Multiple sequence alignment - TraesCS3D01G015800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G015800 chr3D 100.000 3547 0 0 1 3547 5616434 5612888 0.000000e+00 6551.0
1 TraesCS3D01G015800 chr3D 87.810 525 48 9 1350 1873 5631649 5631140 5.070000e-168 601.0
2 TraesCS3D01G015800 chr3D 85.988 521 51 13 1350 1864 41607783 41608287 4.030000e-149 538.0
3 TraesCS3D01G015800 chr3D 91.667 120 7 2 194 310 383544157 383544038 2.830000e-36 163.0
4 TraesCS3D01G015800 chr3D 84.868 152 18 4 3262 3409 567132520 567132370 7.930000e-32 148.0
5 TraesCS3D01G015800 chr3A 93.103 1769 92 20 1466 3224 15690971 15692719 0.000000e+00 2564.0
6 TraesCS3D01G015800 chr3A 88.320 899 74 13 478 1371 15701105 15701977 0.000000e+00 1050.0
7 TraesCS3D01G015800 chr3A 81.053 1140 127 42 2117 3208 15702845 15703943 0.000000e+00 826.0
8 TraesCS3D01G015800 chr3A 80.300 1066 126 40 2120 3140 15560054 15559028 0.000000e+00 728.0
9 TraesCS3D01G015800 chr3A 90.074 544 54 0 834 1377 15561460 15560917 0.000000e+00 706.0
10 TraesCS3D01G015800 chr3A 90.526 475 41 2 901 1371 15690183 15690657 3.010000e-175 625.0
11 TraesCS3D01G015800 chr3A 85.127 511 64 10 1695 2199 15690739 15691243 2.440000e-141 512.0
12 TraesCS3D01G015800 chr3A 89.604 202 12 2 1 193 15700772 15700973 7.600000e-62 248.0
13 TraesCS3D01G015800 chr3A 80.757 317 38 8 3232 3542 57494637 57494936 3.560000e-55 226.0
14 TraesCS3D01G015800 chr3A 89.726 146 12 3 315 459 15700972 15701115 2.170000e-42 183.0
15 TraesCS3D01G015800 chr3A 100.000 30 0 0 818 847 15614049 15614020 4.950000e-04 56.5
16 TraesCS3D01G015800 chr3B 96.673 1473 45 4 885 2355 12319178 12320648 0.000000e+00 2446.0
17 TraesCS3D01G015800 chr3B 83.565 864 91 27 2304 3140 12320651 12321490 0.000000e+00 761.0
18 TraesCS3D01G015800 chr3B 77.991 468 92 9 1349 1813 12149327 12149786 2.080000e-72 283.0
19 TraesCS3D01G015800 chrUn 91.737 1767 107 22 1473 3228 35261414 35259676 0.000000e+00 2418.0
20 TraesCS3D01G015800 chrUn 91.737 1767 107 22 1473 3228 35264251 35262513 0.000000e+00 2418.0
21 TraesCS3D01G015800 chrUn 88.758 934 73 15 315 1242 35064254 35063347 0.000000e+00 1114.0
22 TraesCS3D01G015800 chrUn 81.132 1060 122 37 2120 3140 35062775 35061755 0.000000e+00 778.0
23 TraesCS3D01G015800 chrUn 87.785 483 52 5 916 1391 35265031 35264549 3.090000e-155 558.0
24 TraesCS3D01G015800 chrUn 86.074 517 55 9 1350 1865 35423460 35423960 1.120000e-149 540.0
25 TraesCS3D01G015800 chrUn 85.519 511 62 11 1695 2199 35261653 35261149 1.130000e-144 523.0
26 TraesCS3D01G015800 chrUn 85.519 511 62 11 1695 2199 35264490 35263986 1.130000e-144 523.0
27 TraesCS3D01G015800 chrUn 89.412 340 33 3 1055 1391 35262051 35261712 3.270000e-115 425.0
28 TraesCS3D01G015800 chrUn 78.923 427 80 8 1349 1773 445627471 445627053 7.500000e-72 281.0
29 TraesCS3D01G015800 chrUn 88.837 215 21 3 1180 1391 35063451 35063237 9.770000e-66 261.0
30 TraesCS3D01G015800 chrUn 81.212 330 44 6 3229 3547 314774052 314773730 2.110000e-62 250.0
31 TraesCS3D01G015800 chrUn 81.212 330 44 6 3229 3547 347953085 347953407 2.110000e-62 250.0
32 TraesCS3D01G015800 chrUn 81.212 330 44 6 3229 3547 351792199 351792521 2.110000e-62 250.0
33 TraesCS3D01G015800 chrUn 81.724 290 45 7 1912 2197 445627369 445627084 5.920000e-58 235.0
34 TraesCS3D01G015800 chrUn 81.724 290 45 7 1912 2197 462773661 462773376 5.920000e-58 235.0
35 TraesCS3D01G015800 chrUn 88.333 180 21 0 1173 1352 35063281 35063102 2.140000e-52 217.0
36 TraesCS3D01G015800 chrUn 95.455 110 5 0 1 110 35064474 35064365 3.640000e-40 176.0
37 TraesCS3D01G015800 chrUn 87.143 140 16 2 1214 1352 35423417 35423555 1.320000e-34 158.0
38 TraesCS3D01G015800 chrUn 89.516 124 13 0 196 319 272240751 272240628 1.320000e-34 158.0
39 TraesCS3D01G015800 chr5D 86.688 308 38 1 3243 3547 528396222 528396529 4.390000e-89 339.0
40 TraesCS3D01G015800 chr4B 84.326 319 50 0 3229 3547 393511033 393511351 2.660000e-81 313.0
41 TraesCS3D01G015800 chr4B 93.333 45 2 1 1817 1860 527960012 527959968 8.220000e-07 65.8
42 TraesCS3D01G015800 chr6A 78.438 320 54 7 3235 3547 615790080 615790391 1.000000e-45 195.0
43 TraesCS3D01G015800 chr6A 87.786 131 16 0 194 324 96988474 96988604 1.710000e-33 154.0
44 TraesCS3D01G015800 chr1D 79.016 305 40 13 3229 3524 435267687 435267976 1.680000e-43 187.0
45 TraesCS3D01G015800 chr7D 93.496 123 8 0 194 316 93783203 93783325 2.170000e-42 183.0
46 TraesCS3D01G015800 chr7D 85.315 143 19 2 184 325 534359218 534359359 2.850000e-31 147.0
47 TraesCS3D01G015800 chr2A 89.474 133 10 2 194 325 445714998 445714869 7.880000e-37 165.0
48 TraesCS3D01G015800 chr6D 87.770 139 14 3 194 329 7565205 7565343 3.670000e-35 159.0
49 TraesCS3D01G015800 chr2B 89.147 129 11 2 192 320 373758811 373758686 1.320000e-34 158.0
50 TraesCS3D01G015800 chr2D 88.889 126 11 1 194 316 17208522 17208647 6.130000e-33 152.0
51 TraesCS3D01G015800 chr5B 93.333 45 2 1 1817 1860 562105820 562105864 8.220000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G015800 chr3D 5612888 5616434 3546 True 6551.000000 6551 100.000000 1 3547 1 chr3D.!!$R1 3546
1 TraesCS3D01G015800 chr3D 5631140 5631649 509 True 601.000000 601 87.810000 1350 1873 1 chr3D.!!$R2 523
2 TraesCS3D01G015800 chr3D 41607783 41608287 504 False 538.000000 538 85.988000 1350 1864 1 chr3D.!!$F1 514
3 TraesCS3D01G015800 chr3A 15690183 15692719 2536 False 1233.666667 2564 89.585333 901 3224 3 chr3A.!!$F2 2323
4 TraesCS3D01G015800 chr3A 15559028 15561460 2432 True 717.000000 728 85.187000 834 3140 2 chr3A.!!$R2 2306
5 TraesCS3D01G015800 chr3A 15700772 15703943 3171 False 576.750000 1050 87.175750 1 3208 4 chr3A.!!$F3 3207
6 TraesCS3D01G015800 chr3B 12319178 12321490 2312 False 1603.500000 2446 90.119000 885 3140 2 chr3B.!!$F2 2255
7 TraesCS3D01G015800 chrUn 35259676 35265031 5355 True 1144.166667 2418 88.618167 916 3228 6 chrUn.!!$R5 2312
8 TraesCS3D01G015800 chrUn 35061755 35064474 2719 True 509.200000 1114 88.503000 1 3140 5 chrUn.!!$R4 3139
9 TraesCS3D01G015800 chrUn 35423417 35423960 543 False 349.000000 540 86.608500 1214 1865 2 chrUn.!!$F3 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 1.004745 TCAGGACCCTGAGATTTTGCC 59.995 52.381 14.37 0.0 46.8 4.52 F
1228 1274 0.660488 CGTGTTTGTTGCAGCCAGTA 59.340 50.000 0.00 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1334 2.129555 AAAGCATGTCCGGGCTCAGT 62.130 55.0 7.97 0.0 40.01 3.41 R
2631 6167 0.106819 ATGCAGAGAGATGGGGCAAC 60.107 55.0 0.00 0.0 38.08 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.004745 TCAGGACCCTGAGATTTTGCC 59.995 52.381 14.37 0.00 46.80 4.52
124 154 7.730364 TGTTGAGTTTAGATCTTTGAACTCC 57.270 36.000 26.54 18.92 44.50 3.85
135 165 7.234355 AGATCTTTGAACTCCCACACTAAAAT 58.766 34.615 0.00 0.00 0.00 1.82
143 173 6.903340 ACTCCCACACTAAAATATAGGGTT 57.097 37.500 0.00 0.00 36.24 4.11
149 179 6.771267 CCACACTAAAATATAGGGTTCCCTTC 59.229 42.308 16.05 0.00 37.64 3.46
191 221 2.158559 TGGCTGCACGACAATAATGTT 58.841 42.857 0.50 0.00 40.74 2.71
192 222 3.339141 TGGCTGCACGACAATAATGTTA 58.661 40.909 0.50 0.00 40.74 2.41
193 223 3.126171 TGGCTGCACGACAATAATGTTAC 59.874 43.478 0.50 0.00 40.74 2.50
194 224 3.486875 GGCTGCACGACAATAATGTTACC 60.487 47.826 0.50 0.00 40.74 2.85
195 225 3.486875 GCTGCACGACAATAATGTTACCC 60.487 47.826 0.00 0.00 40.74 3.69
196 226 3.938963 CTGCACGACAATAATGTTACCCT 59.061 43.478 0.00 0.00 40.74 4.34
197 227 3.936453 TGCACGACAATAATGTTACCCTC 59.064 43.478 0.00 0.00 40.74 4.30
198 228 4.189231 GCACGACAATAATGTTACCCTCT 58.811 43.478 0.00 0.00 40.74 3.69
199 229 4.034048 GCACGACAATAATGTTACCCTCTG 59.966 45.833 0.00 0.00 40.74 3.35
200 230 5.416083 CACGACAATAATGTTACCCTCTGA 58.584 41.667 0.00 0.00 40.74 3.27
201 231 6.049149 CACGACAATAATGTTACCCTCTGAT 58.951 40.000 0.00 0.00 40.74 2.90
202 232 6.201044 CACGACAATAATGTTACCCTCTGATC 59.799 42.308 0.00 0.00 40.74 2.92
203 233 5.696724 CGACAATAATGTTACCCTCTGATCC 59.303 44.000 0.00 0.00 40.74 3.36
204 234 6.575244 ACAATAATGTTACCCTCTGATCCA 57.425 37.500 0.00 0.00 35.91 3.41
205 235 7.154191 ACAATAATGTTACCCTCTGATCCAT 57.846 36.000 0.00 0.00 35.91 3.41
206 236 8.275187 ACAATAATGTTACCCTCTGATCCATA 57.725 34.615 0.00 0.00 35.91 2.74
207 237 8.894592 ACAATAATGTTACCCTCTGATCCATAT 58.105 33.333 0.00 0.00 35.91 1.78
208 238 9.745018 CAATAATGTTACCCTCTGATCCATATT 57.255 33.333 0.00 0.00 0.00 1.28
211 241 8.511748 AATGTTACCCTCTGATCCATATTACT 57.488 34.615 0.00 0.00 0.00 2.24
212 242 7.931015 TGTTACCCTCTGATCCATATTACTT 57.069 36.000 0.00 0.00 0.00 2.24
213 243 9.615660 ATGTTACCCTCTGATCCATATTACTTA 57.384 33.333 0.00 0.00 0.00 2.24
214 244 9.615660 TGTTACCCTCTGATCCATATTACTTAT 57.384 33.333 0.00 0.00 0.00 1.73
217 247 8.980832 ACCCTCTGATCCATATTACTTATCTT 57.019 34.615 0.00 0.00 0.00 2.40
239 269 8.693120 TCTTAGATTTGTCTAGATACGGATGT 57.307 34.615 0.00 0.00 0.00 3.06
240 270 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
243 273 8.410673 AGATTTGTCTAGATACGGATGTATGT 57.589 34.615 0.00 0.00 41.37 2.29
244 274 9.516546 AGATTTGTCTAGATACGGATGTATGTA 57.483 33.333 0.00 0.00 41.37 2.29
250 280 5.608676 AGATACGGATGTATGTAGACACG 57.391 43.478 0.00 0.00 41.37 4.49
251 281 5.061853 AGATACGGATGTATGTAGACACGT 58.938 41.667 0.00 0.00 41.37 4.49
252 282 5.530171 AGATACGGATGTATGTAGACACGTT 59.470 40.000 0.00 0.00 41.37 3.99
253 283 4.445452 ACGGATGTATGTAGACACGTTT 57.555 40.909 0.00 0.00 30.52 3.60
254 284 4.813027 ACGGATGTATGTAGACACGTTTT 58.187 39.130 0.00 0.00 30.52 2.43
255 285 5.953183 ACGGATGTATGTAGACACGTTTTA 58.047 37.500 0.00 0.00 30.52 1.52
256 286 6.032094 ACGGATGTATGTAGACACGTTTTAG 58.968 40.000 0.00 0.00 30.52 1.85
257 287 6.032094 CGGATGTATGTAGACACGTTTTAGT 58.968 40.000 0.00 0.00 30.52 2.24
258 288 6.020916 CGGATGTATGTAGACACGTTTTAGTG 60.021 42.308 0.00 0.00 46.83 2.74
271 301 6.013085 CACGTTTTAGTGTTTGATACATCCG 58.987 40.000 0.00 0.00 39.39 4.18
272 302 5.697633 ACGTTTTAGTGTTTGATACATCCGT 59.302 36.000 0.00 0.00 39.39 4.69
273 303 6.867816 ACGTTTTAGTGTTTGATACATCCGTA 59.132 34.615 0.00 0.00 39.39 4.02
274 304 7.546667 ACGTTTTAGTGTTTGATACATCCGTAT 59.453 33.333 0.00 0.00 41.16 3.06
291 321 9.005777 ACATCCGTATCTAGAGAAATCTAAGAC 57.994 37.037 0.00 0.00 0.00 3.01
292 322 9.004717 CATCCGTATCTAGAGAAATCTAAGACA 57.995 37.037 0.00 0.00 0.00 3.41
293 323 8.975663 TCCGTATCTAGAGAAATCTAAGACAA 57.024 34.615 0.00 0.00 0.00 3.18
294 324 9.058174 TCCGTATCTAGAGAAATCTAAGACAAG 57.942 37.037 0.00 0.00 0.00 3.16
295 325 8.842280 CCGTATCTAGAGAAATCTAAGACAAGT 58.158 37.037 0.00 0.00 0.00 3.16
307 337 9.712305 AAATCTAAGACAAGTAATATGGATCGG 57.288 33.333 0.00 0.00 0.00 4.18
308 338 8.651589 ATCTAAGACAAGTAATATGGATCGGA 57.348 34.615 0.00 0.00 0.00 4.55
309 339 8.112016 TCTAAGACAAGTAATATGGATCGGAG 57.888 38.462 0.00 0.00 0.00 4.63
310 340 5.730296 AGACAAGTAATATGGATCGGAGG 57.270 43.478 0.00 0.00 0.00 4.30
311 341 4.528596 AGACAAGTAATATGGATCGGAGGG 59.471 45.833 0.00 0.00 0.00 4.30
312 342 4.489737 ACAAGTAATATGGATCGGAGGGA 58.510 43.478 0.00 0.00 0.00 4.20
313 343 4.528596 ACAAGTAATATGGATCGGAGGGAG 59.471 45.833 0.00 0.00 0.00 4.30
329 359 6.070424 TCGGAGGGAGTAGTAAATTTGTCATT 60.070 38.462 0.00 0.00 0.00 2.57
450 484 5.373262 GCAAAATTAACGGTTGATTGCTTG 58.627 37.500 11.08 12.76 38.79 4.01
458 492 3.815401 ACGGTTGATTGCTTGGATATAGC 59.185 43.478 0.00 0.00 39.10 2.97
502 536 8.596781 TTAGTATCTCAACTCTTAAAGAGGCT 57.403 34.615 0.00 0.00 46.45 4.58
509 543 7.873505 TCTCAACTCTTAAAGAGGCTTAAGTTC 59.126 37.037 4.02 2.89 46.45 3.01
519 553 4.021016 AGAGGCTTAAGTTCACGATTCAGT 60.021 41.667 4.02 0.00 0.00 3.41
521 555 5.411781 AGGCTTAAGTTCACGATTCAGTAG 58.588 41.667 4.02 0.00 0.00 2.57
590 626 4.927425 TGTTTCTAACGGAAGGATTTCTCG 59.073 41.667 0.00 0.00 35.16 4.04
592 628 3.359033 TCTAACGGAAGGATTTCTCGGA 58.641 45.455 0.00 0.00 33.86 4.55
597 633 2.094182 CGGAAGGATTTCTCGGAGTCAA 60.094 50.000 4.69 0.10 33.68 3.18
604 640 2.509052 TTCTCGGAGTCAACTGTGTG 57.491 50.000 4.69 0.00 0.00 3.82
652 688 5.343058 CAGCATGGATTTGTTTTGACTTACG 59.657 40.000 0.00 0.00 0.00 3.18
708 744 3.955650 AACGTAGTATCAGCACAAGGT 57.044 42.857 0.00 0.00 45.00 3.50
856 895 5.072741 TCAGCATACCTTTTCAGCTTTTCT 58.927 37.500 0.00 0.00 32.35 2.52
861 900 4.926140 ACCTTTTCAGCTTTTCTCCTTG 57.074 40.909 0.00 0.00 0.00 3.61
1053 1096 8.801299 AGTGATGATGATATTATCGACTTGAGT 58.199 33.333 3.30 0.00 0.00 3.41
1228 1274 0.660488 CGTGTTTGTTGCAGCCAGTA 59.340 50.000 0.00 0.00 0.00 2.74
1549 2001 5.112220 ACAGTTGTGTGTTTATCATGCAG 57.888 39.130 0.00 0.00 34.75 4.41
1570 4860 5.298777 GCAGAAGATCCATATCAAGCAAACT 59.701 40.000 0.00 0.00 34.28 2.66
1575 4865 4.319333 GATCCATATCAAGCAAACTCTGCG 60.319 45.833 0.00 0.00 42.91 5.18
1620 4910 0.538057 CAGCAGTGGCCTTCCTGAAA 60.538 55.000 18.14 0.00 42.56 2.69
1840 5220 2.366469 ACCACAAGAGGTCTCGCAT 58.634 52.632 0.00 0.00 37.28 4.73
1866 5246 1.134280 GGCCAGCAGAAGAATCAGCTA 60.134 52.381 0.00 0.00 45.55 3.32
2139 5615 1.895798 TCCTACAGCTGTGACTTCTGG 59.104 52.381 29.57 17.24 32.42 3.86
2216 5692 4.137543 CCATATCTTGTCCTTGGTTAGGC 58.862 47.826 0.00 0.00 44.37 3.93
2399 5930 1.771854 TGGAGTTAACAGTGGCCTTGA 59.228 47.619 13.75 0.00 0.00 3.02
2431 5962 0.959372 AACAGTGATCCTGCTGCAGC 60.959 55.000 31.89 31.89 45.68 5.25
2480 6011 1.734477 CTCAGAAGGTGGTGACGCG 60.734 63.158 3.53 3.53 43.50 6.01
2630 6166 1.335496 GTAGTGGGATCTGAGCTCGTC 59.665 57.143 9.64 7.11 0.00 4.20
2631 6167 1.064946 GTGGGATCTGAGCTCGTCG 59.935 63.158 9.64 0.00 0.00 5.12
2711 6248 3.565482 ACTTGTTTCGTCAAGCACATCAT 59.435 39.130 14.00 0.00 45.86 2.45
2712 6249 4.036734 ACTTGTTTCGTCAAGCACATCATT 59.963 37.500 14.00 0.00 45.86 2.57
2713 6250 5.238432 ACTTGTTTCGTCAAGCACATCATTA 59.762 36.000 14.00 0.00 45.86 1.90
2740 6281 3.153919 GTGGTATTTTGGTGAGCTTGGA 58.846 45.455 0.00 0.00 0.00 3.53
2808 6360 2.644676 GGAGTTAATCCTGGCTCCAAC 58.355 52.381 11.17 3.22 45.64 3.77
3077 6657 6.359883 GCTCCGTTTTATTTTTGTGAAGACTC 59.640 38.462 0.00 0.00 0.00 3.36
3081 6661 7.097168 CCGTTTTATTTTTGTGAAGACTCGAAC 60.097 37.037 0.00 0.00 0.00 3.95
3082 6662 7.427030 CGTTTTATTTTTGTGAAGACTCGAACA 59.573 33.333 0.00 0.00 0.00 3.18
3095 6675 9.273016 TGAAGACTCGAACATTCTTTTAGAATT 57.727 29.630 0.00 0.00 41.90 2.17
3242 6827 5.659440 TTTTAAAGGGCAGATTGACATCC 57.341 39.130 0.00 0.00 0.00 3.51
3243 6828 2.905415 AAAGGGCAGATTGACATCCA 57.095 45.000 0.00 0.00 0.00 3.41
3244 6829 3.393426 AAAGGGCAGATTGACATCCAT 57.607 42.857 0.00 0.00 0.00 3.41
3245 6830 4.524802 AAAGGGCAGATTGACATCCATA 57.475 40.909 0.00 0.00 0.00 2.74
3246 6831 4.736611 AAGGGCAGATTGACATCCATAT 57.263 40.909 0.00 0.00 0.00 1.78
3247 6832 5.848286 AAGGGCAGATTGACATCCATATA 57.152 39.130 0.00 0.00 0.00 0.86
3248 6833 5.171339 AGGGCAGATTGACATCCATATAC 57.829 43.478 0.00 0.00 0.00 1.47
3249 6834 4.848660 AGGGCAGATTGACATCCATATACT 59.151 41.667 0.00 0.00 0.00 2.12
3250 6835 4.940046 GGGCAGATTGACATCCATATACTG 59.060 45.833 0.00 0.00 0.00 2.74
3251 6836 5.513788 GGGCAGATTGACATCCATATACTGT 60.514 44.000 0.00 0.00 0.00 3.55
3252 6837 6.295859 GGGCAGATTGACATCCATATACTGTA 60.296 42.308 0.00 0.00 0.00 2.74
3253 6838 6.815641 GGCAGATTGACATCCATATACTGTAG 59.184 42.308 0.00 0.00 0.00 2.74
3254 6839 6.815641 GCAGATTGACATCCATATACTGTAGG 59.184 42.308 0.00 0.00 0.00 3.18
3255 6840 7.326454 CAGATTGACATCCATATACTGTAGGG 58.674 42.308 0.00 0.00 0.00 3.53
3256 6841 6.441924 AGATTGACATCCATATACTGTAGGGG 59.558 42.308 0.00 0.00 0.00 4.79
3257 6842 3.838317 TGACATCCATATACTGTAGGGGC 59.162 47.826 0.00 0.00 0.00 5.80
3258 6843 4.097418 GACATCCATATACTGTAGGGGCT 58.903 47.826 0.00 0.00 0.00 5.19
3259 6844 3.840666 ACATCCATATACTGTAGGGGCTG 59.159 47.826 0.00 0.04 0.00 4.85
3260 6845 3.915346 TCCATATACTGTAGGGGCTGA 57.085 47.619 0.00 0.00 0.00 4.26
3261 6846 3.507411 TCCATATACTGTAGGGGCTGAC 58.493 50.000 0.00 0.00 0.00 3.51
3262 6847 2.231478 CCATATACTGTAGGGGCTGACG 59.769 54.545 0.00 0.00 0.00 4.35
3263 6848 1.991121 TATACTGTAGGGGCTGACGG 58.009 55.000 0.00 0.00 0.00 4.79
3264 6849 0.032416 ATACTGTAGGGGCTGACGGT 60.032 55.000 0.00 4.37 38.67 4.83
3265 6850 0.625316 TACTGTAGGGGCTGACGGTA 59.375 55.000 0.00 2.80 36.56 4.02
3266 6851 0.969409 ACTGTAGGGGCTGACGGTAC 60.969 60.000 0.00 0.00 33.35 3.34
3267 6852 0.683504 CTGTAGGGGCTGACGGTACT 60.684 60.000 0.00 0.00 0.00 2.73
3268 6853 0.968901 TGTAGGGGCTGACGGTACTG 60.969 60.000 0.00 0.00 0.00 2.74
3269 6854 2.056223 TAGGGGCTGACGGTACTGC 61.056 63.158 0.23 0.00 0.00 4.40
3273 6858 2.657237 GCTGACGGTACTGCCAGT 59.343 61.111 17.97 1.54 36.97 4.00
3274 6859 1.738099 GCTGACGGTACTGCCAGTG 60.738 63.158 17.97 0.00 36.97 3.66
3275 6860 1.738099 CTGACGGTACTGCCAGTGC 60.738 63.158 7.83 5.90 36.97 4.40
3276 6861 2.434359 GACGGTACTGCCAGTGCC 60.434 66.667 20.76 20.76 45.96 5.01
3280 6865 2.742372 GTACTGCCAGTGCCACCG 60.742 66.667 7.83 0.00 36.33 4.94
3281 6866 4.697756 TACTGCCAGTGCCACCGC 62.698 66.667 7.83 0.00 36.33 5.68
3296 6881 3.760035 CGCGCCTAGTGGACTGGT 61.760 66.667 0.00 0.00 34.57 4.00
3297 6882 2.412323 CGCGCCTAGTGGACTGGTA 61.412 63.158 0.00 0.00 34.57 3.25
3298 6883 1.735376 CGCGCCTAGTGGACTGGTAT 61.735 60.000 0.00 0.00 34.57 2.73
3299 6884 0.249489 GCGCCTAGTGGACTGGTATG 60.249 60.000 0.00 0.00 34.57 2.39
3300 6885 1.112113 CGCCTAGTGGACTGGTATGT 58.888 55.000 0.00 0.00 34.57 2.29
3301 6886 2.304092 CGCCTAGTGGACTGGTATGTA 58.696 52.381 0.00 0.00 34.57 2.29
3302 6887 2.293677 CGCCTAGTGGACTGGTATGTAG 59.706 54.545 0.00 0.00 34.57 2.74
3303 6888 3.563223 GCCTAGTGGACTGGTATGTAGA 58.437 50.000 0.00 0.00 34.57 2.59
3304 6889 3.570550 GCCTAGTGGACTGGTATGTAGAG 59.429 52.174 0.00 0.00 34.57 2.43
3305 6890 3.570550 CCTAGTGGACTGGTATGTAGAGC 59.429 52.174 0.00 0.00 34.57 4.09
3306 6891 2.389715 AGTGGACTGGTATGTAGAGCC 58.610 52.381 0.00 0.00 0.00 4.70
3307 6892 1.067212 GTGGACTGGTATGTAGAGCCG 59.933 57.143 0.00 0.00 0.00 5.52
3308 6893 0.032267 GGACTGGTATGTAGAGCCGC 59.968 60.000 0.00 0.00 0.00 6.53
3309 6894 1.033574 GACTGGTATGTAGAGCCGCT 58.966 55.000 0.00 0.00 0.00 5.52
3310 6895 1.001158 GACTGGTATGTAGAGCCGCTC 60.001 57.143 12.80 12.80 0.00 5.03
3311 6896 0.315568 CTGGTATGTAGAGCCGCTCC 59.684 60.000 16.99 3.25 0.00 4.70
3312 6897 1.113517 TGGTATGTAGAGCCGCTCCC 61.114 60.000 16.99 10.11 0.00 4.30
3313 6898 1.286260 GTATGTAGAGCCGCTCCCG 59.714 63.158 16.99 0.00 0.00 5.14
3314 6899 2.561956 TATGTAGAGCCGCTCCCGC 61.562 63.158 16.99 7.97 0.00 6.13
3315 6900 2.978298 TATGTAGAGCCGCTCCCGCT 62.978 60.000 16.99 0.80 0.00 5.52
3316 6901 4.273257 GTAGAGCCGCTCCCGCTC 62.273 72.222 16.99 1.56 37.66 5.03
3331 6916 4.079850 CTCCTGCAGTGGCGAGCT 62.080 66.667 13.81 0.00 45.35 4.09
3332 6917 4.383861 TCCTGCAGTGGCGAGCTG 62.384 66.667 13.81 0.00 45.35 4.24
3342 6927 3.034923 GCGAGCTGCATCTAGCCG 61.035 66.667 11.10 6.75 44.76 5.52
3343 6928 2.355599 CGAGCTGCATCTAGCCGG 60.356 66.667 1.02 0.00 44.76 6.13
3344 6929 2.664518 GAGCTGCATCTAGCCGGC 60.665 66.667 21.89 21.89 44.76 6.13
3345 6930 4.598894 AGCTGCATCTAGCCGGCG 62.599 66.667 23.20 8.11 44.76 6.46
3362 6947 4.516195 GGCGACGGAGGAGGAAGC 62.516 72.222 0.00 0.00 0.00 3.86
3363 6948 4.856607 GCGACGGAGGAGGAAGCG 62.857 72.222 0.00 0.00 0.00 4.68
3364 6949 3.441290 CGACGGAGGAGGAAGCGT 61.441 66.667 0.00 0.00 0.00 5.07
3365 6950 2.182030 GACGGAGGAGGAAGCGTG 59.818 66.667 0.00 0.00 0.00 5.34
3366 6951 3.991536 GACGGAGGAGGAAGCGTGC 62.992 68.421 0.00 0.00 0.00 5.34
3368 6953 4.821589 GGAGGAGGAAGCGTGCGG 62.822 72.222 0.00 0.00 0.00 5.69
3369 6954 4.821589 GAGGAGGAAGCGTGCGGG 62.822 72.222 0.00 0.00 0.00 6.13
3371 6956 4.388499 GGAGGAAGCGTGCGGGAA 62.388 66.667 0.00 0.00 0.00 3.97
3372 6957 2.815647 GAGGAAGCGTGCGGGAAG 60.816 66.667 0.00 0.00 0.00 3.46
3373 6958 3.296709 GAGGAAGCGTGCGGGAAGA 62.297 63.158 0.00 0.00 0.00 2.87
3374 6959 2.815647 GGAAGCGTGCGGGAAGAG 60.816 66.667 0.00 0.00 0.00 2.85
3375 6960 3.491652 GAAGCGTGCGGGAAGAGC 61.492 66.667 0.00 0.00 0.00 4.09
3376 6961 3.941657 GAAGCGTGCGGGAAGAGCT 62.942 63.158 0.00 0.00 40.20 4.09
3377 6962 3.941657 AAGCGTGCGGGAAGAGCTC 62.942 63.158 5.27 5.27 37.15 4.09
3399 6984 4.394712 CGGCGCTGAACCTTCCCT 62.395 66.667 11.90 0.00 0.00 4.20
3400 6985 2.034221 GGCGCTGAACCTTCCCTT 59.966 61.111 7.64 0.00 0.00 3.95
3401 6986 2.041115 GGCGCTGAACCTTCCCTTC 61.041 63.158 7.64 0.00 0.00 3.46
3402 6987 2.041115 GCGCTGAACCTTCCCTTCC 61.041 63.158 0.00 0.00 0.00 3.46
3403 6988 1.377333 CGCTGAACCTTCCCTTCCC 60.377 63.158 0.00 0.00 0.00 3.97
3404 6989 1.767692 GCTGAACCTTCCCTTCCCA 59.232 57.895 0.00 0.00 0.00 4.37
3405 6990 0.332972 GCTGAACCTTCCCTTCCCAT 59.667 55.000 0.00 0.00 0.00 4.00
3406 6991 1.272704 GCTGAACCTTCCCTTCCCATT 60.273 52.381 0.00 0.00 0.00 3.16
3407 6992 2.728007 CTGAACCTTCCCTTCCCATTC 58.272 52.381 0.00 0.00 0.00 2.67
3408 6993 1.357761 TGAACCTTCCCTTCCCATTCC 59.642 52.381 0.00 0.00 0.00 3.01
3409 6994 0.710588 AACCTTCCCTTCCCATTCCC 59.289 55.000 0.00 0.00 0.00 3.97
3410 6995 1.227383 CCTTCCCTTCCCATTCCCG 59.773 63.158 0.00 0.00 0.00 5.14
3411 6996 1.571773 CCTTCCCTTCCCATTCCCGT 61.572 60.000 0.00 0.00 0.00 5.28
3412 6997 0.331616 CTTCCCTTCCCATTCCCGTT 59.668 55.000 0.00 0.00 0.00 4.44
3413 6998 0.039035 TTCCCTTCCCATTCCCGTTG 59.961 55.000 0.00 0.00 0.00 4.10
3414 6999 0.842905 TCCCTTCCCATTCCCGTTGA 60.843 55.000 0.00 0.00 0.00 3.18
3415 7000 0.039035 CCCTTCCCATTCCCGTTGAA 59.961 55.000 0.00 0.00 37.38 2.69
3416 7001 1.463674 CCTTCCCATTCCCGTTGAAG 58.536 55.000 0.00 0.00 36.14 3.02
3417 7002 1.004277 CCTTCCCATTCCCGTTGAAGA 59.996 52.381 0.00 0.00 36.14 2.87
3418 7003 2.554344 CCTTCCCATTCCCGTTGAAGAA 60.554 50.000 0.00 0.00 36.14 2.52
3419 7004 2.489938 TCCCATTCCCGTTGAAGAAG 57.510 50.000 0.00 0.00 36.14 2.85
3420 7005 0.811281 CCCATTCCCGTTGAAGAAGC 59.189 55.000 0.00 0.00 36.14 3.86
3421 7006 0.447801 CCATTCCCGTTGAAGAAGCG 59.552 55.000 0.00 0.00 36.14 4.68
3422 7007 0.179189 CATTCCCGTTGAAGAAGCGC 60.179 55.000 0.00 0.00 36.14 5.92
3423 7008 0.605319 ATTCCCGTTGAAGAAGCGCA 60.605 50.000 11.47 0.00 36.14 6.09
3424 7009 0.605319 TTCCCGTTGAAGAAGCGCAT 60.605 50.000 11.47 0.00 0.00 4.73
3425 7010 1.135315 CCCGTTGAAGAAGCGCATG 59.865 57.895 11.47 0.00 0.00 4.06
3426 7011 1.512734 CCGTTGAAGAAGCGCATGC 60.513 57.895 11.47 7.91 43.24 4.06
3427 7012 1.512734 CGTTGAAGAAGCGCATGCC 60.513 57.895 13.15 4.99 44.31 4.40
3428 7013 1.878775 GTTGAAGAAGCGCATGCCT 59.121 52.632 13.15 7.52 44.31 4.75
3429 7014 0.179179 GTTGAAGAAGCGCATGCCTC 60.179 55.000 13.15 6.54 44.31 4.70
3430 7015 1.638388 TTGAAGAAGCGCATGCCTCG 61.638 55.000 13.15 0.00 44.31 4.63
3444 7029 4.345337 CTCGCTAGGATTTCGGGC 57.655 61.111 0.00 0.00 0.00 6.13
3445 7030 1.742768 CTCGCTAGGATTTCGGGCT 59.257 57.895 0.00 0.00 0.00 5.19
3446 7031 0.598680 CTCGCTAGGATTTCGGGCTG 60.599 60.000 0.00 0.00 0.00 4.85
3447 7032 1.595382 CGCTAGGATTTCGGGCTGG 60.595 63.158 0.00 0.00 0.00 4.85
3448 7033 1.894282 GCTAGGATTTCGGGCTGGC 60.894 63.158 0.00 0.00 0.00 4.85
3449 7034 1.832912 CTAGGATTTCGGGCTGGCT 59.167 57.895 0.00 0.00 0.00 4.75
3450 7035 0.533755 CTAGGATTTCGGGCTGGCTG 60.534 60.000 3.21 3.21 0.00 4.85
3451 7036 0.980754 TAGGATTTCGGGCTGGCTGA 60.981 55.000 8.88 8.88 0.00 4.26
3452 7037 2.115291 GGATTTCGGGCTGGCTGAC 61.115 63.158 12.80 1.39 0.00 3.51
3453 7038 1.078143 GATTTCGGGCTGGCTGACT 60.078 57.895 12.80 3.11 0.00 3.41
3454 7039 0.178068 GATTTCGGGCTGGCTGACTA 59.822 55.000 12.80 4.44 0.00 2.59
3455 7040 0.179000 ATTTCGGGCTGGCTGACTAG 59.821 55.000 12.80 0.00 0.00 2.57
3456 7041 1.899437 TTTCGGGCTGGCTGACTAGG 61.899 60.000 12.80 0.00 0.00 3.02
3457 7042 3.854669 CGGGCTGGCTGACTAGGG 61.855 72.222 3.57 0.00 0.00 3.53
3458 7043 2.689034 GGGCTGGCTGACTAGGGT 60.689 66.667 0.00 0.00 0.00 4.34
3459 7044 2.301738 GGGCTGGCTGACTAGGGTT 61.302 63.158 0.00 0.00 0.00 4.11
3460 7045 1.685820 GGCTGGCTGACTAGGGTTT 59.314 57.895 0.00 0.00 0.00 3.27
3461 7046 0.038310 GGCTGGCTGACTAGGGTTTT 59.962 55.000 0.00 0.00 0.00 2.43
3462 7047 1.547901 GGCTGGCTGACTAGGGTTTTT 60.548 52.381 0.00 0.00 0.00 1.94
3477 7062 2.714259 TTTTTGGTCGCCAGTGAGG 58.286 52.632 0.00 0.00 41.84 3.86
3478 7063 0.821711 TTTTTGGTCGCCAGTGAGGG 60.822 55.000 0.00 0.00 38.09 4.30
3479 7064 1.701031 TTTTGGTCGCCAGTGAGGGA 61.701 55.000 0.00 0.00 38.09 4.20
3480 7065 2.111999 TTTGGTCGCCAGTGAGGGAG 62.112 60.000 0.00 0.00 38.09 4.30
3481 7066 4.459089 GGTCGCCAGTGAGGGAGC 62.459 72.222 10.47 10.47 38.09 4.70
3482 7067 3.695606 GTCGCCAGTGAGGGAGCA 61.696 66.667 0.00 0.00 38.09 4.26
3483 7068 2.922503 TCGCCAGTGAGGGAGCAA 60.923 61.111 0.00 0.00 38.09 3.91
3484 7069 2.032528 CGCCAGTGAGGGAGCAAA 59.967 61.111 0.00 0.00 38.09 3.68
3485 7070 2.037136 CGCCAGTGAGGGAGCAAAG 61.037 63.158 0.00 0.00 38.09 2.77
3486 7071 2.338785 GCCAGTGAGGGAGCAAAGC 61.339 63.158 0.00 0.00 38.09 3.51
3487 7072 2.037136 CCAGTGAGGGAGCAAAGCG 61.037 63.158 0.00 0.00 0.00 4.68
3488 7073 1.302033 CAGTGAGGGAGCAAAGCGT 60.302 57.895 0.00 0.00 0.00 5.07
3489 7074 1.302033 AGTGAGGGAGCAAAGCGTG 60.302 57.895 0.00 0.00 0.00 5.34
3490 7075 2.032528 TGAGGGAGCAAAGCGTGG 59.967 61.111 0.00 0.00 0.00 4.94
3491 7076 3.435186 GAGGGAGCAAAGCGTGGC 61.435 66.667 0.00 0.00 0.00 5.01
3494 7079 3.741476 GGAGCAAAGCGTGGCCAG 61.741 66.667 5.11 0.84 0.00 4.85
3495 7080 2.669569 GAGCAAAGCGTGGCCAGA 60.670 61.111 5.11 0.00 0.00 3.86
3496 7081 2.034687 AGCAAAGCGTGGCCAGAT 59.965 55.556 5.11 0.00 0.00 2.90
3497 7082 2.180017 GCAAAGCGTGGCCAGATG 59.820 61.111 5.11 0.00 0.00 2.90
3498 7083 2.629656 GCAAAGCGTGGCCAGATGT 61.630 57.895 5.11 0.00 0.00 3.06
3499 7084 1.210931 CAAAGCGTGGCCAGATGTG 59.789 57.895 5.11 0.18 0.00 3.21
3510 7095 2.689073 CAGATGTGGACAGGGAGGT 58.311 57.895 0.00 0.00 0.00 3.85
3511 7096 0.251354 CAGATGTGGACAGGGAGGTG 59.749 60.000 0.00 0.00 0.00 4.00
3512 7097 0.911525 AGATGTGGACAGGGAGGTGG 60.912 60.000 0.00 0.00 0.00 4.61
3513 7098 0.909610 GATGTGGACAGGGAGGTGGA 60.910 60.000 0.00 0.00 0.00 4.02
3514 7099 0.475632 ATGTGGACAGGGAGGTGGAA 60.476 55.000 0.00 0.00 0.00 3.53
3515 7100 1.127567 TGTGGACAGGGAGGTGGAAG 61.128 60.000 0.00 0.00 0.00 3.46
3516 7101 1.128188 GTGGACAGGGAGGTGGAAGT 61.128 60.000 0.00 0.00 0.00 3.01
3517 7102 1.127567 TGGACAGGGAGGTGGAAGTG 61.128 60.000 0.00 0.00 0.00 3.16
3518 7103 1.679898 GACAGGGAGGTGGAAGTGG 59.320 63.158 0.00 0.00 0.00 4.00
3519 7104 0.836400 GACAGGGAGGTGGAAGTGGA 60.836 60.000 0.00 0.00 0.00 4.02
3520 7105 0.178861 ACAGGGAGGTGGAAGTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
3521 7106 0.254178 CAGGGAGGTGGAAGTGGATG 59.746 60.000 0.00 0.00 0.00 3.51
3522 7107 0.119155 AGGGAGGTGGAAGTGGATGA 59.881 55.000 0.00 0.00 0.00 2.92
3523 7108 0.543749 GGGAGGTGGAAGTGGATGAG 59.456 60.000 0.00 0.00 0.00 2.90
3524 7109 0.543749 GGAGGTGGAAGTGGATGAGG 59.456 60.000 0.00 0.00 0.00 3.86
3525 7110 0.107459 GAGGTGGAAGTGGATGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
3526 7111 0.548682 AGGTGGAAGTGGATGAGGCT 60.549 55.000 0.00 0.00 0.00 4.58
3527 7112 1.204146 GGTGGAAGTGGATGAGGCTA 58.796 55.000 0.00 0.00 0.00 3.93
3528 7113 1.139853 GGTGGAAGTGGATGAGGCTAG 59.860 57.143 0.00 0.00 0.00 3.42
3529 7114 0.833287 TGGAAGTGGATGAGGCTAGC 59.167 55.000 6.04 6.04 0.00 3.42
3530 7115 0.107643 GGAAGTGGATGAGGCTAGCC 59.892 60.000 27.19 27.19 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 222 8.980832 AAGATAAGTAATATGGATCAGAGGGT 57.019 34.615 0.00 0.00 0.00 4.34
213 243 9.303116 ACATCCGTATCTAGACAAATCTAAGAT 57.697 33.333 0.00 0.00 36.98 2.40
214 244 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
217 247 9.516546 ACATACATCCGTATCTAGACAAATCTA 57.483 33.333 0.00 0.00 36.11 1.98
218 248 8.410673 ACATACATCCGTATCTAGACAAATCT 57.589 34.615 0.00 0.00 36.11 2.40
219 249 9.776158 CTACATACATCCGTATCTAGACAAATC 57.224 37.037 0.00 0.00 36.11 2.17
220 250 9.516546 TCTACATACATCCGTATCTAGACAAAT 57.483 33.333 0.00 0.00 36.11 2.32
221 251 8.781196 GTCTACATACATCCGTATCTAGACAAA 58.219 37.037 16.59 0.00 46.00 2.83
222 252 8.320396 GTCTACATACATCCGTATCTAGACAA 57.680 38.462 16.59 0.00 46.00 3.18
223 253 7.902387 GTCTACATACATCCGTATCTAGACA 57.098 40.000 16.59 0.00 46.00 3.41
224 254 7.411696 CGTGTCTACATACATCCGTATCTAGAC 60.412 44.444 15.47 15.47 46.42 2.59
225 255 6.589139 CGTGTCTACATACATCCGTATCTAGA 59.411 42.308 0.00 0.00 36.11 2.43
226 256 6.368243 ACGTGTCTACATACATCCGTATCTAG 59.632 42.308 0.00 0.00 36.11 2.43
227 257 6.226052 ACGTGTCTACATACATCCGTATCTA 58.774 40.000 0.00 0.00 36.11 1.98
228 258 5.061853 ACGTGTCTACATACATCCGTATCT 58.938 41.667 0.00 0.00 36.11 1.98
229 259 5.354054 ACGTGTCTACATACATCCGTATC 57.646 43.478 0.00 0.00 36.11 2.24
230 260 5.762825 AACGTGTCTACATACATCCGTAT 57.237 39.130 0.00 0.00 38.96 3.06
231 261 5.565592 AAACGTGTCTACATACATCCGTA 57.434 39.130 0.00 0.00 32.82 4.02
232 262 4.445452 AAACGTGTCTACATACATCCGT 57.555 40.909 0.00 0.00 34.68 4.69
233 263 6.020916 CACTAAAACGTGTCTACATACATCCG 60.021 42.308 0.00 0.00 0.00 4.18
234 264 6.810182 ACACTAAAACGTGTCTACATACATCC 59.190 38.462 0.00 0.00 44.32 3.51
235 265 7.807687 ACACTAAAACGTGTCTACATACATC 57.192 36.000 0.00 0.00 44.32 3.06
236 266 8.492748 CAAACACTAAAACGTGTCTACATACAT 58.507 33.333 0.00 0.00 46.71 2.29
237 267 7.705752 TCAAACACTAAAACGTGTCTACATACA 59.294 33.333 0.00 0.00 46.71 2.29
238 268 8.064447 TCAAACACTAAAACGTGTCTACATAC 57.936 34.615 0.00 0.00 46.71 2.39
239 269 8.821147 ATCAAACACTAAAACGTGTCTACATA 57.179 30.769 0.00 0.00 46.71 2.29
240 270 7.724305 ATCAAACACTAAAACGTGTCTACAT 57.276 32.000 0.00 0.00 46.71 2.29
241 271 7.705752 TGTATCAAACACTAAAACGTGTCTACA 59.294 33.333 0.00 2.24 46.71 2.74
242 272 8.064447 TGTATCAAACACTAAAACGTGTCTAC 57.936 34.615 0.00 0.08 46.71 2.59
243 273 8.821147 ATGTATCAAACACTAAAACGTGTCTA 57.179 30.769 0.00 0.00 46.71 2.59
244 274 7.095355 GGATGTATCAAACACTAAAACGTGTCT 60.095 37.037 0.00 0.00 46.71 3.41
245 275 7.013529 GGATGTATCAAACACTAAAACGTGTC 58.986 38.462 0.00 0.00 46.71 3.67
247 277 6.013085 CGGATGTATCAAACACTAAAACGTG 58.987 40.000 0.00 0.00 42.09 4.49
248 278 5.697633 ACGGATGTATCAAACACTAAAACGT 59.302 36.000 0.00 0.00 42.09 3.99
249 279 6.160664 ACGGATGTATCAAACACTAAAACG 57.839 37.500 0.00 0.00 42.09 3.60
265 295 9.005777 GTCTTAGATTTCTCTAGATACGGATGT 57.994 37.037 0.00 0.00 35.43 3.06
266 296 9.004717 TGTCTTAGATTTCTCTAGATACGGATG 57.995 37.037 0.00 0.00 35.43 3.51
267 297 9.575868 TTGTCTTAGATTTCTCTAGATACGGAT 57.424 33.333 0.00 0.00 35.43 4.18
268 298 8.975663 TTGTCTTAGATTTCTCTAGATACGGA 57.024 34.615 0.00 0.00 35.43 4.69
269 299 8.842280 ACTTGTCTTAGATTTCTCTAGATACGG 58.158 37.037 0.00 0.00 35.43 4.02
281 311 9.712305 CCGATCCATATTACTTGTCTTAGATTT 57.288 33.333 0.00 0.00 0.00 2.17
282 312 9.090103 TCCGATCCATATTACTTGTCTTAGATT 57.910 33.333 0.00 0.00 0.00 2.40
283 313 8.651589 TCCGATCCATATTACTTGTCTTAGAT 57.348 34.615 0.00 0.00 0.00 1.98
284 314 7.176865 CCTCCGATCCATATTACTTGTCTTAGA 59.823 40.741 0.00 0.00 0.00 2.10
285 315 7.316640 CCTCCGATCCATATTACTTGTCTTAG 58.683 42.308 0.00 0.00 0.00 2.18
286 316 6.210784 CCCTCCGATCCATATTACTTGTCTTA 59.789 42.308 0.00 0.00 0.00 2.10
287 317 5.012148 CCCTCCGATCCATATTACTTGTCTT 59.988 44.000 0.00 0.00 0.00 3.01
288 318 4.528596 CCCTCCGATCCATATTACTTGTCT 59.471 45.833 0.00 0.00 0.00 3.41
289 319 4.527038 TCCCTCCGATCCATATTACTTGTC 59.473 45.833 0.00 0.00 0.00 3.18
290 320 4.489737 TCCCTCCGATCCATATTACTTGT 58.510 43.478 0.00 0.00 0.00 3.16
291 321 4.528596 ACTCCCTCCGATCCATATTACTTG 59.471 45.833 0.00 0.00 0.00 3.16
292 322 4.753186 ACTCCCTCCGATCCATATTACTT 58.247 43.478 0.00 0.00 0.00 2.24
293 323 4.405756 ACTCCCTCCGATCCATATTACT 57.594 45.455 0.00 0.00 0.00 2.24
294 324 5.262804 ACTACTCCCTCCGATCCATATTAC 58.737 45.833 0.00 0.00 0.00 1.89
295 325 5.531753 ACTACTCCCTCCGATCCATATTA 57.468 43.478 0.00 0.00 0.00 0.98
296 326 4.405756 ACTACTCCCTCCGATCCATATT 57.594 45.455 0.00 0.00 0.00 1.28
297 327 5.531753 TTACTACTCCCTCCGATCCATAT 57.468 43.478 0.00 0.00 0.00 1.78
298 328 5.329191 TTTACTACTCCCTCCGATCCATA 57.671 43.478 0.00 0.00 0.00 2.74
299 329 3.897657 TTACTACTCCCTCCGATCCAT 57.102 47.619 0.00 0.00 0.00 3.41
300 330 3.675348 TTTACTACTCCCTCCGATCCA 57.325 47.619 0.00 0.00 0.00 3.41
301 331 5.163332 ACAAATTTACTACTCCCTCCGATCC 60.163 44.000 0.00 0.00 0.00 3.36
302 332 5.915175 ACAAATTTACTACTCCCTCCGATC 58.085 41.667 0.00 0.00 0.00 3.69
303 333 5.424252 TGACAAATTTACTACTCCCTCCGAT 59.576 40.000 0.00 0.00 0.00 4.18
304 334 4.773674 TGACAAATTTACTACTCCCTCCGA 59.226 41.667 0.00 0.00 0.00 4.55
305 335 5.080969 TGACAAATTTACTACTCCCTCCG 57.919 43.478 0.00 0.00 0.00 4.63
306 336 9.628500 ATTAATGACAAATTTACTACTCCCTCC 57.372 33.333 0.00 0.00 0.00 4.30
357 388 9.967245 CGAAATCTTTTCATTTAATAGACGTGA 57.033 29.630 0.00 0.00 29.39 4.35
398 432 3.643792 AGCCTCTACAAGTCACAAACTCT 59.356 43.478 0.00 0.00 37.17 3.24
438 472 4.823989 ACAGCTATATCCAAGCAATCAACC 59.176 41.667 0.00 0.00 42.62 3.77
480 514 9.308318 CTTAAGCCTCTTTAAGAGTTGAGATAC 57.692 37.037 19.16 0.82 40.72 2.24
501 535 7.595502 AGTTGACTACTGAATCGTGAACTTAAG 59.404 37.037 0.00 0.00 35.19 1.85
502 536 7.431249 AGTTGACTACTGAATCGTGAACTTAA 58.569 34.615 0.00 0.00 35.19 1.85
509 543 6.618770 CTGTAAGTTGACTACTGAATCGTG 57.381 41.667 0.00 0.00 37.12 4.35
545 579 9.498176 AAACATTCCGTAAACTTAGTATTCTGT 57.502 29.630 0.00 0.00 0.00 3.41
562 596 3.592059 TCCTTCCGTTAGAAACATTCCG 58.408 45.455 0.00 0.00 32.88 4.30
570 604 3.765511 TCCGAGAAATCCTTCCGTTAGAA 59.234 43.478 0.00 0.00 31.28 2.10
590 626 2.038387 AACCACACACAGTTGACTCC 57.962 50.000 0.00 0.00 0.00 3.85
592 628 3.066291 TGAAACCACACACAGTTGACT 57.934 42.857 0.00 0.00 0.00 3.41
597 633 7.551585 TCAATAAAAATGAAACCACACACAGT 58.448 30.769 0.00 0.00 0.00 3.55
630 666 5.745653 CGTAAGTCAAAACAAATCCATGC 57.254 39.130 0.00 0.00 0.00 4.06
686 722 5.593679 ACCTTGTGCTGATACTACGTTAT 57.406 39.130 0.00 0.00 0.00 1.89
687 723 5.395682 AACCTTGTGCTGATACTACGTTA 57.604 39.130 0.00 0.00 0.00 3.18
689 725 3.955650 AACCTTGTGCTGATACTACGT 57.044 42.857 0.00 0.00 0.00 3.57
690 726 4.929808 AGAAAACCTTGTGCTGATACTACG 59.070 41.667 0.00 0.00 0.00 3.51
691 727 8.494016 AATAGAAAACCTTGTGCTGATACTAC 57.506 34.615 0.00 0.00 0.00 2.73
693 729 9.515226 TTAAATAGAAAACCTTGTGCTGATACT 57.485 29.630 0.00 0.00 0.00 2.12
806 842 9.899661 TGGTTATGTATTTGCTAACTGAGTATT 57.100 29.630 0.00 0.00 0.00 1.89
856 895 3.030291 ACCATGTCAAAAACAGCAAGGA 58.970 40.909 0.00 0.00 42.37 3.36
861 900 7.538678 CACTAGATAAACCATGTCAAAAACAGC 59.461 37.037 0.00 0.00 42.37 4.40
977 1017 5.957842 TGTGTGGCCTGAAATAGTAAAAG 57.042 39.130 3.32 0.00 0.00 2.27
1053 1096 2.723273 TGAACAGTCTCCTCATCGCTA 58.277 47.619 0.00 0.00 0.00 4.26
1228 1274 3.817647 GTCTGCACATCTTGACTTCCTTT 59.182 43.478 0.00 0.00 0.00 3.11
1288 1334 2.129555 AAAGCATGTCCGGGCTCAGT 62.130 55.000 7.97 0.00 40.01 3.41
1549 2001 6.957150 CAGAGTTTGCTTGATATGGATCTTC 58.043 40.000 0.00 0.00 32.79 2.87
1570 4860 7.899178 TCAAATACTAGAAATTTGTCGCAGA 57.101 32.000 22.79 9.63 42.39 4.26
1840 5220 4.399395 CTTCTGCTGGCCCGAGCA 62.399 66.667 16.33 16.33 46.87 4.26
1866 5246 4.452455 CGTTTCAGCTGAGTTGATAAAGGT 59.548 41.667 17.43 0.00 0.00 3.50
2095 5484 2.768492 GGAAATCAGGCCTGCAGCG 61.768 63.158 28.91 3.92 45.17 5.18
2139 5615 2.042831 AGCTTTGCATCGCCACCTC 61.043 57.895 4.32 0.00 0.00 3.85
2239 5715 2.507484 CATGTTGGAGAGCAAGGACAA 58.493 47.619 0.00 0.00 0.00 3.18
2399 5930 5.046014 AGGATCACTGTTAGCATCTTTCTGT 60.046 40.000 0.00 0.00 0.00 3.41
2431 5962 1.592223 GGACTGGTGGAAGTCGGAG 59.408 63.158 0.00 0.00 46.31 4.63
2480 6011 0.955919 CCTTCCCGGTCACAAGCTTC 60.956 60.000 0.00 0.00 0.00 3.86
2486 6017 0.179040 GTTTCACCTTCCCGGTCACA 60.179 55.000 0.00 0.00 44.93 3.58
2630 6166 1.817099 GCAGAGAGATGGGGCAACG 60.817 63.158 0.00 0.00 37.60 4.10
2631 6167 0.106819 ATGCAGAGAGATGGGGCAAC 60.107 55.000 0.00 0.00 38.08 4.17
2711 6248 7.179269 AGCTCACCAAAATACCACCTAATTAA 58.821 34.615 0.00 0.00 0.00 1.40
2712 6249 6.727394 AGCTCACCAAAATACCACCTAATTA 58.273 36.000 0.00 0.00 0.00 1.40
2713 6250 5.580022 AGCTCACCAAAATACCACCTAATT 58.420 37.500 0.00 0.00 0.00 1.40
2808 6360 4.141287 TGTTGGTTTGGTTACATCTCAGG 58.859 43.478 0.00 0.00 0.00 3.86
2895 6455 2.305635 TCAGCCTTCATCTACCAAAGCA 59.694 45.455 0.00 0.00 0.00 3.91
3052 6624 6.206498 AGTCTTCACAAAAATAAAACGGAGC 58.794 36.000 0.00 0.00 0.00 4.70
3063 6643 6.677781 AGAATGTTCGAGTCTTCACAAAAA 57.322 33.333 5.94 0.00 0.00 1.94
3069 6649 8.833231 ATTCTAAAAGAATGTTCGAGTCTTCA 57.167 30.769 1.44 0.00 42.90 3.02
3224 6809 2.905415 TGGATGTCAATCTGCCCTTT 57.095 45.000 0.00 0.00 32.95 3.11
3225 6810 4.736611 ATATGGATGTCAATCTGCCCTT 57.263 40.909 0.00 0.00 32.95 3.95
3227 6812 4.940046 CAGTATATGGATGTCAATCTGCCC 59.060 45.833 0.00 0.00 32.95 5.36
3228 6813 5.555017 ACAGTATATGGATGTCAATCTGCC 58.445 41.667 0.00 0.00 32.95 4.85
3230 6815 7.326454 CCCTACAGTATATGGATGTCAATCTG 58.674 42.308 0.00 0.00 32.95 2.90
3231 6816 6.441924 CCCCTACAGTATATGGATGTCAATCT 59.558 42.308 0.00 0.00 32.95 2.40
3232 6817 6.644347 CCCCTACAGTATATGGATGTCAATC 58.356 44.000 0.00 0.00 0.00 2.67
3233 6818 5.045578 GCCCCTACAGTATATGGATGTCAAT 60.046 44.000 0.00 0.00 0.00 2.57
3234 6819 4.286032 GCCCCTACAGTATATGGATGTCAA 59.714 45.833 0.00 0.00 0.00 3.18
3235 6820 3.838317 GCCCCTACAGTATATGGATGTCA 59.162 47.826 0.00 0.00 0.00 3.58
3236 6821 4.081420 CAGCCCCTACAGTATATGGATGTC 60.081 50.000 0.00 0.00 0.00 3.06
3237 6822 3.840666 CAGCCCCTACAGTATATGGATGT 59.159 47.826 0.00 0.00 0.00 3.06
3238 6823 4.081420 GTCAGCCCCTACAGTATATGGATG 60.081 50.000 3.23 3.23 0.00 3.51
3239 6824 4.097418 GTCAGCCCCTACAGTATATGGAT 58.903 47.826 0.00 0.00 0.00 3.41
3240 6825 3.507411 GTCAGCCCCTACAGTATATGGA 58.493 50.000 0.00 0.00 0.00 3.41
3241 6826 2.231478 CGTCAGCCCCTACAGTATATGG 59.769 54.545 0.00 0.00 0.00 2.74
3242 6827 2.231478 CCGTCAGCCCCTACAGTATATG 59.769 54.545 0.00 0.00 0.00 1.78
3243 6828 2.158355 ACCGTCAGCCCCTACAGTATAT 60.158 50.000 0.00 0.00 0.00 0.86
3244 6829 1.216175 ACCGTCAGCCCCTACAGTATA 59.784 52.381 0.00 0.00 0.00 1.47
3245 6830 0.032416 ACCGTCAGCCCCTACAGTAT 60.032 55.000 0.00 0.00 0.00 2.12
3246 6831 0.625316 TACCGTCAGCCCCTACAGTA 59.375 55.000 0.00 0.00 0.00 2.74
3247 6832 0.969409 GTACCGTCAGCCCCTACAGT 60.969 60.000 0.00 0.00 0.00 3.55
3248 6833 0.683504 AGTACCGTCAGCCCCTACAG 60.684 60.000 0.00 0.00 0.00 2.74
3249 6834 0.968901 CAGTACCGTCAGCCCCTACA 60.969 60.000 0.00 0.00 0.00 2.74
3250 6835 1.814527 CAGTACCGTCAGCCCCTAC 59.185 63.158 0.00 0.00 0.00 3.18
3251 6836 2.056223 GCAGTACCGTCAGCCCCTA 61.056 63.158 0.00 0.00 0.00 3.53
3252 6837 3.391382 GCAGTACCGTCAGCCCCT 61.391 66.667 0.00 0.00 0.00 4.79
3253 6838 4.468689 GGCAGTACCGTCAGCCCC 62.469 72.222 0.00 0.00 41.25 5.80
3254 6839 3.665675 CTGGCAGTACCGTCAGCCC 62.666 68.421 6.28 0.00 46.45 5.19
3256 6841 1.738099 CACTGGCAGTACCGTCAGC 60.738 63.158 21.59 0.00 43.94 4.26
3257 6842 1.738099 GCACTGGCAGTACCGTCAG 60.738 63.158 21.59 9.17 43.94 3.51
3258 6843 2.342279 GCACTGGCAGTACCGTCA 59.658 61.111 21.59 0.00 43.94 4.35
3259 6844 2.434359 GGCACTGGCAGTACCGTC 60.434 66.667 20.65 6.73 43.94 4.79
3260 6845 3.238497 TGGCACTGGCAGTACCGT 61.238 61.111 27.41 1.26 43.94 4.83
3261 6846 2.742372 GTGGCACTGGCAGTACCG 60.742 66.667 27.41 14.62 43.94 4.02
3262 6847 2.359975 GGTGGCACTGGCAGTACC 60.360 66.667 26.87 26.87 43.71 3.34
3263 6848 2.742372 CGGTGGCACTGGCAGTAC 60.742 66.667 21.59 15.28 43.71 2.73
3264 6849 4.697756 GCGGTGGCACTGGCAGTA 62.698 66.667 26.71 1.34 43.71 2.74
3276 6861 3.760035 AGTCCACTAGGCGCGGTG 61.760 66.667 8.83 16.26 33.74 4.94
3277 6862 3.760035 CAGTCCACTAGGCGCGGT 61.760 66.667 8.83 0.00 33.74 5.68
3278 6863 4.514577 CCAGTCCACTAGGCGCGG 62.515 72.222 8.83 0.00 33.74 6.46
3279 6864 1.735376 ATACCAGTCCACTAGGCGCG 61.735 60.000 0.00 0.00 33.74 6.86
3280 6865 0.249489 CATACCAGTCCACTAGGCGC 60.249 60.000 0.00 0.00 33.74 6.53
3281 6866 1.112113 ACATACCAGTCCACTAGGCG 58.888 55.000 0.00 0.00 33.74 5.52
3282 6867 3.563223 TCTACATACCAGTCCACTAGGC 58.437 50.000 0.00 0.00 33.74 3.93
3283 6868 3.570550 GCTCTACATACCAGTCCACTAGG 59.429 52.174 0.00 0.00 0.00 3.02
3284 6869 3.570550 GGCTCTACATACCAGTCCACTAG 59.429 52.174 0.00 0.00 0.00 2.57
3285 6870 3.563223 GGCTCTACATACCAGTCCACTA 58.437 50.000 0.00 0.00 0.00 2.74
3286 6871 2.389715 GGCTCTACATACCAGTCCACT 58.610 52.381 0.00 0.00 0.00 4.00
3287 6872 1.067212 CGGCTCTACATACCAGTCCAC 59.933 57.143 0.00 0.00 0.00 4.02
3288 6873 1.399714 CGGCTCTACATACCAGTCCA 58.600 55.000 0.00 0.00 0.00 4.02
3289 6874 0.032267 GCGGCTCTACATACCAGTCC 59.968 60.000 0.00 0.00 0.00 3.85
3290 6875 1.001158 GAGCGGCTCTACATACCAGTC 60.001 57.143 22.32 0.00 0.00 3.51
3291 6876 1.033574 GAGCGGCTCTACATACCAGT 58.966 55.000 22.32 0.00 0.00 4.00
3292 6877 0.315568 GGAGCGGCTCTACATACCAG 59.684 60.000 27.47 0.00 0.00 4.00
3293 6878 1.113517 GGGAGCGGCTCTACATACCA 61.114 60.000 27.47 0.00 0.00 3.25
3294 6879 1.666580 GGGAGCGGCTCTACATACC 59.333 63.158 27.47 16.06 0.00 2.73
3295 6880 1.286260 CGGGAGCGGCTCTACATAC 59.714 63.158 27.47 11.07 0.00 2.39
3296 6881 3.759544 CGGGAGCGGCTCTACATA 58.240 61.111 27.47 0.00 0.00 2.29
3314 6899 4.079850 AGCTCGCCACTGCAGGAG 62.080 66.667 19.93 15.31 37.32 3.69
3315 6900 4.383861 CAGCTCGCCACTGCAGGA 62.384 66.667 19.93 4.34 37.32 3.86
3320 6905 0.875040 CTAGATGCAGCTCGCCACTG 60.875 60.000 8.28 0.00 41.33 3.66
3321 6906 1.440893 CTAGATGCAGCTCGCCACT 59.559 57.895 8.28 7.28 41.33 4.00
3322 6907 2.243264 GCTAGATGCAGCTCGCCAC 61.243 63.158 16.95 0.00 41.33 5.01
3323 6908 2.107750 GCTAGATGCAGCTCGCCA 59.892 61.111 16.95 0.00 41.33 5.69
3324 6909 2.664518 GGCTAGATGCAGCTCGCC 60.665 66.667 28.73 28.73 45.15 5.54
3325 6910 3.034923 CGGCTAGATGCAGCTCGC 61.035 66.667 19.24 19.24 45.15 5.03
3326 6911 2.355599 CCGGCTAGATGCAGCTCG 60.356 66.667 8.28 6.10 45.15 5.03
3327 6912 2.664518 GCCGGCTAGATGCAGCTC 60.665 66.667 22.15 0.00 45.15 4.09
3328 6913 4.598894 CGCCGGCTAGATGCAGCT 62.599 66.667 26.68 10.44 45.15 4.24
3344 6929 4.194720 CTTCCTCCTCCGTCGCCG 62.195 72.222 0.00 0.00 0.00 6.46
3345 6930 4.516195 GCTTCCTCCTCCGTCGCC 62.516 72.222 0.00 0.00 0.00 5.54
3346 6931 4.856607 CGCTTCCTCCTCCGTCGC 62.857 72.222 0.00 0.00 0.00 5.19
3347 6932 3.441290 ACGCTTCCTCCTCCGTCG 61.441 66.667 0.00 0.00 0.00 5.12
3348 6933 2.182030 CACGCTTCCTCCTCCGTC 59.818 66.667 0.00 0.00 0.00 4.79
3349 6934 4.070552 GCACGCTTCCTCCTCCGT 62.071 66.667 0.00 0.00 0.00 4.69
3351 6936 4.821589 CCGCACGCTTCCTCCTCC 62.822 72.222 0.00 0.00 0.00 4.30
3352 6937 4.821589 CCCGCACGCTTCCTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
3354 6939 4.388499 TTCCCGCACGCTTCCTCC 62.388 66.667 0.00 0.00 0.00 4.30
3355 6940 2.815647 CTTCCCGCACGCTTCCTC 60.816 66.667 0.00 0.00 0.00 3.71
3356 6941 3.302347 CTCTTCCCGCACGCTTCCT 62.302 63.158 0.00 0.00 0.00 3.36
3357 6942 2.815647 CTCTTCCCGCACGCTTCC 60.816 66.667 0.00 0.00 0.00 3.46
3358 6943 3.491652 GCTCTTCCCGCACGCTTC 61.492 66.667 0.00 0.00 0.00 3.86
3359 6944 3.941657 GAGCTCTTCCCGCACGCTT 62.942 63.158 6.43 0.00 0.00 4.68
3360 6945 4.443266 GAGCTCTTCCCGCACGCT 62.443 66.667 6.43 0.00 0.00 5.07
3382 6967 3.901797 AAGGGAAGGTTCAGCGCCG 62.902 63.158 2.29 0.00 0.00 6.46
3383 6968 2.034221 AAGGGAAGGTTCAGCGCC 59.966 61.111 2.29 0.00 0.00 6.53
3384 6969 2.041115 GGAAGGGAAGGTTCAGCGC 61.041 63.158 0.00 0.00 0.00 5.92
3385 6970 1.377333 GGGAAGGGAAGGTTCAGCG 60.377 63.158 0.00 0.00 0.00 5.18
3386 6971 0.332972 ATGGGAAGGGAAGGTTCAGC 59.667 55.000 0.00 0.00 0.00 4.26
3387 6972 2.621668 GGAATGGGAAGGGAAGGTTCAG 60.622 54.545 0.00 0.00 0.00 3.02
3388 6973 1.357761 GGAATGGGAAGGGAAGGTTCA 59.642 52.381 0.00 0.00 0.00 3.18
3389 6974 1.342076 GGGAATGGGAAGGGAAGGTTC 60.342 57.143 0.00 0.00 0.00 3.62
3390 6975 0.710588 GGGAATGGGAAGGGAAGGTT 59.289 55.000 0.00 0.00 0.00 3.50
3391 6976 1.571773 CGGGAATGGGAAGGGAAGGT 61.572 60.000 0.00 0.00 0.00 3.50
3392 6977 1.227383 CGGGAATGGGAAGGGAAGG 59.773 63.158 0.00 0.00 0.00 3.46
3393 6978 0.331616 AACGGGAATGGGAAGGGAAG 59.668 55.000 0.00 0.00 0.00 3.46
3394 6979 0.039035 CAACGGGAATGGGAAGGGAA 59.961 55.000 0.00 0.00 0.00 3.97
3395 6980 0.842905 TCAACGGGAATGGGAAGGGA 60.843 55.000 0.00 0.00 0.00 4.20
3396 6981 0.039035 TTCAACGGGAATGGGAAGGG 59.961 55.000 0.00 0.00 0.00 3.95
3397 6982 1.004277 TCTTCAACGGGAATGGGAAGG 59.996 52.381 0.00 0.00 36.50 3.46
3398 6983 2.489938 TCTTCAACGGGAATGGGAAG 57.510 50.000 0.00 0.00 37.03 3.46
3399 6984 2.790433 CTTCTTCAACGGGAATGGGAA 58.210 47.619 0.00 0.00 34.32 3.97
3400 6985 1.613255 GCTTCTTCAACGGGAATGGGA 60.613 52.381 0.00 0.00 34.32 4.37
3401 6986 0.811281 GCTTCTTCAACGGGAATGGG 59.189 55.000 0.00 0.00 34.32 4.00
3402 6987 0.447801 CGCTTCTTCAACGGGAATGG 59.552 55.000 0.00 0.00 34.32 3.16
3403 6988 0.179189 GCGCTTCTTCAACGGGAATG 60.179 55.000 0.00 0.00 34.32 2.67
3404 6989 0.605319 TGCGCTTCTTCAACGGGAAT 60.605 50.000 9.73 0.00 34.32 3.01
3405 6990 0.605319 ATGCGCTTCTTCAACGGGAA 60.605 50.000 9.73 0.00 0.00 3.97
3406 6991 1.003839 ATGCGCTTCTTCAACGGGA 60.004 52.632 9.73 0.00 0.00 5.14
3407 6992 1.135315 CATGCGCTTCTTCAACGGG 59.865 57.895 9.73 0.00 0.00 5.28
3408 6993 1.512734 GCATGCGCTTCTTCAACGG 60.513 57.895 9.73 0.00 34.30 4.44
3409 6994 1.512734 GGCATGCGCTTCTTCAACG 60.513 57.895 12.44 0.00 38.60 4.10
3410 6995 0.179179 GAGGCATGCGCTTCTTCAAC 60.179 55.000 12.44 0.00 40.93 3.18
3411 6996 1.638388 CGAGGCATGCGCTTCTTCAA 61.638 55.000 12.44 0.00 41.91 2.69
3412 6997 2.102438 CGAGGCATGCGCTTCTTCA 61.102 57.895 12.44 0.00 41.91 3.02
3413 6998 2.705826 CGAGGCATGCGCTTCTTC 59.294 61.111 12.44 2.57 41.91 2.87
3420 7005 0.882042 AAATCCTAGCGAGGCATGCG 60.882 55.000 12.44 0.00 43.40 4.73
3421 7006 0.871057 GAAATCCTAGCGAGGCATGC 59.129 55.000 9.90 9.90 43.40 4.06
3422 7007 1.143305 CGAAATCCTAGCGAGGCATG 58.857 55.000 8.21 0.00 43.40 4.06
3423 7008 0.034059 CCGAAATCCTAGCGAGGCAT 59.966 55.000 8.21 0.13 43.40 4.40
3424 7009 1.441729 CCGAAATCCTAGCGAGGCA 59.558 57.895 8.21 0.00 43.40 4.75
3425 7010 1.301009 CCCGAAATCCTAGCGAGGC 60.301 63.158 8.21 0.00 43.40 4.70
3426 7011 1.301009 GCCCGAAATCCTAGCGAGG 60.301 63.158 6.52 6.52 45.35 4.63
3427 7012 0.598680 CAGCCCGAAATCCTAGCGAG 60.599 60.000 0.00 0.00 0.00 5.03
3428 7013 1.441729 CAGCCCGAAATCCTAGCGA 59.558 57.895 0.00 0.00 0.00 4.93
3429 7014 1.595382 CCAGCCCGAAATCCTAGCG 60.595 63.158 0.00 0.00 0.00 4.26
3430 7015 1.894282 GCCAGCCCGAAATCCTAGC 60.894 63.158 0.00 0.00 0.00 3.42
3431 7016 0.533755 CAGCCAGCCCGAAATCCTAG 60.534 60.000 0.00 0.00 0.00 3.02
3432 7017 0.980754 TCAGCCAGCCCGAAATCCTA 60.981 55.000 0.00 0.00 0.00 2.94
3433 7018 2.273449 CAGCCAGCCCGAAATCCT 59.727 61.111 0.00 0.00 0.00 3.24
3434 7019 2.115291 GTCAGCCAGCCCGAAATCC 61.115 63.158 0.00 0.00 0.00 3.01
3435 7020 0.178068 TAGTCAGCCAGCCCGAAATC 59.822 55.000 0.00 0.00 0.00 2.17
3436 7021 0.179000 CTAGTCAGCCAGCCCGAAAT 59.821 55.000 0.00 0.00 0.00 2.17
3437 7022 1.596934 CTAGTCAGCCAGCCCGAAA 59.403 57.895 0.00 0.00 0.00 3.46
3438 7023 2.359169 CCTAGTCAGCCAGCCCGAA 61.359 63.158 0.00 0.00 0.00 4.30
3439 7024 2.759973 CCTAGTCAGCCAGCCCGA 60.760 66.667 0.00 0.00 0.00 5.14
3440 7025 3.854669 CCCTAGTCAGCCAGCCCG 61.855 72.222 0.00 0.00 0.00 6.13
3441 7026 1.853250 AAACCCTAGTCAGCCAGCCC 61.853 60.000 0.00 0.00 0.00 5.19
3442 7027 0.038310 AAAACCCTAGTCAGCCAGCC 59.962 55.000 0.00 0.00 0.00 4.85
3443 7028 1.911057 AAAAACCCTAGTCAGCCAGC 58.089 50.000 0.00 0.00 0.00 4.85
3459 7044 0.821711 CCCTCACTGGCGACCAAAAA 60.822 55.000 0.00 0.00 30.80 1.94
3460 7045 1.228124 CCCTCACTGGCGACCAAAA 60.228 57.895 0.00 0.00 30.80 2.44
3461 7046 2.111999 CTCCCTCACTGGCGACCAAA 62.112 60.000 0.00 0.00 30.80 3.28
3462 7047 2.525629 TCCCTCACTGGCGACCAA 60.526 61.111 0.00 0.00 30.80 3.67
3463 7048 2.997315 CTCCCTCACTGGCGACCA 60.997 66.667 0.00 0.00 0.00 4.02
3464 7049 4.459089 GCTCCCTCACTGGCGACC 62.459 72.222 0.00 0.00 0.00 4.79
3465 7050 2.731691 TTTGCTCCCTCACTGGCGAC 62.732 60.000 0.00 0.00 0.00 5.19
3466 7051 2.454832 CTTTGCTCCCTCACTGGCGA 62.455 60.000 0.00 0.00 0.00 5.54
3467 7052 2.032528 TTTGCTCCCTCACTGGCG 59.967 61.111 0.00 0.00 0.00 5.69
3468 7053 2.338785 GCTTTGCTCCCTCACTGGC 61.339 63.158 0.00 0.00 0.00 4.85
3469 7054 2.037136 CGCTTTGCTCCCTCACTGG 61.037 63.158 0.00 0.00 0.00 4.00
3470 7055 1.302033 ACGCTTTGCTCCCTCACTG 60.302 57.895 0.00 0.00 0.00 3.66
3471 7056 1.302033 CACGCTTTGCTCCCTCACT 60.302 57.895 0.00 0.00 0.00 3.41
3472 7057 2.328099 CCACGCTTTGCTCCCTCAC 61.328 63.158 0.00 0.00 0.00 3.51
3473 7058 2.032528 CCACGCTTTGCTCCCTCA 59.967 61.111 0.00 0.00 0.00 3.86
3474 7059 3.435186 GCCACGCTTTGCTCCCTC 61.435 66.667 0.00 0.00 0.00 4.30
3477 7062 3.741476 CTGGCCACGCTTTGCTCC 61.741 66.667 0.00 0.00 0.00 4.70
3478 7063 2.042831 ATCTGGCCACGCTTTGCTC 61.043 57.895 0.00 0.00 0.00 4.26
3479 7064 2.034687 ATCTGGCCACGCTTTGCT 59.965 55.556 0.00 0.00 0.00 3.91
3480 7065 2.180017 CATCTGGCCACGCTTTGC 59.820 61.111 0.00 0.00 0.00 3.68
3481 7066 1.210931 CACATCTGGCCACGCTTTG 59.789 57.895 0.00 0.00 0.00 2.77
3482 7067 1.973281 CCACATCTGGCCACGCTTT 60.973 57.895 0.00 0.00 0.00 3.51
3483 7068 2.360350 CCACATCTGGCCACGCTT 60.360 61.111 0.00 0.00 0.00 4.68
3484 7069 3.321648 TCCACATCTGGCCACGCT 61.322 61.111 0.00 0.00 37.49 5.07
3485 7070 3.127533 GTCCACATCTGGCCACGC 61.128 66.667 0.00 0.00 37.49 5.34
3486 7071 1.742880 CTGTCCACATCTGGCCACG 60.743 63.158 0.00 0.00 37.49 4.94
3487 7072 1.377725 CCTGTCCACATCTGGCCAC 60.378 63.158 0.00 0.00 37.49 5.01
3488 7073 2.605607 CCCTGTCCACATCTGGCCA 61.606 63.158 4.71 4.71 37.49 5.36
3489 7074 2.262774 CTCCCTGTCCACATCTGGCC 62.263 65.000 0.00 0.00 37.49 5.36
3490 7075 1.222936 CTCCCTGTCCACATCTGGC 59.777 63.158 0.00 0.00 37.49 4.85
3491 7076 0.911525 ACCTCCCTGTCCACATCTGG 60.912 60.000 0.00 0.00 39.23 3.86
3492 7077 0.251354 CACCTCCCTGTCCACATCTG 59.749 60.000 0.00 0.00 0.00 2.90
3493 7078 0.911525 CCACCTCCCTGTCCACATCT 60.912 60.000 0.00 0.00 0.00 2.90
3494 7079 0.909610 TCCACCTCCCTGTCCACATC 60.910 60.000 0.00 0.00 0.00 3.06
3495 7080 0.475632 TTCCACCTCCCTGTCCACAT 60.476 55.000 0.00 0.00 0.00 3.21
3496 7081 1.074090 TTCCACCTCCCTGTCCACA 60.074 57.895 0.00 0.00 0.00 4.17
3497 7082 1.128188 ACTTCCACCTCCCTGTCCAC 61.128 60.000 0.00 0.00 0.00 4.02
3498 7083 1.127567 CACTTCCACCTCCCTGTCCA 61.128 60.000 0.00 0.00 0.00 4.02
3499 7084 1.679898 CACTTCCACCTCCCTGTCC 59.320 63.158 0.00 0.00 0.00 4.02
3500 7085 0.836400 TCCACTTCCACCTCCCTGTC 60.836 60.000 0.00 0.00 0.00 3.51
3501 7086 0.178861 ATCCACTTCCACCTCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
3502 7087 0.254178 CATCCACTTCCACCTCCCTG 59.746 60.000 0.00 0.00 0.00 4.45
3503 7088 0.119155 TCATCCACTTCCACCTCCCT 59.881 55.000 0.00 0.00 0.00 4.20
3504 7089 0.543749 CTCATCCACTTCCACCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
3505 7090 0.543749 CCTCATCCACTTCCACCTCC 59.456 60.000 0.00 0.00 0.00 4.30
3506 7091 0.107459 GCCTCATCCACTTCCACCTC 60.107 60.000 0.00 0.00 0.00 3.85
3507 7092 0.548682 AGCCTCATCCACTTCCACCT 60.549 55.000 0.00 0.00 0.00 4.00
3508 7093 1.139853 CTAGCCTCATCCACTTCCACC 59.860 57.143 0.00 0.00 0.00 4.61
3509 7094 1.474143 GCTAGCCTCATCCACTTCCAC 60.474 57.143 2.29 0.00 0.00 4.02
3510 7095 0.833287 GCTAGCCTCATCCACTTCCA 59.167 55.000 2.29 0.00 0.00 3.53
3511 7096 0.107643 GGCTAGCCTCATCCACTTCC 59.892 60.000 27.17 0.00 0.00 3.46
3512 7097 1.127343 AGGCTAGCCTCATCCACTTC 58.873 55.000 31.30 0.28 44.43 3.01
3513 7098 3.331252 AGGCTAGCCTCATCCACTT 57.669 52.632 31.30 5.38 44.43 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.