Multiple sequence alignment - TraesCS3D01G015000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G015000 chr3D 100.000 5435 0 0 1 5435 5229815 5235249 0.000000e+00 10037.0
1 TraesCS3D01G015000 chr3D 89.796 2352 203 24 3107 5435 9418006 9415669 0.000000e+00 2979.0
2 TraesCS3D01G015000 chr3D 84.105 1944 236 48 3111 4999 591822392 591820467 0.000000e+00 1810.0
3 TraesCS3D01G015000 chr3D 86.738 935 66 29 715 1604 9420464 9419543 0.000000e+00 987.0
4 TraesCS3D01G015000 chr3D 91.680 613 46 3 2446 3057 9418767 9418159 0.000000e+00 845.0
5 TraesCS3D01G015000 chr3D 87.478 559 50 10 886 1436 5221877 5222423 1.290000e-175 627.0
6 TraesCS3D01G015000 chr3D 81.054 607 83 24 1015 1604 591827211 591826620 6.420000e-124 455.0
7 TraesCS3D01G015000 chrUn 94.526 2941 117 15 2173 5105 36511260 36514164 0.000000e+00 4499.0
8 TraesCS3D01G015000 chrUn 91.775 924 38 14 701 1605 36507910 36508814 0.000000e+00 1251.0
9 TraesCS3D01G015000 chrUn 93.837 649 36 2 4788 5435 35697397 35698042 0.000000e+00 974.0
10 TraesCS3D01G015000 chrUn 93.064 346 23 1 5091 5435 36514770 36515115 6.280000e-139 505.0
11 TraesCS3D01G015000 chr3B 87.572 3130 321 36 2358 5435 28317244 28314131 0.000000e+00 3563.0
12 TraesCS3D01G015000 chr3B 83.602 1988 233 55 3110 5017 792861985 792863959 0.000000e+00 1779.0
13 TraesCS3D01G015000 chr3B 89.021 1266 105 14 3797 5043 13506747 13505497 0.000000e+00 1537.0
14 TraesCS3D01G015000 chr3B 91.711 567 44 2 3239 3804 13508687 13508123 0.000000e+00 784.0
15 TraesCS3D01G015000 chr3B 86.742 709 60 21 925 1604 28318995 28318292 0.000000e+00 758.0
16 TraesCS3D01G015000 chr3B 84.507 710 62 31 904 1608 13509762 13509096 0.000000e+00 658.0
17 TraesCS3D01G015000 chr3B 80.220 637 78 32 983 1604 792858128 792858731 8.360000e-118 435.0
18 TraesCS3D01G015000 chr3B 93.035 201 7 6 701 901 28319180 28318987 2.480000e-73 287.0
19 TraesCS3D01G015000 chr3B 85.662 272 20 4 12 266 28327966 28327697 8.970000e-68 268.0
20 TraesCS3D01G015000 chr3B 96.774 124 4 0 711 834 13526560 13526437 1.980000e-49 207.0
21 TraesCS3D01G015000 chr3B 94.355 124 7 0 711 834 13554841 13554718 2.000000e-44 191.0
22 TraesCS3D01G015000 chr3B 89.394 132 9 3 1672 1803 13508838 13508712 1.570000e-35 161.0
23 TraesCS3D01G015000 chr3B 96.721 61 0 1 229 289 13527019 13526961 3.460000e-17 100.0
24 TraesCS3D01G015000 chr3B 96.721 61 0 1 229 289 13555299 13555241 3.460000e-17 100.0
25 TraesCS3D01G015000 chr3A 90.264 2424 200 22 2353 4751 11760149 11762561 0.000000e+00 3136.0
26 TraesCS3D01G015000 chr3A 83.915 1977 239 46 3109 5017 722279608 722281573 0.000000e+00 1816.0
27 TraesCS3D01G015000 chr3A 86.806 955 62 32 694 1604 11757916 11758850 0.000000e+00 1007.0
28 TraesCS3D01G015000 chr3A 82.867 572 77 11 2494 3057 722279038 722279596 1.360000e-135 494.0
29 TraesCS3D01G015000 chr3A 81.442 652 75 25 983 1604 722275222 722275857 4.890000e-135 492.0
30 TraesCS3D01G015000 chr3A 89.264 326 11 5 1 303 11757603 11757927 2.370000e-103 387.0
31 TraesCS3D01G015000 chr3A 83.422 187 16 3 2173 2353 11759909 11760086 5.630000e-35 159.0
32 TraesCS3D01G015000 chr7B 94.444 126 7 0 426 551 106778075 106778200 1.540000e-45 195.0
33 TraesCS3D01G015000 chr7B 97.059 34 1 0 555 588 106802628 106802661 2.110000e-04 58.4
34 TraesCS3D01G015000 chr6B 94.355 124 7 0 304 427 480663645 480663768 2.000000e-44 191.0
35 TraesCS3D01G015000 chr6B 93.651 126 8 0 426 551 480664646 480664771 7.190000e-44 189.0
36 TraesCS3D01G015000 chr6B 87.903 124 14 1 297 420 480664986 480664864 1.580000e-30 145.0
37 TraesCS3D01G015000 chr6B 84.058 69 10 1 549 617 480664864 480664931 1.260000e-06 65.8
38 TraesCS3D01G015000 chr1A 92.537 134 8 2 294 427 20972943 20973074 2.000000e-44 191.0
39 TraesCS3D01G015000 chr1A 92.683 123 9 0 426 548 20973653 20973775 1.560000e-40 178.0
40 TraesCS3D01G015000 chr1A 87.402 127 13 3 580 706 20973839 20973962 5.670000e-30 143.0
41 TraesCS3D01G015000 chr1A 84.507 71 9 2 547 617 20973837 20973905 9.770000e-08 69.4
42 TraesCS3D01G015000 chr2D 94.068 118 7 0 434 551 28778866 28778749 4.330000e-41 180.0
43 TraesCS3D01G015000 chr1B 90.984 122 11 0 298 419 58020706 58020827 1.210000e-36 165.0
44 TraesCS3D01G015000 chr1B 90.164 122 12 0 299 420 32065326 32065205 5.630000e-35 159.0
45 TraesCS3D01G015000 chr1B 88.976 127 13 1 296 422 58021810 58021685 7.290000e-34 156.0
46 TraesCS3D01G015000 chr1B 83.099 71 10 2 547 616 646165477 646165546 4.540000e-06 63.9
47 TraesCS3D01G015000 chr2B 88.333 120 14 0 301 420 513707150 513707269 1.580000e-30 145.0
48 TraesCS3D01G015000 chr2B 87.500 120 13 2 300 419 503075265 503075148 2.640000e-28 137.0
49 TraesCS3D01G015000 chr7D 87.603 121 15 0 304 424 182575668 182575548 2.040000e-29 141.0
50 TraesCS3D01G015000 chr7D 80.508 118 20 3 580 696 523787094 523786979 2.700000e-13 87.9
51 TraesCS3D01G015000 chr6D 90.625 64 5 1 549 612 157660792 157660730 3.490000e-12 84.2
52 TraesCS3D01G015000 chr6A 88.406 69 7 1 549 617 86361413 86361346 1.250000e-11 82.4
53 TraesCS3D01G015000 chr2A 86.957 69 8 1 549 617 758660240 758660173 5.840000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G015000 chr3D 5229815 5235249 5434 False 10037.000000 10037 100.000000 1 5435 1 chr3D.!!$F2 5434
1 TraesCS3D01G015000 chr3D 591820467 591822392 1925 True 1810.000000 1810 84.105000 3111 4999 1 chr3D.!!$R1 1888
2 TraesCS3D01G015000 chr3D 9415669 9420464 4795 True 1603.666667 2979 89.404667 715 5435 3 chr3D.!!$R3 4720
3 TraesCS3D01G015000 chr3D 5221877 5222423 546 False 627.000000 627 87.478000 886 1436 1 chr3D.!!$F1 550
4 TraesCS3D01G015000 chr3D 591826620 591827211 591 True 455.000000 455 81.054000 1015 1604 1 chr3D.!!$R2 589
5 TraesCS3D01G015000 chrUn 36507910 36515115 7205 False 2085.000000 4499 93.121667 701 5435 3 chrUn.!!$F2 4734
6 TraesCS3D01G015000 chrUn 35697397 35698042 645 False 974.000000 974 93.837000 4788 5435 1 chrUn.!!$F1 647
7 TraesCS3D01G015000 chr3B 28314131 28319180 5049 True 1536.000000 3563 89.116333 701 5435 3 chr3B.!!$R5 4734
8 TraesCS3D01G015000 chr3B 792858128 792863959 5831 False 1107.000000 1779 81.911000 983 5017 2 chr3B.!!$F1 4034
9 TraesCS3D01G015000 chr3B 13505497 13509762 4265 True 785.000000 1537 88.658250 904 5043 4 chr3B.!!$R2 4139
10 TraesCS3D01G015000 chr3A 11757603 11762561 4958 False 1172.250000 3136 87.439000 1 4751 4 chr3A.!!$F1 4750
11 TraesCS3D01G015000 chr3A 722275222 722281573 6351 False 934.000000 1816 82.741333 983 5017 3 chr3A.!!$F2 4034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 477 0.413832 TCCAAGGACTAGAGCCACCT 59.586 55.0 0.00 0.0 0.00 4.00 F
2081 6088 0.035176 GCACGTGGGGTTTGGTACTA 59.965 55.0 18.88 0.0 0.00 1.82 F
2283 6654 0.329596 ATGTTGGAGGCTTGGAGGAC 59.670 55.0 0.00 0.0 0.00 3.85 F
2720 8108 0.537143 TGCGGGAGTGCAAGTTCATT 60.537 50.0 0.00 0.0 43.02 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2314 6685 0.100682 CATGCCAGCATCAAGAGTGC 59.899 55.000 1.19 0.0 42.81 4.40 R
3092 8581 2.029623 AGCTAATGATGCAAAGGCCTG 58.970 47.619 5.69 0.0 40.13 4.85 R
3093 8582 2.305009 GAGCTAATGATGCAAAGGCCT 58.695 47.619 0.00 0.0 40.13 5.19 R
4478 11512 0.184933 AGGGGCTTTACTTGCACACA 59.815 50.000 0.00 0.0 35.15 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.646175 GCAGTGAGACGGGTGGCTA 61.646 63.158 0.00 0.00 0.00 3.93
34 35 3.031736 TGGCTAGCGGTAAGATTCTCTT 58.968 45.455 9.00 0.00 40.35 2.85
37 38 3.319689 GCTAGCGGTAAGATTCTCTTCCT 59.680 47.826 0.00 0.00 37.89 3.36
49 50 2.185350 CTTCCTCGGCAGCATCGT 59.815 61.111 0.00 0.00 0.00 3.73
50 51 2.125552 TTCCTCGGCAGCATCGTG 60.126 61.111 0.00 0.00 0.00 4.35
296 320 9.862149 TCTATCTATCACAGTTCTACACCAATA 57.138 33.333 0.00 0.00 0.00 1.90
304 328 9.996554 TCACAGTTCTACACCAATATATAATGG 57.003 33.333 14.30 14.30 42.60 3.16
305 329 9.219603 CACAGTTCTACACCAATATATAATGGG 57.780 37.037 19.01 11.29 41.17 4.00
306 330 9.166222 ACAGTTCTACACCAATATATAATGGGA 57.834 33.333 19.01 5.78 41.17 4.37
325 349 6.762702 TGGGAAAAGTATATTTTTCGTCCC 57.237 37.500 20.67 18.59 44.26 4.46
326 350 6.486941 TGGGAAAAGTATATTTTTCGTCCCT 58.513 36.000 20.94 0.00 44.26 4.20
327 351 6.600427 TGGGAAAAGTATATTTTTCGTCCCTC 59.400 38.462 20.94 11.01 44.26 4.30
328 352 6.238293 GGGAAAAGTATATTTTTCGTCCCTCG 60.238 42.308 20.67 0.00 44.26 4.63
329 353 6.238293 GGAAAAGTATATTTTTCGTCCCTCGG 60.238 42.308 20.67 0.00 44.26 4.63
330 354 5.349061 AAGTATATTTTTCGTCCCTCGGT 57.651 39.130 0.00 0.00 40.32 4.69
331 355 5.349061 AGTATATTTTTCGTCCCTCGGTT 57.651 39.130 0.00 0.00 40.32 4.44
332 356 6.469782 AGTATATTTTTCGTCCCTCGGTTA 57.530 37.500 0.00 0.00 40.32 2.85
333 357 7.059202 AGTATATTTTTCGTCCCTCGGTTAT 57.941 36.000 0.00 0.00 40.32 1.89
334 358 7.503549 AGTATATTTTTCGTCCCTCGGTTATT 58.496 34.615 0.00 0.00 40.32 1.40
335 359 7.989170 AGTATATTTTTCGTCCCTCGGTTATTT 59.011 33.333 0.00 0.00 40.32 1.40
336 360 5.970317 ATTTTTCGTCCCTCGGTTATTTT 57.030 34.783 0.00 0.00 40.32 1.82
337 361 8.735692 ATATTTTTCGTCCCTCGGTTATTTTA 57.264 30.769 0.00 0.00 40.32 1.52
338 362 6.874288 TTTTTCGTCCCTCGGTTATTTTAA 57.126 33.333 0.00 0.00 40.32 1.52
339 363 6.874288 TTTTCGTCCCTCGGTTATTTTAAA 57.126 33.333 0.00 0.00 40.32 1.52
340 364 6.874288 TTTCGTCCCTCGGTTATTTTAAAA 57.126 33.333 2.51 2.51 40.32 1.52
341 365 6.484818 TTCGTCCCTCGGTTATTTTAAAAG 57.515 37.500 6.79 0.00 40.32 2.27
342 366 5.550290 TCGTCCCTCGGTTATTTTAAAAGT 58.450 37.500 6.79 0.00 40.32 2.66
343 367 6.696411 TCGTCCCTCGGTTATTTTAAAAGTA 58.304 36.000 6.79 0.00 40.32 2.24
344 368 7.330262 TCGTCCCTCGGTTATTTTAAAAGTAT 58.670 34.615 6.79 0.00 40.32 2.12
345 369 8.474025 TCGTCCCTCGGTTATTTTAAAAGTATA 58.526 33.333 6.79 0.00 40.32 1.47
346 370 8.542953 CGTCCCTCGGTTATTTTAAAAGTATAC 58.457 37.037 6.79 0.00 35.71 1.47
347 371 9.382275 GTCCCTCGGTTATTTTAAAAGTATACA 57.618 33.333 5.50 0.00 0.00 2.29
348 372 9.956640 TCCCTCGGTTATTTTAAAAGTATACAA 57.043 29.630 5.50 0.00 0.00 2.41
359 383 9.589461 TTTTAAAAGTATACAAATGGTCCCTCA 57.411 29.630 5.50 0.00 0.00 3.86
360 384 9.589461 TTTAAAAGTATACAAATGGTCCCTCAA 57.411 29.630 5.50 0.00 0.00 3.02
361 385 7.462571 AAAAGTATACAAATGGTCCCTCAAC 57.537 36.000 5.50 0.00 0.00 3.18
362 386 6.388619 AAGTATACAAATGGTCCCTCAACT 57.611 37.500 5.50 0.00 0.00 3.16
363 387 6.388619 AGTATACAAATGGTCCCTCAACTT 57.611 37.500 5.50 0.00 0.00 2.66
364 388 6.415573 AGTATACAAATGGTCCCTCAACTTC 58.584 40.000 5.50 0.00 0.00 3.01
365 389 3.593442 ACAAATGGTCCCTCAACTTCA 57.407 42.857 0.00 0.00 0.00 3.02
366 390 3.909732 ACAAATGGTCCCTCAACTTCAA 58.090 40.909 0.00 0.00 0.00 2.69
367 391 4.285863 ACAAATGGTCCCTCAACTTCAAA 58.714 39.130 0.00 0.00 0.00 2.69
368 392 4.714308 ACAAATGGTCCCTCAACTTCAAAA 59.286 37.500 0.00 0.00 0.00 2.44
369 393 4.937201 AATGGTCCCTCAACTTCAAAAC 57.063 40.909 0.00 0.00 0.00 2.43
370 394 2.661718 TGGTCCCTCAACTTCAAAACC 58.338 47.619 0.00 0.00 0.00 3.27
371 395 2.024846 TGGTCCCTCAACTTCAAAACCA 60.025 45.455 0.00 0.00 33.35 3.67
372 396 2.623416 GGTCCCTCAACTTCAAAACCAG 59.377 50.000 0.00 0.00 0.00 4.00
373 397 2.034685 GTCCCTCAACTTCAAAACCAGC 59.965 50.000 0.00 0.00 0.00 4.85
374 398 2.031120 CCCTCAACTTCAAAACCAGCA 58.969 47.619 0.00 0.00 0.00 4.41
375 399 2.430332 CCCTCAACTTCAAAACCAGCAA 59.570 45.455 0.00 0.00 0.00 3.91
376 400 3.118811 CCCTCAACTTCAAAACCAGCAAA 60.119 43.478 0.00 0.00 0.00 3.68
377 401 4.502962 CCTCAACTTCAAAACCAGCAAAA 58.497 39.130 0.00 0.00 0.00 2.44
378 402 4.329801 CCTCAACTTCAAAACCAGCAAAAC 59.670 41.667 0.00 0.00 0.00 2.43
379 403 5.146010 TCAACTTCAAAACCAGCAAAACT 57.854 34.783 0.00 0.00 0.00 2.66
380 404 5.546526 TCAACTTCAAAACCAGCAAAACTT 58.453 33.333 0.00 0.00 0.00 2.66
381 405 6.692486 TCAACTTCAAAACCAGCAAAACTTA 58.308 32.000 0.00 0.00 0.00 2.24
382 406 6.811170 TCAACTTCAAAACCAGCAAAACTTAG 59.189 34.615 0.00 0.00 0.00 2.18
383 407 6.280855 ACTTCAAAACCAGCAAAACTTAGT 57.719 33.333 0.00 0.00 0.00 2.24
384 408 6.330278 ACTTCAAAACCAGCAAAACTTAGTC 58.670 36.000 0.00 0.00 0.00 2.59
385 409 5.257082 TCAAAACCAGCAAAACTTAGTCC 57.743 39.130 0.00 0.00 0.00 3.85
386 410 4.098807 TCAAAACCAGCAAAACTTAGTCCC 59.901 41.667 0.00 0.00 0.00 4.46
387 411 3.595190 AACCAGCAAAACTTAGTCCCT 57.405 42.857 0.00 0.00 0.00 4.20
388 412 3.595190 ACCAGCAAAACTTAGTCCCTT 57.405 42.857 0.00 0.00 0.00 3.95
389 413 4.717279 ACCAGCAAAACTTAGTCCCTTA 57.283 40.909 0.00 0.00 0.00 2.69
390 414 5.056553 ACCAGCAAAACTTAGTCCCTTAA 57.943 39.130 0.00 0.00 0.00 1.85
391 415 5.641155 ACCAGCAAAACTTAGTCCCTTAAT 58.359 37.500 0.00 0.00 0.00 1.40
392 416 6.075315 ACCAGCAAAACTTAGTCCCTTAATT 58.925 36.000 0.00 0.00 0.00 1.40
393 417 6.553476 ACCAGCAAAACTTAGTCCCTTAATTT 59.447 34.615 0.00 0.00 0.00 1.82
394 418 7.070696 ACCAGCAAAACTTAGTCCCTTAATTTT 59.929 33.333 0.00 0.00 0.00 1.82
395 419 7.931407 CCAGCAAAACTTAGTCCCTTAATTTTT 59.069 33.333 0.00 0.00 30.32 1.94
418 442 8.922931 TTTTAAACCGGATAAGTTTAGTTCCT 57.077 30.769 9.46 0.00 39.96 3.36
419 443 8.552083 TTTAAACCGGATAAGTTTAGTTCCTC 57.448 34.615 9.46 0.00 39.96 3.71
420 444 4.382345 ACCGGATAAGTTTAGTTCCTCG 57.618 45.455 9.46 0.00 0.00 4.63
421 445 3.766051 ACCGGATAAGTTTAGTTCCTCGT 59.234 43.478 9.46 0.00 0.00 4.18
422 446 4.110482 CCGGATAAGTTTAGTTCCTCGTG 58.890 47.826 0.00 0.00 0.00 4.35
423 447 3.550678 CGGATAAGTTTAGTTCCTCGTGC 59.449 47.826 0.00 0.00 0.00 5.34
424 448 4.501071 GGATAAGTTTAGTTCCTCGTGCA 58.499 43.478 0.00 0.00 0.00 4.57
425 449 4.933400 GGATAAGTTTAGTTCCTCGTGCAA 59.067 41.667 0.00 0.00 0.00 4.08
426 450 5.163884 GGATAAGTTTAGTTCCTCGTGCAAC 60.164 44.000 0.00 0.00 0.00 4.17
448 472 1.826709 GGCCTCCAAGGACTAGAGC 59.173 63.158 0.00 0.00 41.45 4.09
449 473 1.691195 GGCCTCCAAGGACTAGAGCC 61.691 65.000 0.00 0.00 41.45 4.70
450 474 0.978146 GCCTCCAAGGACTAGAGCCA 60.978 60.000 0.00 0.00 37.67 4.75
451 475 0.827368 CCTCCAAGGACTAGAGCCAC 59.173 60.000 0.00 0.00 37.67 5.01
452 476 0.827368 CTCCAAGGACTAGAGCCACC 59.173 60.000 0.00 0.00 0.00 4.61
453 477 0.413832 TCCAAGGACTAGAGCCACCT 59.586 55.000 0.00 0.00 0.00 4.00
454 478 0.827368 CCAAGGACTAGAGCCACCTC 59.173 60.000 0.00 0.00 38.42 3.85
455 479 0.457851 CAAGGACTAGAGCCACCTCG 59.542 60.000 0.00 0.00 43.05 4.63
456 480 1.324005 AAGGACTAGAGCCACCTCGC 61.324 60.000 0.00 0.00 43.05 5.03
457 481 2.787567 GGACTAGAGCCACCTCGCC 61.788 68.421 0.00 0.00 43.05 5.54
458 482 2.037367 ACTAGAGCCACCTCGCCA 59.963 61.111 0.00 0.00 43.05 5.69
459 483 2.010582 GACTAGAGCCACCTCGCCAG 62.011 65.000 0.00 0.00 43.05 4.85
460 484 1.754621 CTAGAGCCACCTCGCCAGA 60.755 63.158 0.00 0.00 43.05 3.86
461 485 1.733402 CTAGAGCCACCTCGCCAGAG 61.733 65.000 0.00 0.00 43.05 3.35
478 502 4.512914 GGCCTCCATGCCCAGACC 62.513 72.222 0.00 0.00 46.11 3.85
479 503 4.512914 GCCTCCATGCCCAGACCC 62.513 72.222 0.00 0.00 0.00 4.46
480 504 2.693864 CCTCCATGCCCAGACCCT 60.694 66.667 0.00 0.00 0.00 4.34
481 505 2.311854 CCTCCATGCCCAGACCCTT 61.312 63.158 0.00 0.00 0.00 3.95
482 506 1.225704 CTCCATGCCCAGACCCTTC 59.774 63.158 0.00 0.00 0.00 3.46
483 507 1.229951 TCCATGCCCAGACCCTTCT 60.230 57.895 0.00 0.00 0.00 2.85
484 508 1.225704 CCATGCCCAGACCCTTCTC 59.774 63.158 0.00 0.00 0.00 2.87
485 509 1.225704 CATGCCCAGACCCTTCTCC 59.774 63.158 0.00 0.00 0.00 3.71
486 510 1.083706 ATGCCCAGACCCTTCTCCT 59.916 57.895 0.00 0.00 0.00 3.69
487 511 1.277580 ATGCCCAGACCCTTCTCCTG 61.278 60.000 0.00 0.00 0.00 3.86
488 512 2.993853 CCCAGACCCTTCTCCTGC 59.006 66.667 0.00 0.00 0.00 4.85
489 513 1.614824 CCCAGACCCTTCTCCTGCT 60.615 63.158 0.00 0.00 0.00 4.24
490 514 1.601171 CCAGACCCTTCTCCTGCTG 59.399 63.158 0.00 0.00 0.00 4.41
491 515 1.078567 CAGACCCTTCTCCTGCTGC 60.079 63.158 0.00 0.00 0.00 5.25
492 516 1.229464 AGACCCTTCTCCTGCTGCT 60.229 57.895 0.00 0.00 0.00 4.24
493 517 1.078567 GACCCTTCTCCTGCTGCTG 60.079 63.158 0.00 0.00 0.00 4.41
494 518 2.271497 CCCTTCTCCTGCTGCTGG 59.729 66.667 18.44 18.44 0.00 4.85
495 519 2.296365 CCCTTCTCCTGCTGCTGGA 61.296 63.158 24.22 24.22 0.00 3.86
496 520 1.078567 CCTTCTCCTGCTGCTGGAC 60.079 63.158 22.44 0.00 0.00 4.02
497 521 1.447489 CTTCTCCTGCTGCTGGACG 60.447 63.158 22.44 17.74 0.00 4.79
498 522 3.596066 TTCTCCTGCTGCTGGACGC 62.596 63.158 22.44 0.00 39.77 5.19
508 532 3.716006 CTGGACGCGCACCAACTG 61.716 66.667 22.30 10.53 36.95 3.16
511 535 3.649986 GACGCGCACCAACTGCTT 61.650 61.111 5.73 0.00 44.64 3.91
512 536 3.862063 GACGCGCACCAACTGCTTG 62.862 63.158 5.73 0.00 44.64 4.01
513 537 3.648982 CGCGCACCAACTGCTTGA 61.649 61.111 8.75 0.00 44.64 3.02
514 538 2.956987 GCGCACCAACTGCTTGAT 59.043 55.556 0.30 0.00 44.64 2.57
515 539 1.443194 GCGCACCAACTGCTTGATG 60.443 57.895 0.30 0.00 44.64 3.07
516 540 1.855213 GCGCACCAACTGCTTGATGA 61.855 55.000 0.30 0.00 44.64 2.92
517 541 0.592637 CGCACCAACTGCTTGATGAA 59.407 50.000 0.00 0.00 44.64 2.57
518 542 1.001487 CGCACCAACTGCTTGATGAAA 60.001 47.619 0.00 0.00 44.64 2.69
519 543 2.352030 CGCACCAACTGCTTGATGAAAT 60.352 45.455 0.00 0.00 44.64 2.17
520 544 2.991190 GCACCAACTGCTTGATGAAATG 59.009 45.455 0.00 0.00 43.33 2.32
521 545 2.991190 CACCAACTGCTTGATGAAATGC 59.009 45.455 0.00 0.00 0.00 3.56
522 546 2.028748 ACCAACTGCTTGATGAAATGCC 60.029 45.455 0.00 0.00 0.00 4.40
523 547 2.232941 CCAACTGCTTGATGAAATGCCT 59.767 45.455 0.00 0.00 0.00 4.75
524 548 3.444742 CCAACTGCTTGATGAAATGCCTA 59.555 43.478 0.00 0.00 0.00 3.93
525 549 4.439700 CCAACTGCTTGATGAAATGCCTAG 60.440 45.833 0.00 0.00 0.00 3.02
526 550 2.686915 ACTGCTTGATGAAATGCCTAGC 59.313 45.455 0.00 0.00 0.00 3.42
527 551 2.026641 TGCTTGATGAAATGCCTAGCC 58.973 47.619 0.00 0.00 0.00 3.93
528 552 2.026641 GCTTGATGAAATGCCTAGCCA 58.973 47.619 0.00 0.00 0.00 4.75
529 553 2.428171 GCTTGATGAAATGCCTAGCCAA 59.572 45.455 0.00 0.00 0.00 4.52
530 554 3.490419 GCTTGATGAAATGCCTAGCCAAG 60.490 47.826 0.00 0.00 34.55 3.61
531 555 3.370840 TGATGAAATGCCTAGCCAAGT 57.629 42.857 0.00 0.00 0.00 3.16
532 556 3.700538 TGATGAAATGCCTAGCCAAGTT 58.299 40.909 0.00 0.00 0.00 2.66
533 557 3.696051 TGATGAAATGCCTAGCCAAGTTC 59.304 43.478 0.00 0.00 0.00 3.01
534 558 3.439857 TGAAATGCCTAGCCAAGTTCT 57.560 42.857 3.22 0.00 0.00 3.01
535 559 4.568072 TGAAATGCCTAGCCAAGTTCTA 57.432 40.909 3.22 0.00 0.00 2.10
536 560 4.917385 TGAAATGCCTAGCCAAGTTCTAA 58.083 39.130 3.22 0.00 0.00 2.10
537 561 5.509498 TGAAATGCCTAGCCAAGTTCTAAT 58.491 37.500 3.22 0.00 0.00 1.73
538 562 5.357878 TGAAATGCCTAGCCAAGTTCTAATG 59.642 40.000 3.22 0.00 0.00 1.90
539 563 4.778213 ATGCCTAGCCAAGTTCTAATGA 57.222 40.909 0.00 0.00 0.00 2.57
540 564 4.778213 TGCCTAGCCAAGTTCTAATGAT 57.222 40.909 0.00 0.00 0.00 2.45
541 565 5.887214 TGCCTAGCCAAGTTCTAATGATA 57.113 39.130 0.00 0.00 0.00 2.15
542 566 6.247229 TGCCTAGCCAAGTTCTAATGATAA 57.753 37.500 0.00 0.00 0.00 1.75
543 567 6.291377 TGCCTAGCCAAGTTCTAATGATAAG 58.709 40.000 0.00 0.00 0.00 1.73
544 568 5.703130 GCCTAGCCAAGTTCTAATGATAAGG 59.297 44.000 0.00 0.00 0.00 2.69
545 569 6.464465 GCCTAGCCAAGTTCTAATGATAAGGA 60.464 42.308 0.00 0.00 0.00 3.36
546 570 7.509546 CCTAGCCAAGTTCTAATGATAAGGAA 58.490 38.462 0.00 0.00 0.00 3.36
547 571 7.442666 CCTAGCCAAGTTCTAATGATAAGGAAC 59.557 40.741 0.00 0.00 38.51 3.62
548 572 5.817816 AGCCAAGTTCTAATGATAAGGAACG 59.182 40.000 0.00 0.00 41.72 3.95
549 573 5.815740 GCCAAGTTCTAATGATAAGGAACGA 59.184 40.000 0.00 0.00 41.72 3.85
550 574 6.018669 GCCAAGTTCTAATGATAAGGAACGAG 60.019 42.308 0.00 0.00 41.72 4.18
551 575 6.480320 CCAAGTTCTAATGATAAGGAACGAGG 59.520 42.308 0.00 0.00 41.72 4.63
552 576 6.163135 AGTTCTAATGATAAGGAACGAGGG 57.837 41.667 0.00 0.00 41.72 4.30
553 577 5.897824 AGTTCTAATGATAAGGAACGAGGGA 59.102 40.000 0.00 0.00 41.72 4.20
554 578 5.786264 TCTAATGATAAGGAACGAGGGAC 57.214 43.478 0.00 0.00 0.00 4.46
555 579 8.294538 AGTTCTAATGATAAGGAACGAGGGACT 61.295 40.741 0.00 0.00 41.72 3.85
556 580 6.607970 TCTAATGATAAGGAACGAGGGACTA 58.392 40.000 0.00 0.00 41.55 2.59
557 581 7.064866 TCTAATGATAAGGAACGAGGGACTAA 58.935 38.462 0.00 0.00 41.55 2.24
558 582 6.555463 AATGATAAGGAACGAGGGACTAAA 57.445 37.500 0.00 0.00 41.55 1.85
559 583 6.555463 ATGATAAGGAACGAGGGACTAAAA 57.445 37.500 0.00 0.00 41.55 1.52
560 584 6.555463 TGATAAGGAACGAGGGACTAAAAT 57.445 37.500 0.00 0.00 41.55 1.82
561 585 6.954232 TGATAAGGAACGAGGGACTAAAATT 58.046 36.000 0.00 0.00 41.55 1.82
562 586 8.081517 TGATAAGGAACGAGGGACTAAAATTA 57.918 34.615 0.00 0.00 41.55 1.40
563 587 8.711170 TGATAAGGAACGAGGGACTAAAATTAT 58.289 33.333 0.00 0.00 41.55 1.28
564 588 9.205719 GATAAGGAACGAGGGACTAAAATTATC 57.794 37.037 0.00 0.00 41.55 1.75
565 589 6.809976 AGGAACGAGGGACTAAAATTATCT 57.190 37.500 0.00 0.00 41.55 1.98
566 590 6.583562 AGGAACGAGGGACTAAAATTATCTG 58.416 40.000 0.00 0.00 41.55 2.90
567 591 5.758784 GGAACGAGGGACTAAAATTATCTGG 59.241 44.000 0.00 0.00 41.55 3.86
568 592 5.952347 ACGAGGGACTAAAATTATCTGGT 57.048 39.130 0.00 0.00 41.55 4.00
569 593 6.309389 ACGAGGGACTAAAATTATCTGGTT 57.691 37.500 0.00 0.00 41.55 3.67
570 594 6.718294 ACGAGGGACTAAAATTATCTGGTTT 58.282 36.000 0.00 0.00 41.55 3.27
571 595 6.598064 ACGAGGGACTAAAATTATCTGGTTTG 59.402 38.462 0.00 0.00 41.55 2.93
572 596 6.821665 CGAGGGACTAAAATTATCTGGTTTGA 59.178 38.462 0.00 0.00 41.55 2.69
573 597 7.011482 CGAGGGACTAAAATTATCTGGTTTGAG 59.989 40.741 0.00 0.00 41.55 3.02
574 598 7.928873 AGGGACTAAAATTATCTGGTTTGAGA 58.071 34.615 0.00 0.00 36.02 3.27
575 599 8.390921 AGGGACTAAAATTATCTGGTTTGAGAA 58.609 33.333 0.00 0.00 36.02 2.87
576 600 9.020731 GGGACTAAAATTATCTGGTTTGAGAAA 57.979 33.333 0.00 0.00 0.00 2.52
582 606 9.933723 AAAATTATCTGGTTTGAGAAATTGAGG 57.066 29.630 0.00 0.00 0.00 3.86
583 607 7.651027 ATTATCTGGTTTGAGAAATTGAGGG 57.349 36.000 0.00 0.00 0.00 4.30
584 608 3.766545 TCTGGTTTGAGAAATTGAGGGG 58.233 45.455 0.00 0.00 0.00 4.79
585 609 2.232208 CTGGTTTGAGAAATTGAGGGGC 59.768 50.000 0.00 0.00 0.00 5.80
586 610 2.158325 TGGTTTGAGAAATTGAGGGGCT 60.158 45.455 0.00 0.00 0.00 5.19
587 611 3.075283 TGGTTTGAGAAATTGAGGGGCTA 59.925 43.478 0.00 0.00 0.00 3.93
588 612 4.086457 GGTTTGAGAAATTGAGGGGCTAA 58.914 43.478 0.00 0.00 0.00 3.09
589 613 4.526650 GGTTTGAGAAATTGAGGGGCTAAA 59.473 41.667 0.00 0.00 0.00 1.85
590 614 5.011635 GGTTTGAGAAATTGAGGGGCTAAAA 59.988 40.000 0.00 0.00 0.00 1.52
591 615 6.295859 GGTTTGAGAAATTGAGGGGCTAAAAT 60.296 38.462 0.00 0.00 0.00 1.82
592 616 6.933514 TTGAGAAATTGAGGGGCTAAAATT 57.066 33.333 0.00 0.00 0.00 1.82
593 617 8.311109 GTTTGAGAAATTGAGGGGCTAAAATTA 58.689 33.333 0.00 0.00 0.00 1.40
594 618 8.608185 TTGAGAAATTGAGGGGCTAAAATTAT 57.392 30.769 0.00 0.00 0.00 1.28
595 619 8.237811 TGAGAAATTGAGGGGCTAAAATTATC 57.762 34.615 0.00 0.00 0.00 1.75
596 620 8.061304 TGAGAAATTGAGGGGCTAAAATTATCT 58.939 33.333 0.00 0.00 0.00 1.98
597 621 8.242729 AGAAATTGAGGGGCTAAAATTATCTG 57.757 34.615 0.00 0.00 0.00 2.90
598 622 6.983906 AATTGAGGGGCTAAAATTATCTGG 57.016 37.500 0.00 0.00 0.00 3.86
599 623 5.466127 TTGAGGGGCTAAAATTATCTGGT 57.534 39.130 0.00 0.00 0.00 4.00
600 624 5.466127 TGAGGGGCTAAAATTATCTGGTT 57.534 39.130 0.00 0.00 0.00 3.67
601 625 5.837829 TGAGGGGCTAAAATTATCTGGTTT 58.162 37.500 0.00 0.00 0.00 3.27
602 626 5.656416 TGAGGGGCTAAAATTATCTGGTTTG 59.344 40.000 0.00 0.00 0.00 2.93
603 627 5.837829 AGGGGCTAAAATTATCTGGTTTGA 58.162 37.500 0.00 0.00 0.00 2.69
604 628 5.893824 AGGGGCTAAAATTATCTGGTTTGAG 59.106 40.000 0.00 0.00 0.00 3.02
605 629 5.891551 GGGGCTAAAATTATCTGGTTTGAGA 59.108 40.000 0.00 0.00 0.00 3.27
606 630 6.379988 GGGGCTAAAATTATCTGGTTTGAGAA 59.620 38.462 0.00 0.00 0.00 2.87
607 631 7.093509 GGGGCTAAAATTATCTGGTTTGAGAAA 60.094 37.037 0.00 0.00 0.00 2.52
608 632 8.478066 GGGCTAAAATTATCTGGTTTGAGAAAT 58.522 33.333 0.00 0.00 0.00 2.17
609 633 9.875691 GGCTAAAATTATCTGGTTTGAGAAATT 57.124 29.630 0.00 0.00 0.00 1.82
614 638 9.933723 AAATTATCTGGTTTGAGAAATTGAAGG 57.066 29.630 0.00 0.00 0.00 3.46
615 639 8.884124 ATTATCTGGTTTGAGAAATTGAAGGA 57.116 30.769 0.00 0.00 0.00 3.36
616 640 6.581171 ATCTGGTTTGAGAAATTGAAGGAC 57.419 37.500 0.00 0.00 0.00 3.85
617 641 5.694995 TCTGGTTTGAGAAATTGAAGGACT 58.305 37.500 0.00 0.00 0.00 3.85
618 642 6.837312 TCTGGTTTGAGAAATTGAAGGACTA 58.163 36.000 0.00 0.00 0.00 2.59
619 643 7.287061 TCTGGTTTGAGAAATTGAAGGACTAA 58.713 34.615 0.00 0.00 0.00 2.24
620 644 7.445402 TCTGGTTTGAGAAATTGAAGGACTAAG 59.555 37.037 0.00 0.00 0.00 2.18
621 645 6.490040 TGGTTTGAGAAATTGAAGGACTAAGG 59.510 38.462 0.00 0.00 0.00 2.69
622 646 6.490381 GGTTTGAGAAATTGAAGGACTAAGGT 59.510 38.462 0.00 0.00 0.00 3.50
623 647 7.014326 GGTTTGAGAAATTGAAGGACTAAGGTT 59.986 37.037 0.00 0.00 0.00 3.50
624 648 8.414003 GTTTGAGAAATTGAAGGACTAAGGTTT 58.586 33.333 0.00 0.00 0.00 3.27
625 649 7.510549 TGAGAAATTGAAGGACTAAGGTTTG 57.489 36.000 0.00 0.00 0.00 2.93
626 650 6.016276 TGAGAAATTGAAGGACTAAGGTTTGC 60.016 38.462 0.00 0.00 0.00 3.68
627 651 6.071320 AGAAATTGAAGGACTAAGGTTTGCT 58.929 36.000 0.00 0.00 0.00 3.91
628 652 5.712152 AATTGAAGGACTAAGGTTTGCTG 57.288 39.130 0.00 0.00 0.00 4.41
629 653 3.140325 TGAAGGACTAAGGTTTGCTGG 57.860 47.619 0.00 0.00 0.00 4.85
630 654 2.441750 TGAAGGACTAAGGTTTGCTGGT 59.558 45.455 0.00 0.00 0.00 4.00
631 655 3.117663 TGAAGGACTAAGGTTTGCTGGTT 60.118 43.478 0.00 0.00 0.00 3.67
632 656 3.595190 AGGACTAAGGTTTGCTGGTTT 57.405 42.857 0.00 0.00 0.00 3.27
633 657 3.910989 AGGACTAAGGTTTGCTGGTTTT 58.089 40.909 0.00 0.00 0.00 2.43
634 658 3.636764 AGGACTAAGGTTTGCTGGTTTTG 59.363 43.478 0.00 0.00 0.00 2.44
635 659 3.634910 GGACTAAGGTTTGCTGGTTTTGA 59.365 43.478 0.00 0.00 0.00 2.69
636 660 4.098807 GGACTAAGGTTTGCTGGTTTTGAA 59.901 41.667 0.00 0.00 0.00 2.69
637 661 5.262588 ACTAAGGTTTGCTGGTTTTGAAG 57.737 39.130 0.00 0.00 0.00 3.02
638 662 4.709886 ACTAAGGTTTGCTGGTTTTGAAGT 59.290 37.500 0.00 0.00 0.00 3.01
639 663 4.551702 AAGGTTTGCTGGTTTTGAAGTT 57.448 36.364 0.00 0.00 0.00 2.66
640 664 4.551702 AGGTTTGCTGGTTTTGAAGTTT 57.448 36.364 0.00 0.00 0.00 2.66
641 665 5.669164 AGGTTTGCTGGTTTTGAAGTTTA 57.331 34.783 0.00 0.00 0.00 2.01
642 666 5.660460 AGGTTTGCTGGTTTTGAAGTTTAG 58.340 37.500 0.00 0.00 0.00 1.85
643 667 4.808895 GGTTTGCTGGTTTTGAAGTTTAGG 59.191 41.667 0.00 0.00 0.00 2.69
644 668 4.664150 TTGCTGGTTTTGAAGTTTAGGG 57.336 40.909 0.00 0.00 0.00 3.53
645 669 2.962421 TGCTGGTTTTGAAGTTTAGGGG 59.038 45.455 0.00 0.00 0.00 4.79
646 670 2.288825 GCTGGTTTTGAAGTTTAGGGGC 60.289 50.000 0.00 0.00 0.00 5.80
647 671 2.299013 CTGGTTTTGAAGTTTAGGGGCC 59.701 50.000 0.00 0.00 0.00 5.80
648 672 2.321719 GGTTTTGAAGTTTAGGGGCCA 58.678 47.619 4.39 0.00 0.00 5.36
649 673 2.903784 GGTTTTGAAGTTTAGGGGCCAT 59.096 45.455 4.39 0.00 0.00 4.40
650 674 3.326588 GGTTTTGAAGTTTAGGGGCCATT 59.673 43.478 4.39 0.00 0.00 3.16
651 675 4.202419 GGTTTTGAAGTTTAGGGGCCATTT 60.202 41.667 4.39 0.00 0.00 2.32
652 676 4.882842 TTTGAAGTTTAGGGGCCATTTC 57.117 40.909 4.39 0.00 0.00 2.17
653 677 3.825908 TGAAGTTTAGGGGCCATTTCT 57.174 42.857 4.39 0.00 0.00 2.52
654 678 4.938575 TGAAGTTTAGGGGCCATTTCTA 57.061 40.909 4.39 0.00 0.00 2.10
655 679 5.466127 TGAAGTTTAGGGGCCATTTCTAT 57.534 39.130 4.39 0.00 0.00 1.98
656 680 6.584471 TGAAGTTTAGGGGCCATTTCTATA 57.416 37.500 4.39 0.00 0.00 1.31
657 681 6.362248 TGAAGTTTAGGGGCCATTTCTATAC 58.638 40.000 4.39 6.17 0.00 1.47
658 682 6.159751 TGAAGTTTAGGGGCCATTTCTATACT 59.840 38.462 4.39 8.26 30.47 2.12
659 683 6.592207 AGTTTAGGGGCCATTTCTATACTT 57.408 37.500 4.39 0.00 0.00 2.24
660 684 6.981737 AGTTTAGGGGCCATTTCTATACTTT 58.018 36.000 4.39 0.00 0.00 2.66
661 685 7.419203 AGTTTAGGGGCCATTTCTATACTTTT 58.581 34.615 4.39 0.00 0.00 2.27
662 686 7.342026 AGTTTAGGGGCCATTTCTATACTTTTG 59.658 37.037 4.39 0.00 0.00 2.44
663 687 5.466127 AGGGGCCATTTCTATACTTTTGA 57.534 39.130 4.39 0.00 0.00 2.69
664 688 5.837829 AGGGGCCATTTCTATACTTTTGAA 58.162 37.500 4.39 0.00 0.00 2.69
665 689 6.260663 AGGGGCCATTTCTATACTTTTGAAA 58.739 36.000 4.39 0.00 34.75 2.69
666 690 6.902974 AGGGGCCATTTCTATACTTTTGAAAT 59.097 34.615 4.39 0.00 39.93 2.17
667 691 8.065007 AGGGGCCATTTCTATACTTTTGAAATA 58.935 33.333 4.39 0.00 38.05 1.40
668 692 8.700973 GGGGCCATTTCTATACTTTTGAAATAA 58.299 33.333 4.39 0.00 38.05 1.40
680 704 7.595819 ACTTTTGAAATAATTGAGGGACACA 57.404 32.000 0.00 0.00 0.00 3.72
681 705 8.017418 ACTTTTGAAATAATTGAGGGACACAA 57.983 30.769 0.00 0.00 43.97 3.33
682 706 8.482128 ACTTTTGAAATAATTGAGGGACACAAA 58.518 29.630 0.00 0.00 42.96 2.83
683 707 9.323985 CTTTTGAAATAATTGAGGGACACAAAA 57.676 29.630 0.00 0.00 42.96 2.44
684 708 9.844257 TTTTGAAATAATTGAGGGACACAAAAT 57.156 25.926 0.00 0.00 42.96 1.82
695 719 8.073467 TGAGGGACACAAAATATAATTTTCCC 57.927 34.615 11.40 11.40 37.23 3.97
696 720 7.676043 TGAGGGACACAAAATATAATTTTCCCA 59.324 33.333 17.96 2.59 38.50 4.37
697 721 8.622572 AGGGACACAAAATATAATTTTCCCAT 57.377 30.769 17.96 6.20 38.50 4.00
935 991 5.715279 CCTGCACTATTATACCTACCTAGCA 59.285 44.000 0.00 0.00 0.00 3.49
981 1052 2.109128 CCCAGTCCTCCTAGCTAGATCA 59.891 54.545 22.70 4.69 0.00 2.92
1013 1090 4.760047 GGTCATGGCGGCGACAGT 62.760 66.667 24.18 6.73 33.66 3.55
1188 1271 3.973267 GAAGCTCTTCGTCGCCGCT 62.973 63.158 0.00 0.00 0.00 5.52
1272 1355 0.451783 CCGCATCAGCCTGTAAAACC 59.548 55.000 0.00 0.00 37.52 3.27
1423 1528 6.158598 GCTTGCTCATTAGGAAAATGTTGAA 58.841 36.000 0.00 0.00 32.08 2.69
1463 1615 6.476380 TGCTGATGAATTTGTTGTCTTGTTTC 59.524 34.615 0.00 0.00 0.00 2.78
1555 1736 3.458163 GAGTGGCCATCGGACCGA 61.458 66.667 20.85 20.85 41.13 4.69
1622 1830 1.453155 AATCAGTTAACCAGGCGCAG 58.547 50.000 10.83 0.00 0.00 5.18
1624 1832 0.602638 TCAGTTAACCAGGCGCAGTG 60.603 55.000 10.83 5.77 0.00 3.66
1625 1833 0.884704 CAGTTAACCAGGCGCAGTGT 60.885 55.000 10.83 0.00 0.00 3.55
1626 1834 0.884704 AGTTAACCAGGCGCAGTGTG 60.885 55.000 10.83 0.00 0.00 3.82
1627 1835 1.599518 TTAACCAGGCGCAGTGTGG 60.600 57.895 10.83 12.75 38.27 4.17
1628 1836 3.545124 TAACCAGGCGCAGTGTGGG 62.545 63.158 10.83 3.03 36.91 4.61
1632 1971 1.377202 CAGGCGCAGTGTGGGTTAT 60.377 57.895 10.83 0.00 32.36 1.89
1648 1987 7.012989 GTGTGGGTTATTCTTGTATTATGGGTC 59.987 40.741 0.00 0.00 0.00 4.46
1667 2006 3.064682 GGTCGGTTTTTGCTTGCAATTTT 59.935 39.130 8.93 0.00 0.00 1.82
1668 2007 4.438065 GGTCGGTTTTTGCTTGCAATTTTT 60.438 37.500 8.93 0.00 0.00 1.94
1669 2008 5.220681 GGTCGGTTTTTGCTTGCAATTTTTA 60.221 36.000 8.93 0.00 0.00 1.52
1670 2009 5.675012 GTCGGTTTTTGCTTGCAATTTTTAC 59.325 36.000 8.93 3.80 0.00 2.01
1678 2579 6.012658 TGCTTGCAATTTTTACTGGACTAG 57.987 37.500 0.00 0.00 0.00 2.57
1699 2769 2.975799 TTTCTTGCCGGCCGTGAC 60.976 61.111 26.77 13.87 0.00 3.67
1710 2780 1.021390 GGCCGTGACAAGTGGAGATG 61.021 60.000 0.00 0.00 0.00 2.90
1752 3254 2.286559 CGTCGATCGTAGGCAAGCG 61.287 63.158 15.94 4.69 34.52 4.68
1821 3808 4.565652 GGATCCATGATAATACCTGGCGTT 60.566 45.833 6.95 0.00 0.00 4.84
1854 3892 3.848272 TCGGAAATTCTTTGGCATGAC 57.152 42.857 0.00 0.00 0.00 3.06
1859 3897 5.410924 GGAAATTCTTTGGCATGACTAACC 58.589 41.667 0.00 0.00 0.00 2.85
1863 3901 3.942829 TCTTTGGCATGACTAACCAGAG 58.057 45.455 0.00 0.14 37.10 3.35
1911 3959 2.432628 GAACGTGAGGAGGCGTGG 60.433 66.667 0.00 0.00 41.42 4.94
1935 3987 0.470341 GGGTTAGGTGGCTGGATCTC 59.530 60.000 0.00 0.00 0.00 2.75
1959 4555 5.067413 CCCTAGTCAACGCTTCACTTATCTA 59.933 44.000 0.00 0.00 0.00 1.98
2011 4617 7.616313 AGAAAGGAAAAACCAAACATTACACA 58.384 30.769 0.00 0.00 42.04 3.72
2023 4629 6.148150 CCAAACATTACACACTACGTATGGTT 59.852 38.462 0.00 0.00 0.00 3.67
2035 4649 2.351418 ACGTATGGTTTGACATGCATCG 59.649 45.455 0.00 0.00 33.73 3.84
2038 4652 4.260743 CGTATGGTTTGACATGCATCGATT 60.261 41.667 0.00 0.00 33.73 3.34
2047 4661 1.607148 CATGCATCGATTGTGCTGGAT 59.393 47.619 10.58 0.00 42.92 3.41
2051 4665 1.600957 CATCGATTGTGCTGGATCCAC 59.399 52.381 11.44 8.83 0.00 4.02
2054 4668 1.098050 GATTGTGCTGGATCCACACC 58.902 55.000 29.06 18.09 42.39 4.16
2074 6081 2.594592 GAGCAGCACGTGGGGTTT 60.595 61.111 18.88 0.00 0.00 3.27
2075 6082 2.906897 AGCAGCACGTGGGGTTTG 60.907 61.111 18.88 0.00 0.00 2.93
2076 6083 3.977244 GCAGCACGTGGGGTTTGG 61.977 66.667 18.88 0.00 0.00 3.28
2077 6084 2.518349 CAGCACGTGGGGTTTGGT 60.518 61.111 18.88 0.00 0.00 3.67
2078 6085 1.228003 CAGCACGTGGGGTTTGGTA 60.228 57.895 18.88 0.00 0.00 3.25
2079 6086 1.228033 AGCACGTGGGGTTTGGTAC 60.228 57.895 18.88 0.00 0.00 3.34
2080 6087 1.228033 GCACGTGGGGTTTGGTACT 60.228 57.895 18.88 0.00 0.00 2.73
2081 6088 0.035176 GCACGTGGGGTTTGGTACTA 59.965 55.000 18.88 0.00 0.00 1.82
2082 6089 1.799544 CACGTGGGGTTTGGTACTAC 58.200 55.000 7.95 0.00 0.00 2.73
2083 6090 1.345415 CACGTGGGGTTTGGTACTACT 59.655 52.381 7.95 0.00 0.00 2.57
2084 6091 1.620323 ACGTGGGGTTTGGTACTACTC 59.380 52.381 0.00 0.00 0.00 2.59
2085 6092 1.066645 CGTGGGGTTTGGTACTACTCC 60.067 57.143 5.58 5.58 35.34 3.85
2086 6093 2.263545 GTGGGGTTTGGTACTACTCCT 58.736 52.381 11.67 0.00 35.70 3.69
2087 6094 2.641321 GTGGGGTTTGGTACTACTCCTT 59.359 50.000 11.67 0.00 35.70 3.36
2088 6095 2.908351 TGGGGTTTGGTACTACTCCTTC 59.092 50.000 11.67 2.00 35.70 3.46
2089 6096 2.908351 GGGGTTTGGTACTACTCCTTCA 59.092 50.000 5.36 0.00 32.74 3.02
2099 6106 0.450583 TACTCCTTCAGTAGTGCGCG 59.549 55.000 0.00 0.00 36.43 6.86
2102 6109 2.432456 CTTCAGTAGTGCGCGGCA 60.432 61.111 8.83 3.20 35.60 5.69
2215 6586 7.422399 TGGTAAAAGTTTAGCATGTTTGACTC 58.578 34.615 10.76 0.00 43.69 3.36
2228 6599 7.392673 AGCATGTTTGACTCAGAACAAATCTAT 59.607 33.333 9.43 0.00 39.03 1.98
2274 6645 4.593634 AGAGGGTATTACTATGTTGGAGGC 59.406 45.833 0.00 0.00 0.00 4.70
2277 6648 5.063880 GGGTATTACTATGTTGGAGGCTTG 58.936 45.833 0.00 0.00 0.00 4.01
2279 6650 5.163237 GGTATTACTATGTTGGAGGCTTGGA 60.163 44.000 0.00 0.00 0.00 3.53
2280 6651 4.487714 TTACTATGTTGGAGGCTTGGAG 57.512 45.455 0.00 0.00 0.00 3.86
2281 6652 1.561542 ACTATGTTGGAGGCTTGGAGG 59.438 52.381 0.00 0.00 0.00 4.30
2282 6653 1.839994 CTATGTTGGAGGCTTGGAGGA 59.160 52.381 0.00 0.00 0.00 3.71
2283 6654 0.329596 ATGTTGGAGGCTTGGAGGAC 59.670 55.000 0.00 0.00 0.00 3.85
2311 6682 4.507756 TCCTGAATAAATCAATCACGAGCG 59.492 41.667 0.00 0.00 37.67 5.03
2314 6685 3.867055 ATAAATCAATCACGAGCGCTG 57.133 42.857 18.48 10.31 0.00 5.18
2390 7582 9.014297 AGTTAAATCAGACTTGGTTAATTCTGG 57.986 33.333 7.31 0.00 41.41 3.86
2393 7585 4.906618 TCAGACTTGGTTAATTCTGGGAC 58.093 43.478 7.31 0.00 41.41 4.46
2550 7938 5.925969 ACAATTTTGCCAGATAAAAACCGAG 59.074 36.000 0.00 0.00 31.54 4.63
2648 8036 2.761208 CAGGTACGAGGTCAGAGGAAAT 59.239 50.000 0.00 0.00 0.00 2.17
2699 8087 0.833287 AAGGGCTGATGCGTGACTAT 59.167 50.000 0.00 0.00 40.82 2.12
2712 8100 1.218047 GACTATGTGCGGGAGTGCA 59.782 57.895 0.00 0.00 43.95 4.57
2720 8108 0.537143 TGCGGGAGTGCAAGTTCATT 60.537 50.000 0.00 0.00 43.02 2.57
3075 8482 6.448369 TCATAGACCCCTTTCAAGAAAAGA 57.552 37.500 0.00 0.00 46.18 2.52
3101 8590 0.973632 GGTTAAACCCCAGGCCTTTG 59.026 55.000 0.00 0.00 30.04 2.77
3151 8721 5.764686 AGCATGTTGAGTGAGTGATTTGTTA 59.235 36.000 0.00 0.00 0.00 2.41
3348 8926 7.145932 TGCTCTTTTATTTAGTTGCTTCTCC 57.854 36.000 0.00 0.00 0.00 3.71
3415 9011 0.036388 ACTGGTGCATGGTTAGGTCG 60.036 55.000 0.00 0.00 0.00 4.79
3593 9203 3.374220 TCTGCTTGTTGCCTGAAATTG 57.626 42.857 0.00 0.00 42.00 2.32
3597 9207 5.243507 TCTGCTTGTTGCCTGAAATTGAATA 59.756 36.000 0.00 0.00 42.00 1.75
3819 10816 0.719465 GATCACCAAGGTAACACGCG 59.281 55.000 3.53 3.53 41.41 6.01
3871 10882 9.344772 TGTTTATTACATTCAGTTAACACCAGT 57.655 29.630 8.61 2.53 0.00 4.00
3878 10889 6.775629 ACATTCAGTTAACACCAGTAAACCAT 59.224 34.615 8.61 0.00 0.00 3.55
4219 11236 6.224584 TGTATGTTGACTACCGATTTGAACA 58.775 36.000 0.00 0.00 0.00 3.18
4427 11450 2.435693 GGACACGCCCTCCTAGCAT 61.436 63.158 0.00 0.00 0.00 3.79
4478 11512 2.421775 TGACACATGTTTGCGACAAACT 59.578 40.909 25.12 14.36 42.62 2.66
4555 11597 0.605589 AAGAACTTTTCCTCGCCCCG 60.606 55.000 0.00 0.00 0.00 5.73
4591 11637 4.161189 TCCAACCTTCAATTCTTTGTTGCA 59.839 37.500 0.00 0.00 34.32 4.08
4658 11717 3.678072 TGCAGTATTTACAGAAGCGTCAC 59.322 43.478 1.61 0.00 0.00 3.67
4705 11765 8.043710 ACCTGGAAGAATAACAGAAGATGTAAG 58.956 37.037 0.00 0.00 37.34 2.34
4863 11939 8.239314 AGAACATGTAAATGTACATTTGCTCAG 58.761 33.333 34.37 27.61 46.74 3.35
4879 11959 3.871006 TGCTCAGCACCATTTATAACTCG 59.129 43.478 0.00 0.00 31.71 4.18
4912 12000 7.492524 TCAGACAGACCTTATAATGCAGTAAG 58.507 38.462 0.00 3.82 0.00 2.34
4983 12072 6.992063 TTGGCAAGCAAAGAAATTTTTGTA 57.008 29.167 0.00 0.00 39.62 2.41
5052 12146 1.500108 CGTTTATATGCGCGGGGTAA 58.500 50.000 8.83 0.00 0.00 2.85
5186 12909 3.336715 CTCGGCATCGACGTGACCA 62.337 63.158 0.00 0.00 40.88 4.02
5194 12917 3.308595 GCATCGACGTGACCATGAAATTA 59.691 43.478 0.00 0.00 0.00 1.40
5264 12990 6.707161 TGTAAACTCAGTAAACATAAACCGCT 59.293 34.615 0.00 0.00 0.00 5.52
5307 13033 0.923729 TTGGTGGGGCCCATATGTCT 60.924 55.000 31.48 0.00 35.28 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.449227 CGCTAGCCACCCGTCTCA 61.449 66.667 9.66 0.00 0.00 3.27
10 11 0.468648 AATCTTACCGCTAGCCACCC 59.531 55.000 9.66 0.00 0.00 4.61
34 35 3.356639 GACACGATGCTGCCGAGGA 62.357 63.158 5.34 0.00 0.00 3.71
37 38 3.743636 TCGACACGATGCTGCCGA 61.744 61.111 5.34 0.00 0.00 5.54
49 50 1.594833 GTGGCATACCCAGTCGACA 59.405 57.895 19.50 0.00 46.54 4.35
50 51 1.153429 GGTGGCATACCCAGTCGAC 60.153 63.158 7.70 7.70 46.54 4.20
108 109 2.844839 GGGCGGGCTGTAGGAGAT 60.845 66.667 0.26 0.00 0.00 2.75
299 323 8.905850 GGGACGAAAAATATACTTTTCCCATTA 58.094 33.333 12.45 0.00 40.64 1.90
300 324 7.618117 AGGGACGAAAAATATACTTTTCCCATT 59.382 33.333 14.39 3.08 40.64 3.16
301 325 7.123383 AGGGACGAAAAATATACTTTTCCCAT 58.877 34.615 14.39 6.79 40.64 4.00
302 326 6.486941 AGGGACGAAAAATATACTTTTCCCA 58.513 36.000 14.39 0.00 40.64 4.37
303 327 6.238293 CGAGGGACGAAAAATATACTTTTCCC 60.238 42.308 12.45 9.55 45.77 3.97
304 328 6.238293 CCGAGGGACGAAAAATATACTTTTCC 60.238 42.308 12.45 1.47 45.77 3.13
305 329 6.314648 ACCGAGGGACGAAAAATATACTTTTC 59.685 38.462 8.93 8.93 45.77 2.29
306 330 6.175471 ACCGAGGGACGAAAAATATACTTTT 58.825 36.000 0.00 0.00 45.77 2.27
307 331 5.737860 ACCGAGGGACGAAAAATATACTTT 58.262 37.500 0.00 0.00 45.77 2.66
308 332 5.349061 ACCGAGGGACGAAAAATATACTT 57.651 39.130 0.00 0.00 45.77 2.24
309 333 5.349061 AACCGAGGGACGAAAAATATACT 57.651 39.130 0.00 0.00 45.77 2.12
310 334 7.719778 AATAACCGAGGGACGAAAAATATAC 57.280 36.000 0.00 0.00 45.77 1.47
311 335 8.735692 AAAATAACCGAGGGACGAAAAATATA 57.264 30.769 0.00 0.00 45.77 0.86
312 336 7.634671 AAAATAACCGAGGGACGAAAAATAT 57.365 32.000 0.00 0.00 45.77 1.28
313 337 8.558973 TTAAAATAACCGAGGGACGAAAAATA 57.441 30.769 0.00 0.00 45.77 1.40
314 338 5.970317 AAAATAACCGAGGGACGAAAAAT 57.030 34.783 0.00 0.00 45.77 1.82
315 339 6.874288 TTAAAATAACCGAGGGACGAAAAA 57.126 33.333 0.00 0.00 45.77 1.94
316 340 6.874288 TTTAAAATAACCGAGGGACGAAAA 57.126 33.333 0.00 0.00 45.77 2.29
317 341 6.486320 ACTTTTAAAATAACCGAGGGACGAAA 59.514 34.615 0.09 0.00 45.77 3.46
318 342 5.997129 ACTTTTAAAATAACCGAGGGACGAA 59.003 36.000 0.09 0.00 45.77 3.85
319 343 5.550290 ACTTTTAAAATAACCGAGGGACGA 58.450 37.500 0.09 0.00 45.77 4.20
320 344 5.868043 ACTTTTAAAATAACCGAGGGACG 57.132 39.130 0.09 0.00 42.18 4.79
321 345 9.382275 TGTATACTTTTAAAATAACCGAGGGAC 57.618 33.333 4.17 0.00 0.00 4.46
322 346 9.956640 TTGTATACTTTTAAAATAACCGAGGGA 57.043 29.630 4.17 0.00 0.00 4.20
333 357 9.589461 TGAGGGACCATTTGTATACTTTTAAAA 57.411 29.630 4.17 0.00 0.00 1.52
334 358 9.589461 TTGAGGGACCATTTGTATACTTTTAAA 57.411 29.630 4.17 0.00 0.00 1.52
335 359 9.016438 GTTGAGGGACCATTTGTATACTTTTAA 57.984 33.333 4.17 0.00 0.00 1.52
336 360 8.387813 AGTTGAGGGACCATTTGTATACTTTTA 58.612 33.333 4.17 0.00 0.00 1.52
337 361 7.238710 AGTTGAGGGACCATTTGTATACTTTT 58.761 34.615 4.17 0.00 0.00 2.27
338 362 6.790319 AGTTGAGGGACCATTTGTATACTTT 58.210 36.000 4.17 0.00 0.00 2.66
339 363 6.388619 AGTTGAGGGACCATTTGTATACTT 57.611 37.500 4.17 0.00 0.00 2.24
340 364 6.012858 TGAAGTTGAGGGACCATTTGTATACT 60.013 38.462 4.17 0.00 0.00 2.12
341 365 6.177610 TGAAGTTGAGGGACCATTTGTATAC 58.822 40.000 0.00 0.00 0.00 1.47
342 366 6.381498 TGAAGTTGAGGGACCATTTGTATA 57.619 37.500 0.00 0.00 0.00 1.47
343 367 5.255397 TGAAGTTGAGGGACCATTTGTAT 57.745 39.130 0.00 0.00 0.00 2.29
344 368 4.715534 TGAAGTTGAGGGACCATTTGTA 57.284 40.909 0.00 0.00 0.00 2.41
345 369 3.593442 TGAAGTTGAGGGACCATTTGT 57.407 42.857 0.00 0.00 0.00 2.83
346 370 4.935352 TTTGAAGTTGAGGGACCATTTG 57.065 40.909 0.00 0.00 0.00 2.32
347 371 4.100963 GGTTTTGAAGTTGAGGGACCATTT 59.899 41.667 0.00 0.00 0.00 2.32
348 372 3.641436 GGTTTTGAAGTTGAGGGACCATT 59.359 43.478 0.00 0.00 0.00 3.16
349 373 3.230976 GGTTTTGAAGTTGAGGGACCAT 58.769 45.455 0.00 0.00 0.00 3.55
350 374 2.024846 TGGTTTTGAAGTTGAGGGACCA 60.025 45.455 0.00 0.00 33.84 4.02
351 375 2.623416 CTGGTTTTGAAGTTGAGGGACC 59.377 50.000 0.00 0.00 0.00 4.46
352 376 2.034685 GCTGGTTTTGAAGTTGAGGGAC 59.965 50.000 0.00 0.00 0.00 4.46
353 377 2.306847 GCTGGTTTTGAAGTTGAGGGA 58.693 47.619 0.00 0.00 0.00 4.20
354 378 2.031120 TGCTGGTTTTGAAGTTGAGGG 58.969 47.619 0.00 0.00 0.00 4.30
355 379 3.799281 TTGCTGGTTTTGAAGTTGAGG 57.201 42.857 0.00 0.00 0.00 3.86
356 380 5.170748 AGTTTTGCTGGTTTTGAAGTTGAG 58.829 37.500 0.00 0.00 0.00 3.02
357 381 5.146010 AGTTTTGCTGGTTTTGAAGTTGA 57.854 34.783 0.00 0.00 0.00 3.18
358 382 5.861222 AAGTTTTGCTGGTTTTGAAGTTG 57.139 34.783 0.00 0.00 0.00 3.16
359 383 6.697395 ACTAAGTTTTGCTGGTTTTGAAGTT 58.303 32.000 0.00 0.00 0.00 2.66
360 384 6.280855 ACTAAGTTTTGCTGGTTTTGAAGT 57.719 33.333 0.00 0.00 0.00 3.01
361 385 5.748630 GGACTAAGTTTTGCTGGTTTTGAAG 59.251 40.000 0.00 0.00 0.00 3.02
362 386 5.394773 GGGACTAAGTTTTGCTGGTTTTGAA 60.395 40.000 0.00 0.00 0.00 2.69
363 387 4.098807 GGGACTAAGTTTTGCTGGTTTTGA 59.901 41.667 0.00 0.00 0.00 2.69
364 388 4.099419 AGGGACTAAGTTTTGCTGGTTTTG 59.901 41.667 0.00 0.00 36.02 2.44
365 389 4.286707 AGGGACTAAGTTTTGCTGGTTTT 58.713 39.130 0.00 0.00 36.02 2.43
366 390 3.910989 AGGGACTAAGTTTTGCTGGTTT 58.089 40.909 0.00 0.00 36.02 3.27
367 391 3.595190 AGGGACTAAGTTTTGCTGGTT 57.405 42.857 0.00 0.00 36.02 3.67
368 392 3.595190 AAGGGACTAAGTTTTGCTGGT 57.405 42.857 0.00 0.00 38.49 4.00
369 393 6.590234 AATTAAGGGACTAAGTTTTGCTGG 57.410 37.500 0.00 0.00 38.49 4.85
370 394 8.887036 AAAAATTAAGGGACTAAGTTTTGCTG 57.113 30.769 1.95 0.00 38.49 4.41
392 416 9.353431 AGGAACTAAACTTATCCGGTTTAAAAA 57.647 29.630 0.00 0.00 38.25 1.94
393 417 8.922931 AGGAACTAAACTTATCCGGTTTAAAA 57.077 30.769 0.00 0.00 38.25 1.52
394 418 7.331687 CGAGGAACTAAACTTATCCGGTTTAAA 59.668 37.037 0.00 0.00 41.55 1.52
395 419 6.813152 CGAGGAACTAAACTTATCCGGTTTAA 59.187 38.462 0.00 0.10 41.55 1.52
396 420 6.071391 ACGAGGAACTAAACTTATCCGGTTTA 60.071 38.462 0.00 0.00 41.55 2.01
397 421 5.173664 CGAGGAACTAAACTTATCCGGTTT 58.826 41.667 0.00 0.00 41.55 3.27
398 422 4.221482 ACGAGGAACTAAACTTATCCGGTT 59.779 41.667 0.00 0.00 41.55 4.44
399 423 3.766051 ACGAGGAACTAAACTTATCCGGT 59.234 43.478 0.00 0.00 41.55 5.28
400 424 4.110482 CACGAGGAACTAAACTTATCCGG 58.890 47.826 0.00 0.00 41.55 5.14
401 425 3.550678 GCACGAGGAACTAAACTTATCCG 59.449 47.826 0.00 0.00 41.55 4.18
402 426 4.501071 TGCACGAGGAACTAAACTTATCC 58.499 43.478 0.00 0.00 41.55 2.59
403 427 5.444218 CGTTGCACGAGGAACTAAACTTATC 60.444 44.000 14.52 0.00 46.05 1.75
404 428 4.387862 CGTTGCACGAGGAACTAAACTTAT 59.612 41.667 14.52 0.00 46.05 1.73
405 429 3.737266 CGTTGCACGAGGAACTAAACTTA 59.263 43.478 14.52 0.00 46.05 2.24
406 430 2.542595 CGTTGCACGAGGAACTAAACTT 59.457 45.455 14.52 0.00 46.05 2.66
407 431 2.132762 CGTTGCACGAGGAACTAAACT 58.867 47.619 14.52 0.00 46.05 2.66
408 432 1.193874 CCGTTGCACGAGGAACTAAAC 59.806 52.381 14.52 0.00 46.05 2.01
409 433 1.068895 TCCGTTGCACGAGGAACTAAA 59.931 47.619 14.52 0.00 46.05 1.85
410 434 0.675083 TCCGTTGCACGAGGAACTAA 59.325 50.000 14.52 0.75 46.05 2.24
411 435 0.242825 CTCCGTTGCACGAGGAACTA 59.757 55.000 14.52 2.98 46.05 2.24
412 436 1.006102 CTCCGTTGCACGAGGAACT 60.006 57.895 14.52 0.00 46.05 3.01
413 437 2.027625 CCTCCGTTGCACGAGGAAC 61.028 63.158 15.63 7.15 46.05 3.62
414 438 2.342279 CCTCCGTTGCACGAGGAA 59.658 61.111 15.63 0.00 46.05 3.36
415 439 4.373116 GCCTCCGTTGCACGAGGA 62.373 66.667 22.20 13.89 46.05 3.71
417 441 4.379243 AGGCCTCCGTTGCACGAG 62.379 66.667 0.00 4.31 46.05 4.18
418 442 4.373116 GAGGCCTCCGTTGCACGA 62.373 66.667 23.19 0.00 46.05 4.35
428 452 1.408969 CTCTAGTCCTTGGAGGCCTC 58.591 60.000 25.59 25.59 34.61 4.70
429 453 0.689412 GCTCTAGTCCTTGGAGGCCT 60.689 60.000 3.86 3.86 34.61 5.19
430 454 1.691195 GGCTCTAGTCCTTGGAGGCC 61.691 65.000 0.00 0.00 43.72 5.19
431 455 1.826709 GGCTCTAGTCCTTGGAGGC 59.173 63.158 0.00 0.00 43.32 4.70
432 456 0.827368 GTGGCTCTAGTCCTTGGAGG 59.173 60.000 5.62 0.00 36.46 4.30
433 457 0.827368 GGTGGCTCTAGTCCTTGGAG 59.173 60.000 5.62 0.00 0.00 3.86
434 458 0.413832 AGGTGGCTCTAGTCCTTGGA 59.586 55.000 5.62 0.00 0.00 3.53
435 459 0.827368 GAGGTGGCTCTAGTCCTTGG 59.173 60.000 5.62 0.00 0.00 3.61
436 460 0.457851 CGAGGTGGCTCTAGTCCTTG 59.542 60.000 5.62 0.00 0.00 3.61
437 461 1.324005 GCGAGGTGGCTCTAGTCCTT 61.324 60.000 0.00 0.00 0.00 3.36
438 462 1.755008 GCGAGGTGGCTCTAGTCCT 60.755 63.158 0.00 0.00 0.00 3.85
439 463 2.787567 GGCGAGGTGGCTCTAGTCC 61.788 68.421 0.00 0.00 40.72 3.85
440 464 2.010582 CTGGCGAGGTGGCTCTAGTC 62.011 65.000 0.00 0.00 45.14 2.59
441 465 2.037367 TGGCGAGGTGGCTCTAGT 59.963 61.111 0.00 0.00 45.14 2.57
442 466 1.733402 CTCTGGCGAGGTGGCTCTAG 61.733 65.000 0.00 0.00 45.14 2.43
443 467 1.754621 CTCTGGCGAGGTGGCTCTA 60.755 63.158 0.00 0.00 45.14 2.43
444 468 3.073735 CTCTGGCGAGGTGGCTCT 61.074 66.667 0.00 0.00 45.14 4.09
462 486 4.512914 GGGTCTGGGCATGGAGGC 62.513 72.222 0.00 0.00 43.27 4.70
463 487 2.276309 GAAGGGTCTGGGCATGGAGG 62.276 65.000 0.00 0.00 0.00 4.30
464 488 1.225704 GAAGGGTCTGGGCATGGAG 59.774 63.158 0.00 0.00 0.00 3.86
465 489 1.229951 AGAAGGGTCTGGGCATGGA 60.230 57.895 0.00 0.00 30.83 3.41
466 490 1.225704 GAGAAGGGTCTGGGCATGG 59.774 63.158 0.00 0.00 32.80 3.66
467 491 1.225704 GGAGAAGGGTCTGGGCATG 59.774 63.158 0.00 0.00 32.80 4.06
468 492 1.083706 AGGAGAAGGGTCTGGGCAT 59.916 57.895 0.00 0.00 32.80 4.40
469 493 1.920325 CAGGAGAAGGGTCTGGGCA 60.920 63.158 0.00 0.00 32.80 5.36
470 494 2.993853 CAGGAGAAGGGTCTGGGC 59.006 66.667 0.00 0.00 32.80 5.36
471 495 1.614824 AGCAGGAGAAGGGTCTGGG 60.615 63.158 0.00 0.00 32.80 4.45
472 496 1.601171 CAGCAGGAGAAGGGTCTGG 59.399 63.158 0.00 0.00 32.80 3.86
473 497 1.078567 GCAGCAGGAGAAGGGTCTG 60.079 63.158 0.00 0.00 32.80 3.51
474 498 1.229464 AGCAGCAGGAGAAGGGTCT 60.229 57.895 0.00 0.00 36.55 3.85
475 499 1.078567 CAGCAGCAGGAGAAGGGTC 60.079 63.158 0.00 0.00 0.00 4.46
476 500 2.600729 CCAGCAGCAGGAGAAGGGT 61.601 63.158 0.00 0.00 0.00 4.34
477 501 2.271497 CCAGCAGCAGGAGAAGGG 59.729 66.667 0.00 0.00 0.00 3.95
478 502 1.078567 GTCCAGCAGCAGGAGAAGG 60.079 63.158 6.82 0.00 35.42 3.46
479 503 1.447489 CGTCCAGCAGCAGGAGAAG 60.447 63.158 6.82 0.00 35.42 2.85
480 504 2.659016 CGTCCAGCAGCAGGAGAA 59.341 61.111 6.82 0.00 35.42 2.87
491 515 3.716006 CAGTTGGTGCGCGTCCAG 61.716 66.667 20.23 8.87 36.28 3.86
500 524 2.991190 GCATTTCATCAAGCAGTTGGTG 59.009 45.455 0.00 0.00 45.01 4.17
501 525 2.028748 GGCATTTCATCAAGCAGTTGGT 60.029 45.455 0.00 0.00 34.09 3.67
502 526 2.232941 AGGCATTTCATCAAGCAGTTGG 59.767 45.455 0.00 0.00 34.09 3.77
503 527 3.587797 AGGCATTTCATCAAGCAGTTG 57.412 42.857 0.00 0.00 34.67 3.16
504 528 3.129988 GCTAGGCATTTCATCAAGCAGTT 59.870 43.478 0.00 0.00 0.00 3.16
505 529 2.686915 GCTAGGCATTTCATCAAGCAGT 59.313 45.455 0.00 0.00 0.00 4.40
506 530 2.034305 GGCTAGGCATTTCATCAAGCAG 59.966 50.000 12.16 0.00 0.00 4.24
507 531 2.026641 GGCTAGGCATTTCATCAAGCA 58.973 47.619 12.16 0.00 0.00 3.91
508 532 2.026641 TGGCTAGGCATTTCATCAAGC 58.973 47.619 16.16 0.00 0.00 4.01
509 533 3.698040 ACTTGGCTAGGCATTTCATCAAG 59.302 43.478 20.94 13.71 37.12 3.02
510 534 3.700538 ACTTGGCTAGGCATTTCATCAA 58.299 40.909 20.94 1.05 0.00 2.57
511 535 3.370840 ACTTGGCTAGGCATTTCATCA 57.629 42.857 20.94 1.85 0.00 3.07
512 536 3.950395 AGAACTTGGCTAGGCATTTCATC 59.050 43.478 28.46 19.38 0.00 2.92
513 537 3.973425 AGAACTTGGCTAGGCATTTCAT 58.027 40.909 28.46 17.70 0.00 2.57
514 538 3.439857 AGAACTTGGCTAGGCATTTCA 57.560 42.857 28.46 13.73 0.00 2.69
515 539 5.590259 TCATTAGAACTTGGCTAGGCATTTC 59.410 40.000 20.94 22.53 0.00 2.17
516 540 5.509498 TCATTAGAACTTGGCTAGGCATTT 58.491 37.500 20.94 15.83 0.00 2.32
517 541 5.116084 TCATTAGAACTTGGCTAGGCATT 57.884 39.130 20.94 12.44 0.00 3.56
518 542 4.778213 TCATTAGAACTTGGCTAGGCAT 57.222 40.909 20.94 5.03 0.00 4.40
519 543 4.778213 ATCATTAGAACTTGGCTAGGCA 57.222 40.909 16.16 16.16 0.00 4.75
520 544 5.703130 CCTTATCATTAGAACTTGGCTAGGC 59.297 44.000 9.85 9.85 0.00 3.93
521 545 7.067496 TCCTTATCATTAGAACTTGGCTAGG 57.933 40.000 0.20 0.00 0.00 3.02
522 546 7.169982 CGTTCCTTATCATTAGAACTTGGCTAG 59.830 40.741 0.00 0.00 37.15 3.42
523 547 6.984474 CGTTCCTTATCATTAGAACTTGGCTA 59.016 38.462 0.00 0.00 37.15 3.93
524 548 5.817816 CGTTCCTTATCATTAGAACTTGGCT 59.182 40.000 0.00 0.00 37.15 4.75
525 549 5.815740 TCGTTCCTTATCATTAGAACTTGGC 59.184 40.000 0.00 0.00 37.15 4.52
526 550 6.480320 CCTCGTTCCTTATCATTAGAACTTGG 59.520 42.308 0.00 0.00 37.15 3.61
527 551 6.480320 CCCTCGTTCCTTATCATTAGAACTTG 59.520 42.308 0.00 0.00 37.15 3.16
528 552 6.383147 TCCCTCGTTCCTTATCATTAGAACTT 59.617 38.462 0.00 0.00 37.15 2.66
529 553 5.897824 TCCCTCGTTCCTTATCATTAGAACT 59.102 40.000 0.00 0.00 37.15 3.01
530 554 5.984323 GTCCCTCGTTCCTTATCATTAGAAC 59.016 44.000 0.00 0.00 36.19 3.01
531 555 5.897824 AGTCCCTCGTTCCTTATCATTAGAA 59.102 40.000 0.00 0.00 0.00 2.10
532 556 5.455872 AGTCCCTCGTTCCTTATCATTAGA 58.544 41.667 0.00 0.00 0.00 2.10
533 557 5.793030 AGTCCCTCGTTCCTTATCATTAG 57.207 43.478 0.00 0.00 0.00 1.73
534 558 7.664552 TTTAGTCCCTCGTTCCTTATCATTA 57.335 36.000 0.00 0.00 0.00 1.90
535 559 6.555463 TTTAGTCCCTCGTTCCTTATCATT 57.445 37.500 0.00 0.00 0.00 2.57
536 560 6.555463 TTTTAGTCCCTCGTTCCTTATCAT 57.445 37.500 0.00 0.00 0.00 2.45
537 561 6.555463 ATTTTAGTCCCTCGTTCCTTATCA 57.445 37.500 0.00 0.00 0.00 2.15
538 562 9.205719 GATAATTTTAGTCCCTCGTTCCTTATC 57.794 37.037 0.00 0.00 0.00 1.75
539 563 8.935741 AGATAATTTTAGTCCCTCGTTCCTTAT 58.064 33.333 0.00 0.00 0.00 1.73
540 564 8.202137 CAGATAATTTTAGTCCCTCGTTCCTTA 58.798 37.037 0.00 0.00 0.00 2.69
541 565 7.048512 CAGATAATTTTAGTCCCTCGTTCCTT 58.951 38.462 0.00 0.00 0.00 3.36
542 566 6.408206 CCAGATAATTTTAGTCCCTCGTTCCT 60.408 42.308 0.00 0.00 0.00 3.36
543 567 5.758784 CCAGATAATTTTAGTCCCTCGTTCC 59.241 44.000 0.00 0.00 0.00 3.62
544 568 6.346896 ACCAGATAATTTTAGTCCCTCGTTC 58.653 40.000 0.00 0.00 0.00 3.95
545 569 6.309389 ACCAGATAATTTTAGTCCCTCGTT 57.691 37.500 0.00 0.00 0.00 3.85
546 570 5.952347 ACCAGATAATTTTAGTCCCTCGT 57.048 39.130 0.00 0.00 0.00 4.18
547 571 6.821665 TCAAACCAGATAATTTTAGTCCCTCG 59.178 38.462 0.00 0.00 0.00 4.63
548 572 8.047310 TCTCAAACCAGATAATTTTAGTCCCTC 58.953 37.037 0.00 0.00 0.00 4.30
549 573 7.928873 TCTCAAACCAGATAATTTTAGTCCCT 58.071 34.615 0.00 0.00 0.00 4.20
550 574 8.575649 TTCTCAAACCAGATAATTTTAGTCCC 57.424 34.615 0.00 0.00 0.00 4.46
556 580 9.933723 CCTCAATTTCTCAAACCAGATAATTTT 57.066 29.630 0.00 0.00 0.00 1.82
557 581 8.534496 CCCTCAATTTCTCAAACCAGATAATTT 58.466 33.333 0.00 0.00 0.00 1.82
558 582 7.124750 CCCCTCAATTTCTCAAACCAGATAATT 59.875 37.037 0.00 0.00 0.00 1.40
559 583 6.608808 CCCCTCAATTTCTCAAACCAGATAAT 59.391 38.462 0.00 0.00 0.00 1.28
560 584 5.951747 CCCCTCAATTTCTCAAACCAGATAA 59.048 40.000 0.00 0.00 0.00 1.75
561 585 5.509498 CCCCTCAATTTCTCAAACCAGATA 58.491 41.667 0.00 0.00 0.00 1.98
562 586 4.347607 CCCCTCAATTTCTCAAACCAGAT 58.652 43.478 0.00 0.00 0.00 2.90
563 587 3.766545 CCCCTCAATTTCTCAAACCAGA 58.233 45.455 0.00 0.00 0.00 3.86
564 588 2.232208 GCCCCTCAATTTCTCAAACCAG 59.768 50.000 0.00 0.00 0.00 4.00
565 589 2.158325 AGCCCCTCAATTTCTCAAACCA 60.158 45.455 0.00 0.00 0.00 3.67
566 590 2.529632 AGCCCCTCAATTTCTCAAACC 58.470 47.619 0.00 0.00 0.00 3.27
567 591 5.722021 TTTAGCCCCTCAATTTCTCAAAC 57.278 39.130 0.00 0.00 0.00 2.93
568 592 6.933514 ATTTTAGCCCCTCAATTTCTCAAA 57.066 33.333 0.00 0.00 0.00 2.69
569 593 6.933514 AATTTTAGCCCCTCAATTTCTCAA 57.066 33.333 0.00 0.00 0.00 3.02
570 594 8.061304 AGATAATTTTAGCCCCTCAATTTCTCA 58.939 33.333 0.00 0.00 0.00 3.27
571 595 8.355913 CAGATAATTTTAGCCCCTCAATTTCTC 58.644 37.037 0.00 0.00 0.00 2.87
572 596 7.288621 CCAGATAATTTTAGCCCCTCAATTTCT 59.711 37.037 0.00 0.00 0.00 2.52
573 597 7.069950 ACCAGATAATTTTAGCCCCTCAATTTC 59.930 37.037 0.00 0.00 0.00 2.17
574 598 6.902974 ACCAGATAATTTTAGCCCCTCAATTT 59.097 34.615 0.00 0.00 0.00 1.82
575 599 6.443832 ACCAGATAATTTTAGCCCCTCAATT 58.556 36.000 0.00 0.00 0.00 2.32
576 600 6.030727 ACCAGATAATTTTAGCCCCTCAAT 57.969 37.500 0.00 0.00 0.00 2.57
577 601 5.466127 ACCAGATAATTTTAGCCCCTCAA 57.534 39.130 0.00 0.00 0.00 3.02
578 602 5.466127 AACCAGATAATTTTAGCCCCTCA 57.534 39.130 0.00 0.00 0.00 3.86
579 603 5.891551 TCAAACCAGATAATTTTAGCCCCTC 59.108 40.000 0.00 0.00 0.00 4.30
580 604 5.837829 TCAAACCAGATAATTTTAGCCCCT 58.162 37.500 0.00 0.00 0.00 4.79
581 605 5.891551 TCTCAAACCAGATAATTTTAGCCCC 59.108 40.000 0.00 0.00 0.00 5.80
582 606 7.404671 TTCTCAAACCAGATAATTTTAGCCC 57.595 36.000 0.00 0.00 0.00 5.19
583 607 9.875691 AATTTCTCAAACCAGATAATTTTAGCC 57.124 29.630 0.00 0.00 0.00 3.93
588 612 9.933723 CCTTCAATTTCTCAAACCAGATAATTT 57.066 29.630 0.00 0.00 0.00 1.82
589 613 9.312904 TCCTTCAATTTCTCAAACCAGATAATT 57.687 29.630 0.00 0.00 0.00 1.40
590 614 8.743714 GTCCTTCAATTTCTCAAACCAGATAAT 58.256 33.333 0.00 0.00 0.00 1.28
591 615 7.944554 AGTCCTTCAATTTCTCAAACCAGATAA 59.055 33.333 0.00 0.00 0.00 1.75
592 616 7.461749 AGTCCTTCAATTTCTCAAACCAGATA 58.538 34.615 0.00 0.00 0.00 1.98
593 617 6.310149 AGTCCTTCAATTTCTCAAACCAGAT 58.690 36.000 0.00 0.00 0.00 2.90
594 618 5.694995 AGTCCTTCAATTTCTCAAACCAGA 58.305 37.500 0.00 0.00 0.00 3.86
595 619 7.308830 CCTTAGTCCTTCAATTTCTCAAACCAG 60.309 40.741 0.00 0.00 0.00 4.00
596 620 6.490040 CCTTAGTCCTTCAATTTCTCAAACCA 59.510 38.462 0.00 0.00 0.00 3.67
597 621 6.490381 ACCTTAGTCCTTCAATTTCTCAAACC 59.510 38.462 0.00 0.00 0.00 3.27
598 622 7.511959 ACCTTAGTCCTTCAATTTCTCAAAC 57.488 36.000 0.00 0.00 0.00 2.93
599 623 8.413229 CAAACCTTAGTCCTTCAATTTCTCAAA 58.587 33.333 0.00 0.00 0.00 2.69
600 624 7.470009 GCAAACCTTAGTCCTTCAATTTCTCAA 60.470 37.037 0.00 0.00 0.00 3.02
601 625 6.016276 GCAAACCTTAGTCCTTCAATTTCTCA 60.016 38.462 0.00 0.00 0.00 3.27
602 626 6.207614 AGCAAACCTTAGTCCTTCAATTTCTC 59.792 38.462 0.00 0.00 0.00 2.87
603 627 6.015940 CAGCAAACCTTAGTCCTTCAATTTCT 60.016 38.462 0.00 0.00 0.00 2.52
604 628 6.152379 CAGCAAACCTTAGTCCTTCAATTTC 58.848 40.000 0.00 0.00 0.00 2.17
605 629 5.011023 CCAGCAAACCTTAGTCCTTCAATTT 59.989 40.000 0.00 0.00 0.00 1.82
606 630 4.524328 CCAGCAAACCTTAGTCCTTCAATT 59.476 41.667 0.00 0.00 0.00 2.32
607 631 4.082125 CCAGCAAACCTTAGTCCTTCAAT 58.918 43.478 0.00 0.00 0.00 2.57
608 632 3.117663 ACCAGCAAACCTTAGTCCTTCAA 60.118 43.478 0.00 0.00 0.00 2.69
609 633 2.441750 ACCAGCAAACCTTAGTCCTTCA 59.558 45.455 0.00 0.00 0.00 3.02
610 634 3.141767 ACCAGCAAACCTTAGTCCTTC 57.858 47.619 0.00 0.00 0.00 3.46
611 635 3.595190 AACCAGCAAACCTTAGTCCTT 57.405 42.857 0.00 0.00 0.00 3.36
612 636 3.595190 AAACCAGCAAACCTTAGTCCT 57.405 42.857 0.00 0.00 0.00 3.85
613 637 3.634910 TCAAAACCAGCAAACCTTAGTCC 59.365 43.478 0.00 0.00 0.00 3.85
614 638 4.911514 TCAAAACCAGCAAACCTTAGTC 57.088 40.909 0.00 0.00 0.00 2.59
615 639 4.709886 ACTTCAAAACCAGCAAACCTTAGT 59.290 37.500 0.00 0.00 0.00 2.24
616 640 5.262588 ACTTCAAAACCAGCAAACCTTAG 57.737 39.130 0.00 0.00 0.00 2.18
617 641 5.669164 AACTTCAAAACCAGCAAACCTTA 57.331 34.783 0.00 0.00 0.00 2.69
618 642 4.551702 AACTTCAAAACCAGCAAACCTT 57.448 36.364 0.00 0.00 0.00 3.50
619 643 4.551702 AAACTTCAAAACCAGCAAACCT 57.448 36.364 0.00 0.00 0.00 3.50
620 644 4.808895 CCTAAACTTCAAAACCAGCAAACC 59.191 41.667 0.00 0.00 0.00 3.27
621 645 4.808895 CCCTAAACTTCAAAACCAGCAAAC 59.191 41.667 0.00 0.00 0.00 2.93
622 646 4.141824 CCCCTAAACTTCAAAACCAGCAAA 60.142 41.667 0.00 0.00 0.00 3.68
623 647 3.386402 CCCCTAAACTTCAAAACCAGCAA 59.614 43.478 0.00 0.00 0.00 3.91
624 648 2.962421 CCCCTAAACTTCAAAACCAGCA 59.038 45.455 0.00 0.00 0.00 4.41
625 649 2.288825 GCCCCTAAACTTCAAAACCAGC 60.289 50.000 0.00 0.00 0.00 4.85
626 650 2.299013 GGCCCCTAAACTTCAAAACCAG 59.701 50.000 0.00 0.00 0.00 4.00
627 651 2.321719 GGCCCCTAAACTTCAAAACCA 58.678 47.619 0.00 0.00 0.00 3.67
628 652 2.321719 TGGCCCCTAAACTTCAAAACC 58.678 47.619 0.00 0.00 0.00 3.27
629 653 4.617253 AATGGCCCCTAAACTTCAAAAC 57.383 40.909 0.00 0.00 0.00 2.43
630 654 4.904853 AGAAATGGCCCCTAAACTTCAAAA 59.095 37.500 0.00 0.00 0.00 2.44
631 655 4.488770 AGAAATGGCCCCTAAACTTCAAA 58.511 39.130 0.00 0.00 0.00 2.69
632 656 4.126520 AGAAATGGCCCCTAAACTTCAA 57.873 40.909 0.00 0.00 0.00 2.69
633 657 3.825908 AGAAATGGCCCCTAAACTTCA 57.174 42.857 0.00 0.00 0.00 3.02
634 658 6.602278 AGTATAGAAATGGCCCCTAAACTTC 58.398 40.000 0.00 0.00 0.00 3.01
635 659 6.592207 AGTATAGAAATGGCCCCTAAACTT 57.408 37.500 0.00 0.00 0.00 2.66
636 660 6.592207 AAGTATAGAAATGGCCCCTAAACT 57.408 37.500 0.00 0.00 0.00 2.66
637 661 7.340999 TCAAAAGTATAGAAATGGCCCCTAAAC 59.659 37.037 0.00 0.00 0.00 2.01
638 662 7.415086 TCAAAAGTATAGAAATGGCCCCTAAA 58.585 34.615 0.00 0.00 0.00 1.85
639 663 6.975949 TCAAAAGTATAGAAATGGCCCCTAA 58.024 36.000 0.00 0.00 0.00 2.69
640 664 6.584471 TCAAAAGTATAGAAATGGCCCCTA 57.416 37.500 0.00 0.00 0.00 3.53
641 665 5.466127 TCAAAAGTATAGAAATGGCCCCT 57.534 39.130 0.00 0.00 0.00 4.79
642 666 6.538945 TTTCAAAAGTATAGAAATGGCCCC 57.461 37.500 0.00 0.00 0.00 5.80
654 678 9.308000 TGTGTCCCTCAATTATTTCAAAAGTAT 57.692 29.630 0.00 0.00 0.00 2.12
655 679 8.698973 TGTGTCCCTCAATTATTTCAAAAGTA 57.301 30.769 0.00 0.00 0.00 2.24
656 680 7.595819 TGTGTCCCTCAATTATTTCAAAAGT 57.404 32.000 0.00 0.00 0.00 2.66
657 681 8.885494 TTTGTGTCCCTCAATTATTTCAAAAG 57.115 30.769 0.00 0.00 0.00 2.27
658 682 9.844257 ATTTTGTGTCCCTCAATTATTTCAAAA 57.156 25.926 0.00 0.00 36.19 2.44
669 693 8.536175 GGGAAAATTATATTTTGTGTCCCTCAA 58.464 33.333 15.27 0.00 0.00 3.02
670 694 7.676043 TGGGAAAATTATATTTTGTGTCCCTCA 59.324 33.333 19.63 6.90 33.92 3.86
671 695 8.073467 TGGGAAAATTATATTTTGTGTCCCTC 57.927 34.615 19.63 4.61 33.92 4.30
672 696 8.622572 ATGGGAAAATTATATTTTGTGTCCCT 57.377 30.769 19.63 9.74 33.92 4.20
720 744 1.149174 CCCAATCCGCATACAGGCT 59.851 57.895 0.00 0.00 0.00 4.58
922 974 4.345854 GACTGGCTATGCTAGGTAGGTAT 58.654 47.826 7.75 0.00 41.48 2.73
923 975 3.764218 GACTGGCTATGCTAGGTAGGTA 58.236 50.000 7.75 0.00 41.48 3.08
925 977 1.542030 CGACTGGCTATGCTAGGTAGG 59.458 57.143 7.75 0.00 41.48 3.18
1096 1179 4.308458 CGGCACCACCAGGAACGA 62.308 66.667 0.00 0.00 39.03 3.85
1423 1528 2.088423 TCAGCAAACAAAACCACTCGT 58.912 42.857 0.00 0.00 0.00 4.18
1463 1615 0.179121 TCCGTCGATCCAATCCAACG 60.179 55.000 0.00 0.00 35.77 4.10
1546 1727 0.393077 GGATCACCATTCGGTCCGAT 59.607 55.000 16.23 2.47 44.71 4.18
1555 1736 1.355381 TCAAGCACCTGGATCACCATT 59.645 47.619 0.00 0.00 45.87 3.16
1622 1830 6.831868 ACCCATAATACAAGAATAACCCACAC 59.168 38.462 0.00 0.00 0.00 3.82
1624 1832 6.204108 CGACCCATAATACAAGAATAACCCAC 59.796 42.308 0.00 0.00 0.00 4.61
1625 1833 6.292923 CGACCCATAATACAAGAATAACCCA 58.707 40.000 0.00 0.00 0.00 4.51
1626 1834 5.704053 CCGACCCATAATACAAGAATAACCC 59.296 44.000 0.00 0.00 0.00 4.11
1627 1835 6.293698 ACCGACCCATAATACAAGAATAACC 58.706 40.000 0.00 0.00 0.00 2.85
1628 1836 7.797038 AACCGACCCATAATACAAGAATAAC 57.203 36.000 0.00 0.00 0.00 1.89
1629 1837 8.810990 AAAACCGACCCATAATACAAGAATAA 57.189 30.769 0.00 0.00 0.00 1.40
1632 1971 6.570764 GCAAAAACCGACCCATAATACAAGAA 60.571 38.462 0.00 0.00 0.00 2.52
1648 1987 5.676310 CAGTAAAAATTGCAAGCAAAAACCG 59.324 36.000 11.89 0.00 39.55 4.44
1667 2006 5.336213 CGGCAAGAAACTACTAGTCCAGTAA 60.336 44.000 0.00 0.00 39.28 2.24
1668 2007 4.157289 CGGCAAGAAACTACTAGTCCAGTA 59.843 45.833 0.00 0.00 38.80 2.74
1669 2008 3.056749 CGGCAAGAAACTACTAGTCCAGT 60.057 47.826 0.00 0.00 41.62 4.00
1670 2009 3.512680 CGGCAAGAAACTACTAGTCCAG 58.487 50.000 0.00 0.00 0.00 3.86
1678 2579 1.670083 ACGGCCGGCAAGAAACTAC 60.670 57.895 31.76 6.07 0.00 2.73
1699 2769 2.938756 GCAGGACTTCCATCTCCACTTG 60.939 54.545 0.00 0.00 38.89 3.16
1710 2780 3.550437 ATGTCTATGTGCAGGACTTCC 57.450 47.619 0.00 0.00 0.00 3.46
1752 3254 1.481772 ACATGCATGTTATTGGCCACC 59.518 47.619 26.61 0.00 37.90 4.61
1836 3831 5.047377 TGGTTAGTCATGCCAAAGAATTTCC 60.047 40.000 0.00 0.00 35.03 3.13
1837 3832 6.024552 TGGTTAGTCATGCCAAAGAATTTC 57.975 37.500 0.00 0.00 35.03 2.17
1911 3959 1.675641 CAGCCACCTAACCCACTGC 60.676 63.158 0.00 0.00 0.00 4.40
1935 3987 2.457366 AAGTGAAGCGTTGACTAGGG 57.543 50.000 0.00 0.00 0.00 3.53
1959 4555 1.363744 CTTTTCTGCGAGGCTCGAAT 58.636 50.000 38.56 0.00 43.74 3.34
1991 4597 6.415573 CGTAGTGTGTAATGTTTGGTTTTTCC 59.584 38.462 0.00 0.00 0.00 3.13
1994 4600 6.439675 ACGTAGTGTGTAATGTTTGGTTTT 57.560 33.333 0.00 0.00 42.51 2.43
1995 4601 7.577979 CATACGTAGTGTGTAATGTTTGGTTT 58.422 34.615 0.08 0.00 44.73 3.27
1996 4602 7.124347 CATACGTAGTGTGTAATGTTTGGTT 57.876 36.000 0.08 0.00 44.73 3.67
1997 4603 6.715344 CATACGTAGTGTGTAATGTTTGGT 57.285 37.500 0.08 0.00 44.73 3.67
2023 4629 2.086094 AGCACAATCGATGCATGTCAA 58.914 42.857 2.46 0.00 45.92 3.18
2035 4649 1.098050 GGTGTGGATCCAGCACAATC 58.902 55.000 31.11 19.32 33.16 2.67
2038 4652 3.573673 TGGTGTGGATCCAGCACA 58.426 55.556 31.11 21.62 37.88 4.57
2047 4661 3.545574 TGCTGCTCGTGGTGTGGA 61.546 61.111 0.00 0.00 0.00 4.02
2080 6087 0.450583 CGCGCACTACTGAAGGAGTA 59.549 55.000 8.75 0.00 35.96 2.59
2081 6088 1.213013 CGCGCACTACTGAAGGAGT 59.787 57.895 8.75 0.00 38.88 3.85
2082 6089 1.517257 CCGCGCACTACTGAAGGAG 60.517 63.158 8.75 0.00 0.00 3.69
2083 6090 2.571757 CCGCGCACTACTGAAGGA 59.428 61.111 8.75 0.00 0.00 3.36
2084 6091 3.188786 GCCGCGCACTACTGAAGG 61.189 66.667 8.75 0.00 0.00 3.46
2085 6092 2.432456 TGCCGCGCACTACTGAAG 60.432 61.111 8.75 0.00 31.71 3.02
2099 6106 0.385029 TGCAACAATGAGTGTGTGCC 59.615 50.000 14.12 2.35 40.60 5.01
2102 6109 2.030893 CCGAATGCAACAATGAGTGTGT 60.031 45.455 0.00 0.00 40.60 3.72
2103 6110 2.587956 CCGAATGCAACAATGAGTGTG 58.412 47.619 0.00 0.00 40.60 3.82
2105 6112 1.135315 CCCCGAATGCAACAATGAGTG 60.135 52.381 0.00 0.00 0.00 3.51
2106 6113 1.176527 CCCCGAATGCAACAATGAGT 58.823 50.000 0.00 0.00 0.00 3.41
2107 6114 1.135315 CACCCCGAATGCAACAATGAG 60.135 52.381 0.00 0.00 0.00 2.90
2108 6115 0.887247 CACCCCGAATGCAACAATGA 59.113 50.000 0.00 0.00 0.00 2.57
2109 6116 0.737019 GCACCCCGAATGCAACAATG 60.737 55.000 0.00 0.00 42.88 2.82
2110 6117 1.591183 GCACCCCGAATGCAACAAT 59.409 52.632 0.00 0.00 42.88 2.71
2201 6572 6.712095 AGATTTGTTCTGAGTCAAACATGCTA 59.288 34.615 16.42 4.84 36.58 3.49
2230 6601 8.860128 CCCTCTTCGTTTCAAAATAATTTAAGC 58.140 33.333 0.00 0.00 0.00 3.09
2259 6630 3.199946 CCTCCAAGCCTCCAACATAGTAA 59.800 47.826 0.00 0.00 0.00 2.24
2281 6652 7.402640 GTGATTGATTTATTCAGGAACGAGTC 58.597 38.462 0.00 0.00 35.27 3.36
2282 6653 6.036083 CGTGATTGATTTATTCAGGAACGAGT 59.964 38.462 0.00 0.00 37.26 4.18
2283 6654 6.255670 TCGTGATTGATTTATTCAGGAACGAG 59.744 38.462 0.00 0.00 38.23 4.18
2291 6662 3.871006 AGCGCTCGTGATTGATTTATTCA 59.129 39.130 2.64 0.00 0.00 2.57
2311 6682 1.801332 CCAGCATCAAGAGTGCAGC 59.199 57.895 0.00 0.00 44.87 5.25
2314 6685 0.100682 CATGCCAGCATCAAGAGTGC 59.899 55.000 1.19 0.00 42.81 4.40
2356 7324 6.270231 ACCAAGTCTGATTTAACTCCTACACT 59.730 38.462 0.00 0.00 0.00 3.55
2390 7582 2.263545 ACCAAGGGTGTAACTAGGTCC 58.736 52.381 0.00 0.00 36.74 4.46
2550 7938 8.736751 TGATAAAAATGGAAAAGAAAGTACGC 57.263 30.769 0.00 0.00 0.00 4.42
2648 8036 2.349755 GCCTTGTACCCCTTGCGA 59.650 61.111 0.00 0.00 0.00 5.10
2693 8081 1.218047 GCACTCCCGCACATAGTCA 59.782 57.895 0.00 0.00 0.00 3.41
2699 8087 1.891919 GAACTTGCACTCCCGCACA 60.892 57.895 0.00 0.00 42.87 4.57
2712 8100 2.095768 CGTCGAACATGGCAATGAACTT 60.096 45.455 8.45 0.00 37.24 2.66
2720 8108 4.365505 TCGGCGTCGAACATGGCA 62.366 61.111 10.97 0.00 43.03 4.92
2904 8304 8.018520 CCGAATTAACTGCACAACAAATAGTAA 58.981 33.333 0.00 0.00 0.00 2.24
3092 8581 2.029623 AGCTAATGATGCAAAGGCCTG 58.970 47.619 5.69 0.00 40.13 4.85
3093 8582 2.305009 GAGCTAATGATGCAAAGGCCT 58.695 47.619 0.00 0.00 40.13 5.19
3096 8585 4.978083 ACTTGAGCTAATGATGCAAAGG 57.022 40.909 0.00 0.00 33.54 3.11
3099 8588 5.683681 TGGATACTTGAGCTAATGATGCAA 58.316 37.500 0.00 0.00 37.61 4.08
3101 8590 6.624352 TTTGGATACTTGAGCTAATGATGC 57.376 37.500 0.00 0.00 37.61 3.91
3151 8721 3.102204 CCTGGAAGATGCAAAAATCCCT 58.898 45.455 0.00 0.00 34.07 4.20
3348 8926 5.356751 TCGATGGGTTTGGTTATTTCTGATG 59.643 40.000 0.00 0.00 0.00 3.07
3415 9011 2.749441 GCTTGGCAGCTCACTCCC 60.749 66.667 0.00 0.00 43.51 4.30
3593 9203 6.372659 TGACACTTTCTGCAAAGAGGATATTC 59.627 38.462 5.15 0.00 41.60 1.75
3597 9207 4.090761 TGACACTTTCTGCAAAGAGGAT 57.909 40.909 5.15 0.00 41.60 3.24
3819 10816 3.010200 ACTCTCATTTGATCTTGGGGC 57.990 47.619 0.00 0.00 0.00 5.80
3871 10882 9.912634 GATGAAATGAACTGAAAGAATGGTTTA 57.087 29.630 0.00 0.00 37.43 2.01
3878 10889 6.772233 TCACCAGATGAAATGAACTGAAAGAA 59.228 34.615 0.00 0.00 33.34 2.52
4427 11450 5.199723 TGAATGGCATGGTAGCTTATTCAA 58.800 37.500 0.00 3.00 40.93 2.69
4478 11512 0.184933 AGGGGCTTTACTTGCACACA 59.815 50.000 0.00 0.00 35.15 3.72
4555 11597 0.253327 GGTTGGACCAGATCTGACCC 59.747 60.000 24.62 21.89 38.42 4.46
4591 11637 5.068723 CCATGCAATTTTGATAGCCTTCTCT 59.931 40.000 0.00 0.00 0.00 3.10
4658 11717 5.295292 AGGTGTTCAATGCATCTTTCTATCG 59.705 40.000 0.00 0.00 0.00 2.92
4755 11819 9.088512 GCTATATCAGTAAGTACATTGGCATAC 57.911 37.037 0.00 0.00 0.00 2.39
4863 11939 5.554822 TTTGACCGAGTTATAAATGGTGC 57.445 39.130 10.42 5.20 31.86 5.01
4879 11959 8.616076 CATTATAAGGTCTGTCTGAATTTGACC 58.384 37.037 0.00 0.00 45.31 4.02
4912 12000 7.799914 GCATTCCAACATTTGTCTGAATTTTTC 59.200 33.333 5.42 0.00 30.63 2.29
4983 12072 7.172703 CCTCACGTCAAAGGAAAAAGTTATACT 59.827 37.037 2.61 0.00 34.35 2.12
5052 12146 2.094545 GGCAAAGCAATGATCCTTCGTT 60.095 45.455 0.00 0.00 0.00 3.85
5258 12984 1.816863 ATGGAGACGTGACAGCGGTT 61.817 55.000 0.00 0.00 35.98 4.44
5264 12990 1.262417 TAGGCAATGGAGACGTGACA 58.738 50.000 0.00 0.00 0.00 3.58
5307 13033 2.897350 TCAGAAACTAGGTAGTGCCCA 58.103 47.619 0.00 0.00 36.50 5.36
5338 13065 0.394762 ATGATGTCGCACATTGGCCT 60.395 50.000 3.32 0.00 39.27 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.