAGCTTGAATGTCATA 60.042 33.333 2.10 0.00 0.00 2.15
2597 3666 7.428282 TTGTAACGAAGCTTGAATGTCATAA 57.572 32.000 2.10 0.00 0.00 1.90
2598 3667 6.827641 TGTAACGAAGCTTGAATGTCATAAC 58.172 36.000 2.10 0.00 0.00 1.89
2599 3668 5.940192 AACGAAGCTTGAATGTCATAACA 57.060 34.783 2.10 0.00 40.38 2.41
2600 3669 5.536554 ACGAAGCTTGAATGTCATAACAG 57.463 39.130 2.10 0.00 39.20 3.16
2601 3670 4.393062 ACGAAGCTTGAATGTCATAACAGG 59.607 41.667 2.10 0.00 39.20 4.00
2602 3671 4.666237 GAAGCTTGAATGTCATAACAGGC 58.334 43.478 2.10 14.64 39.20 4.85
2603 3672 3.019564 AGCTTGAATGTCATAACAGGCC 58.980 45.455 17.14 0.00 39.20 5.19
2604 3673 3.019564 GCTTGAATGTCATAACAGGCCT 58.980 45.455 0.00 0.00 39.20 5.19
2605 3674 3.445096 GCTTGAATGTCATAACAGGCCTT 59.555 43.478 0.00 0.00 39.20 4.35
2606 3675 4.082026 GCTTGAATGTCATAACAGGCCTTT 60.082 41.667 0.00 3.74 39.20 3.11
2607 3676 5.389859 TTGAATGTCATAACAGGCCTTTG 57.610 39.130 0.00 0.00 39.20 2.77
2608 3677 3.763360 TGAATGTCATAACAGGCCTTTGG 59.237 43.478 0.00 0.00 39.20 3.28
2609 3678 3.737559 ATGTCATAACAGGCCTTTGGA 57.262 42.857 0.00 1.50 39.20 3.53
2610 3679 3.517296 TGTCATAACAGGCCTTTGGAA 57.483 42.857 0.00 0.00 0.00 3.53
2611 3680 3.420893 TGTCATAACAGGCCTTTGGAAG 58.579 45.455 0.00 0.00 0.00 3.46
2612 3681 3.073798 TGTCATAACAGGCCTTTGGAAGA 59.926 43.478 0.00 0.00 0.00 2.87
2613 3682 3.691609 GTCATAACAGGCCTTTGGAAGAG 59.308 47.826 0.00 0.00 0.00 2.85
2614 3683 2.200373 TAACAGGCCTTTGGAAGAGC 57.800 50.000 0.00 0.00 0.00 4.09
2615 3684 0.480252 AACAGGCCTTTGGAAGAGCT 59.520 50.000 0.00 0.00 0.00 4.09
2616 3685 0.251077 ACAGGCCTTTGGAAGAGCTG 60.251 55.000 0.00 0.00 0.00 4.24
2617 3686 1.303970 AGGCCTTTGGAAGAGCTGC 60.304 57.895 0.00 0.00 0.00 5.25
2618 3687 2.346541 GGCCTTTGGAAGAGCTGCC 61.347 63.158 0.00 0.00 0.00 4.85
2619 3688 1.604593 GCCTTTGGAAGAGCTGCCA 60.605 57.895 0.00 0.00 0.00 4.92
2620 3689 1.593296 GCCTTTGGAAGAGCTGCCAG 61.593 60.000 0.00 0.00 35.23 4.85
2621 3690 1.593296 CCTTTGGAAGAGCTGCCAGC 61.593 60.000 9.13 9.13 42.84 4.85
2622 3691 1.593296 CTTTGGAAGAGCTGCCAGCC 61.593 60.000 14.25 5.00 43.77 4.85
2623 3692 3.907260 TTGGAAGAGCTGCCAGCCG 62.907 63.158 14.25 0.00 43.77 5.52
2624 3693 4.087892 GGAAGAGCTGCCAGCCGA 62.088 66.667 14.25 0.00 43.77 5.54
2625 3694 2.511145 GAAGAGCTGCCAGCCGAG 60.511 66.667 14.25 0.00 43.77 4.63
2626 3695 4.093291 AAGAGCTGCCAGCCGAGG 62.093 66.667 14.25 0.00 43.77 4.63
2651 3720 3.963733 CCTCTGAAGGTGGCAATGA 57.036 52.632 0.00 0.00 37.94 2.57
2652 3721 2.205022 CCTCTGAAGGTGGCAATGAA 57.795 50.000 0.00 0.00 37.94 2.57
2653 3722 2.089980 CCTCTGAAGGTGGCAATGAAG 58.910 52.381 0.00 0.00 37.94 3.02
2654 3723 2.290514 CCTCTGAAGGTGGCAATGAAGA 60.291 50.000 0.00 0.00 37.94 2.87
2655 3724 3.008330 CTCTGAAGGTGGCAATGAAGAG 58.992 50.000 0.00 0.00 0.00 2.85
2656 3725 1.471684 CTGAAGGTGGCAATGAAGAGC 59.528 52.381 0.00 0.00 0.00 4.09
2657 3726 1.074405 TGAAGGTGGCAATGAAGAGCT 59.926 47.619 0.00 0.00 0.00 4.09
2658 3727 1.471684 GAAGGTGGCAATGAAGAGCTG 59.528 52.381 0.00 0.00 0.00 4.24
2659 3728 0.323178 AGGTGGCAATGAAGAGCTGG 60.323 55.000 0.00 0.00 0.00 4.85
2660 3729 0.610232 GGTGGCAATGAAGAGCTGGT 60.610 55.000 0.00 0.00 0.00 4.00
2661 3730 0.524862 GTGGCAATGAAGAGCTGGTG 59.475 55.000 0.00 0.00 0.00 4.17
2662 3731 0.401356 TGGCAATGAAGAGCTGGTGA 59.599 50.000 0.00 0.00 0.00 4.02
2663 3732 1.093159 GGCAATGAAGAGCTGGTGAG 58.907 55.000 0.00 0.00 0.00 3.51
2664 3733 1.339438 GGCAATGAAGAGCTGGTGAGA 60.339 52.381 0.00 0.00 0.00 3.27
2665 3734 2.008329 GCAATGAAGAGCTGGTGAGAG 58.992 52.381 0.00 0.00 0.00 3.20
2666 3735 2.630158 CAATGAAGAGCTGGTGAGAGG 58.370 52.381 0.00 0.00 0.00 3.69
2667 3736 1.202330 ATGAAGAGCTGGTGAGAGGG 58.798 55.000 0.00 0.00 0.00 4.30
2668 3737 0.115152 TGAAGAGCTGGTGAGAGGGA 59.885 55.000 0.00 0.00 0.00 4.20
2669 3738 1.270907 GAAGAGCTGGTGAGAGGGAA 58.729 55.000 0.00 0.00 0.00 3.97
2670 3739 1.206849 GAAGAGCTGGTGAGAGGGAAG 59.793 57.143 0.00 0.00 0.00 3.46
2671 3740 1.220477 GAGCTGGTGAGAGGGAAGC 59.780 63.158 0.00 0.00 0.00 3.86
2672 3741 1.229464 AGCTGGTGAGAGGGAAGCT 60.229 57.895 0.00 0.00 39.34 3.74
2673 3742 1.078567 GCTGGTGAGAGGGAAGCTG 60.079 63.158 0.00 0.00 0.00 4.24
2674 3743 1.548357 GCTGGTGAGAGGGAAGCTGA 61.548 60.000 0.00 0.00 0.00 4.26
2675 3744 0.979665 CTGGTGAGAGGGAAGCTGAA 59.020 55.000 0.00 0.00 0.00 3.02
2676 3745 1.349026 CTGGTGAGAGGGAAGCTGAAA 59.651 52.381 0.00 0.00 0.00 2.69
2677 3746 1.072331 TGGTGAGAGGGAAGCTGAAAC 59.928 52.381 0.00 0.00 0.00 2.78
2678 3747 1.072331 GGTGAGAGGGAAGCTGAAACA 59.928 52.381 0.00 0.00 0.00 2.83
2679 3748 2.290577 GGTGAGAGGGAAGCTGAAACAT 60.291 50.000 0.00 0.00 0.00 2.71
2680 3749 3.006247 GTGAGAGGGAAGCTGAAACATC 58.994 50.000 0.00 0.00 0.00 3.06
2681 3750 2.026822 TGAGAGGGAAGCTGAAACATCC 60.027 50.000 0.00 0.00 0.00 3.51
2682 3751 2.238395 GAGAGGGAAGCTGAAACATCCT 59.762 50.000 0.08 0.00 32.41 3.24
2683 3752 3.452627 GAGAGGGAAGCTGAAACATCCTA 59.547 47.826 0.08 0.00 32.41 2.94
2684 3753 3.198853 AGAGGGAAGCTGAAACATCCTAC 59.801 47.826 0.08 0.00 32.41 3.18
2747 3816 2.731451 TCGAACAGAAGCTTGATTGTCG 59.269 45.455 2.10 6.75 0.00 4.35
2804 3873 2.496899 ATTTCTGAAGGTGGCGATGT 57.503 45.000 0.00 0.00 0.00 3.06
2846 3915 4.448060 GGTGAAACGTCCTAAGAAGAACTG 59.552 45.833 0.00 0.00 38.12 3.16
2900 3969 6.397272 GGTTTGAACCAAAGCATGAATATCA 58.603 36.000 14.39 0.00 46.77 2.15
2913 3982 3.738982 TGAATATCATAACGGGCCTGTG 58.261 45.455 20.54 6.09 0.00 3.66
2926 3995 1.073722 CCTGTGGAAGAGCTGCCAA 59.926 57.895 0.00 0.00 35.63 4.52
2940 4009 2.358737 CCAACCGAGGCACTGACC 60.359 66.667 0.00 0.00 41.55 4.02
2948 4017 3.155897 AGGCACTGACCTCTGAAGT 57.844 52.632 0.00 0.00 37.18 3.01
2955 4024 0.033504 TGACCTCTGAAGTTGGCGAC 59.966 55.000 0.00 0.00 0.00 5.19
2977 4046 1.220477 GAGCTGGTGAGAGGGAAGC 59.780 63.158 0.00 0.00 0.00 3.86
2984 4053 1.072331 GGTGAGAGGGAAGCTGAAACA 59.928 52.381 0.00 0.00 0.00 2.83
2990 4059 3.454082 AGAGGGAAGCTGAAACATCCTAG 59.546 47.826 0.08 0.00 32.41 3.02
2994 4063 3.942115 GGAAGCTGAAACATCCTAGGAAC 59.058 47.826 17.30 6.01 0.00 3.62
3002 4071 4.838904 AACATCCTAGGAACAACTACCC 57.161 45.455 17.30 0.00 0.00 3.69
3004 4073 3.775316 ACATCCTAGGAACAACTACCCTG 59.225 47.826 17.30 7.85 0.00 4.45
3064 4650 3.181469 GCCTGAATGTCATAACGGGTCTA 60.181 47.826 15.03 0.00 0.00 2.59
3461 5171 0.253327 GAATCTGCGAAGACCCCCTT 59.747 55.000 0.00 0.00 37.93 3.95
3620 5335 5.233083 TGCCCCATGTATCTCAGAATTAG 57.767 43.478 0.00 0.00 0.00 1.73
3693 5408 5.688823 TGACTGCAATACTTTTGATGTTCG 58.311 37.500 0.00 0.00 0.00 3.95
4120 5913 9.528847 GTGAAATTTGTGAAAAACTCTGTTTTC 57.471 29.630 8.57 4.94 44.36 2.29
4139 5932 2.930950 TCTTTGTGGAGGTTGGAACTG 58.069 47.619 0.00 0.00 0.00 3.16
4148 5941 5.642491 GTGGAGGTTGGAACTGTATTTAGTC 59.358 44.000 0.00 0.00 0.00 2.59
4243 6048 1.188863 TTGGCGAGGGTACTTACTCC 58.811 55.000 0.00 0.00 0.00 3.85
4313 6118 8.110612 CGTAAGCATAATAATATTCTGAAGGCG 58.889 37.037 3.01 0.00 0.00 5.52
4343 6148 9.166173 TGTCTGAAATCGTCTCATATTTTTCAT 57.834 29.630 0.00 0.00 33.91 2.57
4533 6346 0.689623 AGTCCAGGTTGCTCAGAAGG 59.310 55.000 0.00 0.00 0.00 3.46
4537 6350 2.174639 TCCAGGTTGCTCAGAAGGAAAA 59.825 45.455 0.00 0.00 34.32 2.29
4598 6418 9.230122 TGAAGAGAAAATTATTATGAGCACACA 57.770 29.630 0.00 0.00 0.00 3.72
4609 6429 6.882610 TTATGAGCACACAAAAGACTTGAT 57.117 33.333 0.00 0.00 0.00 2.57
4611 6431 3.243168 TGAGCACACAAAAGACTTGATGC 60.243 43.478 9.13 9.13 36.25 3.91
4614 6434 4.580167 AGCACACAAAAGACTTGATGCTAA 59.420 37.500 14.80 0.00 40.65 3.09
4615 6435 4.676924 GCACACAAAAGACTTGATGCTAAC 59.323 41.667 9.62 0.00 34.58 2.34
4616 6436 5.506317 GCACACAAAAGACTTGATGCTAACT 60.506 40.000 9.62 0.00 34.58 2.24
4628 6484 4.754322 TGATGCTAACTATGAGCGTGAAA 58.246 39.130 0.00 0.00 43.19 2.69
4680 6557 9.424319 TGTTAAGTGAACAACTGAGAGATATTC 57.576 33.333 0.00 0.00 45.23 1.75
4829 8147 4.126520 TCATTACTTTGGGGGAAAAGCT 57.873 40.909 0.00 0.00 40.20 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.668497 GGGGTACTAATATCATATCAAAGGAAC 57.332 37.037 0.00 0.00 0.00 3.62
20 21 8.832735 GGGGGTACTAATATCATATCAAAGGAA 58.167 37.037 0.00 0.00 0.00 3.36
21 22 7.964867 TGGGGGTACTAATATCATATCAAAGGA 59.035 37.037 0.00 0.00 0.00 3.36
22 23 8.158025 TGGGGGTACTAATATCATATCAAAGG 57.842 38.462 0.00 0.00 0.00 3.11
25 26 9.574577 AGAATGGGGGTACTAATATCATATCAA 57.425 33.333 0.00 0.00 0.00 2.57
26 27 9.574577 AAGAATGGGGGTACTAATATCATATCA 57.425 33.333 0.00 0.00 0.00 2.15
31 32 9.455144 TCTTTAAGAATGGGGGTACTAATATCA 57.545 33.333 0.00 0.00 0.00 2.15
32 33 9.945904 CTCTTTAAGAATGGGGGTACTAATATC 57.054 37.037 0.00 0.00 0.00 1.63
33 34 8.891501 CCTCTTTAAGAATGGGGGTACTAATAT 58.108 37.037 0.00 0.00 0.00 1.28
34 35 7.294008 CCCTCTTTAAGAATGGGGGTACTAATA 59.706 40.741 10.49 0.00 40.61 0.98
35 36 6.102762 CCCTCTTTAAGAATGGGGGTACTAAT 59.897 42.308 10.49 0.00 40.61 1.73
36 37 5.430745 CCCTCTTTAAGAATGGGGGTACTAA 59.569 44.000 10.49 0.00 40.61 2.24
37 38 4.973211 CCCTCTTTAAGAATGGGGGTACTA 59.027 45.833 10.49 0.00 40.61 1.82
38 39 3.786450 CCCTCTTTAAGAATGGGGGTACT 59.214 47.826 10.49 0.00 40.61 2.73
39 40 4.166246 CCCTCTTTAAGAATGGGGGTAC 57.834 50.000 10.49 0.00 40.61 3.34
44 45 5.452341 ACTAACCCCTCTTTAAGAATGGG 57.548 43.478 21.04 21.04 40.45 4.00
45 46 6.481643 TCAACTAACCCCTCTTTAAGAATGG 58.518 40.000 7.60 7.60 0.00 3.16
46 47 7.283354 GGATCAACTAACCCCTCTTTAAGAATG 59.717 40.741 0.00 0.00 0.00 2.67
47 48 7.184753 AGGATCAACTAACCCCTCTTTAAGAAT 59.815 37.037 0.00 0.00 0.00 2.40
48 49 6.504279 AGGATCAACTAACCCCTCTTTAAGAA 59.496 38.462 0.00 0.00 0.00 2.52
49 50 6.030082 AGGATCAACTAACCCCTCTTTAAGA 58.970 40.000 0.00 0.00 0.00 2.10
50 51 6.116126 CAGGATCAACTAACCCCTCTTTAAG 58.884 44.000 0.00 0.00 0.00 1.85
51 52 5.572885 GCAGGATCAACTAACCCCTCTTTAA 60.573 44.000 0.00 0.00 0.00 1.52
52 53 4.080526 GCAGGATCAACTAACCCCTCTTTA 60.081 45.833 0.00 0.00 0.00 1.85
53 54 3.308473 GCAGGATCAACTAACCCCTCTTT 60.308 47.826 0.00 0.00 0.00 2.52
54 55 2.239907 GCAGGATCAACTAACCCCTCTT 59.760 50.000 0.00 0.00 0.00 2.85
55 56 1.840635 GCAGGATCAACTAACCCCTCT 59.159 52.381 0.00 0.00 0.00 3.69
56 57 1.840635 AGCAGGATCAACTAACCCCTC 59.159 52.381 0.00 0.00 0.00 4.30
57 58 1.972588 AGCAGGATCAACTAACCCCT 58.027 50.000 0.00 0.00 0.00 4.79
58 59 2.369394 CAAGCAGGATCAACTAACCCC 58.631 52.381 0.00 0.00 0.00 4.95
59 60 2.290960 ACCAAGCAGGATCAACTAACCC 60.291 50.000 1.83 0.00 41.22 4.11
60 61 3.010420 GACCAAGCAGGATCAACTAACC 58.990 50.000 1.83 0.00 41.22 2.85
61 62 3.944087 AGACCAAGCAGGATCAACTAAC 58.056 45.455 1.83 0.00 41.22 2.34
62 63 4.383118 GCTAGACCAAGCAGGATCAACTAA 60.383 45.833 1.83 0.00 42.30 2.24
63 64 3.133003 GCTAGACCAAGCAGGATCAACTA 59.867 47.826 1.83 0.00 42.30 2.24
64 65 2.093235 GCTAGACCAAGCAGGATCAACT 60.093 50.000 1.83 0.00 42.30 3.16
65 66 2.284190 GCTAGACCAAGCAGGATCAAC 58.716 52.381 1.83 0.00 42.30 3.18
66 67 2.698855 GCTAGACCAAGCAGGATCAA 57.301 50.000 1.83 0.00 42.30 2.57
325 326 5.327091 CATTGACTAGTACAATTGCAGCAC 58.673 41.667 5.05 0.00 36.07 4.40
399 400 2.703416 CATGTAAGGCAAGACAGCTCA 58.297 47.619 0.00 0.00 34.17 4.26
689 777 5.705441 GGATCCAAGTGTGACTAAATTGTCA 59.295 40.000 6.95 0.00 43.72 3.58
694 782 3.263425 ACCGGATCCAAGTGTGACTAAAT 59.737 43.478 9.46 0.00 0.00 1.40
698 786 1.933021 TACCGGATCCAAGTGTGACT 58.067 50.000 9.46 0.00 0.00 3.41
732 824 4.215185 TGACAGCGACATTGCTAAAAATCA 59.785 37.500 0.00 0.00 45.23 2.57
754 846 6.618287 TCTCCATGTGTTGAGTTAAAAGTG 57.382 37.500 0.00 0.00 0.00 3.16
1490 1982 1.580845 AACGCAGCCTGCACATCTTC 61.581 55.000 18.21 0.00 45.36 2.87
1630 2164 4.440663 GCTGCAACAAGAGGTTCTTTTTCT 60.441 41.667 0.00 0.00 37.72 2.52
1671 2205 2.437359 GTCCGCAATCAGCAGCCT 60.437 61.111 0.00 0.00 46.13 4.58
1672 2206 2.117156 ATGTCCGCAATCAGCAGCC 61.117 57.895 0.00 0.00 46.13 4.85
1673 2207 1.063649 CATGTCCGCAATCAGCAGC 59.936 57.895 0.00 0.00 46.13 5.25
1674 2208 1.063649 GCATGTCCGCAATCAGCAG 59.936 57.895 0.00 0.00 46.13 4.24
1675 2209 0.961857 AAGCATGTCCGCAATCAGCA 60.962 50.000 0.00 0.00 46.13 4.41
1676 2210 0.171903 AAAGCATGTCCGCAATCAGC 59.828 50.000 0.00 0.00 40.87 4.26
1677 2211 1.468565 CCAAAGCATGTCCGCAATCAG 60.469 52.381 0.00 0.00 0.00 2.90
1678 2212 0.527113 CCAAAGCATGTCCGCAATCA 59.473 50.000 0.00 0.00 0.00 2.57
1679 2213 0.810648 TCCAAAGCATGTCCGCAATC 59.189 50.000 0.00 0.00 0.00 2.67
1680 2214 1.203052 CTTCCAAAGCATGTCCGCAAT 59.797 47.619 0.00 0.00 0.00 3.56
1681 2215 0.597568 CTTCCAAAGCATGTCCGCAA 59.402 50.000 0.00 0.00 0.00 4.85
1682 2216 2.256391 CTTCCAAAGCATGTCCGCA 58.744 52.632 0.00 0.00 0.00 5.69
1692 2226 2.614057 GACGATATGGTGGCTTCCAAAG 59.386 50.000 0.00 2.19 41.09 2.77
1693 2227 2.639065 GACGATATGGTGGCTTCCAAA 58.361 47.619 0.00 0.00 41.09 3.28
1694 2228 1.134220 GGACGATATGGTGGCTTCCAA 60.134 52.381 0.00 0.00 41.09 3.53
1695 2229 0.468226 GGACGATATGGTGGCTTCCA 59.532 55.000 0.00 4.67 42.01 3.53
1696 2230 0.759346 AGGACGATATGGTGGCTTCC 59.241 55.000 0.00 0.00 0.00 3.46
1697 2231 2.213499 CAAGGACGATATGGTGGCTTC 58.787 52.381 0.00 0.00 0.00 3.86
1698 2232 1.134098 CCAAGGACGATATGGTGGCTT 60.134 52.381 0.00 0.00 0.00 4.35
1699 2233 0.469917 CCAAGGACGATATGGTGGCT 59.530 55.000 0.00 0.00 0.00 4.75
1700 2234 0.180406 ACCAAGGACGATATGGTGGC 59.820 55.000 0.00 0.00 45.47 5.01
1701 2235 2.710096 AACCAAGGACGATATGGTGG 57.290 50.000 0.00 0.00 46.46 4.61
1702 2236 3.120792 CGTAACCAAGGACGATATGGTG 58.879 50.000 0.00 0.00 46.46 4.17
1704 2238 2.363038 TCCGTAACCAAGGACGATATGG 59.637 50.000 2.31 0.00 41.60 2.74
1705 2239 3.720949 TCCGTAACCAAGGACGATATG 57.279 47.619 2.31 0.00 41.60 1.78
1706 2240 4.741321 TTTCCGTAACCAAGGACGATAT 57.259 40.909 2.31 0.00 41.60 1.63
1707 2241 4.533919 TTTTCCGTAACCAAGGACGATA 57.466 40.909 2.31 0.00 41.60 2.92
1708 2242 3.405823 TTTTCCGTAACCAAGGACGAT 57.594 42.857 2.31 0.00 41.60 3.73
1709 2243 2.906691 TTTTCCGTAACCAAGGACGA 57.093 45.000 2.31 0.00 41.60 4.20
1710 2244 3.132925 TCTTTTTCCGTAACCAAGGACG 58.867 45.455 0.00 0.00 36.06 4.79
1711 2245 4.261322 GGTTCTTTTTCCGTAACCAAGGAC 60.261 45.833 0.00 0.00 40.89 3.85
1712 2246 3.884693 GGTTCTTTTTCCGTAACCAAGGA 59.115 43.478 0.00 0.00 40.89 3.36
1713 2247 3.887110 AGGTTCTTTTTCCGTAACCAAGG 59.113 43.478 5.93 0.00 43.14 3.61
1714 2248 4.820173 AGAGGTTCTTTTTCCGTAACCAAG 59.180 41.667 5.93 0.00 43.14 3.61
1715 2249 4.784177 AGAGGTTCTTTTTCCGTAACCAA 58.216 39.130 5.93 0.00 43.14 3.67
1716 2250 4.426736 AGAGGTTCTTTTTCCGTAACCA 57.573 40.909 5.93 0.00 43.14 3.67
1717 2251 5.061853 AGAAGAGGTTCTTTTTCCGTAACC 58.938 41.667 0.00 0.00 40.35 2.85
1729 2263 2.903135 ACTAGCTGCAAGAAGAGGTTCT 59.097 45.455 1.02 0.00 45.56 3.01
1730 2264 2.999355 CACTAGCTGCAAGAAGAGGTTC 59.001 50.000 1.02 0.00 34.07 3.62
1731 2265 2.634940 TCACTAGCTGCAAGAAGAGGTT 59.365 45.455 1.02 0.00 34.07 3.50
1732 2266 2.251818 TCACTAGCTGCAAGAAGAGGT 58.748 47.619 1.02 0.00 34.07 3.85
1733 2267 3.260740 CTTCACTAGCTGCAAGAAGAGG 58.739 50.000 14.13 0.00 38.30 3.69
1734 2268 3.056250 TCCTTCACTAGCTGCAAGAAGAG 60.056 47.826 18.37 11.76 38.30 2.85
1735 2269 2.899900 TCCTTCACTAGCTGCAAGAAGA 59.100 45.455 18.37 2.48 38.30 2.87
1736 2270 3.325293 TCCTTCACTAGCTGCAAGAAG 57.675 47.619 1.02 9.07 34.07 2.85
1737 2271 3.668447 CTTCCTTCACTAGCTGCAAGAA 58.332 45.455 1.02 0.00 34.07 2.52
1738 2272 2.613977 GCTTCCTTCACTAGCTGCAAGA 60.614 50.000 1.02 0.00 34.07 3.02
1739 2273 1.736681 GCTTCCTTCACTAGCTGCAAG 59.263 52.381 1.02 0.00 32.26 4.01
1740 2274 1.611673 GGCTTCCTTCACTAGCTGCAA 60.612 52.381 1.02 0.00 35.30 4.08
1741 2275 0.036010 GGCTTCCTTCACTAGCTGCA 60.036 55.000 1.02 0.00 35.30 4.41
1742 2276 0.036010 TGGCTTCCTTCACTAGCTGC 60.036 55.000 0.00 0.00 35.30 5.25
1743 2277 2.027745 TCTTGGCTTCCTTCACTAGCTG 60.028 50.000 0.00 0.00 35.30 4.24
1744 2278 2.260822 TCTTGGCTTCCTTCACTAGCT 58.739 47.619 0.00 0.00 35.30 3.32
1745 2279 2.770164 TCTTGGCTTCCTTCACTAGC 57.230 50.000 0.00 0.00 0.00 3.42
1746 2280 3.937706 CACATCTTGGCTTCCTTCACTAG 59.062 47.826 0.00 0.00 0.00 2.57
1747 2281 3.869912 GCACATCTTGGCTTCCTTCACTA 60.870 47.826 0.00 0.00 0.00 2.74
1748 2282 2.787994 CACATCTTGGCTTCCTTCACT 58.212 47.619 0.00 0.00 0.00 3.41
1749 2283 1.200948 GCACATCTTGGCTTCCTTCAC 59.799 52.381 0.00 0.00 0.00 3.18
1750 2284 1.202915 TGCACATCTTGGCTTCCTTCA 60.203 47.619 0.00 0.00 0.00 3.02
1751 2285 1.471684 CTGCACATCTTGGCTTCCTTC 59.528 52.381 0.00 0.00 0.00 3.46
1752 2286 1.542492 CTGCACATCTTGGCTTCCTT 58.458 50.000 0.00 0.00 0.00 3.36
1753 2287 0.323178 CCTGCACATCTTGGCTTCCT 60.323 55.000 0.00 0.00 0.00 3.36
1754 2288 0.610232 ACCTGCACATCTTGGCTTCC 60.610 55.000 0.00 0.00 0.00 3.46
1755 2289 1.068055 CAACCTGCACATCTTGGCTTC 60.068 52.381 0.00 0.00 0.00 3.86
1756 2290 0.963962 CAACCTGCACATCTTGGCTT 59.036 50.000 0.00 0.00 0.00 4.35
1757 2291 0.178981 ACAACCTGCACATCTTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
1758 2292 0.038892 CACAACCTGCACATCTTGGC 60.039 55.000 0.00 0.00 0.00 4.52
1759 2293 0.038892 GCACAACCTGCACATCTTGG 60.039 55.000 0.00 0.00 46.29 3.61
1760 2294 3.484524 GCACAACCTGCACATCTTG 57.515 52.632 0.00 0.00 46.29 3.02
1919 2465 4.099419 AGGTGCTTTTTCAGTAACCAAAGG 59.901 41.667 0.00 0.00 35.04 3.11
1950 2496 1.133253 CAGTTGTGCGATTCAGCCG 59.867 57.895 0.00 0.00 36.02 5.52
1972 2695 1.954362 GCGCTGATGTGGGAGAGAGT 61.954 60.000 0.00 0.00 0.00 3.24
1974 2697 1.683707 AGCGCTGATGTGGGAGAGA 60.684 57.895 10.39 0.00 0.00 3.10
1992 2715 6.023603 GGATAGAGGAATATACTGGGGAACA 58.976 44.000 0.00 0.00 0.00 3.18
2024 2749 6.052360 TGCAAGATAAACACAGAACTGTACA 58.948 36.000 7.15 0.00 42.83 2.90
2033 2758 5.215160 GGACTGTTTGCAAGATAAACACAG 58.785 41.667 18.89 18.89 41.57 3.66
2296 3023 4.547166 TGGCAGCTCTTCCAGAGA 57.453 55.556 4.89 0.00 45.07 3.10
2402 3129 3.256704 TCAAACCTAGGACTTGTCCCAT 58.743 45.455 17.98 1.86 0.00 4.00
2513 3240 0.807667 CCGAGGATGCTTGACCTTCG 60.808 60.000 2.41 0.00 36.57 3.79
2561 3288 5.408604 AGCTTCGTTACAAACATAGGACTTG 59.591 40.000 0.00 0.00 0.00 3.16
2570 3297 5.065346 TGACATTCAAGCTTCGTTACAAACA 59.935 36.000 0.00 0.00 0.00 2.83
2578 3647 4.393062 CCTGTTATGACATTCAAGCTTCGT 59.607 41.667 0.00 0.00 34.72 3.85
2583 3652 3.019564 AGGCCTGTTATGACATTCAAGC 58.980 45.455 3.11 0.00 34.72 4.01
2584 3653 5.404946 CAAAGGCCTGTTATGACATTCAAG 58.595 41.667 5.69 0.00 34.72 3.02
2585 3654 4.220382 CCAAAGGCCTGTTATGACATTCAA 59.780 41.667 5.69 0.00 34.72 2.69
2586 3655 3.763360 CCAAAGGCCTGTTATGACATTCA 59.237 43.478 5.69 0.00 34.72 2.57
2587 3656 4.016444 TCCAAAGGCCTGTTATGACATTC 58.984 43.478 5.69 0.00 34.72 2.67
2588 3657 4.046286 TCCAAAGGCCTGTTATGACATT 57.954 40.909 5.69 0.00 34.72 2.71
2589 3658 3.737559 TCCAAAGGCCTGTTATGACAT 57.262 42.857 5.69 0.00 34.72 3.06
2590 3659 3.073798 TCTTCCAAAGGCCTGTTATGACA 59.926 43.478 5.69 0.00 0.00 3.58
2591 3660 3.686016 TCTTCCAAAGGCCTGTTATGAC 58.314 45.455 5.69 0.00 0.00 3.06
2592 3661 3.873801 GCTCTTCCAAAGGCCTGTTATGA 60.874 47.826 5.69 0.00 0.00 2.15
2593 3662 2.424956 GCTCTTCCAAAGGCCTGTTATG 59.575 50.000 5.69 3.30 0.00 1.90
2594 3663 2.310052 AGCTCTTCCAAAGGCCTGTTAT 59.690 45.455 5.69 0.00 0.00 1.89
2595 3664 1.705186 AGCTCTTCCAAAGGCCTGTTA 59.295 47.619 5.69 0.00 0.00 2.41
2596 3665 0.480252 AGCTCTTCCAAAGGCCTGTT 59.520 50.000 5.69 0.00 0.00 3.16
2597 3666 0.251077 CAGCTCTTCCAAAGGCCTGT 60.251 55.000 5.69 0.00 0.00 4.00
2598 3667 1.593296 GCAGCTCTTCCAAAGGCCTG 61.593 60.000 5.69 0.00 33.28 4.85
2599 3668 1.303970 GCAGCTCTTCCAAAGGCCT 60.304 57.895 0.00 0.00 0.00 5.19
2600 3669 2.346541 GGCAGCTCTTCCAAAGGCC 61.347 63.158 0.00 0.00 0.00 5.19
2601 3670 1.593296 CTGGCAGCTCTTCCAAAGGC 61.593 60.000 0.00 0.00 30.98 4.35
2602 3671 1.593296 GCTGGCAGCTCTTCCAAAGG 61.593 60.000 31.37 0.00 38.45 3.11
2603 3672 1.593296 GGCTGGCAGCTCTTCCAAAG 61.593 60.000 35.73 0.00 41.99 2.77
2604 3673 1.604593 GGCTGGCAGCTCTTCCAAA 60.605 57.895 35.73 0.00 41.99 3.28
2605 3674 2.034687 GGCTGGCAGCTCTTCCAA 59.965 61.111 35.73 0.00 41.99 3.53
2606 3675 4.399395 CGGCTGGCAGCTCTTCCA 62.399 66.667 35.73 0.00 41.99 3.53
2607 3676 4.087892 TCGGCTGGCAGCTCTTCC 62.088 66.667 35.73 19.53 41.99 3.46
2608 3677 2.511145 CTCGGCTGGCAGCTCTTC 60.511 66.667 35.73 19.90 41.99 2.87
2609 3678 4.093291 CCTCGGCTGGCAGCTCTT 62.093 66.667 35.73 0.00 41.99 2.85
2624 3693 2.989480 CCTTCAGAGGTCAGAGCCT 58.011 57.895 0.00 0.00 42.53 4.58
2634 3703 3.008330 CTCTTCATTGCCACCTTCAGAG 58.992 50.000 0.00 0.00 0.00 3.35
2635 3704 2.877300 GCTCTTCATTGCCACCTTCAGA 60.877 50.000 0.00 0.00 0.00 3.27
2636 3705 1.471684 GCTCTTCATTGCCACCTTCAG 59.528 52.381 0.00 0.00 0.00 3.02
2637 3706 1.074405 AGCTCTTCATTGCCACCTTCA 59.926 47.619 0.00 0.00 0.00 3.02
2638 3707 1.471684 CAGCTCTTCATTGCCACCTTC 59.528 52.381 0.00 0.00 0.00 3.46
2639 3708 1.542492 CAGCTCTTCATTGCCACCTT 58.458 50.000 0.00 0.00 0.00 3.50
2640 3709 0.323178 CCAGCTCTTCATTGCCACCT 60.323 55.000 0.00 0.00 0.00 4.00
2641 3710 0.610232 ACCAGCTCTTCATTGCCACC 60.610 55.000 0.00 0.00 0.00 4.61
2642 3711 0.524862 CACCAGCTCTTCATTGCCAC 59.475 55.000 0.00 0.00 0.00 5.01
2643 3712 0.401356 TCACCAGCTCTTCATTGCCA 59.599 50.000 0.00 0.00 0.00 4.92
2644 3713 1.093159 CTCACCAGCTCTTCATTGCC 58.907 55.000 0.00 0.00 0.00 4.52
2645 3714 2.008329 CTCTCACCAGCTCTTCATTGC 58.992 52.381 0.00 0.00 0.00 3.56
2646 3715 2.630158 CCTCTCACCAGCTCTTCATTG 58.370 52.381 0.00 0.00 0.00 2.82
2647 3716 1.558756 CCCTCTCACCAGCTCTTCATT 59.441 52.381 0.00 0.00 0.00 2.57
2648 3717 1.202330 CCCTCTCACCAGCTCTTCAT 58.798 55.000 0.00 0.00 0.00 2.57
2649 3718 0.115152 TCCCTCTCACCAGCTCTTCA 59.885 55.000 0.00 0.00 0.00 3.02
2650 3719 1.206849 CTTCCCTCTCACCAGCTCTTC 59.793 57.143 0.00 0.00 0.00 2.87
2651 3720 1.274712 CTTCCCTCTCACCAGCTCTT 58.725 55.000 0.00 0.00 0.00 2.85
2652 3721 1.264045 GCTTCCCTCTCACCAGCTCT 61.264 60.000 0.00 0.00 0.00 4.09
2653 3722 1.220477 GCTTCCCTCTCACCAGCTC 59.780 63.158 0.00 0.00 0.00 4.09
2654 3723 1.229464 AGCTTCCCTCTCACCAGCT 60.229 57.895 0.00 0.00 35.95 4.24
2655 3724 1.078567 CAGCTTCCCTCTCACCAGC 60.079 63.158 0.00 0.00 0.00 4.85
2656 3725 0.979665 TTCAGCTTCCCTCTCACCAG 59.020 55.000 0.00 0.00 0.00 4.00
2657 3726 1.072331 GTTTCAGCTTCCCTCTCACCA 59.928 52.381 0.00 0.00 0.00 4.17
2658 3727 1.072331 TGTTTCAGCTTCCCTCTCACC 59.928 52.381 0.00 0.00 0.00 4.02
2659 3728 2.550830 TGTTTCAGCTTCCCTCTCAC 57.449 50.000 0.00 0.00 0.00 3.51
2660 3729 2.026822 GGATGTTTCAGCTTCCCTCTCA 60.027 50.000 0.00 0.00 0.00 3.27
2661 3730 2.238395 AGGATGTTTCAGCTTCCCTCTC 59.762 50.000 0.00 0.00 34.36 3.20
2662 3731 2.273619 AGGATGTTTCAGCTTCCCTCT 58.726 47.619 0.00 0.00 34.36 3.69
2663 3732 2.797177 AGGATGTTTCAGCTTCCCTC 57.203 50.000 0.00 0.00 34.36 4.30
2664 3733 2.093447 CGTAGGATGTTTCAGCTTCCCT 60.093 50.000 0.00 0.00 34.36 4.20
2665 3734 2.093658 TCGTAGGATGTTTCAGCTTCCC 60.094 50.000 0.00 0.00 34.36 3.97
2666 3735 3.247006 TCGTAGGATGTTTCAGCTTCC 57.753 47.619 0.00 0.00 34.13 3.46
2667 3736 4.495422 TCTTCGTAGGATGTTTCAGCTTC 58.505 43.478 0.00 0.00 0.00 3.86
2668 3737 4.537135 TCTTCGTAGGATGTTTCAGCTT 57.463 40.909 0.00 0.00 0.00 3.74
2669 3738 4.021016 AGTTCTTCGTAGGATGTTTCAGCT 60.021 41.667 0.00 0.00 0.00 4.24
2670 3739 4.246458 AGTTCTTCGTAGGATGTTTCAGC 58.754 43.478 0.00 0.00 0.00 4.26
2671 3740 5.805994 GGTAGTTCTTCGTAGGATGTTTCAG 59.194 44.000 0.00 0.00 0.00 3.02
2672 3741 5.244402 TGGTAGTTCTTCGTAGGATGTTTCA 59.756 40.000 0.00 0.00 0.00 2.69
2673 3742 5.717119 TGGTAGTTCTTCGTAGGATGTTTC 58.283 41.667 0.00 0.00 0.00 2.78
2674 3743 5.733620 TGGTAGTTCTTCGTAGGATGTTT 57.266 39.130 0.00 0.00 0.00 2.83
2675 3744 5.661458 CATGGTAGTTCTTCGTAGGATGTT 58.339 41.667 0.00 0.00 0.00 2.71
2676 3745 4.441634 GCATGGTAGTTCTTCGTAGGATGT 60.442 45.833 0.00 0.00 0.00 3.06
2677 3746 4.051922 GCATGGTAGTTCTTCGTAGGATG 58.948 47.826 0.00 0.00 0.00 3.51
2678 3747 3.961408 AGCATGGTAGTTCTTCGTAGGAT 59.039 43.478 0.00 0.00 0.00 3.24
2679 3748 3.130516 CAGCATGGTAGTTCTTCGTAGGA 59.869 47.826 0.00 0.00 0.00 2.94
2680 3749 3.448686 CAGCATGGTAGTTCTTCGTAGG 58.551 50.000 0.00 0.00 0.00 3.18
2727 3796 2.476619 ACGACAATCAAGCTTCTGTTCG 59.523 45.455 0.00 4.25 0.00 3.95
2747 3816 0.391263 CTCTTCCACAGGCCCGTTAC 60.391 60.000 0.00 0.00 0.00 2.50
2804 3873 1.352083 CTTCCCTCTCACCAACTCCA 58.648 55.000 0.00 0.00 0.00 3.86
2886 3955 4.218417 GGCCCGTTATGATATTCATGCTTT 59.782 41.667 0.00 0.00 37.70 3.51
2891 3960 4.326826 CACAGGCCCGTTATGATATTCAT 58.673 43.478 0.00 0.00 40.72 2.57
2895 3964 2.334977 TCCACAGGCCCGTTATGATAT 58.665 47.619 0.00 0.00 0.00 1.63
2897 3966 0.916086 TTCCACAGGCCCGTTATGAT 59.084 50.000 0.00 0.00 0.00 2.45
2900 3969 0.541863 CTCTTCCACAGGCCCGTTAT 59.458 55.000 0.00 0.00 0.00 1.89
2913 3982 1.743252 CTCGGTTGGCAGCTCTTCC 60.743 63.158 0.24 0.00 0.00 3.46
2939 4008 2.383527 GCGTCGCCAACTTCAGAGG 61.384 63.158 5.75 0.00 0.00 3.69
2940 4009 2.720758 CGCGTCGCCAACTTCAGAG 61.721 63.158 12.44 0.00 0.00 3.35
2955 4024 4.504916 CCTCTCACCAGCTCCGCG 62.505 72.222 0.00 0.00 0.00 6.46
2962 4031 0.979665 TTCAGCTTCCCTCTCACCAG 59.020 55.000 0.00 0.00 0.00 4.00
2977 4046 5.875359 GGTAGTTGTTCCTAGGATGTTTCAG 59.125 44.000 13.57 0.00 0.00 3.02
2984 4053 2.772515 GCAGGGTAGTTGTTCCTAGGAT 59.227 50.000 13.57 0.00 0.00 3.24
2990 4059 0.960861 GCCAGCAGGGTAGTTGTTCC 60.961 60.000 0.00 0.00 39.65 3.62
2994 4063 0.674895 GAGTGCCAGCAGGGTAGTTG 60.675 60.000 0.00 0.00 34.71 3.16
3002 4071 1.260538 TGTCCTAGGAGTGCCAGCAG 61.261 60.000 13.15 0.00 36.29 4.24
3004 4073 0.107945 CTTGTCCTAGGAGTGCCAGC 60.108 60.000 13.15 0.00 36.29 4.85
3044 4569 4.991056 CCATAGACCCGTTATGACATTCAG 59.009 45.833 0.00 0.00 31.59 3.02
3064 4650 0.034186 TCGGCTGGCATTTCTTCCAT 60.034 50.000 1.08 0.00 0.00 3.41
3187 4886 3.414549 ACGACATTCACGCTTTGTTTT 57.585 38.095 0.00 0.00 0.00 2.43
3461 5171 4.660168 ACCTTAGTTCAGAGAGTCGGTAA 58.340 43.478 0.00 0.00 0.00 2.85
3488 5198 6.604171 AGTTTCATGGGCATCATATTCAGTA 58.396 36.000 0.00 0.00 34.12 2.74
3620 5335 3.450457 TGGATTTGGTGCAATGGGAATAC 59.550 43.478 0.00 0.00 0.00 1.89
3693 5408 5.751680 ACATTATATCGCAGAAATGCACAC 58.248 37.500 0.00 0.00 43.58 3.82
4120 5913 2.654863 ACAGTTCCAACCTCCACAAAG 58.345 47.619 0.00 0.00 0.00 2.77
4122 5915 4.447138 AATACAGTTCCAACCTCCACAA 57.553 40.909 0.00 0.00 0.00 3.33
4139 5932 3.187700 CCCTGTGAGCACGACTAAATAC 58.812 50.000 0.00 0.00 0.00 1.89
4148 5941 1.737793 GTAAATTCCCCTGTGAGCACG 59.262 52.381 0.00 0.00 0.00 5.34
4243 6048 0.392193 ATGCTCAGGCTCGGAACTTG 60.392 55.000 0.00 0.00 39.59 3.16
4382 6187 0.923358 ACAACACCCCTGTCCTGAAA 59.077 50.000 0.00 0.00 0.00 2.69
4585 6405 6.882610 TCAAGTCTTTTGTGTGCTCATAAT 57.117 33.333 0.00 0.00 0.00 1.28
4587 6407 5.335113 GCATCAAGTCTTTTGTGTGCTCATA 60.335 40.000 0.00 0.00 33.16 2.15
4588 6408 4.558095 GCATCAAGTCTTTTGTGTGCTCAT 60.558 41.667 0.00 0.00 33.16 2.90
4589 6409 3.243168 GCATCAAGTCTTTTGTGTGCTCA 60.243 43.478 10.44 0.00 33.16 4.26
4590 6410 3.004106 AGCATCAAGTCTTTTGTGTGCTC 59.996 43.478 12.90 0.00 37.66 4.26
4592 6412 3.360249 AGCATCAAGTCTTTTGTGTGC 57.640 42.857 9.99 9.99 34.72 4.57
4593 6413 6.064846 AGTTAGCATCAAGTCTTTTGTGTG 57.935 37.500 0.00 0.00 0.00 3.82
4594 6414 7.661437 TCATAGTTAGCATCAAGTCTTTTGTGT 59.339 33.333 0.00 0.00 0.00 3.72
4598 6418 6.036517 CGCTCATAGTTAGCATCAAGTCTTTT 59.963 38.462 0.00 0.00 40.08 2.27
4599 6419 5.521735 CGCTCATAGTTAGCATCAAGTCTTT 59.478 40.000 0.00 0.00 40.08 2.52
4600 6420 5.046529 CGCTCATAGTTAGCATCAAGTCTT 58.953 41.667 0.00 0.00 40.08 3.01
4601 6421 4.098654 ACGCTCATAGTTAGCATCAAGTCT 59.901 41.667 0.00 0.00 40.08 3.24
4602 6422 4.208047 CACGCTCATAGTTAGCATCAAGTC 59.792 45.833 0.00 0.00 40.08 3.01
4603 6423 4.115516 CACGCTCATAGTTAGCATCAAGT 58.884 43.478 0.00 0.00 40.08 3.16
4609 6429 4.994852 AGTTTTTCACGCTCATAGTTAGCA 59.005 37.500 0.00 0.00 40.08 3.49
4611 6431 7.117241 TGAAGTTTTTCACGCTCATAGTTAG 57.883 36.000 0.00 0.00 38.37 2.34
4614 6434 6.560253 AATGAAGTTTTTCACGCTCATAGT 57.440 33.333 0.00 0.00 45.54 2.12
4615 6435 7.805071 AGAAAATGAAGTTTTTCACGCTCATAG 59.195 33.333 11.07 0.00 45.54 2.23
4616 6436 7.648142 AGAAAATGAAGTTTTTCACGCTCATA 58.352 30.769 11.07 0.00 45.54 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.