Multiple sequence alignment - TraesCS3D01G014900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G014900 chr3D 100.000 4253 0 0 1 4253 5177386 5173134 0.000000e+00 7854.0
1 TraesCS3D01G014900 chr3D 93.158 3654 194 22 49 3678 9542450 9546071 0.000000e+00 5312.0
2 TraesCS3D01G014900 chr3D 86.975 238 20 6 3676 3911 9546112 9546340 1.520000e-64 257.0
3 TraesCS3D01G014900 chr3D 84.236 203 26 4 4044 4243 20567044 20566845 4.340000e-45 193.0
4 TraesCS3D01G014900 chr3D 95.161 62 3 0 7 68 9542391 9542452 9.730000e-17 99.0
5 TraesCS3D01G014900 chr3B 91.225 3305 220 28 568 3852 13731499 13734753 0.000000e+00 4433.0
6 TraesCS3D01G014900 chr3B 87.240 384 40 5 113 495 13729382 13729757 3.040000e-116 429.0
7 TraesCS3D01G014900 chr3A 91.314 1819 133 14 2106 3911 11676381 11674575 0.000000e+00 2460.0
8 TraesCS3D01G014900 chr3A 90.874 1819 134 17 2108 3911 11703826 11702025 0.000000e+00 2410.0
9 TraesCS3D01G014900 chr3A 88.133 1660 138 23 1 1635 11678462 11676837 0.000000e+00 1919.0
10 TraesCS3D01G014900 chr3A 88.140 1661 135 26 1 1635 11705908 11704284 0.000000e+00 1919.0
11 TraesCS3D01G014900 chr3A 87.940 1393 113 19 1 1372 11680526 11679168 0.000000e+00 1591.0
12 TraesCS3D01G014900 chr3A 89.591 269 26 1 1843 2109 11704135 11703867 1.460000e-89 340.0
13 TraesCS3D01G014900 chr3A 88.848 269 28 1 1843 2109 11676688 11676420 3.170000e-86 329.0
14 TraesCS3D01G014900 chr3A 93.711 159 10 0 1649 1807 11676849 11676691 5.500000e-59 239.0
15 TraesCS3D01G014900 chr3A 93.711 159 10 0 1649 1807 11704296 11704138 5.500000e-59 239.0
16 TraesCS3D01G014900 chr4B 82.452 416 60 9 1682 2092 598913264 598912857 6.770000e-93 351.0
17 TraesCS3D01G014900 chr4B 82.410 415 62 6 1682 2092 599169859 599169452 6.770000e-93 351.0
18 TraesCS3D01G014900 chr4B 77.760 625 91 21 941 1527 599170565 599169951 1.460000e-89 340.0
19 TraesCS3D01G014900 chr4B 77.310 617 92 30 949 1527 598913965 598913359 1.910000e-83 320.0
20 TraesCS3D01G014900 chr4B 87.817 197 24 0 1896 2092 598602352 598602156 9.200000e-57 231.0
21 TraesCS3D01G014900 chr4B 82.589 224 35 3 4021 4243 437135707 437135927 1.210000e-45 195.0
22 TraesCS3D01G014900 chr4B 86.395 147 17 3 1384 1527 14653486 14653340 1.580000e-34 158.0
23 TraesCS3D01G014900 chr4B 79.556 225 42 3 4021 4243 437115197 437115419 1.580000e-34 158.0
24 TraesCS3D01G014900 chr4B 96.875 32 1 0 1387 1418 15150207 15150176 2.000000e-03 54.7
25 TraesCS3D01G014900 chr4D 81.114 413 69 5 1683 2092 474700632 474700226 5.300000e-84 322.0
26 TraesCS3D01G014900 chr4D 93.069 101 6 1 1432 1532 8150925 8150826 3.430000e-31 147.0
27 TraesCS3D01G014900 chr4A 76.274 628 94 37 941 1527 681653158 681653771 2.500000e-72 283.0
28 TraesCS3D01G014900 chr2B 84.163 221 27 4 4021 4235 801082449 801082667 1.550000e-49 207.0
29 TraesCS3D01G014900 chr7D 92.683 41 3 0 4213 4253 19106665 19106625 4.590000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G014900 chr3D 5173134 5177386 4252 True 7854.000000 7854 100.000000 1 4253 1 chr3D.!!$R1 4252
1 TraesCS3D01G014900 chr3D 9542391 9546340 3949 False 1889.333333 5312 91.764667 7 3911 3 chr3D.!!$F1 3904
2 TraesCS3D01G014900 chr3B 13729382 13734753 5371 False 2431.000000 4433 89.232500 113 3852 2 chr3B.!!$F1 3739
3 TraesCS3D01G014900 chr3A 11674575 11680526 5951 True 1307.600000 2460 89.989200 1 3911 5 chr3A.!!$R1 3910
4 TraesCS3D01G014900 chr3A 11702025 11705908 3883 True 1227.000000 2410 90.579000 1 3911 4 chr3A.!!$R2 3910
5 TraesCS3D01G014900 chr4B 599169452 599170565 1113 True 345.500000 351 80.085000 941 2092 2 chr4B.!!$R5 1151
6 TraesCS3D01G014900 chr4B 598912857 598913965 1108 True 335.500000 351 79.881000 949 2092 2 chr4B.!!$R4 1143
7 TraesCS3D01G014900 chr4A 681653158 681653771 613 False 283.000000 283 76.274000 941 1527 1 chr4A.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 2525 0.315869 CGCGCTTGCTTATAAACCCG 60.316 55.0 5.56 0.0 36.08 5.28 F
1610 5457 0.181587 TCTTTTTGCTCGTGGGGTCA 59.818 50.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 5631 0.109342 CCAGCACCAAGGTCTCAACT 59.891 55.000 0.0 0.0 0.0 3.16 R
3606 7522 1.070577 CGCTTCATTTATTCTCCGCCG 60.071 52.381 0.0 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 147 2.813754 CAAAGGGATGTTGTGTCGTGAT 59.186 45.455 0.00 0.00 0.00 3.06
220 240 7.826918 ACTATCTCTAACAGGTGACTATTCC 57.173 40.000 0.00 0.00 40.21 3.01
221 241 5.776173 ATCTCTAACAGGTGACTATTCCG 57.224 43.478 0.00 0.00 40.21 4.30
235 258 6.253083 GTGACTATTCCGCAGTTCTTACTTAC 59.747 42.308 0.00 0.00 30.26 2.34
453 479 0.321653 GAACTGTCATTGGCCCGTCT 60.322 55.000 0.00 0.00 0.00 4.18
500 2161 1.136500 GGGTATAGCGCACCTATAGGC 59.864 57.143 19.25 4.80 39.16 3.93
509 2170 2.351726 CGCACCTATAGGCAGTTGTTTC 59.648 50.000 19.25 0.00 39.32 2.78
510 2171 3.343617 GCACCTATAGGCAGTTGTTTCA 58.656 45.455 19.25 0.00 39.32 2.69
511 2172 3.127030 GCACCTATAGGCAGTTGTTTCAC 59.873 47.826 19.25 0.00 39.32 3.18
512 2173 4.323417 CACCTATAGGCAGTTGTTTCACA 58.677 43.478 19.25 0.00 39.32 3.58
513 2174 4.759693 CACCTATAGGCAGTTGTTTCACAA 59.240 41.667 19.25 0.00 39.32 3.33
569 2234 1.460504 TCCACTAGTCCAGCTGTACG 58.539 55.000 13.81 0.00 0.00 3.67
613 2320 5.812642 CAGGAGAGTCCATTGTACACATAAC 59.187 44.000 0.00 0.00 39.61 1.89
643 2350 0.388659 ATGTTTGCGCAACCACATGT 59.611 45.000 30.02 15.01 33.97 3.21
719 2426 3.104512 ACCAGGATCCAACGACTCATTA 58.895 45.455 15.82 0.00 0.00 1.90
775 2482 1.377333 GGGGCCTTAGTGTGAGCAC 60.377 63.158 0.84 0.00 45.57 4.40
800 2507 0.452184 ATAGTGACAGAGTGGACGCG 59.548 55.000 3.53 3.53 0.00 6.01
818 2525 0.315869 CGCGCTTGCTTATAAACCCG 60.316 55.000 5.56 0.00 36.08 5.28
827 2535 5.769484 TGCTTATAAACCCGAGACTAGAG 57.231 43.478 0.00 0.00 0.00 2.43
892 2606 1.470979 CCCACCGATCGAGGTAAACAG 60.471 57.143 18.66 0.00 43.89 3.16
1009 2741 1.251527 ACGGAAGCTCATGGACGACT 61.252 55.000 0.00 0.00 0.00 4.18
1041 2773 1.303888 CCTGTTCATGCAGTGGGCT 60.304 57.895 0.00 0.00 45.15 5.19
1042 2774 1.310933 CCTGTTCATGCAGTGGGCTC 61.311 60.000 0.00 0.00 45.15 4.70
1082 2814 3.635510 GGATCAAGGAGGAGCCGT 58.364 61.111 0.00 0.00 43.43 5.68
1174 2924 3.376935 CTGAGCTCCGGCACCGATT 62.377 63.158 12.15 0.00 42.83 3.34
1329 5143 1.368850 GAACTTCAACGCGGCACAC 60.369 57.895 12.47 0.00 0.00 3.82
1380 5206 4.357947 AGAGCGCCGCTTCGTTCA 62.358 61.111 15.07 0.00 39.88 3.18
1389 5215 3.000080 GCTTCGTTCAGGCGTGTCG 62.000 63.158 6.26 12.26 0.00 4.35
1568 5404 3.777478 TCCACGTGTCCGAATATTTCTC 58.223 45.455 15.65 0.00 37.88 2.87
1571 5407 4.119862 CACGTGTCCGAATATTTCTCCAT 58.880 43.478 7.58 0.00 37.88 3.41
1592 5428 8.761575 TCCATGAAATGCATAGTTTTTCTTTC 57.238 30.769 0.00 0.00 44.97 2.62
1610 5457 0.181587 TCTTTTTGCTCGTGGGGTCA 59.818 50.000 0.00 0.00 0.00 4.02
1641 5488 5.730550 AGTTAATCTGTTAATGTCCTCGCA 58.269 37.500 0.00 0.00 32.76 5.10
1642 5489 6.170506 AGTTAATCTGTTAATGTCCTCGCAA 58.829 36.000 0.00 0.00 32.76 4.85
1794 5641 2.023501 AGCCATAGGAGAGTTGAGACCT 60.024 50.000 0.00 0.00 36.65 3.85
1861 5708 1.420138 TGAGGGGTCCAGTTTGTTCTC 59.580 52.381 0.00 0.00 0.00 2.87
2192 6084 2.854736 AGGGATGCTAGGCCAAAAAT 57.145 45.000 5.01 0.00 0.00 1.82
2210 6103 7.042950 CCAAAAATCTCACAATGGCATGATTA 58.957 34.615 0.00 0.00 0.00 1.75
2278 6176 0.324943 CCGAAACCAGACTCCACCAT 59.675 55.000 0.00 0.00 0.00 3.55
2280 6178 1.726853 GAAACCAGACTCCACCATCG 58.273 55.000 0.00 0.00 0.00 3.84
2305 6206 0.320374 AAACCAACGATCGAGAGCCA 59.680 50.000 24.34 0.00 0.00 4.75
2323 6224 3.459969 AGCCAAAAAGACCTAGGGATAGG 59.540 47.826 14.81 6.60 42.86 2.57
2411 6312 4.676951 CCAACGCCACCACCCCAT 62.677 66.667 0.00 0.00 0.00 4.00
2434 6335 6.244552 TCGAACATTAGGGAGACTAGACTA 57.755 41.667 0.00 0.00 32.16 2.59
2452 6353 2.424989 TACCCAGAGGCCCCTTGGAA 62.425 60.000 11.80 0.67 36.11 3.53
2700 6606 8.079809 TGGAAGTGGATTTTCGATTTTTCTAAC 58.920 33.333 0.00 0.00 0.00 2.34
2984 6896 9.021863 GTGTAGGAATAGTTGAACTTTAGATCG 57.978 37.037 1.97 0.00 0.00 3.69
3177 7091 0.178873 AGGTGGAGGAGGGCTTTACA 60.179 55.000 0.00 0.00 0.00 2.41
3285 7199 0.693049 AGCCCGAATGAAAGACCACT 59.307 50.000 0.00 0.00 0.00 4.00
3347 7263 5.181748 GCCTGCCTGAGTATATATTCAAGG 58.818 45.833 15.34 15.34 0.00 3.61
3381 7297 4.655963 TCTAAACTGCCTCAGAAAGCAAT 58.344 39.130 0.29 0.00 38.82 3.56
3487 7403 3.746492 GTGTTTTTCGGCTAGTGTCAGAT 59.254 43.478 0.00 0.00 0.00 2.90
3552 7468 2.039216 TGTTCGTTTTAGGGCATCTCCA 59.961 45.455 0.00 0.00 36.21 3.86
3606 7522 9.865321 ATTTGCCATGTAGAATTCATAATATGC 57.135 29.630 8.44 2.86 0.00 3.14
3607 7523 7.075674 TGCCATGTAGAATTCATAATATGCG 57.924 36.000 8.44 3.35 0.00 4.73
3698 7658 2.550830 TGTGGAAAACTGAGGCTCTC 57.449 50.000 16.72 4.05 0.00 3.20
3709 7669 3.237746 CTGAGGCTCTCTAATGATGGGA 58.762 50.000 16.72 0.00 0.00 4.37
3770 7739 3.243301 GCACACAATCTATTGGAGCCATG 60.243 47.826 7.56 0.00 41.96 3.66
3771 7740 4.201657 CACACAATCTATTGGAGCCATGA 58.798 43.478 7.56 0.00 41.96 3.07
3772 7741 4.641541 CACACAATCTATTGGAGCCATGAA 59.358 41.667 7.56 0.00 41.96 2.57
3773 7742 4.885907 ACACAATCTATTGGAGCCATGAAG 59.114 41.667 7.56 0.00 41.96 3.02
3774 7743 5.128205 CACAATCTATTGGAGCCATGAAGA 58.872 41.667 7.56 0.00 41.96 2.87
3775 7744 5.008415 CACAATCTATTGGAGCCATGAAGAC 59.992 44.000 7.56 0.00 41.96 3.01
3776 7745 3.845781 TCTATTGGAGCCATGAAGACC 57.154 47.619 0.00 0.00 0.00 3.85
3777 7746 3.114606 TCTATTGGAGCCATGAAGACCA 58.885 45.455 0.00 0.00 0.00 4.02
3778 7747 3.718434 TCTATTGGAGCCATGAAGACCAT 59.282 43.478 0.00 0.00 35.44 3.55
3823 7792 7.495606 ACTCATCATGCAAACATTATCTCGTAA 59.504 33.333 0.00 0.00 32.87 3.18
3852 7821 9.758651 ATACTCATTTGCATATCTTACGTAACA 57.241 29.630 3.29 0.00 0.00 2.41
3853 7822 8.487313 ACTCATTTGCATATCTTACGTAACAA 57.513 30.769 3.29 3.39 0.00 2.83
3896 7866 5.175859 ACCATTTTCATGTCTAGTGTACCG 58.824 41.667 0.00 0.00 0.00 4.02
3899 7869 6.538742 CCATTTTCATGTCTAGTGTACCGAAT 59.461 38.462 0.00 0.00 0.00 3.34
3903 7873 6.961359 TCATGTCTAGTGTACCGAATTTTG 57.039 37.500 0.00 0.00 0.00 2.44
3904 7874 6.460781 TCATGTCTAGTGTACCGAATTTTGT 58.539 36.000 0.00 0.00 0.00 2.83
3905 7875 6.367695 TCATGTCTAGTGTACCGAATTTTGTG 59.632 38.462 0.00 0.00 0.00 3.33
3906 7876 5.845103 TGTCTAGTGTACCGAATTTTGTGA 58.155 37.500 0.00 0.00 0.00 3.58
3907 7877 6.460781 TGTCTAGTGTACCGAATTTTGTGAT 58.539 36.000 0.00 0.00 0.00 3.06
3908 7878 7.604549 TGTCTAGTGTACCGAATTTTGTGATA 58.395 34.615 0.00 0.00 0.00 2.15
3909 7879 7.758076 TGTCTAGTGTACCGAATTTTGTGATAG 59.242 37.037 0.00 0.00 0.00 2.08
3910 7880 7.972277 GTCTAGTGTACCGAATTTTGTGATAGA 59.028 37.037 0.00 0.00 0.00 1.98
3911 7881 6.963049 AGTGTACCGAATTTTGTGATAGAC 57.037 37.500 0.00 0.00 0.00 2.59
3912 7882 6.698380 AGTGTACCGAATTTTGTGATAGACT 58.302 36.000 0.00 0.00 0.00 3.24
3913 7883 6.590292 AGTGTACCGAATTTTGTGATAGACTG 59.410 38.462 0.00 0.00 0.00 3.51
3914 7884 4.946784 ACCGAATTTTGTGATAGACTGC 57.053 40.909 0.00 0.00 0.00 4.40
3915 7885 4.323417 ACCGAATTTTGTGATAGACTGCA 58.677 39.130 0.00 0.00 0.00 4.41
3916 7886 4.393062 ACCGAATTTTGTGATAGACTGCAG 59.607 41.667 13.48 13.48 0.00 4.41
3917 7887 4.393062 CCGAATTTTGTGATAGACTGCAGT 59.607 41.667 21.88 21.88 0.00 4.40
3918 7888 5.580691 CCGAATTTTGTGATAGACTGCAGTA 59.419 40.000 21.73 5.36 0.00 2.74
3919 7889 6.258727 CCGAATTTTGTGATAGACTGCAGTAT 59.741 38.462 21.73 20.44 0.00 2.12
3920 7890 7.201644 CCGAATTTTGTGATAGACTGCAGTATT 60.202 37.037 21.73 13.86 0.00 1.89
3921 7891 7.637519 CGAATTTTGTGATAGACTGCAGTATTG 59.362 37.037 21.73 3.61 0.00 1.90
3922 7892 7.928307 ATTTTGTGATAGACTGCAGTATTGT 57.072 32.000 21.73 9.63 0.00 2.71
3923 7893 9.448438 AATTTTGTGATAGACTGCAGTATTGTA 57.552 29.630 21.73 9.62 0.00 2.41
3924 7894 9.618890 ATTTTGTGATAGACTGCAGTATTGTAT 57.381 29.630 21.73 13.97 0.00 2.29
3925 7895 8.424274 TTTGTGATAGACTGCAGTATTGTATG 57.576 34.615 21.73 0.00 0.00 2.39
3926 7896 6.515832 TGTGATAGACTGCAGTATTGTATGG 58.484 40.000 21.73 0.00 0.00 2.74
3927 7897 6.098266 TGTGATAGACTGCAGTATTGTATGGT 59.902 38.462 21.73 0.00 0.00 3.55
3928 7898 6.642950 GTGATAGACTGCAGTATTGTATGGTC 59.357 42.308 21.73 3.08 0.00 4.02
3929 7899 6.551227 TGATAGACTGCAGTATTGTATGGTCT 59.449 38.462 21.73 11.09 36.82 3.85
3930 7900 7.724061 TGATAGACTGCAGTATTGTATGGTCTA 59.276 37.037 21.73 12.98 38.71 2.59
3931 7901 6.398234 AGACTGCAGTATTGTATGGTCTAG 57.602 41.667 21.73 0.00 32.12 2.43
3932 7902 5.894393 AGACTGCAGTATTGTATGGTCTAGT 59.106 40.000 21.73 0.00 32.12 2.57
3933 7903 6.381420 AGACTGCAGTATTGTATGGTCTAGTT 59.619 38.462 21.73 0.00 32.12 2.24
3934 7904 6.341316 ACTGCAGTATTGTATGGTCTAGTTG 58.659 40.000 20.16 0.00 0.00 3.16
3935 7905 6.154534 ACTGCAGTATTGTATGGTCTAGTTGA 59.845 38.462 20.16 0.00 0.00 3.18
3936 7906 6.573434 TGCAGTATTGTATGGTCTAGTTGAG 58.427 40.000 0.00 0.00 0.00 3.02
3937 7907 5.463724 GCAGTATTGTATGGTCTAGTTGAGC 59.536 44.000 0.00 0.00 43.03 4.26
3938 7908 5.986135 CAGTATTGTATGGTCTAGTTGAGCC 59.014 44.000 1.35 0.00 42.12 4.70
3939 7909 5.661312 AGTATTGTATGGTCTAGTTGAGCCA 59.339 40.000 1.35 0.71 42.12 4.75
3940 7910 4.471904 TTGTATGGTCTAGTTGAGCCAG 57.528 45.455 1.35 0.00 42.12 4.85
3941 7911 2.766263 TGTATGGTCTAGTTGAGCCAGG 59.234 50.000 1.35 0.00 42.12 4.45
3942 7912 0.543749 ATGGTCTAGTTGAGCCAGGC 59.456 55.000 1.84 1.84 42.12 4.85
3943 7913 1.153549 GGTCTAGTTGAGCCAGGCG 60.154 63.158 5.55 0.00 37.22 5.52
3944 7914 1.605058 GGTCTAGTTGAGCCAGGCGA 61.605 60.000 5.55 0.00 37.22 5.54
3945 7915 0.246635 GTCTAGTTGAGCCAGGCGAA 59.753 55.000 5.55 0.00 0.00 4.70
3946 7916 0.246635 TCTAGTTGAGCCAGGCGAAC 59.753 55.000 17.62 17.62 0.00 3.95
3947 7917 0.741221 CTAGTTGAGCCAGGCGAACC 60.741 60.000 20.34 7.32 0.00 3.62
3948 7918 2.501223 TAGTTGAGCCAGGCGAACCG 62.501 60.000 20.34 0.00 42.76 4.44
3949 7919 4.697756 TTGAGCCAGGCGAACCGG 62.698 66.667 5.55 0.00 42.76 5.28
3954 7924 4.003788 CCAGGCGAACCGGTGAGT 62.004 66.667 8.52 0.00 42.76 3.41
3955 7925 2.432628 CAGGCGAACCGGTGAGTC 60.433 66.667 8.52 7.02 42.76 3.36
3956 7926 4.052229 AGGCGAACCGGTGAGTCG 62.052 66.667 20.25 20.25 42.76 4.18
3957 7927 4.353437 GGCGAACCGGTGAGTCGT 62.353 66.667 23.88 1.21 0.00 4.34
3958 7928 2.355481 GCGAACCGGTGAGTCGTT 60.355 61.111 23.88 0.43 0.00 3.85
3959 7929 2.654912 GCGAACCGGTGAGTCGTTG 61.655 63.158 23.88 6.79 0.00 4.10
3960 7930 1.008194 CGAACCGGTGAGTCGTTGA 60.008 57.895 17.12 0.00 0.00 3.18
3961 7931 1.002250 CGAACCGGTGAGTCGTTGAG 61.002 60.000 17.12 0.00 0.00 3.02
3962 7932 0.313043 GAACCGGTGAGTCGTTGAGA 59.687 55.000 8.52 0.00 0.00 3.27
3963 7933 0.966920 AACCGGTGAGTCGTTGAGAT 59.033 50.000 8.52 0.00 0.00 2.75
3964 7934 1.830279 ACCGGTGAGTCGTTGAGATA 58.170 50.000 6.12 0.00 0.00 1.98
3965 7935 1.743958 ACCGGTGAGTCGTTGAGATAG 59.256 52.381 6.12 0.00 0.00 2.08
3966 7936 1.065701 CCGGTGAGTCGTTGAGATAGG 59.934 57.143 0.00 0.00 0.00 2.57
3967 7937 1.743958 CGGTGAGTCGTTGAGATAGGT 59.256 52.381 0.00 0.00 0.00 3.08
3968 7938 2.163815 CGGTGAGTCGTTGAGATAGGTT 59.836 50.000 0.00 0.00 0.00 3.50
3969 7939 3.376234 CGGTGAGTCGTTGAGATAGGTTA 59.624 47.826 0.00 0.00 0.00 2.85
3970 7940 4.142534 CGGTGAGTCGTTGAGATAGGTTAA 60.143 45.833 0.00 0.00 0.00 2.01
3971 7941 5.100943 GGTGAGTCGTTGAGATAGGTTAAC 58.899 45.833 0.00 0.00 0.00 2.01
3972 7942 4.792189 GTGAGTCGTTGAGATAGGTTAACG 59.208 45.833 0.00 0.00 45.06 3.18
3973 7943 3.767278 AGTCGTTGAGATAGGTTAACGC 58.233 45.455 0.00 0.00 43.83 4.84
3974 7944 2.856557 GTCGTTGAGATAGGTTAACGCC 59.143 50.000 0.00 0.00 43.83 5.68
3975 7945 1.850441 CGTTGAGATAGGTTAACGCCG 59.150 52.381 0.00 0.00 39.27 6.46
3976 7946 1.591619 GTTGAGATAGGTTAACGCCGC 59.408 52.381 0.00 0.00 0.00 6.53
3977 7947 0.818938 TGAGATAGGTTAACGCCGCA 59.181 50.000 0.00 0.00 0.00 5.69
3978 7948 1.202371 TGAGATAGGTTAACGCCGCAG 60.202 52.381 0.00 0.00 0.00 5.18
3979 7949 0.529992 AGATAGGTTAACGCCGCAGC 60.530 55.000 0.00 0.00 0.00 5.25
3980 7950 0.529992 GATAGGTTAACGCCGCAGCT 60.530 55.000 0.00 0.00 36.60 4.24
3981 7951 0.748450 ATAGGTTAACGCCGCAGCTA 59.252 50.000 0.00 0.00 36.60 3.32
3982 7952 0.748450 TAGGTTAACGCCGCAGCTAT 59.252 50.000 0.00 0.00 36.60 2.97
3983 7953 0.810031 AGGTTAACGCCGCAGCTATG 60.810 55.000 0.00 0.00 36.60 2.23
3996 7966 3.670311 CAGCTATGCATGTGTGAGTTC 57.330 47.619 10.16 0.00 0.00 3.01
3997 7967 2.030091 CAGCTATGCATGTGTGAGTTCG 59.970 50.000 10.16 0.00 0.00 3.95
3998 7968 2.002586 GCTATGCATGTGTGAGTTCGT 58.997 47.619 10.16 0.00 0.00 3.85
3999 7969 2.416547 GCTATGCATGTGTGAGTTCGTT 59.583 45.455 10.16 0.00 0.00 3.85
4000 7970 2.975410 ATGCATGTGTGAGTTCGTTG 57.025 45.000 0.00 0.00 0.00 4.10
4001 7971 0.943673 TGCATGTGTGAGTTCGTTGG 59.056 50.000 0.00 0.00 0.00 3.77
4002 7972 0.385974 GCATGTGTGAGTTCGTTGGC 60.386 55.000 0.00 0.00 0.00 4.52
4003 7973 0.943673 CATGTGTGAGTTCGTTGGCA 59.056 50.000 0.00 0.00 0.00 4.92
4004 7974 1.536766 CATGTGTGAGTTCGTTGGCAT 59.463 47.619 0.00 0.00 0.00 4.40
4005 7975 0.943673 TGTGTGAGTTCGTTGGCATG 59.056 50.000 0.00 0.00 0.00 4.06
4006 7976 0.238289 GTGTGAGTTCGTTGGCATGG 59.762 55.000 0.00 0.00 0.00 3.66
4007 7977 0.107643 TGTGAGTTCGTTGGCATGGA 59.892 50.000 0.00 0.00 0.00 3.41
4008 7978 0.517316 GTGAGTTCGTTGGCATGGAC 59.483 55.000 0.00 0.00 0.00 4.02
4009 7979 0.948623 TGAGTTCGTTGGCATGGACG 60.949 55.000 3.89 3.89 40.43 4.79
4010 7980 0.949105 GAGTTCGTTGGCATGGACGT 60.949 55.000 9.72 0.00 40.03 4.34
4011 7981 1.206578 GTTCGTTGGCATGGACGTG 59.793 57.895 9.72 0.00 40.03 4.49
4012 7982 2.612567 TTCGTTGGCATGGACGTGC 61.613 57.895 9.72 7.96 44.31 5.34
4013 7983 3.049674 CGTTGGCATGGACGTGCT 61.050 61.111 15.32 0.00 44.45 4.40
4014 7984 2.616330 CGTTGGCATGGACGTGCTT 61.616 57.895 15.32 0.00 44.45 3.91
4015 7985 1.659794 GTTGGCATGGACGTGCTTT 59.340 52.632 15.32 0.00 44.45 3.51
4016 7986 0.664166 GTTGGCATGGACGTGCTTTG 60.664 55.000 15.32 7.39 44.45 2.77
4017 7987 1.106351 TTGGCATGGACGTGCTTTGT 61.106 50.000 15.32 0.00 44.45 2.83
4018 7988 1.210155 GGCATGGACGTGCTTTGTC 59.790 57.895 15.32 3.97 44.45 3.18
4019 7989 1.154413 GCATGGACGTGCTTTGTCG 60.154 57.895 8.99 0.00 41.82 4.35
4020 7990 1.565156 GCATGGACGTGCTTTGTCGA 61.565 55.000 8.99 0.00 41.82 4.20
4021 7991 1.078709 CATGGACGTGCTTTGTCGAT 58.921 50.000 8.99 0.00 37.22 3.59
4022 7992 1.078709 ATGGACGTGCTTTGTCGATG 58.921 50.000 8.99 0.00 34.14 3.84
4023 7993 1.132640 GGACGTGCTTTGTCGATGC 59.867 57.895 0.00 0.00 37.22 3.91
4024 7994 1.565156 GGACGTGCTTTGTCGATGCA 61.565 55.000 0.00 0.00 37.22 3.96
4026 7996 4.422506 GTGCTTTGTCGATGCACG 57.577 55.556 13.66 0.00 45.63 5.34
4027 7997 1.569493 GTGCTTTGTCGATGCACGT 59.431 52.632 13.66 0.00 45.63 4.49
4028 7998 0.451135 GTGCTTTGTCGATGCACGTC 60.451 55.000 13.66 4.36 45.63 4.34
4029 7999 0.878086 TGCTTTGTCGATGCACGTCA 60.878 50.000 8.22 6.57 43.13 4.35
4030 8000 0.443869 GCTTTGTCGATGCACGTCAT 59.556 50.000 8.69 0.00 43.13 3.06
4031 8001 1.135972 GCTTTGTCGATGCACGTCATT 60.136 47.619 8.69 0.00 43.13 2.57
4032 8002 2.093625 GCTTTGTCGATGCACGTCATTA 59.906 45.455 8.69 2.41 43.13 1.90
4033 8003 3.782250 GCTTTGTCGATGCACGTCATTAG 60.782 47.826 8.69 9.81 43.13 1.73
4034 8004 1.277326 TGTCGATGCACGTCATTAGC 58.723 50.000 8.22 0.00 43.13 3.09
4035 8005 0.577269 GTCGATGCACGTCATTAGCC 59.423 55.000 8.22 0.00 43.13 3.93
4036 8006 0.869880 TCGATGCACGTCATTAGCCG 60.870 55.000 8.22 0.00 43.13 5.52
4037 8007 1.821241 CGATGCACGTCATTAGCCGG 61.821 60.000 0.00 0.00 35.05 6.13
4038 8008 0.810031 GATGCACGTCATTAGCCGGT 60.810 55.000 1.90 0.00 35.05 5.28
4039 8009 1.089481 ATGCACGTCATTAGCCGGTG 61.089 55.000 1.90 0.00 29.16 4.94
4040 8010 2.461110 GCACGTCATTAGCCGGTGG 61.461 63.158 1.90 0.00 0.00 4.61
4041 8011 1.216977 CACGTCATTAGCCGGTGGA 59.783 57.895 1.90 0.00 0.00 4.02
4042 8012 0.806102 CACGTCATTAGCCGGTGGAG 60.806 60.000 1.90 0.00 0.00 3.86
4043 8013 1.227263 CGTCATTAGCCGGTGGAGG 60.227 63.158 1.90 0.00 0.00 4.30
4044 8014 1.905512 GTCATTAGCCGGTGGAGGT 59.094 57.895 1.90 0.00 0.00 3.85
4045 8015 0.252197 GTCATTAGCCGGTGGAGGTT 59.748 55.000 1.90 0.00 0.00 3.50
4046 8016 0.251916 TCATTAGCCGGTGGAGGTTG 59.748 55.000 1.90 0.00 0.00 3.77
4047 8017 1.077716 ATTAGCCGGTGGAGGTTGC 60.078 57.895 1.90 0.00 0.00 4.17
4048 8018 1.847798 ATTAGCCGGTGGAGGTTGCA 61.848 55.000 1.90 0.00 0.00 4.08
4049 8019 1.847798 TTAGCCGGTGGAGGTTGCAT 61.848 55.000 1.90 0.00 0.00 3.96
4050 8020 2.535485 TAGCCGGTGGAGGTTGCATG 62.535 60.000 1.90 0.00 0.00 4.06
4051 8021 2.034066 CCGGTGGAGGTTGCATGT 59.966 61.111 0.00 0.00 0.00 3.21
4052 8022 1.298340 CCGGTGGAGGTTGCATGTA 59.702 57.895 0.00 0.00 0.00 2.29
4053 8023 0.744414 CCGGTGGAGGTTGCATGTAG 60.744 60.000 0.00 0.00 0.00 2.74
4054 8024 0.249120 CGGTGGAGGTTGCATGTAGA 59.751 55.000 0.00 0.00 0.00 2.59
4055 8025 1.338674 CGGTGGAGGTTGCATGTAGAA 60.339 52.381 0.00 0.00 0.00 2.10
4056 8026 2.359900 GGTGGAGGTTGCATGTAGAAG 58.640 52.381 0.00 0.00 0.00 2.85
4057 8027 2.027192 GGTGGAGGTTGCATGTAGAAGA 60.027 50.000 0.00 0.00 0.00 2.87
4058 8028 3.559171 GGTGGAGGTTGCATGTAGAAGAA 60.559 47.826 0.00 0.00 0.00 2.52
4059 8029 4.265073 GTGGAGGTTGCATGTAGAAGAAT 58.735 43.478 0.00 0.00 0.00 2.40
4060 8030 4.702131 GTGGAGGTTGCATGTAGAAGAATT 59.298 41.667 0.00 0.00 0.00 2.17
4061 8031 5.880332 GTGGAGGTTGCATGTAGAAGAATTA 59.120 40.000 0.00 0.00 0.00 1.40
4062 8032 6.037610 GTGGAGGTTGCATGTAGAAGAATTAG 59.962 42.308 0.00 0.00 0.00 1.73
4063 8033 6.116126 GGAGGTTGCATGTAGAAGAATTAGT 58.884 40.000 0.00 0.00 0.00 2.24
4064 8034 6.037610 GGAGGTTGCATGTAGAAGAATTAGTG 59.962 42.308 0.00 0.00 0.00 2.74
4065 8035 5.882557 AGGTTGCATGTAGAAGAATTAGTGG 59.117 40.000 0.00 0.00 0.00 4.00
4066 8036 5.880332 GGTTGCATGTAGAAGAATTAGTGGA 59.120 40.000 0.00 0.00 0.00 4.02
4067 8037 6.037610 GGTTGCATGTAGAAGAATTAGTGGAG 59.962 42.308 0.00 0.00 0.00 3.86
4068 8038 6.299805 TGCATGTAGAAGAATTAGTGGAGT 57.700 37.500 0.00 0.00 0.00 3.85
4069 8039 7.418337 TGCATGTAGAAGAATTAGTGGAGTA 57.582 36.000 0.00 0.00 0.00 2.59
4070 8040 7.492524 TGCATGTAGAAGAATTAGTGGAGTAG 58.507 38.462 0.00 0.00 0.00 2.57
4071 8041 7.124298 TGCATGTAGAAGAATTAGTGGAGTAGT 59.876 37.037 0.00 0.00 0.00 2.73
4072 8042 7.982354 GCATGTAGAAGAATTAGTGGAGTAGTT 59.018 37.037 0.00 0.00 0.00 2.24
4073 8043 9.307121 CATGTAGAAGAATTAGTGGAGTAGTTG 57.693 37.037 0.00 0.00 0.00 3.16
4074 8044 7.321153 TGTAGAAGAATTAGTGGAGTAGTTGC 58.679 38.462 0.00 0.00 0.00 4.17
4075 8045 6.360370 AGAAGAATTAGTGGAGTAGTTGCA 57.640 37.500 0.00 0.00 0.00 4.08
4082 8052 1.726791 GTGGAGTAGTTGCACATGACG 59.273 52.381 0.00 0.00 46.39 4.35
4083 8053 1.337728 TGGAGTAGTTGCACATGACGG 60.338 52.381 0.00 0.00 0.00 4.79
4084 8054 1.359848 GAGTAGTTGCACATGACGGG 58.640 55.000 0.00 0.00 0.00 5.28
4085 8055 0.685097 AGTAGTTGCACATGACGGGT 59.315 50.000 0.00 0.00 0.00 5.28
4086 8056 0.796312 GTAGTTGCACATGACGGGTG 59.204 55.000 0.00 0.00 39.25 4.61
4091 8061 4.521075 CACATGACGGGTGCCTAG 57.479 61.111 0.00 0.00 0.00 3.02
4092 8062 1.897423 CACATGACGGGTGCCTAGA 59.103 57.895 0.00 0.00 0.00 2.43
4093 8063 0.249120 CACATGACGGGTGCCTAGAA 59.751 55.000 0.00 0.00 0.00 2.10
4094 8064 0.981183 ACATGACGGGTGCCTAGAAA 59.019 50.000 0.00 0.00 0.00 2.52
4095 8065 1.066143 ACATGACGGGTGCCTAGAAAG 60.066 52.381 0.00 0.00 0.00 2.62
4096 8066 1.066143 CATGACGGGTGCCTAGAAAGT 60.066 52.381 0.00 0.00 0.00 2.66
4097 8067 0.320374 TGACGGGTGCCTAGAAAGTG 59.680 55.000 0.00 0.00 0.00 3.16
4098 8068 0.391263 GACGGGTGCCTAGAAAGTGG 60.391 60.000 0.00 0.00 0.00 4.00
4099 8069 0.834687 ACGGGTGCCTAGAAAGTGGA 60.835 55.000 0.00 0.00 0.00 4.02
4100 8070 0.541863 CGGGTGCCTAGAAAGTGGAT 59.458 55.000 0.00 0.00 0.00 3.41
4101 8071 1.473434 CGGGTGCCTAGAAAGTGGATC 60.473 57.143 0.00 0.00 0.00 3.36
4102 8072 1.559682 GGGTGCCTAGAAAGTGGATCA 59.440 52.381 0.00 0.00 0.00 2.92
4103 8073 2.173569 GGGTGCCTAGAAAGTGGATCAT 59.826 50.000 0.00 0.00 0.00 2.45
4104 8074 3.209410 GGTGCCTAGAAAGTGGATCATG 58.791 50.000 0.00 0.00 0.00 3.07
4105 8075 2.615912 GTGCCTAGAAAGTGGATCATGC 59.384 50.000 0.00 0.00 0.00 4.06
4106 8076 2.225467 GCCTAGAAAGTGGATCATGCC 58.775 52.381 0.00 0.00 0.00 4.40
4107 8077 2.487934 CCTAGAAAGTGGATCATGCCG 58.512 52.381 0.00 0.00 0.00 5.69
4108 8078 2.158900 CCTAGAAAGTGGATCATGCCGT 60.159 50.000 0.00 0.00 0.00 5.68
4109 8079 2.496899 AGAAAGTGGATCATGCCGTT 57.503 45.000 0.00 0.00 0.00 4.44
4110 8080 2.086869 AGAAAGTGGATCATGCCGTTG 58.913 47.619 0.00 0.00 0.00 4.10
4111 8081 1.133025 GAAAGTGGATCATGCCGTTGG 59.867 52.381 0.00 0.00 0.00 3.77
4124 8094 4.309950 GTTGGCCTCCGACCGTGT 62.310 66.667 3.32 0.00 31.94 4.49
4125 8095 4.308458 TTGGCCTCCGACCGTGTG 62.308 66.667 3.32 0.00 0.00 3.82
4127 8097 4.436998 GGCCTCCGACCGTGTGAG 62.437 72.222 0.00 0.00 0.00 3.51
4128 8098 3.681835 GCCTCCGACCGTGTGAGT 61.682 66.667 0.00 0.00 0.00 3.41
4129 8099 3.048602 CCTCCGACCGTGTGAGTT 58.951 61.111 0.00 0.00 0.00 3.01
4130 8100 1.870055 GCCTCCGACCGTGTGAGTTA 61.870 60.000 0.00 0.00 0.00 2.24
4131 8101 0.815734 CCTCCGACCGTGTGAGTTAT 59.184 55.000 0.00 0.00 0.00 1.89
4132 8102 2.019249 CCTCCGACCGTGTGAGTTATA 58.981 52.381 0.00 0.00 0.00 0.98
4133 8103 2.033049 CCTCCGACCGTGTGAGTTATAG 59.967 54.545 0.00 0.00 0.00 1.31
4134 8104 2.941064 CTCCGACCGTGTGAGTTATAGA 59.059 50.000 0.00 0.00 0.00 1.98
4135 8105 2.941064 TCCGACCGTGTGAGTTATAGAG 59.059 50.000 0.00 0.00 0.00 2.43
4136 8106 2.681848 CCGACCGTGTGAGTTATAGAGT 59.318 50.000 0.00 0.00 0.00 3.24
4137 8107 3.487042 CCGACCGTGTGAGTTATAGAGTG 60.487 52.174 0.00 0.00 0.00 3.51
4138 8108 3.373130 CGACCGTGTGAGTTATAGAGTGA 59.627 47.826 0.00 0.00 0.00 3.41
4139 8109 4.494362 CGACCGTGTGAGTTATAGAGTGAG 60.494 50.000 0.00 0.00 0.00 3.51
4140 8110 3.128938 ACCGTGTGAGTTATAGAGTGAGC 59.871 47.826 0.00 0.00 0.00 4.26
4141 8111 3.378742 CCGTGTGAGTTATAGAGTGAGCT 59.621 47.826 0.00 0.00 0.00 4.09
4142 8112 4.575236 CCGTGTGAGTTATAGAGTGAGCTA 59.425 45.833 0.00 0.00 0.00 3.32
4143 8113 5.066117 CCGTGTGAGTTATAGAGTGAGCTAA 59.934 44.000 0.00 0.00 0.00 3.09
4144 8114 6.195868 CGTGTGAGTTATAGAGTGAGCTAAG 58.804 44.000 0.00 0.00 0.00 2.18
4145 8115 6.500041 GTGTGAGTTATAGAGTGAGCTAAGG 58.500 44.000 0.00 0.00 0.00 2.69
4146 8116 6.319152 GTGTGAGTTATAGAGTGAGCTAAGGA 59.681 42.308 0.00 0.00 0.00 3.36
4147 8117 7.013846 GTGTGAGTTATAGAGTGAGCTAAGGAT 59.986 40.741 0.00 0.00 0.00 3.24
4148 8118 7.561722 TGTGAGTTATAGAGTGAGCTAAGGATT 59.438 37.037 0.00 0.00 0.00 3.01
4149 8119 9.069082 GTGAGTTATAGAGTGAGCTAAGGATTA 57.931 37.037 0.00 0.00 0.00 1.75
4164 8134 7.829378 CTAAGGATTAGTTGGTACTGTGAAC 57.171 40.000 0.00 0.00 43.60 3.18
4165 8135 4.817517 AGGATTAGTTGGTACTGTGAACG 58.182 43.478 0.00 0.00 35.78 3.95
4166 8136 4.282703 AGGATTAGTTGGTACTGTGAACGT 59.717 41.667 0.00 0.00 35.78 3.99
4167 8137 4.387862 GGATTAGTTGGTACTGTGAACGTG 59.612 45.833 0.00 0.00 35.78 4.49
4168 8138 2.973694 AGTTGGTACTGTGAACGTGT 57.026 45.000 0.00 0.00 31.99 4.49
4169 8139 2.546778 AGTTGGTACTGTGAACGTGTG 58.453 47.619 0.00 0.00 31.99 3.82
4170 8140 2.093869 AGTTGGTACTGTGAACGTGTGT 60.094 45.455 0.00 0.00 31.99 3.72
4171 8141 1.929230 TGGTACTGTGAACGTGTGTG 58.071 50.000 0.00 0.00 0.00 3.82
4172 8142 1.477295 TGGTACTGTGAACGTGTGTGA 59.523 47.619 0.00 0.00 0.00 3.58
4173 8143 2.124903 GGTACTGTGAACGTGTGTGAG 58.875 52.381 0.00 0.00 0.00 3.51
4174 8144 1.521423 GTACTGTGAACGTGTGTGAGC 59.479 52.381 0.00 0.00 0.00 4.26
4175 8145 0.810031 ACTGTGAACGTGTGTGAGCC 60.810 55.000 0.00 0.00 0.00 4.70
4176 8146 0.530650 CTGTGAACGTGTGTGAGCCT 60.531 55.000 0.00 0.00 0.00 4.58
4177 8147 0.809636 TGTGAACGTGTGTGAGCCTG 60.810 55.000 0.00 0.00 0.00 4.85
4178 8148 0.810031 GTGAACGTGTGTGAGCCTGT 60.810 55.000 0.00 0.00 0.00 4.00
4179 8149 0.107897 TGAACGTGTGTGAGCCTGTT 60.108 50.000 0.00 0.00 0.00 3.16
4180 8150 0.304705 GAACGTGTGTGAGCCTGTTG 59.695 55.000 0.00 0.00 0.00 3.33
4181 8151 0.392461 AACGTGTGTGAGCCTGTTGT 60.392 50.000 0.00 0.00 0.00 3.32
4182 8152 0.462375 ACGTGTGTGAGCCTGTTGTA 59.538 50.000 0.00 0.00 0.00 2.41
4183 8153 0.859232 CGTGTGTGAGCCTGTTGTAC 59.141 55.000 0.00 0.00 0.00 2.90
4184 8154 1.538204 CGTGTGTGAGCCTGTTGTACT 60.538 52.381 0.00 0.00 0.00 2.73
4185 8155 2.287970 CGTGTGTGAGCCTGTTGTACTA 60.288 50.000 0.00 0.00 0.00 1.82
4186 8156 3.318017 GTGTGTGAGCCTGTTGTACTAG 58.682 50.000 0.00 0.00 0.00 2.57
4187 8157 2.963101 TGTGTGAGCCTGTTGTACTAGT 59.037 45.455 0.00 0.00 0.00 2.57
4188 8158 4.022589 GTGTGTGAGCCTGTTGTACTAGTA 60.023 45.833 0.00 0.00 0.00 1.82
4189 8159 4.022589 TGTGTGAGCCTGTTGTACTAGTAC 60.023 45.833 23.58 23.58 36.63 2.73
4190 8160 3.508793 TGTGAGCCTGTTGTACTAGTACC 59.491 47.826 26.41 14.68 35.26 3.34
4191 8161 3.762823 GTGAGCCTGTTGTACTAGTACCT 59.237 47.826 26.41 16.40 35.26 3.08
4192 8162 4.946157 GTGAGCCTGTTGTACTAGTACCTA 59.054 45.833 26.41 14.11 35.26 3.08
4193 8163 5.593502 GTGAGCCTGTTGTACTAGTACCTAT 59.406 44.000 26.41 8.64 35.26 2.57
4194 8164 6.096564 GTGAGCCTGTTGTACTAGTACCTATT 59.903 42.308 26.41 8.82 35.26 1.73
4195 8165 6.666546 TGAGCCTGTTGTACTAGTACCTATTT 59.333 38.462 26.41 9.26 35.26 1.40
4196 8166 7.179694 TGAGCCTGTTGTACTAGTACCTATTTT 59.820 37.037 26.41 9.82 35.26 1.82
4197 8167 7.914859 AGCCTGTTGTACTAGTACCTATTTTT 58.085 34.615 26.41 8.29 35.26 1.94
4198 8168 9.039165 AGCCTGTTGTACTAGTACCTATTTTTA 57.961 33.333 26.41 6.03 35.26 1.52
4199 8169 9.657419 GCCTGTTGTACTAGTACCTATTTTTAA 57.343 33.333 26.41 11.31 35.26 1.52
4224 8194 7.211966 ACTGAACAAATGAATGAGAAAGAGG 57.788 36.000 0.00 0.00 0.00 3.69
4225 8195 6.017400 TGAACAAATGAATGAGAAAGAGGC 57.983 37.500 0.00 0.00 0.00 4.70
4226 8196 5.047802 TGAACAAATGAATGAGAAAGAGGCC 60.048 40.000 0.00 0.00 0.00 5.19
4227 8197 3.441572 ACAAATGAATGAGAAAGAGGCCG 59.558 43.478 0.00 0.00 0.00 6.13
4228 8198 3.356529 AATGAATGAGAAAGAGGCCGT 57.643 42.857 0.00 0.00 0.00 5.68
4229 8199 2.099141 TGAATGAGAAAGAGGCCGTG 57.901 50.000 0.00 0.00 0.00 4.94
4230 8200 1.623311 TGAATGAGAAAGAGGCCGTGA 59.377 47.619 0.00 0.00 0.00 4.35
4231 8201 2.275318 GAATGAGAAAGAGGCCGTGAG 58.725 52.381 0.00 0.00 0.00 3.51
4243 8213 4.285851 CGTGAGGGCTGGAGAAAC 57.714 61.111 0.00 0.00 0.00 2.78
4244 8214 1.376037 CGTGAGGGCTGGAGAAACC 60.376 63.158 0.00 0.00 39.54 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 147 0.032952 CCGAGTTCCGTTTCACAGGA 59.967 55.000 0.00 0.00 36.31 3.86
220 240 4.439837 GGACCCTAGTAAGTAAGAACTGCG 60.440 50.000 0.00 0.00 35.62 5.18
221 241 4.710865 AGGACCCTAGTAAGTAAGAACTGC 59.289 45.833 0.00 0.00 35.62 4.40
453 479 1.304052 CCCTCCACGATGGCCAAAA 60.304 57.895 10.96 0.00 37.47 2.44
482 508 2.492484 ACTGCCTATAGGTGCGCTATAC 59.508 50.000 20.10 0.00 37.57 1.47
500 2161 5.411053 ACCAATGGTTTTTGTGAAACAACTG 59.589 36.000 0.00 0.00 46.28 3.16
509 2170 7.443575 TCATCCAAAATACCAATGGTTTTTGTG 59.556 33.333 28.96 24.83 39.30 3.33
510 2171 7.512992 TCATCCAAAATACCAATGGTTTTTGT 58.487 30.769 28.96 19.43 39.30 2.83
511 2172 7.976135 TCATCCAAAATACCAATGGTTTTTG 57.024 32.000 27.01 27.01 37.05 2.44
512 2173 9.230122 GAATCATCCAAAATACCAATGGTTTTT 57.770 29.630 11.41 12.85 38.20 1.94
513 2174 8.381636 TGAATCATCCAAAATACCAATGGTTTT 58.618 29.630 11.41 6.21 37.09 2.43
569 2234 4.505922 CCTGTTGTCGAGATTAAGATCAGC 59.494 45.833 0.00 0.00 34.60 4.26
613 2320 5.294248 GTTGCGCAAACATACAAAATTACG 58.706 37.500 26.87 0.00 38.75 3.18
643 2350 7.011499 TCTAGACACCAGCAAATTAAAGGTA 57.989 36.000 0.00 0.00 0.00 3.08
689 2396 2.173569 GTTGGATCCTGGTTATCTGGCT 59.826 50.000 14.23 0.00 34.80 4.75
719 2426 4.991789 AATGGGCCAACCTTAAACAAAT 57.008 36.364 11.89 0.00 41.11 2.32
775 2482 4.437524 CGTCCACTCTGTCACTATAGTGTG 60.438 50.000 27.83 18.67 45.76 3.82
800 2507 1.003866 CTCGGGTTTATAAGCAAGCGC 60.004 52.381 0.00 0.00 38.99 5.92
806 2513 4.559099 GCCTCTAGTCTCGGGTTTATAAGC 60.559 50.000 0.00 0.00 0.00 3.09
818 2525 1.116308 GGAACCTGGCCTCTAGTCTC 58.884 60.000 3.32 0.00 0.00 3.36
827 2535 0.475906 AGATGCTATGGAACCTGGCC 59.524 55.000 0.00 0.00 0.00 5.36
892 2606 1.389106 GAACGATGCGTGTAGTGGAAC 59.611 52.381 0.00 0.00 39.99 3.62
995 2727 0.247736 GTCCAAGTCGTCCATGAGCT 59.752 55.000 0.00 0.00 0.00 4.09
1009 2741 1.340248 GAACAGGAGTGAGTCGTCCAA 59.660 52.381 12.65 0.00 35.02 3.53
1041 2773 1.665916 GTTCTGCAGCGTGCTCAGA 60.666 57.895 9.47 15.35 45.31 3.27
1042 2774 2.858868 GTTCTGCAGCGTGCTCAG 59.141 61.111 9.47 12.27 45.31 3.35
1057 2789 1.007238 TCCTCCTTGATCCTCCTCGTT 59.993 52.381 0.00 0.00 0.00 3.85
1082 2814 2.172483 GAAGCCAGCCCTGTTCTCGA 62.172 60.000 0.00 0.00 0.00 4.04
1121 2871 3.528370 CGAGCTCCGGGGAATCGT 61.528 66.667 18.38 0.00 32.34 3.73
1122 2872 4.951963 GCGAGCTCCGGGGAATCG 62.952 72.222 21.35 21.35 39.04 3.34
1123 2873 4.951963 CGCGAGCTCCGGGGAATC 62.952 72.222 4.80 0.00 45.94 2.52
1181 2931 1.068083 CTGATGATCCCACCGTCGG 59.932 63.158 10.48 10.48 0.00 4.79
1184 2934 2.746375 GGGCTGATGATCCCACCGT 61.746 63.158 0.00 0.00 42.18 4.83
1347 5173 2.507102 CTCGCAGCCTGTGTACCG 60.507 66.667 4.99 0.00 0.00 4.02
1350 5176 2.573869 GCTCTCGCAGCCTGTGTA 59.426 61.111 4.99 0.00 43.17 2.90
1362 5188 3.546397 GAACGAAGCGGCGCTCTC 61.546 66.667 36.44 28.95 38.25 3.20
1527 5353 0.822121 AAAACACGGGGAAGTCAGGC 60.822 55.000 0.00 0.00 0.00 4.85
1528 5354 1.607148 GAAAAACACGGGGAAGTCAGG 59.393 52.381 0.00 0.00 0.00 3.86
1568 5404 8.767478 AGAAAGAAAAACTATGCATTTCATGG 57.233 30.769 3.54 0.00 39.31 3.66
1592 5428 1.028905 TTGACCCCACGAGCAAAAAG 58.971 50.000 0.00 0.00 0.00 2.27
1784 5631 0.109342 CCAGCACCAAGGTCTCAACT 59.891 55.000 0.00 0.00 0.00 3.16
1794 5641 3.160585 CTCCCTGACCAGCACCAA 58.839 61.111 0.00 0.00 0.00 3.67
1828 5675 2.125552 CCTCATCGCTGTTCGGCA 60.126 61.111 4.50 0.00 39.05 5.69
2123 6014 7.696453 GTCTTGATAAAATCACACAAATACCCG 59.304 37.037 0.00 0.00 39.39 5.28
2192 6084 6.774170 AGCTAATTAATCATGCCATTGTGAGA 59.226 34.615 0.00 0.00 0.00 3.27
2210 6103 8.059798 AGAGTTTTGCATGATTGTAGCTAATT 57.940 30.769 0.00 0.00 0.00 1.40
2278 6176 1.996898 CGATCGTTGGTTTGGAATCGA 59.003 47.619 7.03 0.00 32.74 3.59
2280 6178 3.259064 TCTCGATCGTTGGTTTGGAATC 58.741 45.455 15.94 0.00 0.00 2.52
2305 6206 4.706616 TCACCCTATCCCTAGGTCTTTTT 58.293 43.478 8.29 0.00 42.78 1.94
2323 6224 3.994392 TGTTGTCGAATAGCTTCTTCACC 59.006 43.478 0.00 0.00 0.00 4.02
2411 6312 5.113446 AGTCTAGTCTCCCTAATGTTCGA 57.887 43.478 0.00 0.00 0.00 3.71
2434 6335 3.829311 TTCCAAGGGGCCTCTGGGT 62.829 63.158 26.61 0.00 34.45 4.51
2452 6353 5.070823 TCTATTCGTCCTAGTTATGGGGT 57.929 43.478 0.00 0.00 0.00 4.95
2984 6896 4.153411 AGTAGTGACATACTATGGCCTCC 58.847 47.826 3.32 0.00 43.44 4.30
3177 7091 5.188555 TCTCACTATTTCCTCTGCATTGACT 59.811 40.000 0.00 0.00 0.00 3.41
3217 7131 4.220693 TGTTGCAGCTATCTTGGTACAT 57.779 40.909 1.17 0.00 39.30 2.29
3285 7199 8.733458 CAATCTGAGATGTTTAATCTGTCCAAA 58.267 33.333 0.00 0.00 0.00 3.28
3347 7263 2.096013 GCAGTTTAGAATGAAGACCCGC 59.904 50.000 0.00 0.00 0.00 6.13
3487 7403 7.144661 CACAACAGACTTTATTAAACATGGCA 58.855 34.615 0.00 0.00 0.00 4.92
3552 7468 4.442706 CAACAGTTAACTCACCACTCTGT 58.557 43.478 4.77 0.00 36.45 3.41
3603 7519 2.254546 TCATTTATTCTCCGCCGCAT 57.745 45.000 0.00 0.00 0.00 4.73
3605 7521 1.334149 GCTTCATTTATTCTCCGCCGC 60.334 52.381 0.00 0.00 0.00 6.53
3606 7522 1.070577 CGCTTCATTTATTCTCCGCCG 60.071 52.381 0.00 0.00 0.00 6.46
3607 7523 2.210116 TCGCTTCATTTATTCTCCGCC 58.790 47.619 0.00 0.00 0.00 6.13
3698 7658 5.464722 CGTTCTCAACTGATCCCATCATTAG 59.535 44.000 0.00 0.00 38.85 1.73
3770 7739 7.665690 TCTATTCTAGCTGATTCATGGTCTTC 58.334 38.462 0.00 0.00 0.00 2.87
3771 7740 7.609097 TCTATTCTAGCTGATTCATGGTCTT 57.391 36.000 0.00 0.00 0.00 3.01
3772 7741 7.609097 TTCTATTCTAGCTGATTCATGGTCT 57.391 36.000 0.00 0.00 0.00 3.85
3773 7742 7.930865 AGTTTCTATTCTAGCTGATTCATGGTC 59.069 37.037 0.00 0.00 0.00 4.02
3774 7743 7.800092 AGTTTCTATTCTAGCTGATTCATGGT 58.200 34.615 0.00 0.00 0.00 3.55
3775 7744 7.930325 TGAGTTTCTATTCTAGCTGATTCATGG 59.070 37.037 0.00 0.00 0.00 3.66
3776 7745 8.883954 TGAGTTTCTATTCTAGCTGATTCATG 57.116 34.615 0.00 0.00 0.00 3.07
3777 7746 9.709495 GATGAGTTTCTATTCTAGCTGATTCAT 57.291 33.333 0.00 0.00 0.00 2.57
3778 7747 8.699130 TGATGAGTTTCTATTCTAGCTGATTCA 58.301 33.333 0.00 0.00 0.00 2.57
3874 7844 5.416083 TCGGTACACTAGACATGAAAATGG 58.584 41.667 0.00 0.00 0.00 3.16
3894 7864 4.393062 ACTGCAGTCTATCACAAAATTCGG 59.607 41.667 15.25 0.00 0.00 4.30
3896 7866 8.454106 ACAATACTGCAGTCTATCACAAAATTC 58.546 33.333 25.56 0.00 0.00 2.17
3899 7869 8.882736 CATACAATACTGCAGTCTATCACAAAA 58.117 33.333 25.56 1.08 0.00 2.44
3903 7873 6.516718 ACCATACAATACTGCAGTCTATCAC 58.483 40.000 25.56 0.00 0.00 3.06
3904 7874 6.551227 AGACCATACAATACTGCAGTCTATCA 59.449 38.462 25.56 5.51 0.00 2.15
3905 7875 6.987386 AGACCATACAATACTGCAGTCTATC 58.013 40.000 25.56 9.08 0.00 2.08
3906 7876 6.985653 AGACCATACAATACTGCAGTCTAT 57.014 37.500 25.56 9.79 0.00 1.98
3907 7877 7.061054 ACTAGACCATACAATACTGCAGTCTA 58.939 38.462 25.56 13.14 0.00 2.59
3908 7878 5.894393 ACTAGACCATACAATACTGCAGTCT 59.106 40.000 25.56 11.51 0.00 3.24
3909 7879 6.150396 ACTAGACCATACAATACTGCAGTC 57.850 41.667 25.56 4.85 0.00 3.51
3910 7880 6.154534 TCAACTAGACCATACAATACTGCAGT 59.845 38.462 25.12 25.12 0.00 4.40
3911 7881 6.573434 TCAACTAGACCATACAATACTGCAG 58.427 40.000 13.48 13.48 0.00 4.41
3912 7882 6.538945 TCAACTAGACCATACAATACTGCA 57.461 37.500 0.00 0.00 0.00 4.41
3913 7883 5.463724 GCTCAACTAGACCATACAATACTGC 59.536 44.000 0.00 0.00 0.00 4.40
3914 7884 5.986135 GGCTCAACTAGACCATACAATACTG 59.014 44.000 0.00 0.00 0.00 2.74
3915 7885 5.661312 TGGCTCAACTAGACCATACAATACT 59.339 40.000 0.00 0.00 28.59 2.12
3916 7886 5.914033 TGGCTCAACTAGACCATACAATAC 58.086 41.667 0.00 0.00 28.59 1.89
3917 7887 5.070446 CCTGGCTCAACTAGACCATACAATA 59.930 44.000 0.00 0.00 32.96 1.90
3918 7888 4.141620 CCTGGCTCAACTAGACCATACAAT 60.142 45.833 0.00 0.00 32.96 2.71
3919 7889 3.197766 CCTGGCTCAACTAGACCATACAA 59.802 47.826 0.00 0.00 32.96 2.41
3920 7890 2.766263 CCTGGCTCAACTAGACCATACA 59.234 50.000 0.00 0.00 32.96 2.29
3921 7891 2.483889 GCCTGGCTCAACTAGACCATAC 60.484 54.545 12.43 0.00 32.96 2.39
3922 7892 1.762957 GCCTGGCTCAACTAGACCATA 59.237 52.381 12.43 0.00 32.96 2.74
3923 7893 0.543749 GCCTGGCTCAACTAGACCAT 59.456 55.000 12.43 0.00 32.96 3.55
3924 7894 1.888436 CGCCTGGCTCAACTAGACCA 61.888 60.000 17.92 0.00 28.59 4.02
3925 7895 1.153549 CGCCTGGCTCAACTAGACC 60.154 63.158 17.92 0.00 28.59 3.85
3926 7896 0.246635 TTCGCCTGGCTCAACTAGAC 59.753 55.000 17.92 0.00 0.00 2.59
3927 7897 0.246635 GTTCGCCTGGCTCAACTAGA 59.753 55.000 17.92 1.25 0.00 2.43
3928 7898 0.741221 GGTTCGCCTGGCTCAACTAG 60.741 60.000 22.30 5.89 0.00 2.57
3929 7899 1.295423 GGTTCGCCTGGCTCAACTA 59.705 57.895 22.30 0.02 0.00 2.24
3930 7900 2.032681 GGTTCGCCTGGCTCAACT 59.967 61.111 22.30 0.00 0.00 3.16
3931 7901 3.423154 CGGTTCGCCTGGCTCAAC 61.423 66.667 17.92 17.73 34.30 3.18
3932 7902 4.697756 CCGGTTCGCCTGGCTCAA 62.698 66.667 17.92 6.47 34.30 3.02
3937 7907 3.934391 GACTCACCGGTTCGCCTGG 62.934 68.421 2.97 0.00 37.11 4.45
3938 7908 2.432628 GACTCACCGGTTCGCCTG 60.433 66.667 2.97 0.00 34.30 4.85
3939 7909 4.052229 CGACTCACCGGTTCGCCT 62.052 66.667 13.74 0.00 34.30 5.52
3940 7910 3.853597 AACGACTCACCGGTTCGCC 62.854 63.158 23.47 5.54 0.00 5.54
3941 7911 2.355481 AACGACTCACCGGTTCGC 60.355 61.111 23.47 5.39 0.00 4.70
3942 7912 1.002250 CTCAACGACTCACCGGTTCG 61.002 60.000 22.28 22.28 0.00 3.95
3943 7913 0.313043 TCTCAACGACTCACCGGTTC 59.687 55.000 2.97 0.00 0.00 3.62
3944 7914 0.966920 ATCTCAACGACTCACCGGTT 59.033 50.000 2.97 0.00 0.00 4.44
3945 7915 1.743958 CTATCTCAACGACTCACCGGT 59.256 52.381 0.00 0.00 0.00 5.28
3946 7916 1.065701 CCTATCTCAACGACTCACCGG 59.934 57.143 0.00 0.00 0.00 5.28
3947 7917 1.743958 ACCTATCTCAACGACTCACCG 59.256 52.381 0.00 0.00 0.00 4.94
3948 7918 3.870633 AACCTATCTCAACGACTCACC 57.129 47.619 0.00 0.00 0.00 4.02
3949 7919 4.792189 CGTTAACCTATCTCAACGACTCAC 59.208 45.833 0.00 0.00 44.85 3.51
3950 7920 4.673580 GCGTTAACCTATCTCAACGACTCA 60.674 45.833 9.62 0.00 44.85 3.41
3951 7921 3.790288 GCGTTAACCTATCTCAACGACTC 59.210 47.826 9.62 0.00 44.85 3.36
3952 7922 3.428589 GGCGTTAACCTATCTCAACGACT 60.429 47.826 9.62 0.00 46.32 4.18
3953 7923 2.856557 GGCGTTAACCTATCTCAACGAC 59.143 50.000 9.62 2.86 44.85 4.34
3954 7924 2.478370 CGGCGTTAACCTATCTCAACGA 60.478 50.000 9.62 0.00 44.85 3.85
3955 7925 1.850441 CGGCGTTAACCTATCTCAACG 59.150 52.381 0.00 1.61 44.85 4.10
3956 7926 1.591619 GCGGCGTTAACCTATCTCAAC 59.408 52.381 9.37 0.00 0.00 3.18
3957 7927 1.205179 TGCGGCGTTAACCTATCTCAA 59.795 47.619 9.37 0.00 0.00 3.02
3958 7928 0.818938 TGCGGCGTTAACCTATCTCA 59.181 50.000 9.37 0.00 0.00 3.27
3959 7929 1.488527 CTGCGGCGTTAACCTATCTC 58.511 55.000 9.37 0.00 0.00 2.75
3960 7930 0.529992 GCTGCGGCGTTAACCTATCT 60.530 55.000 9.37 0.00 0.00 1.98
3961 7931 0.529992 AGCTGCGGCGTTAACCTATC 60.530 55.000 12.87 0.00 44.37 2.08
3962 7932 0.748450 TAGCTGCGGCGTTAACCTAT 59.252 50.000 12.87 0.00 44.37 2.57
3963 7933 0.748450 ATAGCTGCGGCGTTAACCTA 59.252 50.000 12.87 0.00 44.37 3.08
3964 7934 0.810031 CATAGCTGCGGCGTTAACCT 60.810 55.000 12.87 0.00 44.37 3.50
3965 7935 1.641677 CATAGCTGCGGCGTTAACC 59.358 57.895 12.87 0.00 44.37 2.85
3966 7936 1.011131 GCATAGCTGCGGCGTTAAC 60.011 57.895 12.87 0.00 44.37 2.01
3967 7937 3.405464 GCATAGCTGCGGCGTTAA 58.595 55.556 12.87 0.00 44.37 2.01
3976 7946 2.030091 CGAACTCACACATGCATAGCTG 59.970 50.000 0.00 0.00 0.00 4.24
3977 7947 2.274437 CGAACTCACACATGCATAGCT 58.726 47.619 0.00 0.00 0.00 3.32
3978 7948 2.002586 ACGAACTCACACATGCATAGC 58.997 47.619 0.00 0.00 0.00 2.97
3979 7949 3.181517 CCAACGAACTCACACATGCATAG 60.182 47.826 0.00 0.00 0.00 2.23
3980 7950 2.741517 CCAACGAACTCACACATGCATA 59.258 45.455 0.00 0.00 0.00 3.14
3981 7951 1.536766 CCAACGAACTCACACATGCAT 59.463 47.619 0.00 0.00 0.00 3.96
3982 7952 0.943673 CCAACGAACTCACACATGCA 59.056 50.000 0.00 0.00 0.00 3.96
3983 7953 0.385974 GCCAACGAACTCACACATGC 60.386 55.000 0.00 0.00 0.00 4.06
3984 7954 0.943673 TGCCAACGAACTCACACATG 59.056 50.000 0.00 0.00 0.00 3.21
3985 7955 1.536766 CATGCCAACGAACTCACACAT 59.463 47.619 0.00 0.00 0.00 3.21
3986 7956 0.943673 CATGCCAACGAACTCACACA 59.056 50.000 0.00 0.00 0.00 3.72
3987 7957 0.238289 CCATGCCAACGAACTCACAC 59.762 55.000 0.00 0.00 0.00 3.82
3988 7958 0.107643 TCCATGCCAACGAACTCACA 59.892 50.000 0.00 0.00 0.00 3.58
3989 7959 0.517316 GTCCATGCCAACGAACTCAC 59.483 55.000 0.00 0.00 0.00 3.51
3990 7960 0.948623 CGTCCATGCCAACGAACTCA 60.949 55.000 7.49 0.00 41.29 3.41
3991 7961 0.949105 ACGTCCATGCCAACGAACTC 60.949 55.000 16.96 0.00 41.29 3.01
3992 7962 1.070786 ACGTCCATGCCAACGAACT 59.929 52.632 16.96 0.00 41.29 3.01
3993 7963 1.206578 CACGTCCATGCCAACGAAC 59.793 57.895 16.96 0.00 41.29 3.95
3994 7964 2.612567 GCACGTCCATGCCAACGAA 61.613 57.895 16.96 0.00 41.29 3.85
3995 7965 3.047280 GCACGTCCATGCCAACGA 61.047 61.111 16.96 0.00 41.29 3.85
4001 7971 1.154413 CGACAAAGCACGTCCATGC 60.154 57.895 0.00 0.00 46.50 4.06
4002 7972 1.078709 ATCGACAAAGCACGTCCATG 58.921 50.000 0.00 0.00 0.00 3.66
4003 7973 1.078709 CATCGACAAAGCACGTCCAT 58.921 50.000 0.00 0.00 0.00 3.41
4004 7974 1.565156 GCATCGACAAAGCACGTCCA 61.565 55.000 0.00 0.00 0.00 4.02
4005 7975 1.132640 GCATCGACAAAGCACGTCC 59.867 57.895 0.00 0.00 0.00 4.79
4006 7976 1.859398 TGCATCGACAAAGCACGTC 59.141 52.632 0.00 0.00 32.55 4.34
4007 7977 4.041617 TGCATCGACAAAGCACGT 57.958 50.000 0.00 0.00 32.55 4.49
4010 7980 0.878086 TGACGTGCATCGACAAAGCA 60.878 50.000 14.18 0.00 40.58 3.91
4011 7981 0.443869 ATGACGTGCATCGACAAAGC 59.556 50.000 14.18 0.00 45.36 3.51
4012 7982 2.880822 AATGACGTGCATCGACAAAG 57.119 45.000 14.18 0.00 45.36 2.77
4013 7983 2.093625 GCTAATGACGTGCATCGACAAA 59.906 45.455 14.18 7.26 45.36 2.83
4014 7984 1.658596 GCTAATGACGTGCATCGACAA 59.341 47.619 14.18 1.95 45.36 3.18
4015 7985 1.277326 GCTAATGACGTGCATCGACA 58.723 50.000 14.18 13.84 46.09 4.35
4016 7986 0.577269 GGCTAATGACGTGCATCGAC 59.423 55.000 14.18 9.27 42.86 4.20
4017 7987 0.869880 CGGCTAATGACGTGCATCGA 60.870 55.000 14.18 0.00 40.41 3.59
4018 7988 1.559814 CGGCTAATGACGTGCATCG 59.440 57.895 0.00 7.07 40.41 3.84
4019 7989 0.810031 ACCGGCTAATGACGTGCATC 60.810 55.000 0.00 0.00 44.61 3.91
4020 7990 1.089481 CACCGGCTAATGACGTGCAT 61.089 55.000 0.00 0.00 44.61 3.96
4021 7991 1.739929 CACCGGCTAATGACGTGCA 60.740 57.895 0.00 0.00 44.61 4.57
4022 7992 2.461110 CCACCGGCTAATGACGTGC 61.461 63.158 0.00 0.00 44.61 5.34
4023 7993 0.806102 CTCCACCGGCTAATGACGTG 60.806 60.000 0.00 0.00 44.61 4.49
4024 7994 1.515954 CTCCACCGGCTAATGACGT 59.484 57.895 0.00 0.00 44.61 4.34
4025 7995 1.227263 CCTCCACCGGCTAATGACG 60.227 63.158 0.00 0.00 45.91 4.35
4026 7996 0.252197 AACCTCCACCGGCTAATGAC 59.748 55.000 0.00 0.00 0.00 3.06
4027 7997 0.251916 CAACCTCCACCGGCTAATGA 59.748 55.000 0.00 0.00 0.00 2.57
4028 7998 1.376609 GCAACCTCCACCGGCTAATG 61.377 60.000 0.00 0.00 0.00 1.90
4029 7999 1.077716 GCAACCTCCACCGGCTAAT 60.078 57.895 0.00 0.00 0.00 1.73
4030 8000 1.847798 ATGCAACCTCCACCGGCTAA 61.848 55.000 0.00 0.00 0.00 3.09
4031 8001 2.297895 ATGCAACCTCCACCGGCTA 61.298 57.895 0.00 0.00 0.00 3.93
4032 8002 3.650950 ATGCAACCTCCACCGGCT 61.651 61.111 0.00 0.00 0.00 5.52
4033 8003 2.813226 TACATGCAACCTCCACCGGC 62.813 60.000 0.00 0.00 0.00 6.13
4034 8004 0.744414 CTACATGCAACCTCCACCGG 60.744 60.000 0.00 0.00 0.00 5.28
4035 8005 0.249120 TCTACATGCAACCTCCACCG 59.751 55.000 0.00 0.00 0.00 4.94
4036 8006 2.027192 TCTTCTACATGCAACCTCCACC 60.027 50.000 0.00 0.00 0.00 4.61
4037 8007 3.334583 TCTTCTACATGCAACCTCCAC 57.665 47.619 0.00 0.00 0.00 4.02
4038 8008 4.574674 ATTCTTCTACATGCAACCTCCA 57.425 40.909 0.00 0.00 0.00 3.86
4039 8009 6.037610 CACTAATTCTTCTACATGCAACCTCC 59.962 42.308 0.00 0.00 0.00 4.30
4040 8010 6.037610 CCACTAATTCTTCTACATGCAACCTC 59.962 42.308 0.00 0.00 0.00 3.85
4041 8011 5.882557 CCACTAATTCTTCTACATGCAACCT 59.117 40.000 0.00 0.00 0.00 3.50
4042 8012 5.880332 TCCACTAATTCTTCTACATGCAACC 59.120 40.000 0.00 0.00 0.00 3.77
4043 8013 6.595716 ACTCCACTAATTCTTCTACATGCAAC 59.404 38.462 0.00 0.00 0.00 4.17
4044 8014 6.711277 ACTCCACTAATTCTTCTACATGCAA 58.289 36.000 0.00 0.00 0.00 4.08
4045 8015 6.299805 ACTCCACTAATTCTTCTACATGCA 57.700 37.500 0.00 0.00 0.00 3.96
4046 8016 7.493367 ACTACTCCACTAATTCTTCTACATGC 58.507 38.462 0.00 0.00 0.00 4.06
4047 8017 9.307121 CAACTACTCCACTAATTCTTCTACATG 57.693 37.037 0.00 0.00 0.00 3.21
4048 8018 7.982354 GCAACTACTCCACTAATTCTTCTACAT 59.018 37.037 0.00 0.00 0.00 2.29
4049 8019 7.039293 TGCAACTACTCCACTAATTCTTCTACA 60.039 37.037 0.00 0.00 0.00 2.74
4050 8020 7.275999 GTGCAACTACTCCACTAATTCTTCTAC 59.724 40.741 0.00 0.00 0.00 2.59
4051 8021 7.039293 TGTGCAACTACTCCACTAATTCTTCTA 60.039 37.037 0.00 0.00 38.04 2.10
4052 8022 6.166982 GTGCAACTACTCCACTAATTCTTCT 58.833 40.000 0.00 0.00 0.00 2.85
4053 8023 5.932303 TGTGCAACTACTCCACTAATTCTTC 59.068 40.000 0.00 0.00 38.04 2.87
4054 8024 5.865085 TGTGCAACTACTCCACTAATTCTT 58.135 37.500 0.00 0.00 38.04 2.52
4055 8025 5.483685 TGTGCAACTACTCCACTAATTCT 57.516 39.130 0.00 0.00 38.04 2.40
4056 8026 5.874810 TCATGTGCAACTACTCCACTAATTC 59.125 40.000 0.00 0.00 38.04 2.17
4057 8027 5.643777 GTCATGTGCAACTACTCCACTAATT 59.356 40.000 0.00 0.00 38.04 1.40
4058 8028 5.178797 GTCATGTGCAACTACTCCACTAAT 58.821 41.667 0.00 0.00 38.04 1.73
4059 8029 4.566004 GTCATGTGCAACTACTCCACTAA 58.434 43.478 0.00 0.00 38.04 2.24
4060 8030 3.366985 CGTCATGTGCAACTACTCCACTA 60.367 47.826 0.00 0.00 38.04 2.74
4061 8031 2.610479 CGTCATGTGCAACTACTCCACT 60.610 50.000 0.00 0.00 38.04 4.00
4062 8032 1.726791 CGTCATGTGCAACTACTCCAC 59.273 52.381 0.00 0.00 38.04 4.02
4063 8033 1.337728 CCGTCATGTGCAACTACTCCA 60.338 52.381 0.00 0.00 38.04 3.86
4064 8034 1.359848 CCGTCATGTGCAACTACTCC 58.640 55.000 0.00 0.00 38.04 3.85
4065 8035 1.337823 ACCCGTCATGTGCAACTACTC 60.338 52.381 0.00 0.00 38.04 2.59
4066 8036 0.685097 ACCCGTCATGTGCAACTACT 59.315 50.000 0.00 0.00 38.04 2.57
4067 8037 0.796312 CACCCGTCATGTGCAACTAC 59.204 55.000 0.00 0.00 38.04 2.73
4068 8038 3.225272 CACCCGTCATGTGCAACTA 57.775 52.632 0.00 0.00 38.04 2.24
4069 8039 4.063529 CACCCGTCATGTGCAACT 57.936 55.556 0.00 0.00 38.04 3.16
4074 8044 0.249120 TTCTAGGCACCCGTCATGTG 59.751 55.000 0.00 0.00 36.79 3.21
4075 8045 0.981183 TTTCTAGGCACCCGTCATGT 59.019 50.000 0.00 0.00 0.00 3.21
4076 8046 1.066143 ACTTTCTAGGCACCCGTCATG 60.066 52.381 0.00 0.00 0.00 3.07
4077 8047 1.066143 CACTTTCTAGGCACCCGTCAT 60.066 52.381 0.00 0.00 0.00 3.06
4078 8048 0.320374 CACTTTCTAGGCACCCGTCA 59.680 55.000 0.00 0.00 0.00 4.35
4079 8049 0.391263 CCACTTTCTAGGCACCCGTC 60.391 60.000 0.00 0.00 0.00 4.79
4080 8050 0.834687 TCCACTTTCTAGGCACCCGT 60.835 55.000 0.00 0.00 0.00 5.28
4081 8051 0.541863 ATCCACTTTCTAGGCACCCG 59.458 55.000 0.00 0.00 0.00 5.28
4082 8052 1.559682 TGATCCACTTTCTAGGCACCC 59.440 52.381 0.00 0.00 0.00 4.61
4083 8053 3.209410 CATGATCCACTTTCTAGGCACC 58.791 50.000 0.00 0.00 0.00 5.01
4084 8054 2.615912 GCATGATCCACTTTCTAGGCAC 59.384 50.000 0.00 0.00 0.00 5.01
4085 8055 2.421952 GGCATGATCCACTTTCTAGGCA 60.422 50.000 0.00 0.00 0.00 4.75
4086 8056 2.225467 GGCATGATCCACTTTCTAGGC 58.775 52.381 0.00 0.00 0.00 3.93
4087 8057 2.158900 ACGGCATGATCCACTTTCTAGG 60.159 50.000 0.00 0.00 0.00 3.02
4088 8058 3.185246 ACGGCATGATCCACTTTCTAG 57.815 47.619 0.00 0.00 0.00 2.43
4089 8059 3.270027 CAACGGCATGATCCACTTTCTA 58.730 45.455 0.00 0.00 0.00 2.10
4090 8060 2.086869 CAACGGCATGATCCACTTTCT 58.913 47.619 0.00 0.00 0.00 2.52
4091 8061 1.133025 CCAACGGCATGATCCACTTTC 59.867 52.381 0.00 0.00 0.00 2.62
4092 8062 1.176527 CCAACGGCATGATCCACTTT 58.823 50.000 0.00 0.00 0.00 2.66
4093 8063 2.872408 CCAACGGCATGATCCACTT 58.128 52.632 0.00 0.00 0.00 3.16
4094 8064 4.643795 CCAACGGCATGATCCACT 57.356 55.556 0.00 0.00 0.00 4.00
4111 8081 1.870055 TAACTCACACGGTCGGAGGC 61.870 60.000 9.58 0.00 32.98 4.70
4112 8082 0.815734 ATAACTCACACGGTCGGAGG 59.184 55.000 9.58 0.00 32.98 4.30
4113 8083 2.941064 TCTATAACTCACACGGTCGGAG 59.059 50.000 4.50 4.50 34.85 4.63
4114 8084 2.941064 CTCTATAACTCACACGGTCGGA 59.059 50.000 0.00 0.00 0.00 4.55
4115 8085 2.681848 ACTCTATAACTCACACGGTCGG 59.318 50.000 0.00 0.00 0.00 4.79
4116 8086 3.373130 TCACTCTATAACTCACACGGTCG 59.627 47.826 0.00 0.00 0.00 4.79
4117 8087 4.731193 GCTCACTCTATAACTCACACGGTC 60.731 50.000 0.00 0.00 0.00 4.79
4118 8088 3.128938 GCTCACTCTATAACTCACACGGT 59.871 47.826 0.00 0.00 0.00 4.83
4119 8089 3.378742 AGCTCACTCTATAACTCACACGG 59.621 47.826 0.00 0.00 0.00 4.94
4120 8090 4.624336 AGCTCACTCTATAACTCACACG 57.376 45.455 0.00 0.00 0.00 4.49
4121 8091 6.319152 TCCTTAGCTCACTCTATAACTCACAC 59.681 42.308 0.00 0.00 0.00 3.82
4122 8092 6.424032 TCCTTAGCTCACTCTATAACTCACA 58.576 40.000 0.00 0.00 0.00 3.58
4123 8093 6.945938 TCCTTAGCTCACTCTATAACTCAC 57.054 41.667 0.00 0.00 0.00 3.51
4124 8094 9.290988 CTAATCCTTAGCTCACTCTATAACTCA 57.709 37.037 0.00 0.00 0.00 3.41
4125 8095 9.292195 ACTAATCCTTAGCTCACTCTATAACTC 57.708 37.037 0.00 0.00 36.71 3.01
4126 8096 9.649316 AACTAATCCTTAGCTCACTCTATAACT 57.351 33.333 0.00 0.00 36.71 2.24
4127 8097 9.685828 CAACTAATCCTTAGCTCACTCTATAAC 57.314 37.037 0.00 0.00 36.71 1.89
4128 8098 8.861086 CCAACTAATCCTTAGCTCACTCTATAA 58.139 37.037 0.00 0.00 36.71 0.98
4129 8099 8.005388 ACCAACTAATCCTTAGCTCACTCTATA 58.995 37.037 0.00 0.00 36.71 1.31
4130 8100 6.841755 ACCAACTAATCCTTAGCTCACTCTAT 59.158 38.462 0.00 0.00 36.71 1.98
4131 8101 6.195700 ACCAACTAATCCTTAGCTCACTCTA 58.804 40.000 0.00 0.00 36.71 2.43
4132 8102 5.026790 ACCAACTAATCCTTAGCTCACTCT 58.973 41.667 0.00 0.00 36.71 3.24
4133 8103 5.346181 ACCAACTAATCCTTAGCTCACTC 57.654 43.478 0.00 0.00 36.71 3.51
4134 8104 5.958987 AGTACCAACTAATCCTTAGCTCACT 59.041 40.000 0.00 0.00 36.71 3.41
4135 8105 6.043411 CAGTACCAACTAATCCTTAGCTCAC 58.957 44.000 0.00 0.00 36.71 3.51
4136 8106 5.720041 ACAGTACCAACTAATCCTTAGCTCA 59.280 40.000 0.00 0.00 36.71 4.26
4137 8107 6.043411 CACAGTACCAACTAATCCTTAGCTC 58.957 44.000 0.00 0.00 36.71 4.09
4138 8108 5.720041 TCACAGTACCAACTAATCCTTAGCT 59.280 40.000 0.00 0.00 36.71 3.32
4139 8109 5.974108 TCACAGTACCAACTAATCCTTAGC 58.026 41.667 0.00 0.00 36.71 3.09
4140 8110 6.530534 CGTTCACAGTACCAACTAATCCTTAG 59.469 42.308 0.00 0.00 39.18 2.18
4141 8111 6.015180 ACGTTCACAGTACCAACTAATCCTTA 60.015 38.462 0.00 0.00 33.48 2.69
4142 8112 5.221581 ACGTTCACAGTACCAACTAATCCTT 60.222 40.000 0.00 0.00 33.48 3.36
4143 8113 4.282703 ACGTTCACAGTACCAACTAATCCT 59.717 41.667 0.00 0.00 33.48 3.24
4144 8114 4.387862 CACGTTCACAGTACCAACTAATCC 59.612 45.833 0.00 0.00 33.48 3.01
4145 8115 4.986659 ACACGTTCACAGTACCAACTAATC 59.013 41.667 0.00 0.00 33.48 1.75
4146 8116 4.748102 CACACGTTCACAGTACCAACTAAT 59.252 41.667 0.00 0.00 33.48 1.73
4147 8117 4.114073 CACACGTTCACAGTACCAACTAA 58.886 43.478 0.00 0.00 33.48 2.24
4148 8118 3.130869 ACACACGTTCACAGTACCAACTA 59.869 43.478 0.00 0.00 33.48 2.24
4149 8119 2.093869 ACACACGTTCACAGTACCAACT 60.094 45.455 0.00 0.00 35.91 3.16
4150 8120 2.029970 CACACACGTTCACAGTACCAAC 59.970 50.000 0.00 0.00 0.00 3.77
4151 8121 2.094130 TCACACACGTTCACAGTACCAA 60.094 45.455 0.00 0.00 0.00 3.67
4152 8122 1.477295 TCACACACGTTCACAGTACCA 59.523 47.619 0.00 0.00 0.00 3.25
4153 8123 2.124903 CTCACACACGTTCACAGTACC 58.875 52.381 0.00 0.00 0.00 3.34
4154 8124 1.521423 GCTCACACACGTTCACAGTAC 59.479 52.381 0.00 0.00 0.00 2.73
4155 8125 1.537348 GGCTCACACACGTTCACAGTA 60.537 52.381 0.00 0.00 0.00 2.74
4156 8126 0.810031 GGCTCACACACGTTCACAGT 60.810 55.000 0.00 0.00 0.00 3.55
4157 8127 0.530650 AGGCTCACACACGTTCACAG 60.531 55.000 0.00 0.00 0.00 3.66
4158 8128 0.809636 CAGGCTCACACACGTTCACA 60.810 55.000 0.00 0.00 0.00 3.58
4159 8129 0.810031 ACAGGCTCACACACGTTCAC 60.810 55.000 0.00 0.00 0.00 3.18
4160 8130 0.107897 AACAGGCTCACACACGTTCA 60.108 50.000 0.00 0.00 0.00 3.18
4161 8131 0.304705 CAACAGGCTCACACACGTTC 59.695 55.000 0.00 0.00 0.00 3.95
4162 8132 0.392461 ACAACAGGCTCACACACGTT 60.392 50.000 0.00 0.00 0.00 3.99
4163 8133 0.462375 TACAACAGGCTCACACACGT 59.538 50.000 0.00 0.00 0.00 4.49
4164 8134 0.859232 GTACAACAGGCTCACACACG 59.141 55.000 0.00 0.00 0.00 4.49
4165 8135 2.240493 AGTACAACAGGCTCACACAC 57.760 50.000 0.00 0.00 0.00 3.82
4166 8136 2.963101 ACTAGTACAACAGGCTCACACA 59.037 45.455 0.00 0.00 0.00 3.72
4167 8137 3.662247 ACTAGTACAACAGGCTCACAC 57.338 47.619 0.00 0.00 0.00 3.82
4168 8138 3.508793 GGTACTAGTACAACAGGCTCACA 59.491 47.826 29.38 0.00 37.78 3.58
4169 8139 3.762823 AGGTACTAGTACAACAGGCTCAC 59.237 47.826 29.38 11.67 36.02 3.51
4170 8140 4.043608 AGGTACTAGTACAACAGGCTCA 57.956 45.455 29.38 0.00 36.02 4.26
4198 8168 8.139989 CCTCTTTCTCATTCATTTGTTCAGTTT 58.860 33.333 0.00 0.00 0.00 2.66
4199 8169 7.655490 CCTCTTTCTCATTCATTTGTTCAGTT 58.345 34.615 0.00 0.00 0.00 3.16
4200 8170 6.294397 GCCTCTTTCTCATTCATTTGTTCAGT 60.294 38.462 0.00 0.00 0.00 3.41
4201 8171 6.091437 GCCTCTTTCTCATTCATTTGTTCAG 58.909 40.000 0.00 0.00 0.00 3.02
4202 8172 5.047802 GGCCTCTTTCTCATTCATTTGTTCA 60.048 40.000 0.00 0.00 0.00 3.18
4203 8173 5.405797 GGCCTCTTTCTCATTCATTTGTTC 58.594 41.667 0.00 0.00 0.00 3.18
4204 8174 4.082571 CGGCCTCTTTCTCATTCATTTGTT 60.083 41.667 0.00 0.00 0.00 2.83
4205 8175 3.441572 CGGCCTCTTTCTCATTCATTTGT 59.558 43.478 0.00 0.00 0.00 2.83
4206 8176 3.441572 ACGGCCTCTTTCTCATTCATTTG 59.558 43.478 0.00 0.00 0.00 2.32
4207 8177 3.441572 CACGGCCTCTTTCTCATTCATTT 59.558 43.478 0.00 0.00 0.00 2.32
4208 8178 3.012518 CACGGCCTCTTTCTCATTCATT 58.987 45.455 0.00 0.00 0.00 2.57
4209 8179 2.237143 TCACGGCCTCTTTCTCATTCAT 59.763 45.455 0.00 0.00 0.00 2.57
4210 8180 1.623311 TCACGGCCTCTTTCTCATTCA 59.377 47.619 0.00 0.00 0.00 2.57
4211 8181 2.275318 CTCACGGCCTCTTTCTCATTC 58.725 52.381 0.00 0.00 0.00 2.67
4212 8182 1.065854 CCTCACGGCCTCTTTCTCATT 60.066 52.381 0.00 0.00 0.00 2.57
4213 8183 0.539051 CCTCACGGCCTCTTTCTCAT 59.461 55.000 0.00 0.00 0.00 2.90
4214 8184 1.544825 CCCTCACGGCCTCTTTCTCA 61.545 60.000 0.00 0.00 0.00 3.27
4215 8185 1.219393 CCCTCACGGCCTCTTTCTC 59.781 63.158 0.00 0.00 0.00 2.87
4216 8186 3.393360 CCCTCACGGCCTCTTTCT 58.607 61.111 0.00 0.00 0.00 2.52
4225 8195 1.376037 GTTTCTCCAGCCCTCACGG 60.376 63.158 0.00 0.00 0.00 4.94
4226 8196 1.376037 GGTTTCTCCAGCCCTCACG 60.376 63.158 0.00 0.00 35.97 4.35
4227 8197 1.761174 TGGTTTCTCCAGCCCTCAC 59.239 57.895 0.00 0.00 41.93 3.51
4228 8198 4.330056 TGGTTTCTCCAGCCCTCA 57.670 55.556 0.00 0.00 41.93 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.