Multiple sequence alignment - TraesCS3D01G015600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G015600 | chr3D | 100.000 | 5921 | 0 | 0 | 1 | 5921 | 5606792 | 5600872 | 0.000000e+00 | 10935.0 |
1 | TraesCS3D01G015600 | chr3D | 86.777 | 121 | 11 | 3 | 2232 | 2350 | 5727933 | 5728050 | 4.820000e-26 | 130.0 |
2 | TraesCS3D01G015600 | chr3D | 80.357 | 168 | 32 | 1 | 3110 | 3277 | 5727935 | 5728101 | 6.230000e-25 | 126.0 |
3 | TraesCS3D01G015600 | chr3D | 89.247 | 93 | 5 | 5 | 5684 | 5771 | 391575028 | 391574936 | 1.740000e-20 | 111.0 |
4 | TraesCS3D01G015600 | chr3D | 95.652 | 69 | 3 | 0 | 5708 | 5776 | 537720906 | 537720838 | 1.740000e-20 | 111.0 |
5 | TraesCS3D01G015600 | chr3D | 100.000 | 34 | 0 | 0 | 2089 | 2122 | 460727932 | 460727899 | 4.950000e-06 | 63.9 |
6 | TraesCS3D01G015600 | chr3A | 94.554 | 1726 | 64 | 8 | 3935 | 5648 | 15787330 | 15789037 | 0.000000e+00 | 2639.0 |
7 | TraesCS3D01G015600 | chr3A | 94.746 | 1637 | 58 | 5 | 1669 | 3278 | 15785017 | 15786652 | 0.000000e+00 | 2521.0 |
8 | TraesCS3D01G015600 | chr3A | 86.104 | 770 | 57 | 23 | 870 | 1618 | 15783953 | 15784693 | 0.000000e+00 | 784.0 |
9 | TraesCS3D01G015600 | chr3A | 91.259 | 572 | 47 | 3 | 1966 | 2536 | 17259920 | 17260489 | 0.000000e+00 | 776.0 |
10 | TraesCS3D01G015600 | chr3A | 90.283 | 494 | 32 | 10 | 2788 | 3276 | 17260886 | 17261368 | 3.010000e-177 | 632.0 |
11 | TraesCS3D01G015600 | chr3A | 93.909 | 394 | 24 | 0 | 1681 | 2074 | 180050379 | 180049986 | 3.950000e-166 | 595.0 |
12 | TraesCS3D01G015600 | chr3A | 94.026 | 385 | 12 | 4 | 3357 | 3740 | 15786793 | 15787167 | 1.850000e-159 | 573.0 |
13 | TraesCS3D01G015600 | chr3A | 92.674 | 273 | 15 | 3 | 3378 | 3647 | 17261668 | 17261938 | 7.200000e-104 | 388.0 |
14 | TraesCS3D01G015600 | chr3A | 87.108 | 287 | 26 | 7 | 1327 | 1612 | 17259626 | 17259902 | 1.240000e-81 | 315.0 |
15 | TraesCS3D01G015600 | chr3A | 84.259 | 324 | 31 | 12 | 1136 | 1452 | 697163580 | 697163270 | 1.250000e-76 | 298.0 |
16 | TraesCS3D01G015600 | chr3A | 91.038 | 212 | 17 | 1 | 2529 | 2740 | 17260540 | 17260749 | 9.710000e-73 | 285.0 |
17 | TraesCS3D01G015600 | chr3A | 88.034 | 234 | 14 | 6 | 4214 | 4434 | 15820142 | 15820374 | 1.270000e-66 | 265.0 |
18 | TraesCS3D01G015600 | chr3A | 92.857 | 182 | 11 | 2 | 2533 | 2714 | 180049828 | 180049649 | 4.550000e-66 | 263.0 |
19 | TraesCS3D01G015600 | chr3A | 83.721 | 258 | 36 | 5 | 135 | 390 | 17259205 | 17259458 | 7.670000e-59 | 239.0 |
20 | TraesCS3D01G015600 | chr3A | 99.153 | 118 | 1 | 0 | 3820 | 3937 | 15787164 | 15787281 | 4.650000e-51 | 213.0 |
21 | TraesCS3D01G015600 | chr3A | 93.069 | 101 | 6 | 1 | 2436 | 2536 | 180049982 | 180049883 | 4.780000e-31 | 147.0 |
22 | TraesCS3D01G015600 | chr3A | 92.157 | 102 | 6 | 2 | 3728 | 3828 | 725517068 | 725517168 | 6.190000e-30 | 143.0 |
23 | TraesCS3D01G015600 | chr3B | 93.750 | 1520 | 74 | 15 | 4144 | 5648 | 28104621 | 28106134 | 0.000000e+00 | 2261.0 |
24 | TraesCS3D01G015600 | chr3B | 86.068 | 1493 | 97 | 39 | 1 | 1453 | 28101598 | 28103019 | 0.000000e+00 | 1502.0 |
25 | TraesCS3D01G015600 | chr3B | 95.719 | 911 | 34 | 3 | 4040 | 4946 | 12407676 | 12408585 | 0.000000e+00 | 1461.0 |
26 | TraesCS3D01G015600 | chr3B | 94.240 | 868 | 48 | 2 | 1669 | 2536 | 12405028 | 12405893 | 0.000000e+00 | 1325.0 |
27 | TraesCS3D01G015600 | chr3B | 87.703 | 740 | 48 | 9 | 2530 | 3235 | 12405945 | 12406675 | 0.000000e+00 | 822.0 |
28 | TraesCS3D01G015600 | chr3B | 87.165 | 709 | 58 | 13 | 4528 | 5235 | 12419849 | 12420525 | 0.000000e+00 | 774.0 |
29 | TraesCS3D01G015600 | chr3B | 88.744 | 613 | 59 | 5 | 4528 | 5139 | 28108388 | 28108991 | 0.000000e+00 | 741.0 |
30 | TraesCS3D01G015600 | chr3B | 84.921 | 756 | 45 | 22 | 879 | 1618 | 12404004 | 12404706 | 0.000000e+00 | 701.0 |
31 | TraesCS3D01G015600 | chr3B | 90.590 | 542 | 27 | 12 | 4598 | 5139 | 12451390 | 12451907 | 0.000000e+00 | 697.0 |
32 | TraesCS3D01G015600 | chr3B | 89.687 | 543 | 31 | 12 | 4597 | 5139 | 28130251 | 28130768 | 0.000000e+00 | 669.0 |
33 | TraesCS3D01G015600 | chr3B | 92.788 | 416 | 16 | 4 | 5307 | 5710 | 12408820 | 12409233 | 1.840000e-164 | 590.0 |
34 | TraesCS3D01G015600 | chr3B | 96.296 | 351 | 10 | 2 | 5298 | 5648 | 12417204 | 12417551 | 1.850000e-159 | 573.0 |
35 | TraesCS3D01G015600 | chr3B | 92.765 | 387 | 15 | 4 | 3357 | 3740 | 12406953 | 12407329 | 1.120000e-151 | 547.0 |
36 | TraesCS3D01G015600 | chr3B | 95.161 | 310 | 10 | 2 | 4981 | 5285 | 12482253 | 12482562 | 8.920000e-133 | 484.0 |
37 | TraesCS3D01G015600 | chr3B | 87.925 | 265 | 20 | 1 | 3843 | 4095 | 28104345 | 28104609 | 9.640000e-78 | 302.0 |
38 | TraesCS3D01G015600 | chr3B | 91.244 | 217 | 11 | 2 | 3820 | 4035 | 12407326 | 12407535 | 7.510000e-74 | 289.0 |
39 | TraesCS3D01G015600 | chr3B | 90.222 | 225 | 10 | 3 | 1 | 213 | 28093508 | 28093732 | 3.490000e-72 | 283.0 |
40 | TraesCS3D01G015600 | chr3B | 90.222 | 225 | 10 | 3 | 1 | 213 | 28098304 | 28098528 | 3.490000e-72 | 283.0 |
41 | TraesCS3D01G015600 | chr3B | 86.905 | 252 | 24 | 6 | 3471 | 3713 | 28104081 | 28104332 | 2.100000e-69 | 274.0 |
42 | TraesCS3D01G015600 | chr3B | 84.064 | 251 | 23 | 9 | 1669 | 1918 | 28103256 | 28103490 | 5.970000e-55 | 226.0 |
43 | TraesCS3D01G015600 | chr3B | 93.985 | 133 | 6 | 2 | 5099 | 5231 | 12408668 | 12408798 | 3.620000e-47 | 200.0 |
44 | TraesCS3D01G015600 | chr3B | 95.455 | 110 | 5 | 0 | 1118 | 1227 | 28190205 | 28190314 | 6.100000e-40 | 176.0 |
45 | TraesCS3D01G015600 | chr3B | 93.220 | 118 | 3 | 2 | 5809 | 5921 | 12409231 | 12409348 | 1.020000e-37 | 169.0 |
46 | TraesCS3D01G015600 | chr3B | 97.753 | 89 | 2 | 0 | 4980 | 5068 | 12408586 | 12408674 | 2.860000e-33 | 154.0 |
47 | TraesCS3D01G015600 | chr3B | 85.612 | 139 | 15 | 4 | 3139 | 3273 | 28103774 | 28103911 | 2.220000e-29 | 141.0 |
48 | TraesCS3D01G015600 | chr3B | 92.391 | 92 | 6 | 1 | 3194 | 3285 | 97360963 | 97360873 | 4.820000e-26 | 130.0 |
49 | TraesCS3D01G015600 | chr3B | 94.805 | 77 | 3 | 1 | 3820 | 3896 | 789726268 | 789726343 | 1.040000e-22 | 119.0 |
50 | TraesCS3D01G015600 | chr3B | 80.769 | 156 | 19 | 9 | 2249 | 2395 | 27865136 | 27864983 | 1.740000e-20 | 111.0 |
51 | TraesCS3D01G015600 | chr3B | 89.888 | 89 | 3 | 4 | 5689 | 5771 | 726607567 | 726607479 | 6.270000e-20 | 110.0 |
52 | TraesCS3D01G015600 | chr3B | 82.171 | 129 | 17 | 4 | 3110 | 3233 | 28103253 | 28103380 | 8.120000e-19 | 106.0 |
53 | TraesCS3D01G015600 | chr3B | 92.105 | 76 | 5 | 1 | 5701 | 5776 | 595367137 | 595367211 | 8.120000e-19 | 106.0 |
54 | TraesCS3D01G015600 | chrUn | 96.178 | 811 | 22 | 5 | 4144 | 4946 | 35885455 | 35884646 | 0.000000e+00 | 1317.0 |
55 | TraesCS3D01G015600 | chrUn | 93.710 | 620 | 24 | 9 | 5099 | 5710 | 35884563 | 35883951 | 0.000000e+00 | 915.0 |
56 | TraesCS3D01G015600 | chrUn | 92.308 | 455 | 33 | 2 | 1 | 454 | 35454719 | 35455172 | 0.000000e+00 | 645.0 |
57 | TraesCS3D01G015600 | chrUn | 88.588 | 517 | 26 | 7 | 892 | 1401 | 35888102 | 35887612 | 1.100000e-166 | 597.0 |
58 | TraesCS3D01G015600 | chrUn | 91.638 | 287 | 20 | 2 | 4514 | 4797 | 35739156 | 35738871 | 1.550000e-105 | 394.0 |
59 | TraesCS3D01G015600 | chrUn | 90.222 | 225 | 10 | 3 | 1 | 213 | 344946511 | 344946735 | 3.490000e-72 | 283.0 |
60 | TraesCS3D01G015600 | chrUn | 94.017 | 117 | 3 | 2 | 5809 | 5921 | 35883953 | 35883837 | 2.190000e-39 | 174.0 |
61 | TraesCS3D01G015600 | chrUn | 98.876 | 89 | 1 | 0 | 4980 | 5068 | 35884645 | 35884557 | 6.140000e-35 | 159.0 |
62 | TraesCS3D01G015600 | chrUn | 91.228 | 114 | 9 | 1 | 3935 | 4048 | 35885799 | 35885687 | 2.860000e-33 | 154.0 |
63 | TraesCS3D01G015600 | chrUn | 88.889 | 90 | 8 | 2 | 3139 | 3227 | 35886608 | 35886520 | 6.270000e-20 | 110.0 |
64 | TraesCS3D01G015600 | chr5B | 92.269 | 401 | 22 | 8 | 2884 | 3276 | 49971931 | 49972330 | 1.440000e-155 | 560.0 |
65 | TraesCS3D01G015600 | chr5B | 87.555 | 458 | 46 | 6 | 1957 | 2410 | 61801129 | 61800679 | 2.450000e-143 | 520.0 |
66 | TraesCS3D01G015600 | chr5B | 91.451 | 386 | 17 | 9 | 3360 | 3740 | 124879199 | 124878825 | 3.160000e-142 | 516.0 |
67 | TraesCS3D01G015600 | chr5B | 91.003 | 389 | 19 | 9 | 3357 | 3740 | 705370391 | 705370768 | 1.470000e-140 | 510.0 |
68 | TraesCS3D01G015600 | chr5B | 90.966 | 321 | 13 | 7 | 3425 | 3740 | 427835597 | 427835288 | 9.180000e-113 | 418.0 |
69 | TraesCS3D01G015600 | chr5B | 90.190 | 316 | 20 | 7 | 3357 | 3670 | 145510340 | 145510646 | 9.240000e-108 | 401.0 |
70 | TraesCS3D01G015600 | chr5B | 90.459 | 283 | 26 | 1 | 2129 | 2410 | 62305919 | 62306201 | 7.250000e-99 | 372.0 |
71 | TraesCS3D01G015600 | chr5B | 81.591 | 440 | 46 | 18 | 1170 | 1595 | 711381881 | 711382299 | 1.230000e-86 | 331.0 |
72 | TraesCS3D01G015600 | chr5B | 100.000 | 34 | 0 | 0 | 5778 | 5811 | 133053472 | 133053439 | 4.950000e-06 | 63.9 |
73 | TraesCS3D01G015600 | chr5B | 100.000 | 34 | 0 | 0 | 5778 | 5811 | 339024720 | 339024753 | 4.950000e-06 | 63.9 |
74 | TraesCS3D01G015600 | chr2B | 91.710 | 386 | 22 | 6 | 3357 | 3740 | 76529203 | 76529580 | 1.460000e-145 | 527.0 |
75 | TraesCS3D01G015600 | chr2B | 96.875 | 96 | 2 | 1 | 3730 | 3824 | 799071224 | 799071319 | 6.140000e-35 | 159.0 |
76 | TraesCS3D01G015600 | chr2B | 91.489 | 94 | 7 | 1 | 3183 | 3276 | 429839269 | 429839361 | 1.730000e-25 | 128.0 |
77 | TraesCS3D01G015600 | chr2B | 91.304 | 46 | 4 | 0 | 5781 | 5826 | 24264145 | 24264100 | 4.950000e-06 | 63.9 |
78 | TraesCS3D01G015600 | chr7B | 91.304 | 391 | 23 | 7 | 3352 | 3740 | 116770482 | 116770863 | 1.890000e-144 | 523.0 |
79 | TraesCS3D01G015600 | chr7B | 92.391 | 92 | 6 | 1 | 3185 | 3276 | 76371683 | 76371773 | 4.820000e-26 | 130.0 |
80 | TraesCS3D01G015600 | chr7B | 86.486 | 111 | 5 | 9 | 5708 | 5810 | 191178899 | 191179007 | 4.850000e-21 | 113.0 |
81 | TraesCS3D01G015600 | chr7B | 100.000 | 43 | 0 | 0 | 1149 | 1191 | 472332608 | 472332650 | 4.920000e-11 | 80.5 |
82 | TraesCS3D01G015600 | chr7B | 100.000 | 43 | 0 | 0 | 1149 | 1191 | 472398089 | 472398131 | 4.920000e-11 | 80.5 |
83 | TraesCS3D01G015600 | chr7B | 100.000 | 31 | 0 | 0 | 2092 | 2122 | 544627571 | 544627541 | 2.300000e-04 | 58.4 |
84 | TraesCS3D01G015600 | chr1A | 91.645 | 383 | 22 | 6 | 3360 | 3740 | 50565909 | 50565535 | 6.800000e-144 | 521.0 |
85 | TraesCS3D01G015600 | chr1A | 90.537 | 391 | 26 | 7 | 3352 | 3740 | 370269883 | 370270264 | 1.900000e-139 | 507.0 |
86 | TraesCS3D01G015600 | chr1A | 83.032 | 442 | 40 | 19 | 1168 | 1595 | 26547239 | 26546819 | 9.370000e-98 | 368.0 |
87 | TraesCS3D01G015600 | chr1A | 94.340 | 159 | 7 | 2 | 2884 | 3041 | 17536340 | 17536497 | 5.930000e-60 | 243.0 |
88 | TraesCS3D01G015600 | chr1A | 92.857 | 154 | 5 | 6 | 3592 | 3740 | 41859768 | 41859616 | 9.990000e-53 | 219.0 |
89 | TraesCS3D01G015600 | chr1A | 95.556 | 90 | 4 | 0 | 3737 | 3826 | 14531210 | 14531121 | 1.720000e-30 | 145.0 |
90 | TraesCS3D01G015600 | chr1A | 97.143 | 70 | 2 | 0 | 3820 | 3889 | 17537089 | 17537158 | 1.040000e-22 | 119.0 |
91 | TraesCS3D01G015600 | chr1A | 94.737 | 76 | 4 | 0 | 3820 | 3895 | 41859619 | 41859544 | 1.040000e-22 | 119.0 |
92 | TraesCS3D01G015600 | chr1A | 94.737 | 76 | 4 | 0 | 3820 | 3895 | 50565538 | 50565463 | 1.040000e-22 | 119.0 |
93 | TraesCS3D01G015600 | chr1A | 97.143 | 70 | 2 | 0 | 3820 | 3889 | 370270261 | 370270330 | 1.040000e-22 | 119.0 |
94 | TraesCS3D01G015600 | chr1A | 94.737 | 76 | 4 | 0 | 3820 | 3895 | 422003780 | 422003705 | 1.040000e-22 | 119.0 |
95 | TraesCS3D01G015600 | chr4B | 91.003 | 389 | 19 | 9 | 3357 | 3740 | 338888637 | 338889014 | 1.470000e-140 | 510.0 |
96 | TraesCS3D01G015600 | chr4B | 94.340 | 159 | 7 | 2 | 2884 | 3041 | 62263303 | 62263146 | 5.930000e-60 | 243.0 |
97 | TraesCS3D01G015600 | chr4B | 94.340 | 159 | 7 | 2 | 2884 | 3041 | 424790950 | 424790793 | 5.930000e-60 | 243.0 |
98 | TraesCS3D01G015600 | chr4B | 95.775 | 71 | 3 | 0 | 5706 | 5776 | 619027002 | 619027072 | 1.350000e-21 | 115.0 |
99 | TraesCS3D01G015600 | chr6B | 92.711 | 343 | 25 | 0 | 1732 | 2074 | 272817182 | 272816840 | 4.120000e-136 | 496.0 |
100 | TraesCS3D01G015600 | chr6B | 91.209 | 182 | 14 | 2 | 2533 | 2714 | 272816682 | 272816503 | 4.580000e-61 | 246.0 |
101 | TraesCS3D01G015600 | chr6B | 93.069 | 101 | 6 | 1 | 2436 | 2536 | 272816836 | 272816737 | 4.780000e-31 | 147.0 |
102 | TraesCS3D01G015600 | chr6B | 91.262 | 103 | 7 | 2 | 3727 | 3829 | 252820849 | 252820949 | 8.000000e-29 | 139.0 |
103 | TraesCS3D01G015600 | chr6B | 81.679 | 131 | 21 | 2 | 2249 | 2378 | 694874411 | 694874283 | 8.120000e-19 | 106.0 |
104 | TraesCS3D01G015600 | chr6A | 90.735 | 313 | 19 | 6 | 3360 | 3670 | 576295527 | 576295223 | 5.520000e-110 | 409.0 |
105 | TraesCS3D01G015600 | chr6A | 94.340 | 159 | 7 | 2 | 2884 | 3041 | 327805862 | 327806019 | 5.930000e-60 | 243.0 |
106 | TraesCS3D01G015600 | chr6A | 94.340 | 159 | 7 | 2 | 2884 | 3041 | 576295906 | 576295749 | 5.930000e-60 | 243.0 |
107 | TraesCS3D01G015600 | chr6A | 93.204 | 103 | 6 | 1 | 3729 | 3830 | 593927256 | 593927358 | 3.700000e-32 | 150.0 |
108 | TraesCS3D01G015600 | chr1D | 96.739 | 92 | 3 | 0 | 3732 | 3823 | 494560273 | 494560364 | 2.860000e-33 | 154.0 |
109 | TraesCS3D01G015600 | chr1D | 97.500 | 40 | 1 | 0 | 5778 | 5817 | 238533792 | 238533753 | 1.060000e-07 | 69.4 |
110 | TraesCS3D01G015600 | chr2A | 95.652 | 92 | 4 | 0 | 3731 | 3822 | 195110211 | 195110302 | 1.330000e-31 | 148.0 |
111 | TraesCS3D01G015600 | chr2A | 95.349 | 86 | 4 | 0 | 3738 | 3823 | 384337727 | 384337812 | 2.880000e-28 | 137.0 |
112 | TraesCS3D01G015600 | chr1B | 95.652 | 92 | 4 | 0 | 3731 | 3822 | 154145340 | 154145431 | 1.330000e-31 | 148.0 |
113 | TraesCS3D01G015600 | chr1B | 92.208 | 77 | 4 | 2 | 5707 | 5783 | 510360084 | 510360010 | 2.260000e-19 | 108.0 |
114 | TraesCS3D01G015600 | chr7A | 92.157 | 102 | 6 | 2 | 2436 | 2536 | 649713949 | 649713849 | 6.190000e-30 | 143.0 |
115 | TraesCS3D01G015600 | chr7A | 93.182 | 88 | 6 | 0 | 3194 | 3281 | 597542246 | 597542159 | 4.820000e-26 | 130.0 |
116 | TraesCS3D01G015600 | chr7D | 95.714 | 70 | 3 | 0 | 5707 | 5776 | 447766701 | 447766770 | 4.850000e-21 | 113.0 |
117 | TraesCS3D01G015600 | chr7D | 89.474 | 57 | 4 | 2 | 5458 | 5514 | 43166706 | 43166652 | 2.960000e-08 | 71.3 |
118 | TraesCS3D01G015600 | chr4A | 98.438 | 64 | 1 | 0 | 5708 | 5771 | 545601280 | 545601217 | 4.850000e-21 | 113.0 |
119 | TraesCS3D01G015600 | chr4A | 100.000 | 43 | 0 | 0 | 2080 | 2122 | 551402983 | 551402941 | 4.920000e-11 | 80.5 |
120 | TraesCS3D01G015600 | chr5A | 100.000 | 43 | 0 | 0 | 2080 | 2122 | 195256252 | 195256294 | 4.920000e-11 | 80.5 |
121 | TraesCS3D01G015600 | chr5A | 100.000 | 34 | 0 | 0 | 5778 | 5811 | 338578092 | 338578125 | 4.950000e-06 | 63.9 |
122 | TraesCS3D01G015600 | chr4D | 97.674 | 43 | 1 | 0 | 2080 | 2122 | 447206300 | 447206342 | 2.290000e-09 | 75.0 |
123 | TraesCS3D01G015600 | chr5D | 100.000 | 39 | 0 | 0 | 5778 | 5816 | 44119013 | 44119051 | 8.230000e-09 | 73.1 |
124 | TraesCS3D01G015600 | chr5D | 100.000 | 34 | 0 | 0 | 5778 | 5811 | 463288600 | 463288567 | 4.950000e-06 | 63.9 |
125 | TraesCS3D01G015600 | chr2D | 100.000 | 35 | 0 | 0 | 5778 | 5812 | 624555638 | 624555672 | 1.380000e-06 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G015600 | chr3D | 5600872 | 5606792 | 5920 | True | 10935.000000 | 10935 | 100.000000 | 1 | 5921 | 1 | chr3D.!!$R1 | 5920 |
1 | TraesCS3D01G015600 | chr3A | 15783953 | 15789037 | 5084 | False | 1346.000000 | 2639 | 93.716600 | 870 | 5648 | 5 | chr3A.!!$F3 | 4778 |
2 | TraesCS3D01G015600 | chr3A | 17259205 | 17261938 | 2733 | False | 439.166667 | 776 | 89.347167 | 135 | 3647 | 6 | chr3A.!!$F4 | 3512 |
3 | TraesCS3D01G015600 | chr3A | 180049649 | 180050379 | 730 | True | 335.000000 | 595 | 93.278333 | 1681 | 2714 | 3 | chr3A.!!$R2 | 1033 |
4 | TraesCS3D01G015600 | chr3B | 12451390 | 12451907 | 517 | False | 697.000000 | 697 | 90.590000 | 4598 | 5139 | 1 | chr3B.!!$F1 | 541 |
5 | TraesCS3D01G015600 | chr3B | 12417204 | 12420525 | 3321 | False | 673.500000 | 774 | 91.730500 | 4528 | 5648 | 2 | chr3B.!!$F9 | 1120 |
6 | TraesCS3D01G015600 | chr3B | 28130251 | 28130768 | 517 | False | 669.000000 | 669 | 89.687000 | 4597 | 5139 | 1 | chr3B.!!$F4 | 542 |
7 | TraesCS3D01G015600 | chr3B | 28098304 | 28108991 | 10687 | False | 648.444444 | 2261 | 87.273444 | 1 | 5648 | 9 | chr3B.!!$F10 | 5647 |
8 | TraesCS3D01G015600 | chr3B | 12404004 | 12409348 | 5344 | False | 625.800000 | 1461 | 92.433800 | 879 | 5921 | 10 | chr3B.!!$F8 | 5042 |
9 | TraesCS3D01G015600 | chrUn | 35883837 | 35888102 | 4265 | True | 489.428571 | 1317 | 93.069429 | 892 | 5921 | 7 | chrUn.!!$R2 | 5029 |
10 | TraesCS3D01G015600 | chr6B | 272816503 | 272817182 | 679 | True | 296.333333 | 496 | 92.329667 | 1732 | 2714 | 3 | chr6B.!!$R2 | 982 |
11 | TraesCS3D01G015600 | chr6A | 576295223 | 576295906 | 683 | True | 326.000000 | 409 | 92.537500 | 2884 | 3670 | 2 | chr6A.!!$R1 | 786 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
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Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
137 | 138 | 0.037017 | TAGGGTTAAGCGGCTTTGCA | 59.963 | 50.0 | 21.72 | 0.0 | 37.31 | 4.08 | F |
294 | 3601 | 0.666577 | CGACCCTCGTTCGCTTTTCT | 60.667 | 55.0 | 0.00 | 0.0 | 34.72 | 2.52 | F |
1394 | 4788 | 0.994247 | ATGCCAGTGGAGTGGATTGA | 59.006 | 50.0 | 15.20 | 0.0 | 40.44 | 2.57 | F |
2152 | 5859 | 0.107456 | AGAGGCATAATGACAGCGGG | 59.893 | 55.0 | 0.00 | 0.0 | 0.00 | 6.13 | F |
2952 | 6944 | 0.037605 | GGGTCTTGATCGGTCGTGTT | 60.038 | 55.0 | 0.00 | 0.0 | 0.00 | 3.32 | F |
4317 | 9100 | 1.843992 | CTCTGTGTTGCAAAAGCACC | 58.156 | 50.0 | 14.11 | 0.0 | 32.62 | 5.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1499 | 5193 | 0.451783 | CCTACAAGGCGGCATTTGTC | 59.548 | 55.000 | 17.97 | 0.0 | 38.41 | 3.18 | R |
1638 | 5336 | 0.682292 | TGGTCCACTGACATTACGCA | 59.318 | 50.000 | 0.00 | 0.0 | 43.65 | 5.24 | R |
2379 | 6130 | 1.066573 | CCCTGTTCAGCTTCGAGACAT | 60.067 | 52.381 | 0.00 | 0.0 | 0.00 | 3.06 | R |
3139 | 7193 | 1.140816 | GCTTCGAGACACCAACAGTC | 58.859 | 55.000 | 0.00 | 0.0 | 36.26 | 3.51 | R |
4403 | 9186 | 0.679505 | TTTCTGCTGGTAGCTGACGT | 59.320 | 50.000 | 9.47 | 0.0 | 46.52 | 4.34 | R |
5793 | 10742 | 0.178926 | TTGTACTCCCTCCGTCCCAA | 60.179 | 55.000 | 0.00 | 0.0 | 0.00 | 4.12 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
70 | 71 | 8.716646 | ATGACACATGTATGATTAAACTTCGA | 57.283 | 30.769 | 0.00 | 0.00 | 0.00 | 3.71 |
108 | 109 | 2.904866 | TGCAACGTGAACCAGGCC | 60.905 | 61.111 | 0.00 | 0.00 | 0.00 | 5.19 |
135 | 136 | 2.396590 | TCTAGGGTTAAGCGGCTTTG | 57.603 | 50.000 | 21.72 | 0.00 | 0.00 | 2.77 |
136 | 137 | 0.733150 | CTAGGGTTAAGCGGCTTTGC | 59.267 | 55.000 | 21.72 | 13.34 | 0.00 | 3.68 |
137 | 138 | 0.037017 | TAGGGTTAAGCGGCTTTGCA | 59.963 | 50.000 | 21.72 | 0.00 | 37.31 | 4.08 |
138 | 139 | 1.080772 | GGGTTAAGCGGCTTTGCAC | 60.081 | 57.895 | 21.72 | 14.46 | 37.31 | 4.57 |
139 | 140 | 1.524008 | GGGTTAAGCGGCTTTGCACT | 61.524 | 55.000 | 21.72 | 0.00 | 37.31 | 4.40 |
148 | 161 | 1.131126 | CGGCTTTGCACTAAGATGTGG | 59.869 | 52.381 | 2.23 | 0.00 | 38.31 | 4.17 |
235 | 3542 | 1.580059 | TTAGCCGGAAGAAGTGGGAT | 58.420 | 50.000 | 5.05 | 0.00 | 0.00 | 3.85 |
247 | 3554 | 4.079253 | AGAAGTGGGATTTAACGCAATGT | 58.921 | 39.130 | 0.00 | 0.00 | 34.73 | 2.71 |
294 | 3601 | 0.666577 | CGACCCTCGTTCGCTTTTCT | 60.667 | 55.000 | 0.00 | 0.00 | 34.72 | 2.52 |
321 | 3628 | 2.560981 | TGGTTCAGCTAGACGTCAATCA | 59.439 | 45.455 | 19.50 | 5.60 | 0.00 | 2.57 |
355 | 3663 | 6.590234 | AATTTGGGTAAGTCCATTTCTGTC | 57.410 | 37.500 | 0.00 | 0.00 | 36.58 | 3.51 |
372 | 3680 | 2.246874 | TCGGGAAGGGAGGAGGAGT | 61.247 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
395 | 3703 | 1.517361 | CAGAGCACCTACATCGCCA | 59.483 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
454 | 3776 | 5.514274 | CAACAACATTGGTGTTCTTAGGT | 57.486 | 39.130 | 17.03 | 0.00 | 45.14 | 3.08 |
459 | 3781 | 1.145571 | TTGGTGTTCTTAGGTGGGCT | 58.854 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
521 | 3843 | 1.800586 | GGTTCGTCGGTTTAAAGGGAC | 59.199 | 52.381 | 8.01 | 8.01 | 0.00 | 4.46 |
523 | 3845 | 2.448477 | CGTCGGTTTAAAGGGACGG | 58.552 | 57.895 | 23.35 | 11.61 | 46.08 | 4.79 |
565 | 3887 | 1.810606 | CGATGGAGGATGGTCGAGGG | 61.811 | 65.000 | 0.00 | 0.00 | 36.25 | 4.30 |
594 | 3916 | 3.948719 | GGTGAGGCGGTTGTGGGA | 61.949 | 66.667 | 0.00 | 0.00 | 0.00 | 4.37 |
595 | 3917 | 2.358737 | GTGAGGCGGTTGTGGGAG | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
596 | 3918 | 2.847234 | TGAGGCGGTTGTGGGAGT | 60.847 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
597 | 3919 | 2.358737 | GAGGCGGTTGTGGGAGTG | 60.359 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
598 | 3920 | 4.643387 | AGGCGGTTGTGGGAGTGC | 62.643 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
600 | 3922 | 4.947147 | GCGGTTGTGGGAGTGCCA | 62.947 | 66.667 | 0.00 | 0.00 | 35.15 | 4.92 |
601 | 3923 | 2.978010 | CGGTTGTGGGAGTGCCAC | 60.978 | 66.667 | 25.82 | 25.82 | 38.52 | 5.01 |
602 | 3924 | 2.597510 | GGTTGTGGGAGTGCCACC | 60.598 | 66.667 | 28.76 | 15.42 | 37.38 | 4.61 |
603 | 3925 | 2.978010 | GTTGTGGGAGTGCCACCG | 60.978 | 66.667 | 28.76 | 0.00 | 37.38 | 4.94 |
604 | 3926 | 3.164977 | TTGTGGGAGTGCCACCGA | 61.165 | 61.111 | 28.76 | 15.96 | 37.38 | 4.69 |
605 | 3927 | 3.469863 | TTGTGGGAGTGCCACCGAC | 62.470 | 63.158 | 28.76 | 6.71 | 37.38 | 4.79 |
606 | 3928 | 4.699522 | GTGGGAGTGCCACCGACC | 62.700 | 72.222 | 22.55 | 0.00 | 35.15 | 4.79 |
637 | 3959 | 2.046314 | GCAAGCGGTTAGGCCTGA | 60.046 | 61.111 | 17.99 | 3.42 | 34.25 | 3.86 |
648 | 3970 | 2.298335 | TAGGCCTGAGCTGGATCGGA | 62.298 | 60.000 | 17.99 | 0.00 | 39.73 | 4.55 |
653 | 3975 | 3.219928 | GAGCTGGATCGGAGGCGA | 61.220 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
672 | 3994 | 5.765182 | AGGCGATGAGAAGAAAAAGAGAAAA | 59.235 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
703 | 4025 | 6.906157 | ACCAGTTTGATGTTGAAGATGAAT | 57.094 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
707 | 4029 | 6.522165 | CAGTTTGATGTTGAAGATGAATCACG | 59.478 | 38.462 | 0.00 | 0.00 | 0.00 | 4.35 |
721 | 4043 | 1.959042 | ATCACGCTGTCCATTGGATC | 58.041 | 50.000 | 9.01 | 3.68 | 32.73 | 3.36 |
728 | 4050 | 3.548770 | GCTGTCCATTGGATCTTGATCA | 58.451 | 45.455 | 9.01 | 0.00 | 32.73 | 2.92 |
736 | 4058 | 9.323484 | GTCCATTGGATCTTGATCAAACGGATC | 62.323 | 44.444 | 20.23 | 20.23 | 42.58 | 3.36 |
745 | 4067 | 4.096732 | GATCAAACGGATCCAAAGGTTG | 57.903 | 45.455 | 13.41 | 10.89 | 45.58 | 3.77 |
757 | 4079 | 3.739401 | CAAAGGTTGGGATAAGAGGGT | 57.261 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
761 | 4083 | 1.920351 | GGTTGGGATAAGAGGGTGGAA | 59.080 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
765 | 4087 | 2.513738 | TGGGATAAGAGGGTGGAAATGG | 59.486 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
775 | 4097 | 2.024941 | GGGTGGAAATGGACTGATCCTT | 60.025 | 50.000 | 0.00 | 0.00 | 46.43 | 3.36 |
784 | 4106 | 4.524316 | TGGACTGATCCTTTGCAAAATG | 57.476 | 40.909 | 13.84 | 7.63 | 46.43 | 2.32 |
789 | 4111 | 6.652062 | GGACTGATCCTTTGCAAAATGAATTT | 59.348 | 34.615 | 13.84 | 0.00 | 42.45 | 1.82 |
820 | 4142 | 1.003118 | TGACGCCTAGCCACTCATTTT | 59.997 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
822 | 4144 | 3.267483 | GACGCCTAGCCACTCATTTTTA | 58.733 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
829 | 4151 | 7.267857 | GCCTAGCCACTCATTTTTATTTTCAT | 58.732 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
830 | 4152 | 7.765819 | GCCTAGCCACTCATTTTTATTTTCATT | 59.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
843 | 4165 | 9.781834 | TTTTTATTTTCATTACTGGCATCTACG | 57.218 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
846 | 4168 | 6.417191 | TTTTCATTACTGGCATCTACGTTC | 57.583 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
847 | 4169 | 5.339008 | TTCATTACTGGCATCTACGTTCT | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
848 | 4170 | 5.339008 | TCATTACTGGCATCTACGTTCTT | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
849 | 4171 | 6.459670 | TCATTACTGGCATCTACGTTCTTA | 57.540 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
851 | 4173 | 8.173542 | TCATTACTGGCATCTACGTTCTTATA | 57.826 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
852 | 4174 | 8.803235 | TCATTACTGGCATCTACGTTCTTATAT | 58.197 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
853 | 4175 | 9.424319 | CATTACTGGCATCTACGTTCTTATATT | 57.576 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
854 | 4176 | 8.812147 | TTACTGGCATCTACGTTCTTATATTG | 57.188 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
855 | 4177 | 6.817184 | ACTGGCATCTACGTTCTTATATTGT | 58.183 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
856 | 4178 | 6.701841 | ACTGGCATCTACGTTCTTATATTGTG | 59.298 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
857 | 4179 | 6.811954 | TGGCATCTACGTTCTTATATTGTGA | 58.188 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
858 | 4180 | 6.923508 | TGGCATCTACGTTCTTATATTGTGAG | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
859 | 4181 | 7.145985 | GGCATCTACGTTCTTATATTGTGAGA | 58.854 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
860 | 4182 | 7.327275 | GGCATCTACGTTCTTATATTGTGAGAG | 59.673 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
861 | 4183 | 7.327275 | GCATCTACGTTCTTATATTGTGAGAGG | 59.673 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
862 | 4184 | 7.273320 | TCTACGTTCTTATATTGTGAGAGGG | 57.727 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
863 | 4185 | 7.058525 | TCTACGTTCTTATATTGTGAGAGGGA | 58.941 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
864 | 4186 | 5.903810 | ACGTTCTTATATTGTGAGAGGGAC | 58.096 | 41.667 | 0.00 | 0.00 | 0.00 | 4.46 |
865 | 4187 | 4.976731 | CGTTCTTATATTGTGAGAGGGACG | 59.023 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
866 | 4188 | 5.290386 | GTTCTTATATTGTGAGAGGGACGG | 58.710 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
867 | 4189 | 4.800023 | TCTTATATTGTGAGAGGGACGGA | 58.200 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
868 | 4190 | 4.827835 | TCTTATATTGTGAGAGGGACGGAG | 59.172 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
884 | 4206 | 1.156645 | GGAGTATCTTGCAGCCAGCG | 61.157 | 60.000 | 0.00 | 0.00 | 40.52 | 5.18 |
952 | 4279 | 2.451493 | TTCCCCTTCCCTGCCACA | 60.451 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
1140 | 4492 | 4.629200 | GTCAAGATACAGTCCAAAGCTCTG | 59.371 | 45.833 | 0.00 | 0.00 | 35.60 | 3.35 |
1266 | 4638 | 1.067213 | GGTTCCTGAGAGCAGAGTGTC | 60.067 | 57.143 | 0.00 | 0.00 | 45.17 | 3.67 |
1277 | 4650 | 2.093606 | AGCAGAGTGTCCATCAGATGTG | 60.094 | 50.000 | 9.64 | 0.57 | 0.00 | 3.21 |
1278 | 4651 | 2.902523 | CAGAGTGTCCATCAGATGTGG | 58.097 | 52.381 | 9.64 | 0.00 | 38.11 | 4.17 |
1279 | 4652 | 2.498885 | CAGAGTGTCCATCAGATGTGGA | 59.501 | 50.000 | 9.64 | 0.00 | 43.26 | 4.02 |
1394 | 4788 | 0.994247 | ATGCCAGTGGAGTGGATTGA | 59.006 | 50.000 | 15.20 | 0.00 | 40.44 | 2.57 |
1402 | 4797 | 4.703575 | CAGTGGAGTGGATTGACATTTCAT | 59.296 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1403 | 4798 | 5.184479 | CAGTGGAGTGGATTGACATTTCATT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1404 | 4799 | 5.776716 | AGTGGAGTGGATTGACATTTCATTT | 59.223 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1405 | 4800 | 6.268387 | AGTGGAGTGGATTGACATTTCATTTT | 59.732 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
1406 | 4801 | 6.587608 | GTGGAGTGGATTGACATTTCATTTTC | 59.412 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1407 | 4802 | 6.267242 | TGGAGTGGATTGACATTTCATTTTCA | 59.733 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1456 | 4852 | 4.819088 | GTCTGCTCCTCAAGGGAAAATATC | 59.181 | 45.833 | 0.00 | 0.00 | 44.58 | 1.63 |
1499 | 5193 | 2.636830 | CTGCTGTTCTTGGTAGGATGG | 58.363 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1542 | 5236 | 3.317711 | TCTTGATTGGTTGCGTGTGAAAT | 59.682 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
1566 | 5264 | 7.373617 | TCTGAATATGTAGCATTTAGGACCA | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1591 | 5289 | 5.755861 | GGTTTCCAATCTAGTCTGTATCTGC | 59.244 | 44.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1599 | 5297 | 5.126779 | TCTAGTCTGTATCTGCAGTAGTGG | 58.873 | 45.833 | 14.67 | 3.19 | 37.70 | 4.00 |
1627 | 5325 | 4.237349 | AGTTTAGCACATTTTGGTTCCG | 57.763 | 40.909 | 0.00 | 0.00 | 37.13 | 4.30 |
1628 | 5326 | 3.886505 | AGTTTAGCACATTTTGGTTCCGA | 59.113 | 39.130 | 0.00 | 0.00 | 37.13 | 4.55 |
1629 | 5327 | 4.339814 | AGTTTAGCACATTTTGGTTCCGAA | 59.660 | 37.500 | 0.00 | 0.00 | 37.13 | 4.30 |
1630 | 5328 | 4.920640 | TTAGCACATTTTGGTTCCGAAA | 57.079 | 36.364 | 6.70 | 6.70 | 37.13 | 3.46 |
1631 | 5329 | 5.461032 | TTAGCACATTTTGGTTCCGAAAT | 57.539 | 34.783 | 10.34 | 10.34 | 37.13 | 2.17 |
1632 | 5330 | 4.335400 | AGCACATTTTGGTTCCGAAATT | 57.665 | 36.364 | 12.77 | 4.64 | 28.85 | 1.82 |
1633 | 5331 | 4.702831 | AGCACATTTTGGTTCCGAAATTT | 58.297 | 34.783 | 12.77 | 6.00 | 28.85 | 1.82 |
1634 | 5332 | 5.848406 | AGCACATTTTGGTTCCGAAATTTA | 58.152 | 33.333 | 12.77 | 0.00 | 28.85 | 1.40 |
1635 | 5333 | 5.925969 | AGCACATTTTGGTTCCGAAATTTAG | 59.074 | 36.000 | 12.77 | 6.58 | 28.85 | 1.85 |
1636 | 5334 | 5.120053 | GCACATTTTGGTTCCGAAATTTAGG | 59.880 | 40.000 | 10.86 | 10.86 | 30.16 | 2.69 |
1637 | 5335 | 6.451393 | CACATTTTGGTTCCGAAATTTAGGA | 58.549 | 36.000 | 15.28 | 15.28 | 30.16 | 2.94 |
1638 | 5336 | 7.096551 | CACATTTTGGTTCCGAAATTTAGGAT | 58.903 | 34.615 | 19.22 | 1.68 | 36.28 | 3.24 |
1639 | 5337 | 7.063308 | CACATTTTGGTTCCGAAATTTAGGATG | 59.937 | 37.037 | 19.22 | 14.68 | 36.28 | 3.51 |
1640 | 5338 | 4.712122 | TTGGTTCCGAAATTTAGGATGC | 57.288 | 40.909 | 19.22 | 14.73 | 36.28 | 3.91 |
1641 | 5339 | 2.680841 | TGGTTCCGAAATTTAGGATGCG | 59.319 | 45.455 | 19.22 | 4.48 | 36.28 | 4.73 |
1642 | 5340 | 2.681344 | GGTTCCGAAATTTAGGATGCGT | 59.319 | 45.455 | 19.22 | 0.00 | 36.28 | 5.24 |
1643 | 5341 | 3.872771 | GGTTCCGAAATTTAGGATGCGTA | 59.127 | 43.478 | 19.22 | 3.04 | 36.28 | 4.42 |
1644 | 5342 | 4.333372 | GGTTCCGAAATTTAGGATGCGTAA | 59.667 | 41.667 | 19.22 | 2.36 | 36.28 | 3.18 |
1645 | 5343 | 5.008316 | GGTTCCGAAATTTAGGATGCGTAAT | 59.992 | 40.000 | 19.22 | 0.00 | 36.28 | 1.89 |
1646 | 5344 | 5.666969 | TCCGAAATTTAGGATGCGTAATG | 57.333 | 39.130 | 15.28 | 0.00 | 0.00 | 1.90 |
1647 | 5345 | 5.120399 | TCCGAAATTTAGGATGCGTAATGT | 58.880 | 37.500 | 15.28 | 0.00 | 0.00 | 2.71 |
1648 | 5346 | 5.235616 | TCCGAAATTTAGGATGCGTAATGTC | 59.764 | 40.000 | 15.28 | 0.00 | 0.00 | 3.06 |
1649 | 5347 | 5.007234 | CCGAAATTTAGGATGCGTAATGTCA | 59.993 | 40.000 | 11.63 | 0.00 | 0.00 | 3.58 |
1650 | 5348 | 6.129393 | CGAAATTTAGGATGCGTAATGTCAG | 58.871 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1651 | 5349 | 6.238103 | CGAAATTTAGGATGCGTAATGTCAGT | 60.238 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1652 | 5350 | 5.991328 | ATTTAGGATGCGTAATGTCAGTG | 57.009 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
1653 | 5351 | 2.315925 | AGGATGCGTAATGTCAGTGG | 57.684 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1654 | 5352 | 1.831106 | AGGATGCGTAATGTCAGTGGA | 59.169 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1655 | 5353 | 1.933853 | GGATGCGTAATGTCAGTGGAC | 59.066 | 52.381 | 0.00 | 0.00 | 44.57 | 4.02 |
1656 | 5354 | 1.933853 | GATGCGTAATGTCAGTGGACC | 59.066 | 52.381 | 0.00 | 0.00 | 43.65 | 4.46 |
1657 | 5355 | 0.682292 | TGCGTAATGTCAGTGGACCA | 59.318 | 50.000 | 0.00 | 0.00 | 43.65 | 4.02 |
1658 | 5356 | 1.070914 | TGCGTAATGTCAGTGGACCAA | 59.929 | 47.619 | 0.00 | 0.00 | 43.65 | 3.67 |
1659 | 5357 | 2.290008 | TGCGTAATGTCAGTGGACCAAT | 60.290 | 45.455 | 0.00 | 0.00 | 43.65 | 3.16 |
1660 | 5358 | 2.095853 | GCGTAATGTCAGTGGACCAATG | 59.904 | 50.000 | 15.87 | 15.87 | 43.65 | 2.82 |
1661 | 5359 | 2.677836 | CGTAATGTCAGTGGACCAATGG | 59.322 | 50.000 | 21.14 | 0.00 | 43.65 | 3.16 |
1662 | 5360 | 2.220653 | AATGTCAGTGGACCAATGGG | 57.779 | 50.000 | 21.14 | 0.00 | 43.65 | 4.00 |
1663 | 5361 | 1.371467 | ATGTCAGTGGACCAATGGGA | 58.629 | 50.000 | 21.14 | 8.93 | 43.65 | 4.37 |
1664 | 5362 | 1.371467 | TGTCAGTGGACCAATGGGAT | 58.629 | 50.000 | 21.14 | 0.00 | 43.65 | 3.85 |
1665 | 5363 | 1.710244 | TGTCAGTGGACCAATGGGATT | 59.290 | 47.619 | 21.14 | 0.00 | 43.65 | 3.01 |
1666 | 5364 | 2.290896 | TGTCAGTGGACCAATGGGATTC | 60.291 | 50.000 | 21.14 | 8.15 | 43.65 | 2.52 |
1667 | 5365 | 2.025887 | GTCAGTGGACCAATGGGATTCT | 60.026 | 50.000 | 21.14 | 0.00 | 38.12 | 2.40 |
1700 | 5399 | 2.488153 | GACCTTGTGGGATGTTAACTGC | 59.512 | 50.000 | 7.22 | 0.00 | 38.76 | 4.40 |
1742 | 5447 | 2.105006 | AGTGCAGCACTTATGACTGG | 57.895 | 50.000 | 23.11 | 0.00 | 42.59 | 4.00 |
2124 | 5831 | 6.375174 | ACATAGTGCTTATTGTCATTTGCTCA | 59.625 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
2152 | 5859 | 0.107456 | AGAGGCATAATGACAGCGGG | 59.893 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2328 | 6035 | 3.713826 | TTTCCAATCCAGTGGGTAGTC | 57.286 | 47.619 | 9.92 | 0.00 | 39.34 | 2.59 |
2491 | 6242 | 6.294286 | GGATCTTAATTGTTCGTGTCCCAAAA | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
2657 | 6525 | 5.361427 | TCGATCTTTGTTCCTGTGTTTACA | 58.639 | 37.500 | 0.00 | 0.00 | 35.08 | 2.41 |
2692 | 6563 | 6.206787 | TGGGTGGATGGATACTTAAGAGTAA | 58.793 | 40.000 | 10.09 | 0.00 | 41.48 | 2.24 |
2729 | 6600 | 4.338682 | TGCTTCTCTCCCTCGTAGTAATTC | 59.661 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
2826 | 6813 | 3.146066 | GGATTAGCATTTCCGTGGCATA | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 3.14 |
2901 | 6891 | 0.886563 | ACTTTTCTGGATGCTGCTGC | 59.113 | 50.000 | 8.89 | 8.89 | 40.20 | 5.25 |
2903 | 6893 | 1.544691 | CTTTTCTGGATGCTGCTGCTT | 59.455 | 47.619 | 17.00 | 10.47 | 40.48 | 3.91 |
2943 | 6933 | 2.633488 | GCACCTTGTAGGGTCTTGATC | 58.367 | 52.381 | 0.00 | 0.00 | 40.58 | 2.92 |
2952 | 6944 | 0.037605 | GGGTCTTGATCGGTCGTGTT | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2972 | 6964 | 6.128553 | CGTGTTCAAACTGAATATGTAGCTGT | 60.129 | 38.462 | 0.00 | 0.00 | 38.79 | 4.40 |
3118 | 7172 | 4.579869 | ACAACATGTCAGTGGATTCCTAC | 58.420 | 43.478 | 0.00 | 1.02 | 0.00 | 3.18 |
3121 | 7175 | 5.441718 | ACATGTCAGTGGATTCCTACATT | 57.558 | 39.130 | 3.95 | 0.00 | 0.00 | 2.71 |
3139 | 7193 | 4.012374 | ACATTGGAGCTTGTAGGATGTTG | 58.988 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
3261 | 7414 | 3.081804 | GGACCTTAATTGGTGGTGTCTG | 58.918 | 50.000 | 4.02 | 0.00 | 41.00 | 3.51 |
3273 | 7426 | 2.880890 | GTGGTGTCTGAAAGCTGAACAT | 59.119 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
3278 | 7431 | 4.697352 | GTGTCTGAAAGCTGAACATGGTAT | 59.303 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3325 | 7518 | 5.472137 | TCTGTAGGTTCTTAATTGTTGGTGC | 59.528 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3351 | 7544 | 9.492973 | CCTCAAAAACTGAATATGTTTTCCATT | 57.507 | 29.630 | 5.29 | 0.00 | 43.94 | 3.16 |
3468 | 7818 | 3.302740 | GCGCTCTGTTATGAACTGTATGC | 60.303 | 47.826 | 0.00 | 0.00 | 0.00 | 3.14 |
3600 | 7956 | 2.159327 | AATTGAAAGTTGCCTGCTGC | 57.841 | 45.000 | 0.00 | 0.00 | 41.77 | 5.25 |
3639 | 7999 | 6.263516 | AGAATGTCAGTGGATCAACATTTG | 57.736 | 37.500 | 2.34 | 0.00 | 41.18 | 2.32 |
3674 | 8040 | 3.876320 | GCATTTTCCCTTTTTGCTTGTCA | 59.124 | 39.130 | 0.00 | 0.00 | 0.00 | 3.58 |
3740 | 8106 | 7.630082 | TCTTGCTAGGATAACAAAATGGTACT | 58.370 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
3741 | 8107 | 7.769044 | TCTTGCTAGGATAACAAAATGGTACTC | 59.231 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3742 | 8108 | 6.354130 | TGCTAGGATAACAAAATGGTACTCC | 58.646 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3743 | 8109 | 5.763698 | GCTAGGATAACAAAATGGTACTCCC | 59.236 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3744 | 8110 | 6.409349 | GCTAGGATAACAAAATGGTACTCCCT | 60.409 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
3745 | 8111 | 6.002653 | AGGATAACAAAATGGTACTCCCTC | 57.997 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3746 | 8112 | 5.104067 | AGGATAACAAAATGGTACTCCCTCC | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3747 | 8113 | 2.781681 | ACAAAATGGTACTCCCTCCG | 57.218 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3748 | 8114 | 1.982958 | ACAAAATGGTACTCCCTCCGT | 59.017 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
3749 | 8115 | 3.175594 | ACAAAATGGTACTCCCTCCGTA | 58.824 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3750 | 8116 | 3.583966 | ACAAAATGGTACTCCCTCCGTAA | 59.416 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3751 | 8117 | 4.041938 | ACAAAATGGTACTCCCTCCGTAAA | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
3752 | 8118 | 4.482952 | AAATGGTACTCCCTCCGTAAAG | 57.517 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
3753 | 8119 | 2.610438 | TGGTACTCCCTCCGTAAAGT | 57.390 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
3754 | 8120 | 3.737559 | TGGTACTCCCTCCGTAAAGTA | 57.262 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
3755 | 8121 | 4.046286 | TGGTACTCCCTCCGTAAAGTAA | 57.954 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3756 | 8122 | 4.613437 | TGGTACTCCCTCCGTAAAGTAAT | 58.387 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
3757 | 8123 | 5.765510 | TGGTACTCCCTCCGTAAAGTAATA | 58.234 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
3758 | 8124 | 6.376248 | TGGTACTCCCTCCGTAAAGTAATAT | 58.624 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3759 | 8125 | 7.526041 | TGGTACTCCCTCCGTAAAGTAATATA | 58.474 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
3760 | 8126 | 8.004215 | TGGTACTCCCTCCGTAAAGTAATATAA | 58.996 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3761 | 8127 | 8.518702 | GGTACTCCCTCCGTAAAGTAATATAAG | 58.481 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
3762 | 8128 | 9.289782 | GTACTCCCTCCGTAAAGTAATATAAGA | 57.710 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
3763 | 8129 | 8.406730 | ACTCCCTCCGTAAAGTAATATAAGAG | 57.593 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
3764 | 8130 | 7.039853 | ACTCCCTCCGTAAAGTAATATAAGAGC | 60.040 | 40.741 | 0.00 | 0.00 | 0.00 | 4.09 |
3765 | 8131 | 6.072286 | TCCCTCCGTAAAGTAATATAAGAGCG | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 5.03 |
3766 | 8132 | 6.294397 | CCCTCCGTAAAGTAATATAAGAGCGT | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 5.07 |
3767 | 8133 | 7.144000 | CCTCCGTAAAGTAATATAAGAGCGTT | 58.856 | 38.462 | 0.00 | 0.00 | 0.00 | 4.84 |
3768 | 8134 | 7.650903 | CCTCCGTAAAGTAATATAAGAGCGTTT | 59.349 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
3769 | 8135 | 9.669353 | CTCCGTAAAGTAATATAAGAGCGTTTA | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3770 | 8136 | 9.669353 | TCCGTAAAGTAATATAAGAGCGTTTAG | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
3771 | 8137 | 9.669353 | CCGTAAAGTAATATAAGAGCGTTTAGA | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
3784 | 8150 | 8.828688 | AAGAGCGTTTAGAACACTATTTTAGT | 57.171 | 30.769 | 0.00 | 0.00 | 40.28 | 2.24 |
3817 | 8183 | 9.813446 | AACGTTCTTATATTAGTTTACAGAGGG | 57.187 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
3818 | 8184 | 9.193806 | ACGTTCTTATATTAGTTTACAGAGGGA | 57.806 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
3819 | 8185 | 9.680315 | CGTTCTTATATTAGTTTACAGAGGGAG | 57.320 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
4164 | 8944 | 9.753674 | TTGTATTTTCTCCAGTTCATTATCCTT | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
4194 | 8977 | 5.163723 | TGTTGCTGCTGATCTTTATGCTAAC | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
4317 | 9100 | 1.843992 | CTCTGTGTTGCAAAAGCACC | 58.156 | 50.000 | 14.11 | 0.00 | 32.62 | 5.01 |
4403 | 9186 | 0.528924 | ACATACGGCTGCAACGAGTA | 59.471 | 50.000 | 16.24 | 6.94 | 34.93 | 2.59 |
4530 | 9313 | 1.667830 | CCACTTCGTCACCGCACAT | 60.668 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
4743 | 9526 | 1.376424 | CTCGGCTGCTCATGGTGTT | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
5140 | 9985 | 8.401709 | AGTAGAATTTATCTTTGCTTAGCTTGC | 58.598 | 33.333 | 5.60 | 0.00 | 39.71 | 4.01 |
5158 | 10003 | 5.814705 | AGCTTGCTGTCTTGTTATGTATCTC | 59.185 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
5409 | 10284 | 6.439636 | TTCCTCTCTCAGAAAAATCTTCCA | 57.560 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
5514 | 10396 | 7.817478 | TCCTCCTTTTTGAAAAAGAAGACAAAC | 59.183 | 33.333 | 26.93 | 0.00 | 33.09 | 2.93 |
5648 | 10533 | 6.265196 | TCTGTAGCTTGTTGTCATTTGGAATT | 59.735 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
5649 | 10534 | 7.446931 | TCTGTAGCTTGTTGTCATTTGGAATTA | 59.553 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5710 | 10659 | 9.965902 | ATGAATGAGTTTCCTCTTTGTTATACT | 57.034 | 29.630 | 0.00 | 0.00 | 38.61 | 2.12 |
5711 | 10660 | 9.436957 | TGAATGAGTTTCCTCTTTGTTATACTC | 57.563 | 33.333 | 0.00 | 0.00 | 38.61 | 2.59 |
5712 | 10661 | 8.794335 | AATGAGTTTCCTCTTTGTTATACTCC | 57.206 | 34.615 | 0.00 | 0.00 | 38.61 | 3.85 |
5713 | 10662 | 6.708285 | TGAGTTTCCTCTTTGTTATACTCCC | 58.292 | 40.000 | 0.00 | 0.00 | 38.61 | 4.30 |
5714 | 10663 | 6.500751 | TGAGTTTCCTCTTTGTTATACTCCCT | 59.499 | 38.462 | 0.00 | 0.00 | 38.61 | 4.20 |
5715 | 10664 | 6.948589 | AGTTTCCTCTTTGTTATACTCCCTC | 58.051 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5716 | 10665 | 6.731448 | AGTTTCCTCTTTGTTATACTCCCTCT | 59.269 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
5717 | 10666 | 6.546428 | TTCCTCTTTGTTATACTCCCTCTG | 57.454 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
5718 | 10667 | 5.590818 | TCCTCTTTGTTATACTCCCTCTGT | 58.409 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
5720 | 10669 | 5.163395 | CCTCTTTGTTATACTCCCTCTGTCC | 60.163 | 48.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5723 | 10672 | 7.186972 | TCTTTGTTATACTCCCTCTGTCCTAA | 58.813 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
5725 | 10674 | 7.801893 | TTGTTATACTCCCTCTGTCCTAAAA | 57.198 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
5726 | 10675 | 7.989947 | TGTTATACTCCCTCTGTCCTAAAAT | 57.010 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5727 | 10676 | 8.388656 | TGTTATACTCCCTCTGTCCTAAAATT | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
5728 | 10677 | 8.483758 | TGTTATACTCCCTCTGTCCTAAAATTC | 58.516 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
5729 | 10678 | 8.706521 | GTTATACTCCCTCTGTCCTAAAATTCT | 58.293 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
5730 | 10679 | 7.757242 | ATACTCCCTCTGTCCTAAAATTCTT | 57.243 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
5731 | 10680 | 5.810095 | ACTCCCTCTGTCCTAAAATTCTTG | 58.190 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
5736 | 10685 | 7.236847 | TCCCTCTGTCCTAAAATTCTTGTCTTA | 59.763 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
5737 | 10686 | 7.550906 | CCCTCTGTCCTAAAATTCTTGTCTTAG | 59.449 | 40.741 | 0.00 | 0.00 | 0.00 | 2.18 |
5738 | 10687 | 8.314751 | CCTCTGTCCTAAAATTCTTGTCTTAGA | 58.685 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
5742 | 10691 | 9.151471 | TGTCCTAAAATTCTTGTCTTAGATTCG | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
5743 | 10692 | 9.152595 | GTCCTAAAATTCTTGTCTTAGATTCGT | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
5744 | 10693 | 9.367444 | TCCTAAAATTCTTGTCTTAGATTCGTC | 57.633 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
5753 | 10702 | 9.004717 | TCTTGTCTTAGATTCGTCTAGATATGG | 57.995 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
5796 | 10745 | 8.960591 | ACCATGTATCTAAGACAAGATTTTTGG | 58.039 | 33.333 | 0.00 | 0.00 | 37.41 | 3.28 |
5797 | 10746 | 8.408601 | CCATGTATCTAAGACAAGATTTTTGGG | 58.591 | 37.037 | 0.00 | 0.00 | 37.41 | 4.12 |
5798 | 10747 | 9.177608 | CATGTATCTAAGACAAGATTTTTGGGA | 57.822 | 33.333 | 0.00 | 0.00 | 37.41 | 4.37 |
5799 | 10748 | 8.561738 | TGTATCTAAGACAAGATTTTTGGGAC | 57.438 | 34.615 | 0.00 | 0.00 | 37.41 | 4.46 |
5800 | 10749 | 6.743575 | ATCTAAGACAAGATTTTTGGGACG | 57.256 | 37.500 | 0.00 | 0.00 | 32.09 | 4.79 |
5803 | 10752 | 3.412386 | AGACAAGATTTTTGGGACGGAG | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
5804 | 10753 | 2.488153 | GACAAGATTTTTGGGACGGAGG | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5805 | 10754 | 1.818674 | CAAGATTTTTGGGACGGAGGG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5806 | 10755 | 1.368374 | AGATTTTTGGGACGGAGGGA | 58.632 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5807 | 10756 | 1.282157 | AGATTTTTGGGACGGAGGGAG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
5808 | 10757 | 1.004394 | GATTTTTGGGACGGAGGGAGT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
5809 | 10758 | 1.732117 | TTTTTGGGACGGAGGGAGTA | 58.268 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
5810 | 10759 | 0.978907 | TTTTGGGACGGAGGGAGTAC | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
5822 | 10771 | 4.120589 | GGAGGGAGTACAAAATAGCTTCG | 58.879 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
5872 | 11266 | 0.679505 | AGACCGCACATACACACAGT | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
70 | 71 | 1.671845 | GAAGAGCCATCGTCGACTAGT | 59.328 | 52.381 | 14.70 | 0.00 | 0.00 | 2.57 |
78 | 79 | 1.016130 | CGTTGCAGAAGAGCCATCGT | 61.016 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
108 | 109 | 1.772182 | CTTAACCCTAGATCTGCGCG | 58.228 | 55.000 | 5.18 | 0.00 | 0.00 | 6.86 |
135 | 136 | 2.910199 | TCATGAGCCACATCTTAGTGC | 58.090 | 47.619 | 0.00 | 0.00 | 38.18 | 4.40 |
136 | 137 | 3.624861 | GGTTCATGAGCCACATCTTAGTG | 59.375 | 47.826 | 22.53 | 0.00 | 37.07 | 2.74 |
137 | 138 | 3.264193 | TGGTTCATGAGCCACATCTTAGT | 59.736 | 43.478 | 25.76 | 0.00 | 36.75 | 2.24 |
138 | 139 | 3.877559 | TGGTTCATGAGCCACATCTTAG | 58.122 | 45.455 | 25.76 | 0.00 | 36.75 | 2.18 |
139 | 140 | 3.998913 | TGGTTCATGAGCCACATCTTA | 57.001 | 42.857 | 25.76 | 2.81 | 36.75 | 2.10 |
148 | 161 | 2.843701 | CCATAGAGGTGGTTCATGAGC | 58.156 | 52.381 | 0.04 | 0.04 | 34.46 | 4.26 |
235 | 3542 | 7.813852 | AAAGTTTTGTGTACATTGCGTTAAA | 57.186 | 28.000 | 0.00 | 0.00 | 0.00 | 1.52 |
301 | 3608 | 3.232213 | TGATTGACGTCTAGCTGAACC | 57.768 | 47.619 | 17.92 | 0.00 | 0.00 | 3.62 |
302 | 3609 | 5.348724 | TCAAATGATTGACGTCTAGCTGAAC | 59.651 | 40.000 | 17.92 | 0.00 | 40.59 | 3.18 |
310 | 3617 | 9.480053 | AAATTTCATTTCAAATGATTGACGTCT | 57.520 | 25.926 | 17.92 | 0.00 | 45.01 | 4.18 |
321 | 3628 | 8.435982 | TGGACTTACCCAAATTTCATTTCAAAT | 58.564 | 29.630 | 0.00 | 0.00 | 38.00 | 2.32 |
346 | 3654 | 1.407437 | CCTCCCTTCCCGACAGAAATG | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 2.32 |
355 | 3663 | 1.758906 | GACTCCTCCTCCCTTCCCG | 60.759 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
372 | 3680 | 2.613739 | GATGTAGGTGCTCTGCGCGA | 62.614 | 60.000 | 12.10 | 1.90 | 43.27 | 5.87 |
395 | 3703 | 4.262635 | CCTGCATCCCTAAGATATGTCGTT | 60.263 | 45.833 | 0.00 | 0.00 | 32.37 | 3.85 |
468 | 3790 | 2.034221 | GTGAACCTGCACCCCCTC | 59.966 | 66.667 | 0.00 | 0.00 | 32.68 | 4.30 |
495 | 3817 | 1.039068 | TAAACCGACGAACCACCTGA | 58.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
523 | 3845 | 2.032071 | CTTGTCACCACCCCCGAC | 59.968 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
534 | 3856 | 4.776322 | CCATCGCCGGCCTTGTCA | 62.776 | 66.667 | 23.46 | 0.00 | 0.00 | 3.58 |
545 | 3867 | 1.006805 | CTCGACCATCCTCCATCGC | 60.007 | 63.158 | 0.00 | 0.00 | 34.59 | 4.58 |
579 | 3901 | 2.847234 | ACTCCCACAACCGCCTCA | 60.847 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
615 | 3937 | 2.511600 | CCTAACCGCTTGCCTCCG | 60.512 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
648 | 3970 | 4.543590 | TCTCTTTTTCTTCTCATCGCCT | 57.456 | 40.909 | 0.00 | 0.00 | 0.00 | 5.52 |
672 | 3994 | 7.882791 | TCTTCAACATCAAACTGGTACATACAT | 59.117 | 33.333 | 0.00 | 0.00 | 38.20 | 2.29 |
683 | 4005 | 6.605849 | CGTGATTCATCTTCAACATCAAACT | 58.394 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
703 | 4025 | 0.904649 | AGATCCAATGGACAGCGTGA | 59.095 | 50.000 | 3.09 | 0.00 | 32.98 | 4.35 |
707 | 4029 | 3.548770 | TGATCAAGATCCAATGGACAGC | 58.451 | 45.455 | 3.09 | 0.00 | 37.02 | 4.40 |
737 | 4059 | 3.356290 | CACCCTCTTATCCCAACCTTTG | 58.644 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
738 | 4060 | 2.311841 | CCACCCTCTTATCCCAACCTTT | 59.688 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
739 | 4061 | 1.923148 | CCACCCTCTTATCCCAACCTT | 59.077 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
740 | 4062 | 1.082194 | TCCACCCTCTTATCCCAACCT | 59.918 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
742 | 4064 | 3.732048 | TTTCCACCCTCTTATCCCAAC | 57.268 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
743 | 4065 | 3.052944 | CCATTTCCACCCTCTTATCCCAA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 4.12 |
745 | 4067 | 2.783510 | TCCATTTCCACCCTCTTATCCC | 59.216 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
746 | 4068 | 3.459969 | AGTCCATTTCCACCCTCTTATCC | 59.540 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
747 | 4069 | 4.164221 | TCAGTCCATTTCCACCCTCTTATC | 59.836 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
748 | 4070 | 4.111577 | TCAGTCCATTTCCACCCTCTTAT | 58.888 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
749 | 4071 | 3.526899 | TCAGTCCATTTCCACCCTCTTA | 58.473 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
750 | 4072 | 2.348472 | TCAGTCCATTTCCACCCTCTT | 58.652 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
751 | 4073 | 2.044793 | TCAGTCCATTTCCACCCTCT | 57.955 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
752 | 4074 | 2.422093 | GGATCAGTCCATTTCCACCCTC | 60.422 | 54.545 | 0.00 | 0.00 | 44.42 | 4.30 |
753 | 4075 | 1.566231 | GGATCAGTCCATTTCCACCCT | 59.434 | 52.381 | 0.00 | 0.00 | 44.42 | 4.34 |
765 | 4087 | 7.662604 | AAATTCATTTTGCAAAGGATCAGTC | 57.337 | 32.000 | 12.41 | 0.00 | 0.00 | 3.51 |
820 | 4142 | 8.500753 | AACGTAGATGCCAGTAATGAAAATAA | 57.499 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
822 | 4144 | 6.823689 | AGAACGTAGATGCCAGTAATGAAAAT | 59.176 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
829 | 4151 | 8.418662 | ACAATATAAGAACGTAGATGCCAGTAA | 58.581 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
830 | 4152 | 7.865889 | CACAATATAAGAACGTAGATGCCAGTA | 59.134 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
839 | 4161 | 7.140048 | GTCCCTCTCACAATATAAGAACGTAG | 58.860 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
842 | 4164 | 4.976731 | CGTCCCTCTCACAATATAAGAACG | 59.023 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
843 | 4165 | 5.068723 | TCCGTCCCTCTCACAATATAAGAAC | 59.931 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
846 | 4168 | 4.585162 | ACTCCGTCCCTCTCACAATATAAG | 59.415 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
847 | 4169 | 4.543689 | ACTCCGTCCCTCTCACAATATAA | 58.456 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
848 | 4170 | 4.180377 | ACTCCGTCCCTCTCACAATATA | 57.820 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
849 | 4171 | 3.033659 | ACTCCGTCCCTCTCACAATAT | 57.966 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
851 | 4173 | 2.526888 | TACTCCGTCCCTCTCACAAT | 57.473 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
852 | 4174 | 2.025226 | AGATACTCCGTCCCTCTCACAA | 60.025 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
853 | 4175 | 1.564818 | AGATACTCCGTCCCTCTCACA | 59.435 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
854 | 4176 | 2.351706 | AGATACTCCGTCCCTCTCAC | 57.648 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
855 | 4177 | 2.656002 | CAAGATACTCCGTCCCTCTCA | 58.344 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
856 | 4178 | 1.338655 | GCAAGATACTCCGTCCCTCTC | 59.661 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
857 | 4179 | 1.342076 | TGCAAGATACTCCGTCCCTCT | 60.342 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
858 | 4180 | 1.067821 | CTGCAAGATACTCCGTCCCTC | 59.932 | 57.143 | 0.00 | 0.00 | 34.07 | 4.30 |
859 | 4181 | 1.115467 | CTGCAAGATACTCCGTCCCT | 58.885 | 55.000 | 0.00 | 0.00 | 34.07 | 4.20 |
860 | 4182 | 0.530870 | GCTGCAAGATACTCCGTCCC | 60.531 | 60.000 | 0.00 | 0.00 | 34.07 | 4.46 |
861 | 4183 | 0.530870 | GGCTGCAAGATACTCCGTCC | 60.531 | 60.000 | 0.50 | 0.00 | 34.07 | 4.79 |
862 | 4184 | 0.175760 | TGGCTGCAAGATACTCCGTC | 59.824 | 55.000 | 0.50 | 0.00 | 34.07 | 4.79 |
863 | 4185 | 0.176680 | CTGGCTGCAAGATACTCCGT | 59.823 | 55.000 | 0.00 | 0.00 | 34.07 | 4.69 |
864 | 4186 | 1.156645 | GCTGGCTGCAAGATACTCCG | 61.157 | 60.000 | 8.57 | 0.00 | 42.31 | 4.63 |
865 | 4187 | 1.156645 | CGCTGGCTGCAAGATACTCC | 61.157 | 60.000 | 16.76 | 0.00 | 43.06 | 3.85 |
866 | 4188 | 1.770085 | GCGCTGGCTGCAAGATACTC | 61.770 | 60.000 | 16.76 | 0.00 | 43.06 | 2.59 |
867 | 4189 | 1.817099 | GCGCTGGCTGCAAGATACT | 60.817 | 57.895 | 16.76 | 0.00 | 43.06 | 2.12 |
868 | 4190 | 1.647545 | TTGCGCTGGCTGCAAGATAC | 61.648 | 55.000 | 16.76 | 0.00 | 46.62 | 2.24 |
869 | 4191 | 1.377072 | TTGCGCTGGCTGCAAGATA | 60.377 | 52.632 | 16.76 | 0.00 | 46.62 | 1.98 |
870 | 4192 | 2.674033 | TTGCGCTGGCTGCAAGAT | 60.674 | 55.556 | 16.76 | 0.00 | 46.62 | 2.40 |
875 | 4197 | 4.283403 | TTTGGTTGCGCTGGCTGC | 62.283 | 61.111 | 9.73 | 6.26 | 40.82 | 5.25 |
884 | 4206 | 0.827368 | TTTGGTGAGGGTTTGGTTGC | 59.173 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
952 | 4279 | 2.919856 | AGCAGAGCCGAGGTGTGT | 60.920 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
1116 | 4468 | 4.530161 | AGAGCTTTGGACTGTATCTTGACT | 59.470 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1266 | 4638 | 0.812811 | CAGCCGTCCACATCTGATGG | 60.813 | 60.000 | 20.83 | 6.77 | 41.08 | 3.51 |
1277 | 4650 | 2.202810 | GAGCAGCTACAGCCGTCC | 60.203 | 66.667 | 0.00 | 0.00 | 43.38 | 4.79 |
1278 | 4651 | 2.202810 | GGAGCAGCTACAGCCGTC | 60.203 | 66.667 | 0.00 | 0.00 | 43.38 | 4.79 |
1279 | 4652 | 3.775654 | GGGAGCAGCTACAGCCGT | 61.776 | 66.667 | 7.05 | 0.00 | 43.38 | 5.68 |
1280 | 4653 | 4.537433 | GGGGAGCAGCTACAGCCG | 62.537 | 72.222 | 7.05 | 0.00 | 43.38 | 5.52 |
1296 | 4669 | 4.465886 | ACAGCCTACTAGTATCAGTGAGG | 58.534 | 47.826 | 2.33 | 2.02 | 0.00 | 3.86 |
1394 | 4788 | 7.931578 | ATTCATGCCATTGAAAATGAAATGT | 57.068 | 28.000 | 10.57 | 0.00 | 41.11 | 2.71 |
1456 | 4852 | 4.379499 | GCATTCAGAAAGGTAAAACGGGAG | 60.379 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1499 | 5193 | 0.451783 | CCTACAAGGCGGCATTTGTC | 59.548 | 55.000 | 17.97 | 0.00 | 38.41 | 3.18 |
1542 | 5236 | 7.373617 | TGGTCCTAAATGCTACATATTCAGA | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1566 | 5264 | 6.407525 | GCAGATACAGACTAGATTGGAAACCT | 60.408 | 42.308 | 0.00 | 0.00 | 0.00 | 3.50 |
1622 | 5320 | 5.473796 | TTACGCATCCTAAATTTCGGAAC | 57.526 | 39.130 | 14.81 | 9.57 | 32.12 | 3.62 |
1624 | 5322 | 5.120399 | ACATTACGCATCCTAAATTTCGGA | 58.880 | 37.500 | 13.37 | 13.37 | 0.00 | 4.55 |
1625 | 5323 | 5.007234 | TGACATTACGCATCCTAAATTTCGG | 59.993 | 40.000 | 2.29 | 2.29 | 0.00 | 4.30 |
1626 | 5324 | 6.043327 | TGACATTACGCATCCTAAATTTCG | 57.957 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
1627 | 5325 | 6.907212 | CACTGACATTACGCATCCTAAATTTC | 59.093 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
1628 | 5326 | 6.183360 | CCACTGACATTACGCATCCTAAATTT | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
1629 | 5327 | 5.296780 | CCACTGACATTACGCATCCTAAATT | 59.703 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1630 | 5328 | 4.816385 | CCACTGACATTACGCATCCTAAAT | 59.184 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1631 | 5329 | 4.081365 | TCCACTGACATTACGCATCCTAAA | 60.081 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
1632 | 5330 | 3.449377 | TCCACTGACATTACGCATCCTAA | 59.551 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
1633 | 5331 | 3.028130 | TCCACTGACATTACGCATCCTA | 58.972 | 45.455 | 0.00 | 0.00 | 0.00 | 2.94 |
1634 | 5332 | 1.831106 | TCCACTGACATTACGCATCCT | 59.169 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
1635 | 5333 | 1.933853 | GTCCACTGACATTACGCATCC | 59.066 | 52.381 | 0.00 | 0.00 | 41.37 | 3.51 |
1636 | 5334 | 1.933853 | GGTCCACTGACATTACGCATC | 59.066 | 52.381 | 0.00 | 0.00 | 43.65 | 3.91 |
1637 | 5335 | 1.277842 | TGGTCCACTGACATTACGCAT | 59.722 | 47.619 | 0.00 | 0.00 | 43.65 | 4.73 |
1638 | 5336 | 0.682292 | TGGTCCACTGACATTACGCA | 59.318 | 50.000 | 0.00 | 0.00 | 43.65 | 5.24 |
1639 | 5337 | 1.803334 | TTGGTCCACTGACATTACGC | 58.197 | 50.000 | 0.00 | 0.00 | 43.65 | 4.42 |
1640 | 5338 | 2.677836 | CCATTGGTCCACTGACATTACG | 59.322 | 50.000 | 10.72 | 0.00 | 43.65 | 3.18 |
1641 | 5339 | 3.016736 | CCCATTGGTCCACTGACATTAC | 58.983 | 50.000 | 10.72 | 0.00 | 43.65 | 1.89 |
1642 | 5340 | 2.916269 | TCCCATTGGTCCACTGACATTA | 59.084 | 45.455 | 10.72 | 0.00 | 43.65 | 1.90 |
1643 | 5341 | 1.710244 | TCCCATTGGTCCACTGACATT | 59.290 | 47.619 | 10.72 | 0.00 | 43.65 | 2.71 |
1644 | 5342 | 1.371467 | TCCCATTGGTCCACTGACAT | 58.629 | 50.000 | 10.72 | 0.00 | 43.65 | 3.06 |
1645 | 5343 | 1.371467 | ATCCCATTGGTCCACTGACA | 58.629 | 50.000 | 10.72 | 0.00 | 43.65 | 3.58 |
1646 | 5344 | 2.025887 | AGAATCCCATTGGTCCACTGAC | 60.026 | 50.000 | 10.72 | 0.00 | 40.98 | 3.51 |
1647 | 5345 | 2.278245 | AGAATCCCATTGGTCCACTGA | 58.722 | 47.619 | 10.72 | 0.00 | 0.00 | 3.41 |
1648 | 5346 | 2.814805 | AGAATCCCATTGGTCCACTG | 57.185 | 50.000 | 2.17 | 2.17 | 0.00 | 3.66 |
1649 | 5347 | 3.564352 | GGAAAGAATCCCATTGGTCCACT | 60.564 | 47.826 | 1.20 | 0.00 | 43.00 | 4.00 |
1650 | 5348 | 2.760650 | GGAAAGAATCCCATTGGTCCAC | 59.239 | 50.000 | 1.20 | 0.00 | 43.00 | 4.02 |
1651 | 5349 | 3.100207 | GGAAAGAATCCCATTGGTCCA | 57.900 | 47.619 | 1.20 | 0.00 | 43.00 | 4.02 |
1662 | 5360 | 5.952347 | ACAAGGTCCCATTTAGGAAAGAATC | 59.048 | 40.000 | 0.00 | 0.00 | 41.22 | 2.52 |
1663 | 5361 | 5.716703 | CACAAGGTCCCATTTAGGAAAGAAT | 59.283 | 40.000 | 0.00 | 0.00 | 41.22 | 2.40 |
1664 | 5362 | 5.076873 | CACAAGGTCCCATTTAGGAAAGAA | 58.923 | 41.667 | 0.00 | 0.00 | 41.22 | 2.52 |
1665 | 5363 | 4.508405 | CCACAAGGTCCCATTTAGGAAAGA | 60.508 | 45.833 | 0.00 | 0.00 | 41.22 | 2.52 |
1666 | 5364 | 3.763897 | CCACAAGGTCCCATTTAGGAAAG | 59.236 | 47.826 | 0.00 | 0.00 | 41.22 | 2.62 |
1667 | 5365 | 3.501385 | CCCACAAGGTCCCATTTAGGAAA | 60.501 | 47.826 | 0.00 | 0.00 | 41.22 | 3.13 |
1700 | 5399 | 3.565482 | TGTTTTTAGCTTGGAGACAGCAG | 59.435 | 43.478 | 0.00 | 0.00 | 44.54 | 4.24 |
1742 | 5447 | 3.891049 | ACTGCCCACTAGATTGGAAATC | 58.109 | 45.455 | 0.00 | 0.00 | 39.24 | 2.17 |
2124 | 5831 | 7.467811 | CGCTGTCATTATGCCTCTTAAATTTCT | 60.468 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2152 | 5859 | 1.092921 | TATGCCACCGAAATGCCGAC | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2206 | 5913 | 5.700402 | ATCCTAGCAAGAATACCAACAGT | 57.300 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
2379 | 6130 | 1.066573 | CCCTGTTCAGCTTCGAGACAT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
2543 | 6411 | 6.743575 | ATAGTTCATAACAAGAGTGCAACC | 57.256 | 37.500 | 0.00 | 0.00 | 37.80 | 3.77 |
2692 | 6563 | 7.237263 | AGGGAGAGAAGCATCTACATCAATATT | 59.763 | 37.037 | 0.00 | 0.00 | 35.54 | 1.28 |
2868 | 6858 | 9.014297 | CATCCAGAAAAGTAAATGGAACTACTT | 57.986 | 33.333 | 0.00 | 0.00 | 44.63 | 2.24 |
2869 | 6859 | 7.121315 | GCATCCAGAAAAGTAAATGGAACTACT | 59.879 | 37.037 | 0.00 | 0.00 | 44.63 | 2.57 |
2870 | 6860 | 7.121315 | AGCATCCAGAAAAGTAAATGGAACTAC | 59.879 | 37.037 | 0.00 | 0.00 | 44.63 | 2.73 |
2901 | 6891 | 4.321230 | GCCACTTGTTCATCCTACCAAAAG | 60.321 | 45.833 | 0.00 | 0.00 | 0.00 | 2.27 |
2903 | 6893 | 3.153919 | GCCACTTGTTCATCCTACCAAA | 58.846 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
2943 | 6933 | 4.151689 | ACATATTCAGTTTGAACACGACCG | 59.848 | 41.667 | 0.00 | 0.00 | 39.45 | 4.79 |
2952 | 6944 | 7.764443 | GTCCTAACAGCTACATATTCAGTTTGA | 59.236 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
2972 | 6964 | 5.098663 | ACTAGATTGGAAACTGGGTCCTAA | 58.901 | 41.667 | 0.00 | 0.00 | 36.03 | 2.69 |
3118 | 7172 | 4.095483 | GTCAACATCCTACAAGCTCCAATG | 59.905 | 45.833 | 0.00 | 0.00 | 0.00 | 2.82 |
3121 | 7175 | 2.906389 | AGTCAACATCCTACAAGCTCCA | 59.094 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3139 | 7193 | 1.140816 | GCTTCGAGACACCAACAGTC | 58.859 | 55.000 | 0.00 | 0.00 | 36.26 | 3.51 |
3261 | 7414 | 6.261118 | CAGCTTAATACCATGTTCAGCTTTC | 58.739 | 40.000 | 1.58 | 0.00 | 34.79 | 2.62 |
3273 | 7426 | 8.251383 | AGTAATAAGAGAGCAGCTTAATACCA | 57.749 | 34.615 | 0.00 | 0.00 | 35.96 | 3.25 |
3278 | 7431 | 6.836527 | AGAGGAGTAATAAGAGAGCAGCTTAA | 59.163 | 38.462 | 0.00 | 0.00 | 32.16 | 1.85 |
3325 | 7518 | 9.492973 | AATGGAAAACATATTCAGTTTTTGAGG | 57.507 | 29.630 | 5.63 | 0.00 | 46.01 | 3.86 |
3351 | 7544 | 6.996180 | AGTAAGGGATAGCTAAGTTATGCA | 57.004 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
3423 | 7773 | 1.785041 | GCGTGCAGAAACAGGAAGCA | 61.785 | 55.000 | 0.00 | 0.00 | 32.64 | 3.91 |
3448 | 7798 | 5.745514 | CATGCATACAGTTCATAACAGAGC | 58.254 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
3468 | 7818 | 2.413765 | CGGAAGAAGAAAGTGCAGCATG | 60.414 | 50.000 | 0.00 | 0.00 | 40.87 | 4.06 |
3674 | 8040 | 9.665719 | ACAAGTAAATGGAAAACATGTTTCTTT | 57.334 | 25.926 | 23.47 | 19.76 | 40.44 | 2.52 |
3740 | 8106 | 6.072286 | CGCTCTTATATTACTTTACGGAGGGA | 60.072 | 42.308 | 0.00 | 0.00 | 34.63 | 4.20 |
3741 | 8107 | 6.091437 | CGCTCTTATATTACTTTACGGAGGG | 58.909 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3742 | 8108 | 6.675987 | ACGCTCTTATATTACTTTACGGAGG | 58.324 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3743 | 8109 | 8.571461 | AAACGCTCTTATATTACTTTACGGAG | 57.429 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
3744 | 8110 | 9.669353 | CTAAACGCTCTTATATTACTTTACGGA | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
3745 | 8111 | 9.669353 | TCTAAACGCTCTTATATTACTTTACGG | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
3791 | 8157 | 9.813446 | CCCTCTGTAAACTAATATAAGAACGTT | 57.187 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
3792 | 8158 | 9.193806 | TCCCTCTGTAAACTAATATAAGAACGT | 57.806 | 33.333 | 0.00 | 0.00 | 0.00 | 3.99 |
3793 | 8159 | 9.680315 | CTCCCTCTGTAAACTAATATAAGAACG | 57.320 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
3798 | 8164 | 9.940974 | TGGTACTCCCTCTGTAAACTAATATAA | 57.059 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3800 | 8166 | 8.871125 | CATGGTACTCCCTCTGTAAACTAATAT | 58.129 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
3801 | 8167 | 7.842743 | ACATGGTACTCCCTCTGTAAACTAATA | 59.157 | 37.037 | 0.00 | 0.00 | 30.83 | 0.98 |
3802 | 8168 | 6.672657 | ACATGGTACTCCCTCTGTAAACTAAT | 59.327 | 38.462 | 0.00 | 0.00 | 30.83 | 1.73 |
3803 | 8169 | 6.021030 | ACATGGTACTCCCTCTGTAAACTAA | 58.979 | 40.000 | 0.00 | 0.00 | 30.83 | 2.24 |
3804 | 8170 | 5.586877 | ACATGGTACTCCCTCTGTAAACTA | 58.413 | 41.667 | 0.00 | 0.00 | 30.83 | 2.24 |
3805 | 8171 | 4.426704 | ACATGGTACTCCCTCTGTAAACT | 58.573 | 43.478 | 0.00 | 0.00 | 30.83 | 2.66 |
3806 | 8172 | 4.820894 | ACATGGTACTCCCTCTGTAAAC | 57.179 | 45.455 | 0.00 | 0.00 | 30.83 | 2.01 |
3807 | 8173 | 4.960469 | CCTACATGGTACTCCCTCTGTAAA | 59.040 | 45.833 | 0.00 | 0.00 | 34.06 | 2.01 |
3808 | 8174 | 4.231195 | TCCTACATGGTACTCCCTCTGTAA | 59.769 | 45.833 | 0.00 | 0.00 | 34.06 | 2.41 |
3809 | 8175 | 3.789840 | TCCTACATGGTACTCCCTCTGTA | 59.210 | 47.826 | 0.00 | 0.00 | 37.07 | 2.74 |
3810 | 8176 | 2.585900 | TCCTACATGGTACTCCCTCTGT | 59.414 | 50.000 | 0.00 | 0.00 | 37.07 | 3.41 |
3811 | 8177 | 3.314307 | TCCTACATGGTACTCCCTCTG | 57.686 | 52.381 | 0.00 | 0.00 | 37.07 | 3.35 |
3812 | 8178 | 3.181416 | GGATCCTACATGGTACTCCCTCT | 60.181 | 52.174 | 3.84 | 0.00 | 37.07 | 3.69 |
3813 | 8179 | 3.166679 | GGATCCTACATGGTACTCCCTC | 58.833 | 54.545 | 3.84 | 0.00 | 37.07 | 4.30 |
3814 | 8180 | 2.798368 | AGGATCCTACATGGTACTCCCT | 59.202 | 50.000 | 14.27 | 0.00 | 37.07 | 4.20 |
3815 | 8181 | 2.900546 | CAGGATCCTACATGGTACTCCC | 59.099 | 54.545 | 15.67 | 0.00 | 37.07 | 4.30 |
3816 | 8182 | 3.845860 | TCAGGATCCTACATGGTACTCC | 58.154 | 50.000 | 15.67 | 0.00 | 37.07 | 3.85 |
3817 | 8183 | 5.788450 | CAATCAGGATCCTACATGGTACTC | 58.212 | 45.833 | 15.67 | 0.00 | 37.07 | 2.59 |
3818 | 8184 | 4.040952 | GCAATCAGGATCCTACATGGTACT | 59.959 | 45.833 | 15.67 | 0.00 | 37.07 | 2.73 |
3819 | 8185 | 4.040952 | AGCAATCAGGATCCTACATGGTAC | 59.959 | 45.833 | 15.67 | 0.00 | 37.07 | 3.34 |
3820 | 8186 | 4.040829 | CAGCAATCAGGATCCTACATGGTA | 59.959 | 45.833 | 15.67 | 0.00 | 37.07 | 3.25 |
4194 | 8977 | 5.848036 | CGCACACTGAAGAAACATAAGAAAG | 59.152 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
4317 | 9100 | 1.752501 | CGACGCAACGGGAATAGCTG | 61.753 | 60.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4329 | 9112 | 3.953444 | CTGCTCGAGCTCGACGCAA | 62.953 | 63.158 | 37.93 | 28.66 | 44.81 | 4.85 |
4403 | 9186 | 0.679505 | TTTCTGCTGGTAGCTGACGT | 59.320 | 50.000 | 9.47 | 0.00 | 46.52 | 4.34 |
4408 | 9191 | 2.354604 | GCTTCTCTTTCTGCTGGTAGCT | 60.355 | 50.000 | 2.24 | 0.00 | 42.97 | 3.32 |
4743 | 9526 | 0.893270 | CATCGGTTTTCCCACCAGCA | 60.893 | 55.000 | 0.00 | 0.00 | 36.49 | 4.41 |
4968 | 9770 | 2.484264 | GTCATTGACAGTGGTGTTAGCC | 59.516 | 50.000 | 11.93 | 0.00 | 36.88 | 3.93 |
5140 | 9985 | 9.809096 | AGTTACATGAGATACATAACAAGACAG | 57.191 | 33.333 | 0.00 | 0.00 | 37.46 | 3.51 |
5409 | 10284 | 6.724441 | AGATTTCCCTTCCCTTTTTCGTTAAT | 59.276 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
5472 | 10347 | 2.361070 | GGAGGATAACCCCCAACCTCTA | 60.361 | 54.545 | 0.00 | 0.00 | 44.32 | 2.43 |
5478 | 10353 | 3.403051 | TCAAAAAGGAGGATAACCCCCAA | 59.597 | 43.478 | 0.00 | 0.00 | 36.73 | 4.12 |
5514 | 10396 | 3.002553 | GGTGCTGCAAAAATTTGTTGGAG | 59.997 | 43.478 | 14.61 | 14.61 | 44.60 | 3.86 |
5648 | 10533 | 8.757982 | AGGTTGGAGTTACGATAACTTCTATA | 57.242 | 34.615 | 13.73 | 2.40 | 0.00 | 1.31 |
5649 | 10534 | 7.341256 | TGAGGTTGGAGTTACGATAACTTCTAT | 59.659 | 37.037 | 13.73 | 2.60 | 31.25 | 1.98 |
5710 | 10659 | 5.548056 | AGACAAGAATTTTAGGACAGAGGGA | 59.452 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
5711 | 10660 | 5.810095 | AGACAAGAATTTTAGGACAGAGGG | 58.190 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
5712 | 10661 | 8.314751 | TCTAAGACAAGAATTTTAGGACAGAGG | 58.685 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
5713 | 10662 | 9.883142 | ATCTAAGACAAGAATTTTAGGACAGAG | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
5716 | 10665 | 9.151471 | CGAATCTAAGACAAGAATTTTAGGACA | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
5717 | 10666 | 9.152595 | ACGAATCTAAGACAAGAATTTTAGGAC | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
5718 | 10667 | 9.367444 | GACGAATCTAAGACAAGAATTTTAGGA | 57.633 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
5727 | 10676 | 9.004717 | CCATATCTAGACGAATCTAAGACAAGA | 57.995 | 37.037 | 0.00 | 0.00 | 36.98 | 3.02 |
5728 | 10677 | 9.004717 | TCCATATCTAGACGAATCTAAGACAAG | 57.995 | 37.037 | 0.00 | 0.00 | 36.98 | 3.16 |
5729 | 10678 | 8.919777 | TCCATATCTAGACGAATCTAAGACAA | 57.080 | 34.615 | 0.00 | 0.00 | 36.98 | 3.18 |
5730 | 10679 | 8.951243 | CATCCATATCTAGACGAATCTAAGACA | 58.049 | 37.037 | 0.00 | 0.00 | 36.98 | 3.41 |
5731 | 10680 | 8.952278 | ACATCCATATCTAGACGAATCTAAGAC | 58.048 | 37.037 | 0.00 | 0.00 | 36.98 | 3.01 |
5771 | 10720 | 8.408601 | CCCAAAAATCTTGTCTTAGATACATGG | 58.591 | 37.037 | 0.00 | 0.00 | 33.81 | 3.66 |
5772 | 10721 | 9.177608 | TCCCAAAAATCTTGTCTTAGATACATG | 57.822 | 33.333 | 0.00 | 0.00 | 33.81 | 3.21 |
5773 | 10722 | 9.178758 | GTCCCAAAAATCTTGTCTTAGATACAT | 57.821 | 33.333 | 0.00 | 0.00 | 33.81 | 2.29 |
5774 | 10723 | 7.333423 | CGTCCCAAAAATCTTGTCTTAGATACA | 59.667 | 37.037 | 0.00 | 0.00 | 33.81 | 2.29 |
5776 | 10725 | 6.821665 | CCGTCCCAAAAATCTTGTCTTAGATA | 59.178 | 38.462 | 0.00 | 0.00 | 33.81 | 1.98 |
5777 | 10726 | 5.648092 | CCGTCCCAAAAATCTTGTCTTAGAT | 59.352 | 40.000 | 0.00 | 0.00 | 36.44 | 1.98 |
5778 | 10727 | 5.001232 | CCGTCCCAAAAATCTTGTCTTAGA | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
5779 | 10728 | 5.001232 | TCCGTCCCAAAAATCTTGTCTTAG | 58.999 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
5781 | 10730 | 3.821033 | CTCCGTCCCAAAAATCTTGTCTT | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
5782 | 10731 | 3.412386 | CTCCGTCCCAAAAATCTTGTCT | 58.588 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
5783 | 10732 | 2.488153 | CCTCCGTCCCAAAAATCTTGTC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5784 | 10733 | 2.514803 | CCTCCGTCCCAAAAATCTTGT | 58.485 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
5785 | 10734 | 1.818674 | CCCTCCGTCCCAAAAATCTTG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
5787 | 10736 | 1.282157 | CTCCCTCCGTCCCAAAAATCT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
5788 | 10737 | 1.004394 | ACTCCCTCCGTCCCAAAAATC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
5789 | 10738 | 1.073098 | ACTCCCTCCGTCCCAAAAAT | 58.927 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
5790 | 10739 | 1.348696 | GTACTCCCTCCGTCCCAAAAA | 59.651 | 52.381 | 0.00 | 0.00 | 0.00 | 1.94 |
5791 | 10740 | 0.978907 | GTACTCCCTCCGTCCCAAAA | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5793 | 10742 | 0.178926 | TTGTACTCCCTCCGTCCCAA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
5794 | 10743 | 0.178926 | TTTGTACTCCCTCCGTCCCA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
5795 | 10744 | 0.978907 | TTTTGTACTCCCTCCGTCCC | 59.021 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
5796 | 10745 | 3.740452 | GCTATTTTGTACTCCCTCCGTCC | 60.740 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
5797 | 10746 | 3.132467 | AGCTATTTTGTACTCCCTCCGTC | 59.868 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
5798 | 10747 | 3.105283 | AGCTATTTTGTACTCCCTCCGT | 58.895 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
5799 | 10748 | 3.821421 | AGCTATTTTGTACTCCCTCCG | 57.179 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
5800 | 10749 | 4.120589 | CGAAGCTATTTTGTACTCCCTCC | 58.879 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
5803 | 10752 | 4.133013 | TCCGAAGCTATTTTGTACTCCC | 57.867 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
5804 | 10753 | 5.116882 | ACATCCGAAGCTATTTTGTACTCC | 58.883 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
5805 | 10754 | 6.979238 | AGTACATCCGAAGCTATTTTGTACTC | 59.021 | 38.462 | 17.07 | 0.00 | 42.61 | 2.59 |
5806 | 10755 | 6.757010 | CAGTACATCCGAAGCTATTTTGTACT | 59.243 | 38.462 | 17.07 | 17.07 | 45.38 | 2.73 |
5807 | 10756 | 6.755141 | TCAGTACATCCGAAGCTATTTTGTAC | 59.245 | 38.462 | 14.30 | 14.30 | 38.65 | 2.90 |
5808 | 10757 | 6.869695 | TCAGTACATCCGAAGCTATTTTGTA | 58.130 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5809 | 10758 | 5.730550 | TCAGTACATCCGAAGCTATTTTGT | 58.269 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
5810 | 10759 | 6.851222 | ATCAGTACATCCGAAGCTATTTTG | 57.149 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
5822 | 10771 | 4.142600 | GCACTTCCACAAATCAGTACATCC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.