Multiple sequence alignment - TraesCS3D01G015600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G015600 chr3D 100.000 5921 0 0 1 5921 5606792 5600872 0.000000e+00 10935.0
1 TraesCS3D01G015600 chr3D 86.777 121 11 3 2232 2350 5727933 5728050 4.820000e-26 130.0
2 TraesCS3D01G015600 chr3D 80.357 168 32 1 3110 3277 5727935 5728101 6.230000e-25 126.0
3 TraesCS3D01G015600 chr3D 89.247 93 5 5 5684 5771 391575028 391574936 1.740000e-20 111.0
4 TraesCS3D01G015600 chr3D 95.652 69 3 0 5708 5776 537720906 537720838 1.740000e-20 111.0
5 TraesCS3D01G015600 chr3D 100.000 34 0 0 2089 2122 460727932 460727899 4.950000e-06 63.9
6 TraesCS3D01G015600 chr3A 94.554 1726 64 8 3935 5648 15787330 15789037 0.000000e+00 2639.0
7 TraesCS3D01G015600 chr3A 94.746 1637 58 5 1669 3278 15785017 15786652 0.000000e+00 2521.0
8 TraesCS3D01G015600 chr3A 86.104 770 57 23 870 1618 15783953 15784693 0.000000e+00 784.0
9 TraesCS3D01G015600 chr3A 91.259 572 47 3 1966 2536 17259920 17260489 0.000000e+00 776.0
10 TraesCS3D01G015600 chr3A 90.283 494 32 10 2788 3276 17260886 17261368 3.010000e-177 632.0
11 TraesCS3D01G015600 chr3A 93.909 394 24 0 1681 2074 180050379 180049986 3.950000e-166 595.0
12 TraesCS3D01G015600 chr3A 94.026 385 12 4 3357 3740 15786793 15787167 1.850000e-159 573.0
13 TraesCS3D01G015600 chr3A 92.674 273 15 3 3378 3647 17261668 17261938 7.200000e-104 388.0
14 TraesCS3D01G015600 chr3A 87.108 287 26 7 1327 1612 17259626 17259902 1.240000e-81 315.0
15 TraesCS3D01G015600 chr3A 84.259 324 31 12 1136 1452 697163580 697163270 1.250000e-76 298.0
16 TraesCS3D01G015600 chr3A 91.038 212 17 1 2529 2740 17260540 17260749 9.710000e-73 285.0
17 TraesCS3D01G015600 chr3A 88.034 234 14 6 4214 4434 15820142 15820374 1.270000e-66 265.0
18 TraesCS3D01G015600 chr3A 92.857 182 11 2 2533 2714 180049828 180049649 4.550000e-66 263.0
19 TraesCS3D01G015600 chr3A 83.721 258 36 5 135 390 17259205 17259458 7.670000e-59 239.0
20 TraesCS3D01G015600 chr3A 99.153 118 1 0 3820 3937 15787164 15787281 4.650000e-51 213.0
21 TraesCS3D01G015600 chr3A 93.069 101 6 1 2436 2536 180049982 180049883 4.780000e-31 147.0
22 TraesCS3D01G015600 chr3A 92.157 102 6 2 3728 3828 725517068 725517168 6.190000e-30 143.0
23 TraesCS3D01G015600 chr3B 93.750 1520 74 15 4144 5648 28104621 28106134 0.000000e+00 2261.0
24 TraesCS3D01G015600 chr3B 86.068 1493 97 39 1 1453 28101598 28103019 0.000000e+00 1502.0
25 TraesCS3D01G015600 chr3B 95.719 911 34 3 4040 4946 12407676 12408585 0.000000e+00 1461.0
26 TraesCS3D01G015600 chr3B 94.240 868 48 2 1669 2536 12405028 12405893 0.000000e+00 1325.0
27 TraesCS3D01G015600 chr3B 87.703 740 48 9 2530 3235 12405945 12406675 0.000000e+00 822.0
28 TraesCS3D01G015600 chr3B 87.165 709 58 13 4528 5235 12419849 12420525 0.000000e+00 774.0
29 TraesCS3D01G015600 chr3B 88.744 613 59 5 4528 5139 28108388 28108991 0.000000e+00 741.0
30 TraesCS3D01G015600 chr3B 84.921 756 45 22 879 1618 12404004 12404706 0.000000e+00 701.0
31 TraesCS3D01G015600 chr3B 90.590 542 27 12 4598 5139 12451390 12451907 0.000000e+00 697.0
32 TraesCS3D01G015600 chr3B 89.687 543 31 12 4597 5139 28130251 28130768 0.000000e+00 669.0
33 TraesCS3D01G015600 chr3B 92.788 416 16 4 5307 5710 12408820 12409233 1.840000e-164 590.0
34 TraesCS3D01G015600 chr3B 96.296 351 10 2 5298 5648 12417204 12417551 1.850000e-159 573.0
35 TraesCS3D01G015600 chr3B 92.765 387 15 4 3357 3740 12406953 12407329 1.120000e-151 547.0
36 TraesCS3D01G015600 chr3B 95.161 310 10 2 4981 5285 12482253 12482562 8.920000e-133 484.0
37 TraesCS3D01G015600 chr3B 87.925 265 20 1 3843 4095 28104345 28104609 9.640000e-78 302.0
38 TraesCS3D01G015600 chr3B 91.244 217 11 2 3820 4035 12407326 12407535 7.510000e-74 289.0
39 TraesCS3D01G015600 chr3B 90.222 225 10 3 1 213 28093508 28093732 3.490000e-72 283.0
40 TraesCS3D01G015600 chr3B 90.222 225 10 3 1 213 28098304 28098528 3.490000e-72 283.0
41 TraesCS3D01G015600 chr3B 86.905 252 24 6 3471 3713 28104081 28104332 2.100000e-69 274.0
42 TraesCS3D01G015600 chr3B 84.064 251 23 9 1669 1918 28103256 28103490 5.970000e-55 226.0
43 TraesCS3D01G015600 chr3B 93.985 133 6 2 5099 5231 12408668 12408798 3.620000e-47 200.0
44 TraesCS3D01G015600 chr3B 95.455 110 5 0 1118 1227 28190205 28190314 6.100000e-40 176.0
45 TraesCS3D01G015600 chr3B 93.220 118 3 2 5809 5921 12409231 12409348 1.020000e-37 169.0
46 TraesCS3D01G015600 chr3B 97.753 89 2 0 4980 5068 12408586 12408674 2.860000e-33 154.0
47 TraesCS3D01G015600 chr3B 85.612 139 15 4 3139 3273 28103774 28103911 2.220000e-29 141.0
48 TraesCS3D01G015600 chr3B 92.391 92 6 1 3194 3285 97360963 97360873 4.820000e-26 130.0
49 TraesCS3D01G015600 chr3B 94.805 77 3 1 3820 3896 789726268 789726343 1.040000e-22 119.0
50 TraesCS3D01G015600 chr3B 80.769 156 19 9 2249 2395 27865136 27864983 1.740000e-20 111.0
51 TraesCS3D01G015600 chr3B 89.888 89 3 4 5689 5771 726607567 726607479 6.270000e-20 110.0
52 TraesCS3D01G015600 chr3B 82.171 129 17 4 3110 3233 28103253 28103380 8.120000e-19 106.0
53 TraesCS3D01G015600 chr3B 92.105 76 5 1 5701 5776 595367137 595367211 8.120000e-19 106.0
54 TraesCS3D01G015600 chrUn 96.178 811 22 5 4144 4946 35885455 35884646 0.000000e+00 1317.0
55 TraesCS3D01G015600 chrUn 93.710 620 24 9 5099 5710 35884563 35883951 0.000000e+00 915.0
56 TraesCS3D01G015600 chrUn 92.308 455 33 2 1 454 35454719 35455172 0.000000e+00 645.0
57 TraesCS3D01G015600 chrUn 88.588 517 26 7 892 1401 35888102 35887612 1.100000e-166 597.0
58 TraesCS3D01G015600 chrUn 91.638 287 20 2 4514 4797 35739156 35738871 1.550000e-105 394.0
59 TraesCS3D01G015600 chrUn 90.222 225 10 3 1 213 344946511 344946735 3.490000e-72 283.0
60 TraesCS3D01G015600 chrUn 94.017 117 3 2 5809 5921 35883953 35883837 2.190000e-39 174.0
61 TraesCS3D01G015600 chrUn 98.876 89 1 0 4980 5068 35884645 35884557 6.140000e-35 159.0
62 TraesCS3D01G015600 chrUn 91.228 114 9 1 3935 4048 35885799 35885687 2.860000e-33 154.0
63 TraesCS3D01G015600 chrUn 88.889 90 8 2 3139 3227 35886608 35886520 6.270000e-20 110.0
64 TraesCS3D01G015600 chr5B 92.269 401 22 8 2884 3276 49971931 49972330 1.440000e-155 560.0
65 TraesCS3D01G015600 chr5B 87.555 458 46 6 1957 2410 61801129 61800679 2.450000e-143 520.0
66 TraesCS3D01G015600 chr5B 91.451 386 17 9 3360 3740 124879199 124878825 3.160000e-142 516.0
67 TraesCS3D01G015600 chr5B 91.003 389 19 9 3357 3740 705370391 705370768 1.470000e-140 510.0
68 TraesCS3D01G015600 chr5B 90.966 321 13 7 3425 3740 427835597 427835288 9.180000e-113 418.0
69 TraesCS3D01G015600 chr5B 90.190 316 20 7 3357 3670 145510340 145510646 9.240000e-108 401.0
70 TraesCS3D01G015600 chr5B 90.459 283 26 1 2129 2410 62305919 62306201 7.250000e-99 372.0
71 TraesCS3D01G015600 chr5B 81.591 440 46 18 1170 1595 711381881 711382299 1.230000e-86 331.0
72 TraesCS3D01G015600 chr5B 100.000 34 0 0 5778 5811 133053472 133053439 4.950000e-06 63.9
73 TraesCS3D01G015600 chr5B 100.000 34 0 0 5778 5811 339024720 339024753 4.950000e-06 63.9
74 TraesCS3D01G015600 chr2B 91.710 386 22 6 3357 3740 76529203 76529580 1.460000e-145 527.0
75 TraesCS3D01G015600 chr2B 96.875 96 2 1 3730 3824 799071224 799071319 6.140000e-35 159.0
76 TraesCS3D01G015600 chr2B 91.489 94 7 1 3183 3276 429839269 429839361 1.730000e-25 128.0
77 TraesCS3D01G015600 chr2B 91.304 46 4 0 5781 5826 24264145 24264100 4.950000e-06 63.9
78 TraesCS3D01G015600 chr7B 91.304 391 23 7 3352 3740 116770482 116770863 1.890000e-144 523.0
79 TraesCS3D01G015600 chr7B 92.391 92 6 1 3185 3276 76371683 76371773 4.820000e-26 130.0
80 TraesCS3D01G015600 chr7B 86.486 111 5 9 5708 5810 191178899 191179007 4.850000e-21 113.0
81 TraesCS3D01G015600 chr7B 100.000 43 0 0 1149 1191 472332608 472332650 4.920000e-11 80.5
82 TraesCS3D01G015600 chr7B 100.000 43 0 0 1149 1191 472398089 472398131 4.920000e-11 80.5
83 TraesCS3D01G015600 chr7B 100.000 31 0 0 2092 2122 544627571 544627541 2.300000e-04 58.4
84 TraesCS3D01G015600 chr1A 91.645 383 22 6 3360 3740 50565909 50565535 6.800000e-144 521.0
85 TraesCS3D01G015600 chr1A 90.537 391 26 7 3352 3740 370269883 370270264 1.900000e-139 507.0
86 TraesCS3D01G015600 chr1A 83.032 442 40 19 1168 1595 26547239 26546819 9.370000e-98 368.0
87 TraesCS3D01G015600 chr1A 94.340 159 7 2 2884 3041 17536340 17536497 5.930000e-60 243.0
88 TraesCS3D01G015600 chr1A 92.857 154 5 6 3592 3740 41859768 41859616 9.990000e-53 219.0
89 TraesCS3D01G015600 chr1A 95.556 90 4 0 3737 3826 14531210 14531121 1.720000e-30 145.0
90 TraesCS3D01G015600 chr1A 97.143 70 2 0 3820 3889 17537089 17537158 1.040000e-22 119.0
91 TraesCS3D01G015600 chr1A 94.737 76 4 0 3820 3895 41859619 41859544 1.040000e-22 119.0
92 TraesCS3D01G015600 chr1A 94.737 76 4 0 3820 3895 50565538 50565463 1.040000e-22 119.0
93 TraesCS3D01G015600 chr1A 97.143 70 2 0 3820 3889 370270261 370270330 1.040000e-22 119.0
94 TraesCS3D01G015600 chr1A 94.737 76 4 0 3820 3895 422003780 422003705 1.040000e-22 119.0
95 TraesCS3D01G015600 chr4B 91.003 389 19 9 3357 3740 338888637 338889014 1.470000e-140 510.0
96 TraesCS3D01G015600 chr4B 94.340 159 7 2 2884 3041 62263303 62263146 5.930000e-60 243.0
97 TraesCS3D01G015600 chr4B 94.340 159 7 2 2884 3041 424790950 424790793 5.930000e-60 243.0
98 TraesCS3D01G015600 chr4B 95.775 71 3 0 5706 5776 619027002 619027072 1.350000e-21 115.0
99 TraesCS3D01G015600 chr6B 92.711 343 25 0 1732 2074 272817182 272816840 4.120000e-136 496.0
100 TraesCS3D01G015600 chr6B 91.209 182 14 2 2533 2714 272816682 272816503 4.580000e-61 246.0
101 TraesCS3D01G015600 chr6B 93.069 101 6 1 2436 2536 272816836 272816737 4.780000e-31 147.0
102 TraesCS3D01G015600 chr6B 91.262 103 7 2 3727 3829 252820849 252820949 8.000000e-29 139.0
103 TraesCS3D01G015600 chr6B 81.679 131 21 2 2249 2378 694874411 694874283 8.120000e-19 106.0
104 TraesCS3D01G015600 chr6A 90.735 313 19 6 3360 3670 576295527 576295223 5.520000e-110 409.0
105 TraesCS3D01G015600 chr6A 94.340 159 7 2 2884 3041 327805862 327806019 5.930000e-60 243.0
106 TraesCS3D01G015600 chr6A 94.340 159 7 2 2884 3041 576295906 576295749 5.930000e-60 243.0
107 TraesCS3D01G015600 chr6A 93.204 103 6 1 3729 3830 593927256 593927358 3.700000e-32 150.0
108 TraesCS3D01G015600 chr1D 96.739 92 3 0 3732 3823 494560273 494560364 2.860000e-33 154.0
109 TraesCS3D01G015600 chr1D 97.500 40 1 0 5778 5817 238533792 238533753 1.060000e-07 69.4
110 TraesCS3D01G015600 chr2A 95.652 92 4 0 3731 3822 195110211 195110302 1.330000e-31 148.0
111 TraesCS3D01G015600 chr2A 95.349 86 4 0 3738 3823 384337727 384337812 2.880000e-28 137.0
112 TraesCS3D01G015600 chr1B 95.652 92 4 0 3731 3822 154145340 154145431 1.330000e-31 148.0
113 TraesCS3D01G015600 chr1B 92.208 77 4 2 5707 5783 510360084 510360010 2.260000e-19 108.0
114 TraesCS3D01G015600 chr7A 92.157 102 6 2 2436 2536 649713949 649713849 6.190000e-30 143.0
115 TraesCS3D01G015600 chr7A 93.182 88 6 0 3194 3281 597542246 597542159 4.820000e-26 130.0
116 TraesCS3D01G015600 chr7D 95.714 70 3 0 5707 5776 447766701 447766770 4.850000e-21 113.0
117 TraesCS3D01G015600 chr7D 89.474 57 4 2 5458 5514 43166706 43166652 2.960000e-08 71.3
118 TraesCS3D01G015600 chr4A 98.438 64 1 0 5708 5771 545601280 545601217 4.850000e-21 113.0
119 TraesCS3D01G015600 chr4A 100.000 43 0 0 2080 2122 551402983 551402941 4.920000e-11 80.5
120 TraesCS3D01G015600 chr5A 100.000 43 0 0 2080 2122 195256252 195256294 4.920000e-11 80.5
121 TraesCS3D01G015600 chr5A 100.000 34 0 0 5778 5811 338578092 338578125 4.950000e-06 63.9
122 TraesCS3D01G015600 chr4D 97.674 43 1 0 2080 2122 447206300 447206342 2.290000e-09 75.0
123 TraesCS3D01G015600 chr5D 100.000 39 0 0 5778 5816 44119013 44119051 8.230000e-09 73.1
124 TraesCS3D01G015600 chr5D 100.000 34 0 0 5778 5811 463288600 463288567 4.950000e-06 63.9
125 TraesCS3D01G015600 chr2D 100.000 35 0 0 5778 5812 624555638 624555672 1.380000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G015600 chr3D 5600872 5606792 5920 True 10935.000000 10935 100.000000 1 5921 1 chr3D.!!$R1 5920
1 TraesCS3D01G015600 chr3A 15783953 15789037 5084 False 1346.000000 2639 93.716600 870 5648 5 chr3A.!!$F3 4778
2 TraesCS3D01G015600 chr3A 17259205 17261938 2733 False 439.166667 776 89.347167 135 3647 6 chr3A.!!$F4 3512
3 TraesCS3D01G015600 chr3A 180049649 180050379 730 True 335.000000 595 93.278333 1681 2714 3 chr3A.!!$R2 1033
4 TraesCS3D01G015600 chr3B 12451390 12451907 517 False 697.000000 697 90.590000 4598 5139 1 chr3B.!!$F1 541
5 TraesCS3D01G015600 chr3B 12417204 12420525 3321 False 673.500000 774 91.730500 4528 5648 2 chr3B.!!$F9 1120
6 TraesCS3D01G015600 chr3B 28130251 28130768 517 False 669.000000 669 89.687000 4597 5139 1 chr3B.!!$F4 542
7 TraesCS3D01G015600 chr3B 28098304 28108991 10687 False 648.444444 2261 87.273444 1 5648 9 chr3B.!!$F10 5647
8 TraesCS3D01G015600 chr3B 12404004 12409348 5344 False 625.800000 1461 92.433800 879 5921 10 chr3B.!!$F8 5042
9 TraesCS3D01G015600 chrUn 35883837 35888102 4265 True 489.428571 1317 93.069429 892 5921 7 chrUn.!!$R2 5029
10 TraesCS3D01G015600 chr6B 272816503 272817182 679 True 296.333333 496 92.329667 1732 2714 3 chr6B.!!$R2 982
11 TraesCS3D01G015600 chr6A 576295223 576295906 683 True 326.000000 409 92.537500 2884 3670 2 chr6A.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.037017 TAGGGTTAAGCGGCTTTGCA 59.963 50.0 21.72 0.0 37.31 4.08 F
294 3601 0.666577 CGACCCTCGTTCGCTTTTCT 60.667 55.0 0.00 0.0 34.72 2.52 F
1394 4788 0.994247 ATGCCAGTGGAGTGGATTGA 59.006 50.0 15.20 0.0 40.44 2.57 F
2152 5859 0.107456 AGAGGCATAATGACAGCGGG 59.893 55.0 0.00 0.0 0.00 6.13 F
2952 6944 0.037605 GGGTCTTGATCGGTCGTGTT 60.038 55.0 0.00 0.0 0.00 3.32 F
4317 9100 1.843992 CTCTGTGTTGCAAAAGCACC 58.156 50.0 14.11 0.0 32.62 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 5193 0.451783 CCTACAAGGCGGCATTTGTC 59.548 55.000 17.97 0.0 38.41 3.18 R
1638 5336 0.682292 TGGTCCACTGACATTACGCA 59.318 50.000 0.00 0.0 43.65 5.24 R
2379 6130 1.066573 CCCTGTTCAGCTTCGAGACAT 60.067 52.381 0.00 0.0 0.00 3.06 R
3139 7193 1.140816 GCTTCGAGACACCAACAGTC 58.859 55.000 0.00 0.0 36.26 3.51 R
4403 9186 0.679505 TTTCTGCTGGTAGCTGACGT 59.320 50.000 9.47 0.0 46.52 4.34 R
5793 10742 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 8.716646 ATGACACATGTATGATTAAACTTCGA 57.283 30.769 0.00 0.00 0.00 3.71
108 109 2.904866 TGCAACGTGAACCAGGCC 60.905 61.111 0.00 0.00 0.00 5.19
135 136 2.396590 TCTAGGGTTAAGCGGCTTTG 57.603 50.000 21.72 0.00 0.00 2.77
136 137 0.733150 CTAGGGTTAAGCGGCTTTGC 59.267 55.000 21.72 13.34 0.00 3.68
137 138 0.037017 TAGGGTTAAGCGGCTTTGCA 59.963 50.000 21.72 0.00 37.31 4.08
138 139 1.080772 GGGTTAAGCGGCTTTGCAC 60.081 57.895 21.72 14.46 37.31 4.57
139 140 1.524008 GGGTTAAGCGGCTTTGCACT 61.524 55.000 21.72 0.00 37.31 4.40
148 161 1.131126 CGGCTTTGCACTAAGATGTGG 59.869 52.381 2.23 0.00 38.31 4.17
235 3542 1.580059 TTAGCCGGAAGAAGTGGGAT 58.420 50.000 5.05 0.00 0.00 3.85
247 3554 4.079253 AGAAGTGGGATTTAACGCAATGT 58.921 39.130 0.00 0.00 34.73 2.71
294 3601 0.666577 CGACCCTCGTTCGCTTTTCT 60.667 55.000 0.00 0.00 34.72 2.52
321 3628 2.560981 TGGTTCAGCTAGACGTCAATCA 59.439 45.455 19.50 5.60 0.00 2.57
355 3663 6.590234 AATTTGGGTAAGTCCATTTCTGTC 57.410 37.500 0.00 0.00 36.58 3.51
372 3680 2.246874 TCGGGAAGGGAGGAGGAGT 61.247 63.158 0.00 0.00 0.00 3.85
395 3703 1.517361 CAGAGCACCTACATCGCCA 59.483 57.895 0.00 0.00 0.00 5.69
454 3776 5.514274 CAACAACATTGGTGTTCTTAGGT 57.486 39.130 17.03 0.00 45.14 3.08
459 3781 1.145571 TTGGTGTTCTTAGGTGGGCT 58.854 50.000 0.00 0.00 0.00 5.19
521 3843 1.800586 GGTTCGTCGGTTTAAAGGGAC 59.199 52.381 8.01 8.01 0.00 4.46
523 3845 2.448477 CGTCGGTTTAAAGGGACGG 58.552 57.895 23.35 11.61 46.08 4.79
565 3887 1.810606 CGATGGAGGATGGTCGAGGG 61.811 65.000 0.00 0.00 36.25 4.30
594 3916 3.948719 GGTGAGGCGGTTGTGGGA 61.949 66.667 0.00 0.00 0.00 4.37
595 3917 2.358737 GTGAGGCGGTTGTGGGAG 60.359 66.667 0.00 0.00 0.00 4.30
596 3918 2.847234 TGAGGCGGTTGTGGGAGT 60.847 61.111 0.00 0.00 0.00 3.85
597 3919 2.358737 GAGGCGGTTGTGGGAGTG 60.359 66.667 0.00 0.00 0.00 3.51
598 3920 4.643387 AGGCGGTTGTGGGAGTGC 62.643 66.667 0.00 0.00 0.00 4.40
600 3922 4.947147 GCGGTTGTGGGAGTGCCA 62.947 66.667 0.00 0.00 35.15 4.92
601 3923 2.978010 CGGTTGTGGGAGTGCCAC 60.978 66.667 25.82 25.82 38.52 5.01
602 3924 2.597510 GGTTGTGGGAGTGCCACC 60.598 66.667 28.76 15.42 37.38 4.61
603 3925 2.978010 GTTGTGGGAGTGCCACCG 60.978 66.667 28.76 0.00 37.38 4.94
604 3926 3.164977 TTGTGGGAGTGCCACCGA 61.165 61.111 28.76 15.96 37.38 4.69
605 3927 3.469863 TTGTGGGAGTGCCACCGAC 62.470 63.158 28.76 6.71 37.38 4.79
606 3928 4.699522 GTGGGAGTGCCACCGACC 62.700 72.222 22.55 0.00 35.15 4.79
637 3959 2.046314 GCAAGCGGTTAGGCCTGA 60.046 61.111 17.99 3.42 34.25 3.86
648 3970 2.298335 TAGGCCTGAGCTGGATCGGA 62.298 60.000 17.99 0.00 39.73 4.55
653 3975 3.219928 GAGCTGGATCGGAGGCGA 61.220 66.667 0.00 0.00 0.00 5.54
672 3994 5.765182 AGGCGATGAGAAGAAAAAGAGAAAA 59.235 36.000 0.00 0.00 0.00 2.29
703 4025 6.906157 ACCAGTTTGATGTTGAAGATGAAT 57.094 33.333 0.00 0.00 0.00 2.57
707 4029 6.522165 CAGTTTGATGTTGAAGATGAATCACG 59.478 38.462 0.00 0.00 0.00 4.35
721 4043 1.959042 ATCACGCTGTCCATTGGATC 58.041 50.000 9.01 3.68 32.73 3.36
728 4050 3.548770 GCTGTCCATTGGATCTTGATCA 58.451 45.455 9.01 0.00 32.73 2.92
736 4058 9.323484 GTCCATTGGATCTTGATCAAACGGATC 62.323 44.444 20.23 20.23 42.58 3.36
745 4067 4.096732 GATCAAACGGATCCAAAGGTTG 57.903 45.455 13.41 10.89 45.58 3.77
757 4079 3.739401 CAAAGGTTGGGATAAGAGGGT 57.261 47.619 0.00 0.00 0.00 4.34
761 4083 1.920351 GGTTGGGATAAGAGGGTGGAA 59.080 52.381 0.00 0.00 0.00 3.53
765 4087 2.513738 TGGGATAAGAGGGTGGAAATGG 59.486 50.000 0.00 0.00 0.00 3.16
775 4097 2.024941 GGGTGGAAATGGACTGATCCTT 60.025 50.000 0.00 0.00 46.43 3.36
784 4106 4.524316 TGGACTGATCCTTTGCAAAATG 57.476 40.909 13.84 7.63 46.43 2.32
789 4111 6.652062 GGACTGATCCTTTGCAAAATGAATTT 59.348 34.615 13.84 0.00 42.45 1.82
820 4142 1.003118 TGACGCCTAGCCACTCATTTT 59.997 47.619 0.00 0.00 0.00 1.82
822 4144 3.267483 GACGCCTAGCCACTCATTTTTA 58.733 45.455 0.00 0.00 0.00 1.52
829 4151 7.267857 GCCTAGCCACTCATTTTTATTTTCAT 58.732 34.615 0.00 0.00 0.00 2.57
830 4152 7.765819 GCCTAGCCACTCATTTTTATTTTCATT 59.234 33.333 0.00 0.00 0.00 2.57
843 4165 9.781834 TTTTTATTTTCATTACTGGCATCTACG 57.218 29.630 0.00 0.00 0.00 3.51
846 4168 6.417191 TTTTCATTACTGGCATCTACGTTC 57.583 37.500 0.00 0.00 0.00 3.95
847 4169 5.339008 TTCATTACTGGCATCTACGTTCT 57.661 39.130 0.00 0.00 0.00 3.01
848 4170 5.339008 TCATTACTGGCATCTACGTTCTT 57.661 39.130 0.00 0.00 0.00 2.52
849 4171 6.459670 TCATTACTGGCATCTACGTTCTTA 57.540 37.500 0.00 0.00 0.00 2.10
851 4173 8.173542 TCATTACTGGCATCTACGTTCTTATA 57.826 34.615 0.00 0.00 0.00 0.98
852 4174 8.803235 TCATTACTGGCATCTACGTTCTTATAT 58.197 33.333 0.00 0.00 0.00 0.86
853 4175 9.424319 CATTACTGGCATCTACGTTCTTATATT 57.576 33.333 0.00 0.00 0.00 1.28
854 4176 8.812147 TTACTGGCATCTACGTTCTTATATTG 57.188 34.615 0.00 0.00 0.00 1.90
855 4177 6.817184 ACTGGCATCTACGTTCTTATATTGT 58.183 36.000 0.00 0.00 0.00 2.71
856 4178 6.701841 ACTGGCATCTACGTTCTTATATTGTG 59.298 38.462 0.00 0.00 0.00 3.33
857 4179 6.811954 TGGCATCTACGTTCTTATATTGTGA 58.188 36.000 0.00 0.00 0.00 3.58
858 4180 6.923508 TGGCATCTACGTTCTTATATTGTGAG 59.076 38.462 0.00 0.00 0.00 3.51
859 4181 7.145985 GGCATCTACGTTCTTATATTGTGAGA 58.854 38.462 0.00 0.00 0.00 3.27
860 4182 7.327275 GGCATCTACGTTCTTATATTGTGAGAG 59.673 40.741 0.00 0.00 0.00 3.20
861 4183 7.327275 GCATCTACGTTCTTATATTGTGAGAGG 59.673 40.741 0.00 0.00 0.00 3.69
862 4184 7.273320 TCTACGTTCTTATATTGTGAGAGGG 57.727 40.000 0.00 0.00 0.00 4.30
863 4185 7.058525 TCTACGTTCTTATATTGTGAGAGGGA 58.941 38.462 0.00 0.00 0.00 4.20
864 4186 5.903810 ACGTTCTTATATTGTGAGAGGGAC 58.096 41.667 0.00 0.00 0.00 4.46
865 4187 4.976731 CGTTCTTATATTGTGAGAGGGACG 59.023 45.833 0.00 0.00 0.00 4.79
866 4188 5.290386 GTTCTTATATTGTGAGAGGGACGG 58.710 45.833 0.00 0.00 0.00 4.79
867 4189 4.800023 TCTTATATTGTGAGAGGGACGGA 58.200 43.478 0.00 0.00 0.00 4.69
868 4190 4.827835 TCTTATATTGTGAGAGGGACGGAG 59.172 45.833 0.00 0.00 0.00 4.63
884 4206 1.156645 GGAGTATCTTGCAGCCAGCG 61.157 60.000 0.00 0.00 40.52 5.18
952 4279 2.451493 TTCCCCTTCCCTGCCACA 60.451 61.111 0.00 0.00 0.00 4.17
1140 4492 4.629200 GTCAAGATACAGTCCAAAGCTCTG 59.371 45.833 0.00 0.00 35.60 3.35
1266 4638 1.067213 GGTTCCTGAGAGCAGAGTGTC 60.067 57.143 0.00 0.00 45.17 3.67
1277 4650 2.093606 AGCAGAGTGTCCATCAGATGTG 60.094 50.000 9.64 0.57 0.00 3.21
1278 4651 2.902523 CAGAGTGTCCATCAGATGTGG 58.097 52.381 9.64 0.00 38.11 4.17
1279 4652 2.498885 CAGAGTGTCCATCAGATGTGGA 59.501 50.000 9.64 0.00 43.26 4.02
1394 4788 0.994247 ATGCCAGTGGAGTGGATTGA 59.006 50.000 15.20 0.00 40.44 2.57
1402 4797 4.703575 CAGTGGAGTGGATTGACATTTCAT 59.296 41.667 0.00 0.00 0.00 2.57
1403 4798 5.184479 CAGTGGAGTGGATTGACATTTCATT 59.816 40.000 0.00 0.00 0.00 2.57
1404 4799 5.776716 AGTGGAGTGGATTGACATTTCATTT 59.223 36.000 0.00 0.00 0.00 2.32
1405 4800 6.268387 AGTGGAGTGGATTGACATTTCATTTT 59.732 34.615 0.00 0.00 0.00 1.82
1406 4801 6.587608 GTGGAGTGGATTGACATTTCATTTTC 59.412 38.462 0.00 0.00 0.00 2.29
1407 4802 6.267242 TGGAGTGGATTGACATTTCATTTTCA 59.733 34.615 0.00 0.00 0.00 2.69
1456 4852 4.819088 GTCTGCTCCTCAAGGGAAAATATC 59.181 45.833 0.00 0.00 44.58 1.63
1499 5193 2.636830 CTGCTGTTCTTGGTAGGATGG 58.363 52.381 0.00 0.00 0.00 3.51
1542 5236 3.317711 TCTTGATTGGTTGCGTGTGAAAT 59.682 39.130 0.00 0.00 0.00 2.17
1566 5264 7.373617 TCTGAATATGTAGCATTTAGGACCA 57.626 36.000 0.00 0.00 0.00 4.02
1591 5289 5.755861 GGTTTCCAATCTAGTCTGTATCTGC 59.244 44.000 0.00 0.00 0.00 4.26
1599 5297 5.126779 TCTAGTCTGTATCTGCAGTAGTGG 58.873 45.833 14.67 3.19 37.70 4.00
1627 5325 4.237349 AGTTTAGCACATTTTGGTTCCG 57.763 40.909 0.00 0.00 37.13 4.30
1628 5326 3.886505 AGTTTAGCACATTTTGGTTCCGA 59.113 39.130 0.00 0.00 37.13 4.55
1629 5327 4.339814 AGTTTAGCACATTTTGGTTCCGAA 59.660 37.500 0.00 0.00 37.13 4.30
1630 5328 4.920640 TTAGCACATTTTGGTTCCGAAA 57.079 36.364 6.70 6.70 37.13 3.46
1631 5329 5.461032 TTAGCACATTTTGGTTCCGAAAT 57.539 34.783 10.34 10.34 37.13 2.17
1632 5330 4.335400 AGCACATTTTGGTTCCGAAATT 57.665 36.364 12.77 4.64 28.85 1.82
1633 5331 4.702831 AGCACATTTTGGTTCCGAAATTT 58.297 34.783 12.77 6.00 28.85 1.82
1634 5332 5.848406 AGCACATTTTGGTTCCGAAATTTA 58.152 33.333 12.77 0.00 28.85 1.40
1635 5333 5.925969 AGCACATTTTGGTTCCGAAATTTAG 59.074 36.000 12.77 6.58 28.85 1.85
1636 5334 5.120053 GCACATTTTGGTTCCGAAATTTAGG 59.880 40.000 10.86 10.86 30.16 2.69
1637 5335 6.451393 CACATTTTGGTTCCGAAATTTAGGA 58.549 36.000 15.28 15.28 30.16 2.94
1638 5336 7.096551 CACATTTTGGTTCCGAAATTTAGGAT 58.903 34.615 19.22 1.68 36.28 3.24
1639 5337 7.063308 CACATTTTGGTTCCGAAATTTAGGATG 59.937 37.037 19.22 14.68 36.28 3.51
1640 5338 4.712122 TTGGTTCCGAAATTTAGGATGC 57.288 40.909 19.22 14.73 36.28 3.91
1641 5339 2.680841 TGGTTCCGAAATTTAGGATGCG 59.319 45.455 19.22 4.48 36.28 4.73
1642 5340 2.681344 GGTTCCGAAATTTAGGATGCGT 59.319 45.455 19.22 0.00 36.28 5.24
1643 5341 3.872771 GGTTCCGAAATTTAGGATGCGTA 59.127 43.478 19.22 3.04 36.28 4.42
1644 5342 4.333372 GGTTCCGAAATTTAGGATGCGTAA 59.667 41.667 19.22 2.36 36.28 3.18
1645 5343 5.008316 GGTTCCGAAATTTAGGATGCGTAAT 59.992 40.000 19.22 0.00 36.28 1.89
1646 5344 5.666969 TCCGAAATTTAGGATGCGTAATG 57.333 39.130 15.28 0.00 0.00 1.90
1647 5345 5.120399 TCCGAAATTTAGGATGCGTAATGT 58.880 37.500 15.28 0.00 0.00 2.71
1648 5346 5.235616 TCCGAAATTTAGGATGCGTAATGTC 59.764 40.000 15.28 0.00 0.00 3.06
1649 5347 5.007234 CCGAAATTTAGGATGCGTAATGTCA 59.993 40.000 11.63 0.00 0.00 3.58
1650 5348 6.129393 CGAAATTTAGGATGCGTAATGTCAG 58.871 40.000 0.00 0.00 0.00 3.51
1651 5349 6.238103 CGAAATTTAGGATGCGTAATGTCAGT 60.238 38.462 0.00 0.00 0.00 3.41
1652 5350 5.991328 ATTTAGGATGCGTAATGTCAGTG 57.009 39.130 0.00 0.00 0.00 3.66
1653 5351 2.315925 AGGATGCGTAATGTCAGTGG 57.684 50.000 0.00 0.00 0.00 4.00
1654 5352 1.831106 AGGATGCGTAATGTCAGTGGA 59.169 47.619 0.00 0.00 0.00 4.02
1655 5353 1.933853 GGATGCGTAATGTCAGTGGAC 59.066 52.381 0.00 0.00 44.57 4.02
1656 5354 1.933853 GATGCGTAATGTCAGTGGACC 59.066 52.381 0.00 0.00 43.65 4.46
1657 5355 0.682292 TGCGTAATGTCAGTGGACCA 59.318 50.000 0.00 0.00 43.65 4.02
1658 5356 1.070914 TGCGTAATGTCAGTGGACCAA 59.929 47.619 0.00 0.00 43.65 3.67
1659 5357 2.290008 TGCGTAATGTCAGTGGACCAAT 60.290 45.455 0.00 0.00 43.65 3.16
1660 5358 2.095853 GCGTAATGTCAGTGGACCAATG 59.904 50.000 15.87 15.87 43.65 2.82
1661 5359 2.677836 CGTAATGTCAGTGGACCAATGG 59.322 50.000 21.14 0.00 43.65 3.16
1662 5360 2.220653 AATGTCAGTGGACCAATGGG 57.779 50.000 21.14 0.00 43.65 4.00
1663 5361 1.371467 ATGTCAGTGGACCAATGGGA 58.629 50.000 21.14 8.93 43.65 4.37
1664 5362 1.371467 TGTCAGTGGACCAATGGGAT 58.629 50.000 21.14 0.00 43.65 3.85
1665 5363 1.710244 TGTCAGTGGACCAATGGGATT 59.290 47.619 21.14 0.00 43.65 3.01
1666 5364 2.290896 TGTCAGTGGACCAATGGGATTC 60.291 50.000 21.14 8.15 43.65 2.52
1667 5365 2.025887 GTCAGTGGACCAATGGGATTCT 60.026 50.000 21.14 0.00 38.12 2.40
1700 5399 2.488153 GACCTTGTGGGATGTTAACTGC 59.512 50.000 7.22 0.00 38.76 4.40
1742 5447 2.105006 AGTGCAGCACTTATGACTGG 57.895 50.000 23.11 0.00 42.59 4.00
2124 5831 6.375174 ACATAGTGCTTATTGTCATTTGCTCA 59.625 34.615 0.00 0.00 0.00 4.26
2152 5859 0.107456 AGAGGCATAATGACAGCGGG 59.893 55.000 0.00 0.00 0.00 6.13
2328 6035 3.713826 TTTCCAATCCAGTGGGTAGTC 57.286 47.619 9.92 0.00 39.34 2.59
2491 6242 6.294286 GGATCTTAATTGTTCGTGTCCCAAAA 60.294 38.462 0.00 0.00 0.00 2.44
2657 6525 5.361427 TCGATCTTTGTTCCTGTGTTTACA 58.639 37.500 0.00 0.00 35.08 2.41
2692 6563 6.206787 TGGGTGGATGGATACTTAAGAGTAA 58.793 40.000 10.09 0.00 41.48 2.24
2729 6600 4.338682 TGCTTCTCTCCCTCGTAGTAATTC 59.661 45.833 0.00 0.00 0.00 2.17
2826 6813 3.146066 GGATTAGCATTTCCGTGGCATA 58.854 45.455 0.00 0.00 0.00 3.14
2901 6891 0.886563 ACTTTTCTGGATGCTGCTGC 59.113 50.000 8.89 8.89 40.20 5.25
2903 6893 1.544691 CTTTTCTGGATGCTGCTGCTT 59.455 47.619 17.00 10.47 40.48 3.91
2943 6933 2.633488 GCACCTTGTAGGGTCTTGATC 58.367 52.381 0.00 0.00 40.58 2.92
2952 6944 0.037605 GGGTCTTGATCGGTCGTGTT 60.038 55.000 0.00 0.00 0.00 3.32
2972 6964 6.128553 CGTGTTCAAACTGAATATGTAGCTGT 60.129 38.462 0.00 0.00 38.79 4.40
3118 7172 4.579869 ACAACATGTCAGTGGATTCCTAC 58.420 43.478 0.00 1.02 0.00 3.18
3121 7175 5.441718 ACATGTCAGTGGATTCCTACATT 57.558 39.130 3.95 0.00 0.00 2.71
3139 7193 4.012374 ACATTGGAGCTTGTAGGATGTTG 58.988 43.478 0.00 0.00 0.00 3.33
3261 7414 3.081804 GGACCTTAATTGGTGGTGTCTG 58.918 50.000 4.02 0.00 41.00 3.51
3273 7426 2.880890 GTGGTGTCTGAAAGCTGAACAT 59.119 45.455 0.00 0.00 0.00 2.71
3278 7431 4.697352 GTGTCTGAAAGCTGAACATGGTAT 59.303 41.667 0.00 0.00 0.00 2.73
3325 7518 5.472137 TCTGTAGGTTCTTAATTGTTGGTGC 59.528 40.000 0.00 0.00 0.00 5.01
3351 7544 9.492973 CCTCAAAAACTGAATATGTTTTCCATT 57.507 29.630 5.29 0.00 43.94 3.16
3468 7818 3.302740 GCGCTCTGTTATGAACTGTATGC 60.303 47.826 0.00 0.00 0.00 3.14
3600 7956 2.159327 AATTGAAAGTTGCCTGCTGC 57.841 45.000 0.00 0.00 41.77 5.25
3639 7999 6.263516 AGAATGTCAGTGGATCAACATTTG 57.736 37.500 2.34 0.00 41.18 2.32
3674 8040 3.876320 GCATTTTCCCTTTTTGCTTGTCA 59.124 39.130 0.00 0.00 0.00 3.58
3740 8106 7.630082 TCTTGCTAGGATAACAAAATGGTACT 58.370 34.615 0.00 0.00 0.00 2.73
3741 8107 7.769044 TCTTGCTAGGATAACAAAATGGTACTC 59.231 37.037 0.00 0.00 0.00 2.59
3742 8108 6.354130 TGCTAGGATAACAAAATGGTACTCC 58.646 40.000 0.00 0.00 0.00 3.85
3743 8109 5.763698 GCTAGGATAACAAAATGGTACTCCC 59.236 44.000 0.00 0.00 0.00 4.30
3744 8110 6.409349 GCTAGGATAACAAAATGGTACTCCCT 60.409 42.308 0.00 0.00 0.00 4.20
3745 8111 6.002653 AGGATAACAAAATGGTACTCCCTC 57.997 41.667 0.00 0.00 0.00 4.30
3746 8112 5.104067 AGGATAACAAAATGGTACTCCCTCC 60.104 44.000 0.00 0.00 0.00 4.30
3747 8113 2.781681 ACAAAATGGTACTCCCTCCG 57.218 50.000 0.00 0.00 0.00 4.63
3748 8114 1.982958 ACAAAATGGTACTCCCTCCGT 59.017 47.619 0.00 0.00 0.00 4.69
3749 8115 3.175594 ACAAAATGGTACTCCCTCCGTA 58.824 45.455 0.00 0.00 0.00 4.02
3750 8116 3.583966 ACAAAATGGTACTCCCTCCGTAA 59.416 43.478 0.00 0.00 0.00 3.18
3751 8117 4.041938 ACAAAATGGTACTCCCTCCGTAAA 59.958 41.667 0.00 0.00 0.00 2.01
3752 8118 4.482952 AAATGGTACTCCCTCCGTAAAG 57.517 45.455 0.00 0.00 0.00 1.85
3753 8119 2.610438 TGGTACTCCCTCCGTAAAGT 57.390 50.000 0.00 0.00 0.00 2.66
3754 8120 3.737559 TGGTACTCCCTCCGTAAAGTA 57.262 47.619 0.00 0.00 0.00 2.24
3755 8121 4.046286 TGGTACTCCCTCCGTAAAGTAA 57.954 45.455 0.00 0.00 0.00 2.24
3756 8122 4.613437 TGGTACTCCCTCCGTAAAGTAAT 58.387 43.478 0.00 0.00 0.00 1.89
3757 8123 5.765510 TGGTACTCCCTCCGTAAAGTAATA 58.234 41.667 0.00 0.00 0.00 0.98
3758 8124 6.376248 TGGTACTCCCTCCGTAAAGTAATAT 58.624 40.000 0.00 0.00 0.00 1.28
3759 8125 7.526041 TGGTACTCCCTCCGTAAAGTAATATA 58.474 38.462 0.00 0.00 0.00 0.86
3760 8126 8.004215 TGGTACTCCCTCCGTAAAGTAATATAA 58.996 37.037 0.00 0.00 0.00 0.98
3761 8127 8.518702 GGTACTCCCTCCGTAAAGTAATATAAG 58.481 40.741 0.00 0.00 0.00 1.73
3762 8128 9.289782 GTACTCCCTCCGTAAAGTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3763 8129 8.406730 ACTCCCTCCGTAAAGTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3764 8130 7.039853 ACTCCCTCCGTAAAGTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3765 8131 6.072286 TCCCTCCGTAAAGTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3766 8132 6.294397 CCCTCCGTAAAGTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3767 8133 7.144000 CCTCCGTAAAGTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3768 8134 7.650903 CCTCCGTAAAGTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3769 8135 9.669353 CTCCGTAAAGTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3770 8136 9.669353 TCCGTAAAGTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 0.00 1.85
3771 8137 9.669353 CCGTAAAGTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 0.00 2.10
3784 8150 8.828688 AAGAGCGTTTAGAACACTATTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
3817 8183 9.813446 AACGTTCTTATATTAGTTTACAGAGGG 57.187 33.333 0.00 0.00 0.00 4.30
3818 8184 9.193806 ACGTTCTTATATTAGTTTACAGAGGGA 57.806 33.333 0.00 0.00 0.00 4.20
3819 8185 9.680315 CGTTCTTATATTAGTTTACAGAGGGAG 57.320 37.037 0.00 0.00 0.00 4.30
4164 8944 9.753674 TTGTATTTTCTCCAGTTCATTATCCTT 57.246 29.630 0.00 0.00 0.00 3.36
4194 8977 5.163723 TGTTGCTGCTGATCTTTATGCTAAC 60.164 40.000 0.00 0.00 0.00 2.34
4317 9100 1.843992 CTCTGTGTTGCAAAAGCACC 58.156 50.000 14.11 0.00 32.62 5.01
4403 9186 0.528924 ACATACGGCTGCAACGAGTA 59.471 50.000 16.24 6.94 34.93 2.59
4530 9313 1.667830 CCACTTCGTCACCGCACAT 60.668 57.895 0.00 0.00 0.00 3.21
4743 9526 1.376424 CTCGGCTGCTCATGGTGTT 60.376 57.895 0.00 0.00 0.00 3.32
5140 9985 8.401709 AGTAGAATTTATCTTTGCTTAGCTTGC 58.598 33.333 5.60 0.00 39.71 4.01
5158 10003 5.814705 AGCTTGCTGTCTTGTTATGTATCTC 59.185 40.000 0.00 0.00 0.00 2.75
5409 10284 6.439636 TTCCTCTCTCAGAAAAATCTTCCA 57.560 37.500 0.00 0.00 0.00 3.53
5514 10396 7.817478 TCCTCCTTTTTGAAAAAGAAGACAAAC 59.183 33.333 26.93 0.00 33.09 2.93
5648 10533 6.265196 TCTGTAGCTTGTTGTCATTTGGAATT 59.735 34.615 0.00 0.00 0.00 2.17
5649 10534 7.446931 TCTGTAGCTTGTTGTCATTTGGAATTA 59.553 33.333 0.00 0.00 0.00 1.40
5710 10659 9.965902 ATGAATGAGTTTCCTCTTTGTTATACT 57.034 29.630 0.00 0.00 38.61 2.12
5711 10660 9.436957 TGAATGAGTTTCCTCTTTGTTATACTC 57.563 33.333 0.00 0.00 38.61 2.59
5712 10661 8.794335 AATGAGTTTCCTCTTTGTTATACTCC 57.206 34.615 0.00 0.00 38.61 3.85
5713 10662 6.708285 TGAGTTTCCTCTTTGTTATACTCCC 58.292 40.000 0.00 0.00 38.61 4.30
5714 10663 6.500751 TGAGTTTCCTCTTTGTTATACTCCCT 59.499 38.462 0.00 0.00 38.61 4.20
5715 10664 6.948589 AGTTTCCTCTTTGTTATACTCCCTC 58.051 40.000 0.00 0.00 0.00 4.30
5716 10665 6.731448 AGTTTCCTCTTTGTTATACTCCCTCT 59.269 38.462 0.00 0.00 0.00 3.69
5717 10666 6.546428 TTCCTCTTTGTTATACTCCCTCTG 57.454 41.667 0.00 0.00 0.00 3.35
5718 10667 5.590818 TCCTCTTTGTTATACTCCCTCTGT 58.409 41.667 0.00 0.00 0.00 3.41
5720 10669 5.163395 CCTCTTTGTTATACTCCCTCTGTCC 60.163 48.000 0.00 0.00 0.00 4.02
5723 10672 7.186972 TCTTTGTTATACTCCCTCTGTCCTAA 58.813 38.462 0.00 0.00 0.00 2.69
5725 10674 7.801893 TTGTTATACTCCCTCTGTCCTAAAA 57.198 36.000 0.00 0.00 0.00 1.52
5726 10675 7.989947 TGTTATACTCCCTCTGTCCTAAAAT 57.010 36.000 0.00 0.00 0.00 1.82
5727 10676 8.388656 TGTTATACTCCCTCTGTCCTAAAATT 57.611 34.615 0.00 0.00 0.00 1.82
5728 10677 8.483758 TGTTATACTCCCTCTGTCCTAAAATTC 58.516 37.037 0.00 0.00 0.00 2.17
5729 10678 8.706521 GTTATACTCCCTCTGTCCTAAAATTCT 58.293 37.037 0.00 0.00 0.00 2.40
5730 10679 7.757242 ATACTCCCTCTGTCCTAAAATTCTT 57.243 36.000 0.00 0.00 0.00 2.52
5731 10680 5.810095 ACTCCCTCTGTCCTAAAATTCTTG 58.190 41.667 0.00 0.00 0.00 3.02
5736 10685 7.236847 TCCCTCTGTCCTAAAATTCTTGTCTTA 59.763 37.037 0.00 0.00 0.00 2.10
5737 10686 7.550906 CCCTCTGTCCTAAAATTCTTGTCTTAG 59.449 40.741 0.00 0.00 0.00 2.18
5738 10687 8.314751 CCTCTGTCCTAAAATTCTTGTCTTAGA 58.685 37.037 0.00 0.00 0.00 2.10
5742 10691 9.151471 TGTCCTAAAATTCTTGTCTTAGATTCG 57.849 33.333 0.00 0.00 0.00 3.34
5743 10692 9.152595 GTCCTAAAATTCTTGTCTTAGATTCGT 57.847 33.333 0.00 0.00 0.00 3.85
5744 10693 9.367444 TCCTAAAATTCTTGTCTTAGATTCGTC 57.633 33.333 0.00 0.00 0.00 4.20
5753 10702 9.004717 TCTTGTCTTAGATTCGTCTAGATATGG 57.995 37.037 0.00 0.00 0.00 2.74
5796 10745 8.960591 ACCATGTATCTAAGACAAGATTTTTGG 58.039 33.333 0.00 0.00 37.41 3.28
5797 10746 8.408601 CCATGTATCTAAGACAAGATTTTTGGG 58.591 37.037 0.00 0.00 37.41 4.12
5798 10747 9.177608 CATGTATCTAAGACAAGATTTTTGGGA 57.822 33.333 0.00 0.00 37.41 4.37
5799 10748 8.561738 TGTATCTAAGACAAGATTTTTGGGAC 57.438 34.615 0.00 0.00 37.41 4.46
5800 10749 6.743575 ATCTAAGACAAGATTTTTGGGACG 57.256 37.500 0.00 0.00 32.09 4.79
5803 10752 3.412386 AGACAAGATTTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
5804 10753 2.488153 GACAAGATTTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5805 10754 1.818674 CAAGATTTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5806 10755 1.368374 AGATTTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
5807 10756 1.282157 AGATTTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
5808 10757 1.004394 GATTTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
5809 10758 1.732117 TTTTTGGGACGGAGGGAGTA 58.268 50.000 0.00 0.00 0.00 2.59
5810 10759 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5822 10771 4.120589 GGAGGGAGTACAAAATAGCTTCG 58.879 47.826 0.00 0.00 0.00 3.79
5872 11266 0.679505 AGACCGCACATACACACAGT 59.320 50.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.671845 GAAGAGCCATCGTCGACTAGT 59.328 52.381 14.70 0.00 0.00 2.57
78 79 1.016130 CGTTGCAGAAGAGCCATCGT 61.016 55.000 0.00 0.00 0.00 3.73
108 109 1.772182 CTTAACCCTAGATCTGCGCG 58.228 55.000 5.18 0.00 0.00 6.86
135 136 2.910199 TCATGAGCCACATCTTAGTGC 58.090 47.619 0.00 0.00 38.18 4.40
136 137 3.624861 GGTTCATGAGCCACATCTTAGTG 59.375 47.826 22.53 0.00 37.07 2.74
137 138 3.264193 TGGTTCATGAGCCACATCTTAGT 59.736 43.478 25.76 0.00 36.75 2.24
138 139 3.877559 TGGTTCATGAGCCACATCTTAG 58.122 45.455 25.76 0.00 36.75 2.18
139 140 3.998913 TGGTTCATGAGCCACATCTTA 57.001 42.857 25.76 2.81 36.75 2.10
148 161 2.843701 CCATAGAGGTGGTTCATGAGC 58.156 52.381 0.04 0.04 34.46 4.26
235 3542 7.813852 AAAGTTTTGTGTACATTGCGTTAAA 57.186 28.000 0.00 0.00 0.00 1.52
301 3608 3.232213 TGATTGACGTCTAGCTGAACC 57.768 47.619 17.92 0.00 0.00 3.62
302 3609 5.348724 TCAAATGATTGACGTCTAGCTGAAC 59.651 40.000 17.92 0.00 40.59 3.18
310 3617 9.480053 AAATTTCATTTCAAATGATTGACGTCT 57.520 25.926 17.92 0.00 45.01 4.18
321 3628 8.435982 TGGACTTACCCAAATTTCATTTCAAAT 58.564 29.630 0.00 0.00 38.00 2.32
346 3654 1.407437 CCTCCCTTCCCGACAGAAATG 60.407 57.143 0.00 0.00 0.00 2.32
355 3663 1.758906 GACTCCTCCTCCCTTCCCG 60.759 68.421 0.00 0.00 0.00 5.14
372 3680 2.613739 GATGTAGGTGCTCTGCGCGA 62.614 60.000 12.10 1.90 43.27 5.87
395 3703 4.262635 CCTGCATCCCTAAGATATGTCGTT 60.263 45.833 0.00 0.00 32.37 3.85
468 3790 2.034221 GTGAACCTGCACCCCCTC 59.966 66.667 0.00 0.00 32.68 4.30
495 3817 1.039068 TAAACCGACGAACCACCTGA 58.961 50.000 0.00 0.00 0.00 3.86
523 3845 2.032071 CTTGTCACCACCCCCGAC 59.968 66.667 0.00 0.00 0.00 4.79
534 3856 4.776322 CCATCGCCGGCCTTGTCA 62.776 66.667 23.46 0.00 0.00 3.58
545 3867 1.006805 CTCGACCATCCTCCATCGC 60.007 63.158 0.00 0.00 34.59 4.58
579 3901 2.847234 ACTCCCACAACCGCCTCA 60.847 61.111 0.00 0.00 0.00 3.86
615 3937 2.511600 CCTAACCGCTTGCCTCCG 60.512 66.667 0.00 0.00 0.00 4.63
648 3970 4.543590 TCTCTTTTTCTTCTCATCGCCT 57.456 40.909 0.00 0.00 0.00 5.52
672 3994 7.882791 TCTTCAACATCAAACTGGTACATACAT 59.117 33.333 0.00 0.00 38.20 2.29
683 4005 6.605849 CGTGATTCATCTTCAACATCAAACT 58.394 36.000 0.00 0.00 0.00 2.66
703 4025 0.904649 AGATCCAATGGACAGCGTGA 59.095 50.000 3.09 0.00 32.98 4.35
707 4029 3.548770 TGATCAAGATCCAATGGACAGC 58.451 45.455 3.09 0.00 37.02 4.40
737 4059 3.356290 CACCCTCTTATCCCAACCTTTG 58.644 50.000 0.00 0.00 0.00 2.77
738 4060 2.311841 CCACCCTCTTATCCCAACCTTT 59.688 50.000 0.00 0.00 0.00 3.11
739 4061 1.923148 CCACCCTCTTATCCCAACCTT 59.077 52.381 0.00 0.00 0.00 3.50
740 4062 1.082194 TCCACCCTCTTATCCCAACCT 59.918 52.381 0.00 0.00 0.00 3.50
742 4064 3.732048 TTTCCACCCTCTTATCCCAAC 57.268 47.619 0.00 0.00 0.00 3.77
743 4065 3.052944 CCATTTCCACCCTCTTATCCCAA 60.053 47.826 0.00 0.00 0.00 4.12
745 4067 2.783510 TCCATTTCCACCCTCTTATCCC 59.216 50.000 0.00 0.00 0.00 3.85
746 4068 3.459969 AGTCCATTTCCACCCTCTTATCC 59.540 47.826 0.00 0.00 0.00 2.59
747 4069 4.164221 TCAGTCCATTTCCACCCTCTTATC 59.836 45.833 0.00 0.00 0.00 1.75
748 4070 4.111577 TCAGTCCATTTCCACCCTCTTAT 58.888 43.478 0.00 0.00 0.00 1.73
749 4071 3.526899 TCAGTCCATTTCCACCCTCTTA 58.473 45.455 0.00 0.00 0.00 2.10
750 4072 2.348472 TCAGTCCATTTCCACCCTCTT 58.652 47.619 0.00 0.00 0.00 2.85
751 4073 2.044793 TCAGTCCATTTCCACCCTCT 57.955 50.000 0.00 0.00 0.00 3.69
752 4074 2.422093 GGATCAGTCCATTTCCACCCTC 60.422 54.545 0.00 0.00 44.42 4.30
753 4075 1.566231 GGATCAGTCCATTTCCACCCT 59.434 52.381 0.00 0.00 44.42 4.34
765 4087 7.662604 AAATTCATTTTGCAAAGGATCAGTC 57.337 32.000 12.41 0.00 0.00 3.51
820 4142 8.500753 AACGTAGATGCCAGTAATGAAAATAA 57.499 30.769 0.00 0.00 0.00 1.40
822 4144 6.823689 AGAACGTAGATGCCAGTAATGAAAAT 59.176 34.615 0.00 0.00 0.00 1.82
829 4151 8.418662 ACAATATAAGAACGTAGATGCCAGTAA 58.581 33.333 0.00 0.00 0.00 2.24
830 4152 7.865889 CACAATATAAGAACGTAGATGCCAGTA 59.134 37.037 0.00 0.00 0.00 2.74
839 4161 7.140048 GTCCCTCTCACAATATAAGAACGTAG 58.860 42.308 0.00 0.00 0.00 3.51
842 4164 4.976731 CGTCCCTCTCACAATATAAGAACG 59.023 45.833 0.00 0.00 0.00 3.95
843 4165 5.068723 TCCGTCCCTCTCACAATATAAGAAC 59.931 44.000 0.00 0.00 0.00 3.01
846 4168 4.585162 ACTCCGTCCCTCTCACAATATAAG 59.415 45.833 0.00 0.00 0.00 1.73
847 4169 4.543689 ACTCCGTCCCTCTCACAATATAA 58.456 43.478 0.00 0.00 0.00 0.98
848 4170 4.180377 ACTCCGTCCCTCTCACAATATA 57.820 45.455 0.00 0.00 0.00 0.86
849 4171 3.033659 ACTCCGTCCCTCTCACAATAT 57.966 47.619 0.00 0.00 0.00 1.28
851 4173 2.526888 TACTCCGTCCCTCTCACAAT 57.473 50.000 0.00 0.00 0.00 2.71
852 4174 2.025226 AGATACTCCGTCCCTCTCACAA 60.025 50.000 0.00 0.00 0.00 3.33
853 4175 1.564818 AGATACTCCGTCCCTCTCACA 59.435 52.381 0.00 0.00 0.00 3.58
854 4176 2.351706 AGATACTCCGTCCCTCTCAC 57.648 55.000 0.00 0.00 0.00 3.51
855 4177 2.656002 CAAGATACTCCGTCCCTCTCA 58.344 52.381 0.00 0.00 0.00 3.27
856 4178 1.338655 GCAAGATACTCCGTCCCTCTC 59.661 57.143 0.00 0.00 0.00 3.20
857 4179 1.342076 TGCAAGATACTCCGTCCCTCT 60.342 52.381 0.00 0.00 0.00 3.69
858 4180 1.067821 CTGCAAGATACTCCGTCCCTC 59.932 57.143 0.00 0.00 34.07 4.30
859 4181 1.115467 CTGCAAGATACTCCGTCCCT 58.885 55.000 0.00 0.00 34.07 4.20
860 4182 0.530870 GCTGCAAGATACTCCGTCCC 60.531 60.000 0.00 0.00 34.07 4.46
861 4183 0.530870 GGCTGCAAGATACTCCGTCC 60.531 60.000 0.50 0.00 34.07 4.79
862 4184 0.175760 TGGCTGCAAGATACTCCGTC 59.824 55.000 0.50 0.00 34.07 4.79
863 4185 0.176680 CTGGCTGCAAGATACTCCGT 59.823 55.000 0.00 0.00 34.07 4.69
864 4186 1.156645 GCTGGCTGCAAGATACTCCG 61.157 60.000 8.57 0.00 42.31 4.63
865 4187 1.156645 CGCTGGCTGCAAGATACTCC 61.157 60.000 16.76 0.00 43.06 3.85
866 4188 1.770085 GCGCTGGCTGCAAGATACTC 61.770 60.000 16.76 0.00 43.06 2.59
867 4189 1.817099 GCGCTGGCTGCAAGATACT 60.817 57.895 16.76 0.00 43.06 2.12
868 4190 1.647545 TTGCGCTGGCTGCAAGATAC 61.648 55.000 16.76 0.00 46.62 2.24
869 4191 1.377072 TTGCGCTGGCTGCAAGATA 60.377 52.632 16.76 0.00 46.62 1.98
870 4192 2.674033 TTGCGCTGGCTGCAAGAT 60.674 55.556 16.76 0.00 46.62 2.40
875 4197 4.283403 TTTGGTTGCGCTGGCTGC 62.283 61.111 9.73 6.26 40.82 5.25
884 4206 0.827368 TTTGGTGAGGGTTTGGTTGC 59.173 50.000 0.00 0.00 0.00 4.17
952 4279 2.919856 AGCAGAGCCGAGGTGTGT 60.920 61.111 0.00 0.00 0.00 3.72
1116 4468 4.530161 AGAGCTTTGGACTGTATCTTGACT 59.470 41.667 0.00 0.00 0.00 3.41
1266 4638 0.812811 CAGCCGTCCACATCTGATGG 60.813 60.000 20.83 6.77 41.08 3.51
1277 4650 2.202810 GAGCAGCTACAGCCGTCC 60.203 66.667 0.00 0.00 43.38 4.79
1278 4651 2.202810 GGAGCAGCTACAGCCGTC 60.203 66.667 0.00 0.00 43.38 4.79
1279 4652 3.775654 GGGAGCAGCTACAGCCGT 61.776 66.667 7.05 0.00 43.38 5.68
1280 4653 4.537433 GGGGAGCAGCTACAGCCG 62.537 72.222 7.05 0.00 43.38 5.52
1296 4669 4.465886 ACAGCCTACTAGTATCAGTGAGG 58.534 47.826 2.33 2.02 0.00 3.86
1394 4788 7.931578 ATTCATGCCATTGAAAATGAAATGT 57.068 28.000 10.57 0.00 41.11 2.71
1456 4852 4.379499 GCATTCAGAAAGGTAAAACGGGAG 60.379 45.833 0.00 0.00 0.00 4.30
1499 5193 0.451783 CCTACAAGGCGGCATTTGTC 59.548 55.000 17.97 0.00 38.41 3.18
1542 5236 7.373617 TGGTCCTAAATGCTACATATTCAGA 57.626 36.000 0.00 0.00 0.00 3.27
1566 5264 6.407525 GCAGATACAGACTAGATTGGAAACCT 60.408 42.308 0.00 0.00 0.00 3.50
1622 5320 5.473796 TTACGCATCCTAAATTTCGGAAC 57.526 39.130 14.81 9.57 32.12 3.62
1624 5322 5.120399 ACATTACGCATCCTAAATTTCGGA 58.880 37.500 13.37 13.37 0.00 4.55
1625 5323 5.007234 TGACATTACGCATCCTAAATTTCGG 59.993 40.000 2.29 2.29 0.00 4.30
1626 5324 6.043327 TGACATTACGCATCCTAAATTTCG 57.957 37.500 0.00 0.00 0.00 3.46
1627 5325 6.907212 CACTGACATTACGCATCCTAAATTTC 59.093 38.462 0.00 0.00 0.00 2.17
1628 5326 6.183360 CCACTGACATTACGCATCCTAAATTT 60.183 38.462 0.00 0.00 0.00 1.82
1629 5327 5.296780 CCACTGACATTACGCATCCTAAATT 59.703 40.000 0.00 0.00 0.00 1.82
1630 5328 4.816385 CCACTGACATTACGCATCCTAAAT 59.184 41.667 0.00 0.00 0.00 1.40
1631 5329 4.081365 TCCACTGACATTACGCATCCTAAA 60.081 41.667 0.00 0.00 0.00 1.85
1632 5330 3.449377 TCCACTGACATTACGCATCCTAA 59.551 43.478 0.00 0.00 0.00 2.69
1633 5331 3.028130 TCCACTGACATTACGCATCCTA 58.972 45.455 0.00 0.00 0.00 2.94
1634 5332 1.831106 TCCACTGACATTACGCATCCT 59.169 47.619 0.00 0.00 0.00 3.24
1635 5333 1.933853 GTCCACTGACATTACGCATCC 59.066 52.381 0.00 0.00 41.37 3.51
1636 5334 1.933853 GGTCCACTGACATTACGCATC 59.066 52.381 0.00 0.00 43.65 3.91
1637 5335 1.277842 TGGTCCACTGACATTACGCAT 59.722 47.619 0.00 0.00 43.65 4.73
1638 5336 0.682292 TGGTCCACTGACATTACGCA 59.318 50.000 0.00 0.00 43.65 5.24
1639 5337 1.803334 TTGGTCCACTGACATTACGC 58.197 50.000 0.00 0.00 43.65 4.42
1640 5338 2.677836 CCATTGGTCCACTGACATTACG 59.322 50.000 10.72 0.00 43.65 3.18
1641 5339 3.016736 CCCATTGGTCCACTGACATTAC 58.983 50.000 10.72 0.00 43.65 1.89
1642 5340 2.916269 TCCCATTGGTCCACTGACATTA 59.084 45.455 10.72 0.00 43.65 1.90
1643 5341 1.710244 TCCCATTGGTCCACTGACATT 59.290 47.619 10.72 0.00 43.65 2.71
1644 5342 1.371467 TCCCATTGGTCCACTGACAT 58.629 50.000 10.72 0.00 43.65 3.06
1645 5343 1.371467 ATCCCATTGGTCCACTGACA 58.629 50.000 10.72 0.00 43.65 3.58
1646 5344 2.025887 AGAATCCCATTGGTCCACTGAC 60.026 50.000 10.72 0.00 40.98 3.51
1647 5345 2.278245 AGAATCCCATTGGTCCACTGA 58.722 47.619 10.72 0.00 0.00 3.41
1648 5346 2.814805 AGAATCCCATTGGTCCACTG 57.185 50.000 2.17 2.17 0.00 3.66
1649 5347 3.564352 GGAAAGAATCCCATTGGTCCACT 60.564 47.826 1.20 0.00 43.00 4.00
1650 5348 2.760650 GGAAAGAATCCCATTGGTCCAC 59.239 50.000 1.20 0.00 43.00 4.02
1651 5349 3.100207 GGAAAGAATCCCATTGGTCCA 57.900 47.619 1.20 0.00 43.00 4.02
1662 5360 5.952347 ACAAGGTCCCATTTAGGAAAGAATC 59.048 40.000 0.00 0.00 41.22 2.52
1663 5361 5.716703 CACAAGGTCCCATTTAGGAAAGAAT 59.283 40.000 0.00 0.00 41.22 2.40
1664 5362 5.076873 CACAAGGTCCCATTTAGGAAAGAA 58.923 41.667 0.00 0.00 41.22 2.52
1665 5363 4.508405 CCACAAGGTCCCATTTAGGAAAGA 60.508 45.833 0.00 0.00 41.22 2.52
1666 5364 3.763897 CCACAAGGTCCCATTTAGGAAAG 59.236 47.826 0.00 0.00 41.22 2.62
1667 5365 3.501385 CCCACAAGGTCCCATTTAGGAAA 60.501 47.826 0.00 0.00 41.22 3.13
1700 5399 3.565482 TGTTTTTAGCTTGGAGACAGCAG 59.435 43.478 0.00 0.00 44.54 4.24
1742 5447 3.891049 ACTGCCCACTAGATTGGAAATC 58.109 45.455 0.00 0.00 39.24 2.17
2124 5831 7.467811 CGCTGTCATTATGCCTCTTAAATTTCT 60.468 37.037 0.00 0.00 0.00 2.52
2152 5859 1.092921 TATGCCACCGAAATGCCGAC 61.093 55.000 0.00 0.00 0.00 4.79
2206 5913 5.700402 ATCCTAGCAAGAATACCAACAGT 57.300 39.130 0.00 0.00 0.00 3.55
2379 6130 1.066573 CCCTGTTCAGCTTCGAGACAT 60.067 52.381 0.00 0.00 0.00 3.06
2543 6411 6.743575 ATAGTTCATAACAAGAGTGCAACC 57.256 37.500 0.00 0.00 37.80 3.77
2692 6563 7.237263 AGGGAGAGAAGCATCTACATCAATATT 59.763 37.037 0.00 0.00 35.54 1.28
2868 6858 9.014297 CATCCAGAAAAGTAAATGGAACTACTT 57.986 33.333 0.00 0.00 44.63 2.24
2869 6859 7.121315 GCATCCAGAAAAGTAAATGGAACTACT 59.879 37.037 0.00 0.00 44.63 2.57
2870 6860 7.121315 AGCATCCAGAAAAGTAAATGGAACTAC 59.879 37.037 0.00 0.00 44.63 2.73
2901 6891 4.321230 GCCACTTGTTCATCCTACCAAAAG 60.321 45.833 0.00 0.00 0.00 2.27
2903 6893 3.153919 GCCACTTGTTCATCCTACCAAA 58.846 45.455 0.00 0.00 0.00 3.28
2943 6933 4.151689 ACATATTCAGTTTGAACACGACCG 59.848 41.667 0.00 0.00 39.45 4.79
2952 6944 7.764443 GTCCTAACAGCTACATATTCAGTTTGA 59.236 37.037 0.00 0.00 0.00 2.69
2972 6964 5.098663 ACTAGATTGGAAACTGGGTCCTAA 58.901 41.667 0.00 0.00 36.03 2.69
3118 7172 4.095483 GTCAACATCCTACAAGCTCCAATG 59.905 45.833 0.00 0.00 0.00 2.82
3121 7175 2.906389 AGTCAACATCCTACAAGCTCCA 59.094 45.455 0.00 0.00 0.00 3.86
3139 7193 1.140816 GCTTCGAGACACCAACAGTC 58.859 55.000 0.00 0.00 36.26 3.51
3261 7414 6.261118 CAGCTTAATACCATGTTCAGCTTTC 58.739 40.000 1.58 0.00 34.79 2.62
3273 7426 8.251383 AGTAATAAGAGAGCAGCTTAATACCA 57.749 34.615 0.00 0.00 35.96 3.25
3278 7431 6.836527 AGAGGAGTAATAAGAGAGCAGCTTAA 59.163 38.462 0.00 0.00 32.16 1.85
3325 7518 9.492973 AATGGAAAACATATTCAGTTTTTGAGG 57.507 29.630 5.63 0.00 46.01 3.86
3351 7544 6.996180 AGTAAGGGATAGCTAAGTTATGCA 57.004 37.500 0.00 0.00 0.00 3.96
3423 7773 1.785041 GCGTGCAGAAACAGGAAGCA 61.785 55.000 0.00 0.00 32.64 3.91
3448 7798 5.745514 CATGCATACAGTTCATAACAGAGC 58.254 41.667 0.00 0.00 0.00 4.09
3468 7818 2.413765 CGGAAGAAGAAAGTGCAGCATG 60.414 50.000 0.00 0.00 40.87 4.06
3674 8040 9.665719 ACAAGTAAATGGAAAACATGTTTCTTT 57.334 25.926 23.47 19.76 40.44 2.52
3740 8106 6.072286 CGCTCTTATATTACTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
3741 8107 6.091437 CGCTCTTATATTACTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
3742 8108 6.675987 ACGCTCTTATATTACTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3743 8109 8.571461 AAACGCTCTTATATTACTTTACGGAG 57.429 34.615 0.00 0.00 0.00 4.63
3744 8110 9.669353 CTAAACGCTCTTATATTACTTTACGGA 57.331 33.333 0.00 0.00 0.00 4.69
3745 8111 9.669353 TCTAAACGCTCTTATATTACTTTACGG 57.331 33.333 0.00 0.00 0.00 4.02
3791 8157 9.813446 CCCTCTGTAAACTAATATAAGAACGTT 57.187 33.333 0.00 0.00 0.00 3.99
3792 8158 9.193806 TCCCTCTGTAAACTAATATAAGAACGT 57.806 33.333 0.00 0.00 0.00 3.99
3793 8159 9.680315 CTCCCTCTGTAAACTAATATAAGAACG 57.320 37.037 0.00 0.00 0.00 3.95
3798 8164 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
3800 8166 8.871125 CATGGTACTCCCTCTGTAAACTAATAT 58.129 37.037 0.00 0.00 0.00 1.28
3801 8167 7.842743 ACATGGTACTCCCTCTGTAAACTAATA 59.157 37.037 0.00 0.00 30.83 0.98
3802 8168 6.672657 ACATGGTACTCCCTCTGTAAACTAAT 59.327 38.462 0.00 0.00 30.83 1.73
3803 8169 6.021030 ACATGGTACTCCCTCTGTAAACTAA 58.979 40.000 0.00 0.00 30.83 2.24
3804 8170 5.586877 ACATGGTACTCCCTCTGTAAACTA 58.413 41.667 0.00 0.00 30.83 2.24
3805 8171 4.426704 ACATGGTACTCCCTCTGTAAACT 58.573 43.478 0.00 0.00 30.83 2.66
3806 8172 4.820894 ACATGGTACTCCCTCTGTAAAC 57.179 45.455 0.00 0.00 30.83 2.01
3807 8173 4.960469 CCTACATGGTACTCCCTCTGTAAA 59.040 45.833 0.00 0.00 34.06 2.01
3808 8174 4.231195 TCCTACATGGTACTCCCTCTGTAA 59.769 45.833 0.00 0.00 34.06 2.41
3809 8175 3.789840 TCCTACATGGTACTCCCTCTGTA 59.210 47.826 0.00 0.00 37.07 2.74
3810 8176 2.585900 TCCTACATGGTACTCCCTCTGT 59.414 50.000 0.00 0.00 37.07 3.41
3811 8177 3.314307 TCCTACATGGTACTCCCTCTG 57.686 52.381 0.00 0.00 37.07 3.35
3812 8178 3.181416 GGATCCTACATGGTACTCCCTCT 60.181 52.174 3.84 0.00 37.07 3.69
3813 8179 3.166679 GGATCCTACATGGTACTCCCTC 58.833 54.545 3.84 0.00 37.07 4.30
3814 8180 2.798368 AGGATCCTACATGGTACTCCCT 59.202 50.000 14.27 0.00 37.07 4.20
3815 8181 2.900546 CAGGATCCTACATGGTACTCCC 59.099 54.545 15.67 0.00 37.07 4.30
3816 8182 3.845860 TCAGGATCCTACATGGTACTCC 58.154 50.000 15.67 0.00 37.07 3.85
3817 8183 5.788450 CAATCAGGATCCTACATGGTACTC 58.212 45.833 15.67 0.00 37.07 2.59
3818 8184 4.040952 GCAATCAGGATCCTACATGGTACT 59.959 45.833 15.67 0.00 37.07 2.73
3819 8185 4.040952 AGCAATCAGGATCCTACATGGTAC 59.959 45.833 15.67 0.00 37.07 3.34
3820 8186 4.040829 CAGCAATCAGGATCCTACATGGTA 59.959 45.833 15.67 0.00 37.07 3.25
4194 8977 5.848036 CGCACACTGAAGAAACATAAGAAAG 59.152 40.000 0.00 0.00 0.00 2.62
4317 9100 1.752501 CGACGCAACGGGAATAGCTG 61.753 60.000 0.00 0.00 0.00 4.24
4329 9112 3.953444 CTGCTCGAGCTCGACGCAA 62.953 63.158 37.93 28.66 44.81 4.85
4403 9186 0.679505 TTTCTGCTGGTAGCTGACGT 59.320 50.000 9.47 0.00 46.52 4.34
4408 9191 2.354604 GCTTCTCTTTCTGCTGGTAGCT 60.355 50.000 2.24 0.00 42.97 3.32
4743 9526 0.893270 CATCGGTTTTCCCACCAGCA 60.893 55.000 0.00 0.00 36.49 4.41
4968 9770 2.484264 GTCATTGACAGTGGTGTTAGCC 59.516 50.000 11.93 0.00 36.88 3.93
5140 9985 9.809096 AGTTACATGAGATACATAACAAGACAG 57.191 33.333 0.00 0.00 37.46 3.51
5409 10284 6.724441 AGATTTCCCTTCCCTTTTTCGTTAAT 59.276 34.615 0.00 0.00 0.00 1.40
5472 10347 2.361070 GGAGGATAACCCCCAACCTCTA 60.361 54.545 0.00 0.00 44.32 2.43
5478 10353 3.403051 TCAAAAAGGAGGATAACCCCCAA 59.597 43.478 0.00 0.00 36.73 4.12
5514 10396 3.002553 GGTGCTGCAAAAATTTGTTGGAG 59.997 43.478 14.61 14.61 44.60 3.86
5648 10533 8.757982 AGGTTGGAGTTACGATAACTTCTATA 57.242 34.615 13.73 2.40 0.00 1.31
5649 10534 7.341256 TGAGGTTGGAGTTACGATAACTTCTAT 59.659 37.037 13.73 2.60 31.25 1.98
5710 10659 5.548056 AGACAAGAATTTTAGGACAGAGGGA 59.452 40.000 0.00 0.00 0.00 4.20
5711 10660 5.810095 AGACAAGAATTTTAGGACAGAGGG 58.190 41.667 0.00 0.00 0.00 4.30
5712 10661 8.314751 TCTAAGACAAGAATTTTAGGACAGAGG 58.685 37.037 0.00 0.00 0.00 3.69
5713 10662 9.883142 ATCTAAGACAAGAATTTTAGGACAGAG 57.117 33.333 0.00 0.00 0.00 3.35
5716 10665 9.151471 CGAATCTAAGACAAGAATTTTAGGACA 57.849 33.333 0.00 0.00 0.00 4.02
5717 10666 9.152595 ACGAATCTAAGACAAGAATTTTAGGAC 57.847 33.333 0.00 0.00 0.00 3.85
5718 10667 9.367444 GACGAATCTAAGACAAGAATTTTAGGA 57.633 33.333 0.00 0.00 0.00 2.94
5727 10676 9.004717 CCATATCTAGACGAATCTAAGACAAGA 57.995 37.037 0.00 0.00 36.98 3.02
5728 10677 9.004717 TCCATATCTAGACGAATCTAAGACAAG 57.995 37.037 0.00 0.00 36.98 3.16
5729 10678 8.919777 TCCATATCTAGACGAATCTAAGACAA 57.080 34.615 0.00 0.00 36.98 3.18
5730 10679 8.951243 CATCCATATCTAGACGAATCTAAGACA 58.049 37.037 0.00 0.00 36.98 3.41
5731 10680 8.952278 ACATCCATATCTAGACGAATCTAAGAC 58.048 37.037 0.00 0.00 36.98 3.01
5771 10720 8.408601 CCCAAAAATCTTGTCTTAGATACATGG 58.591 37.037 0.00 0.00 33.81 3.66
5772 10721 9.177608 TCCCAAAAATCTTGTCTTAGATACATG 57.822 33.333 0.00 0.00 33.81 3.21
5773 10722 9.178758 GTCCCAAAAATCTTGTCTTAGATACAT 57.821 33.333 0.00 0.00 33.81 2.29
5774 10723 7.333423 CGTCCCAAAAATCTTGTCTTAGATACA 59.667 37.037 0.00 0.00 33.81 2.29
5776 10725 6.821665 CCGTCCCAAAAATCTTGTCTTAGATA 59.178 38.462 0.00 0.00 33.81 1.98
5777 10726 5.648092 CCGTCCCAAAAATCTTGTCTTAGAT 59.352 40.000 0.00 0.00 36.44 1.98
5778 10727 5.001232 CCGTCCCAAAAATCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
5779 10728 5.001232 TCCGTCCCAAAAATCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
5781 10730 3.821033 CTCCGTCCCAAAAATCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
5782 10731 3.412386 CTCCGTCCCAAAAATCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
5783 10732 2.488153 CCTCCGTCCCAAAAATCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5784 10733 2.514803 CCTCCGTCCCAAAAATCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5785 10734 1.818674 CCCTCCGTCCCAAAAATCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5787 10736 1.282157 CTCCCTCCGTCCCAAAAATCT 59.718 52.381 0.00 0.00 0.00 2.40
5788 10737 1.004394 ACTCCCTCCGTCCCAAAAATC 59.996 52.381 0.00 0.00 0.00 2.17
5789 10738 1.073098 ACTCCCTCCGTCCCAAAAAT 58.927 50.000 0.00 0.00 0.00 1.82
5790 10739 1.348696 GTACTCCCTCCGTCCCAAAAA 59.651 52.381 0.00 0.00 0.00 1.94
5791 10740 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5793 10742 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
5794 10743 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
5795 10744 0.978907 TTTTGTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
5796 10745 3.740452 GCTATTTTGTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
5797 10746 3.132467 AGCTATTTTGTACTCCCTCCGTC 59.868 47.826 0.00 0.00 0.00 4.79
5798 10747 3.105283 AGCTATTTTGTACTCCCTCCGT 58.895 45.455 0.00 0.00 0.00 4.69
5799 10748 3.821421 AGCTATTTTGTACTCCCTCCG 57.179 47.619 0.00 0.00 0.00 4.63
5800 10749 4.120589 CGAAGCTATTTTGTACTCCCTCC 58.879 47.826 0.00 0.00 0.00 4.30
5803 10752 4.133013 TCCGAAGCTATTTTGTACTCCC 57.867 45.455 0.00 0.00 0.00 4.30
5804 10753 5.116882 ACATCCGAAGCTATTTTGTACTCC 58.883 41.667 0.00 0.00 0.00 3.85
5805 10754 6.979238 AGTACATCCGAAGCTATTTTGTACTC 59.021 38.462 17.07 0.00 42.61 2.59
5806 10755 6.757010 CAGTACATCCGAAGCTATTTTGTACT 59.243 38.462 17.07 17.07 45.38 2.73
5807 10756 6.755141 TCAGTACATCCGAAGCTATTTTGTAC 59.245 38.462 14.30 14.30 38.65 2.90
5808 10757 6.869695 TCAGTACATCCGAAGCTATTTTGTA 58.130 36.000 0.00 0.00 0.00 2.41
5809 10758 5.730550 TCAGTACATCCGAAGCTATTTTGT 58.269 37.500 0.00 0.00 0.00 2.83
5810 10759 6.851222 ATCAGTACATCCGAAGCTATTTTG 57.149 37.500 0.00 0.00 0.00 2.44
5822 10771 4.142600 GCACTTCCACAAATCAGTACATCC 60.143 45.833 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.