Multiple sequence alignment - TraesCS3D01G013700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G013700 chr3D 100.000 1711 0 0 1 1711 4958663 4956953 0.000000e+00 3160
1 TraesCS3D01G013700 chr3D 94.424 1668 90 3 1 1666 9634054 9635720 0.000000e+00 2562
2 TraesCS3D01G013700 chr3D 100.000 630 0 0 2037 2666 4956627 4955998 0.000000e+00 1164
3 TraesCS3D01G013700 chr3D 90.769 130 10 2 2040 2169 9635779 9635906 3.530000e-39 172
4 TraesCS3D01G013700 chrUn 93.805 1711 103 2 1 1711 35295842 35297549 0.000000e+00 2569
5 TraesCS3D01G013700 chrUn 93.805 1711 103 2 1 1711 229345682 229347389 0.000000e+00 2569
6 TraesCS3D01G013700 chrUn 95.858 1497 60 2 1 1496 284402079 284400584 0.000000e+00 2420
7 TraesCS3D01G013700 chrUn 95.858 1497 60 2 1 1496 284408613 284407118 0.000000e+00 2420
8 TraesCS3D01G013700 chrUn 95.858 1497 60 2 1 1496 302992238 302990743 0.000000e+00 2420
9 TraesCS3D01G013700 chrUn 90.909 143 11 2 2042 2183 35297572 35297713 9.740000e-45 191
10 TraesCS3D01G013700 chrUn 90.909 143 11 2 2042 2183 229347412 229347553 9.740000e-45 191
11 TraesCS3D01G013700 chrUn 88.276 145 15 2 2042 2186 285723388 285723530 3.530000e-39 172
12 TraesCS3D01G013700 chrUn 86.207 145 14 3 2042 2186 408894083 408893945 4.600000e-33 152
13 TraesCS3D01G013700 chr3A 93.396 1711 106 3 1 1711 10883874 10882171 0.000000e+00 2527
14 TraesCS3D01G013700 chr3A 94.100 1661 95 3 1 1660 10687998 10686340 0.000000e+00 2521
15 TraesCS3D01G013700 chr3A 88.966 145 15 1 2042 2186 10686279 10686136 7.580000e-41 178
16 TraesCS3D01G013700 chr3B 93.329 1664 109 2 4 1666 13815813 13817475 0.000000e+00 2457
17 TraesCS3D01G013700 chr3B 88.194 144 16 1 2037 2180 13817531 13817673 1.270000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G013700 chr3D 4955998 4958663 2665 True 2162.0 3160 100.0000 1 2666 2 chr3D.!!$R1 2665
1 TraesCS3D01G013700 chr3D 9634054 9635906 1852 False 1367.0 2562 92.5965 1 2169 2 chr3D.!!$F1 2168
2 TraesCS3D01G013700 chrUn 284400584 284402079 1495 True 2420.0 2420 95.8580 1 1496 1 chrUn.!!$R1 1495
3 TraesCS3D01G013700 chrUn 284407118 284408613 1495 True 2420.0 2420 95.8580 1 1496 1 chrUn.!!$R2 1495
4 TraesCS3D01G013700 chrUn 302990743 302992238 1495 True 2420.0 2420 95.8580 1 1496 1 chrUn.!!$R3 1495
5 TraesCS3D01G013700 chrUn 35295842 35297713 1871 False 1380.0 2569 92.3570 1 2183 2 chrUn.!!$F2 2182
6 TraesCS3D01G013700 chrUn 229345682 229347553 1871 False 1380.0 2569 92.3570 1 2183 2 chrUn.!!$F3 2182
7 TraesCS3D01G013700 chr3A 10882171 10883874 1703 True 2527.0 2527 93.3960 1 1711 1 chr3A.!!$R1 1710
8 TraesCS3D01G013700 chr3A 10686136 10687998 1862 True 1349.5 2521 91.5330 1 2186 2 chr3A.!!$R2 2185
9 TraesCS3D01G013700 chr3B 13815813 13817673 1860 False 1314.0 2457 90.7615 4 2180 2 chr3B.!!$F1 2176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 438 1.556451 GCAATCCTTGGCAGGGAATTT 59.444 47.619 23.08 10.54 41.25 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 2204 0.036388 ATATGGCGGTGCTTATCCCG 60.036 55.0 0.0 0.0 46.9 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.628074 ACCAGTTATCGTCAATTATCCCG 58.372 43.478 0.00 0.00 0.00 5.14
46 47 6.211587 TCCCGTCGAGTTTATTTCATCTTA 57.788 37.500 0.00 0.00 0.00 2.10
48 49 7.270047 TCCCGTCGAGTTTATTTCATCTTAAT 58.730 34.615 0.00 0.00 0.00 1.40
69 70 9.979578 CTTAATAGTCTCATTCTGCTAGATGTT 57.020 33.333 0.00 0.00 0.00 2.71
81 82 7.807977 TCTGCTAGATGTTTCTCAAAACTTT 57.192 32.000 0.00 0.00 44.23 2.66
99 100 3.957497 ACTTTTTGACTGGCACATTACCA 59.043 39.130 0.00 0.00 38.20 3.25
348 349 2.564062 CAATTTCACCATCTTGGCCAGT 59.436 45.455 5.11 0.00 42.67 4.00
427 428 9.342308 TCTTAAATATTAGTCAGCAATCCTTGG 57.658 33.333 0.00 0.00 0.00 3.61
429 430 2.877097 TTAGTCAGCAATCCTTGGCA 57.123 45.000 0.00 0.00 0.00 4.92
437 438 1.556451 GCAATCCTTGGCAGGGAATTT 59.444 47.619 23.08 10.54 41.25 1.82
526 528 2.756760 GGCCTCATGCTGAAGATTTTGA 59.243 45.455 0.00 0.00 40.92 2.69
603 605 6.587990 CAGTCAGAAAGAAGATTAAGAAGCGA 59.412 38.462 0.00 0.00 0.00 4.93
985 987 3.496331 ACAACCGAATTGGGATTCAGTT 58.504 40.909 14.12 0.00 41.35 3.16
1194 1196 1.880819 GCATGCCTGGAACTGTTGGG 61.881 60.000 6.36 0.00 0.00 4.12
1250 1253 7.272948 GCAATTTTCTTGCTCAATCTACTTCTG 59.727 37.037 2.81 0.00 41.87 3.02
1433 1436 2.674380 CCTGAGGCAGTGGGTTGC 60.674 66.667 0.00 0.00 43.34 4.17
1459 1462 1.594331 GTTTCCGGCAGAACTTGTCT 58.406 50.000 0.00 0.00 36.88 3.41
1498 1501 4.081031 AGCTACTACAAGGGTCTTTTAGCC 60.081 45.833 0.00 0.00 46.88 3.93
1564 1567 1.950216 CATGCACTAGCGACTCTCCTA 59.050 52.381 0.00 0.00 46.23 2.94
1611 1614 4.997395 GTGGTTGTGAAGCTGAAGAAGATA 59.003 41.667 0.00 0.00 0.00 1.98
1624 1627 4.081087 TGAAGAAGATACAAGTGGCCTACC 60.081 45.833 3.32 0.00 0.00 3.18
1646 1649 0.461870 AAATCGATAGCAGCCGCACA 60.462 50.000 0.00 0.00 42.27 4.57
1666 1669 4.398358 CACAGAATGAAGCCAGTCATTGAT 59.602 41.667 11.44 0.20 45.98 2.57
1667 1670 4.639310 ACAGAATGAAGCCAGTCATTGATC 59.361 41.667 11.44 0.00 45.98 2.92
1668 1671 4.638865 CAGAATGAAGCCAGTCATTGATCA 59.361 41.667 11.44 0.00 45.98 2.92
1669 1672 4.639310 AGAATGAAGCCAGTCATTGATCAC 59.361 41.667 11.44 0.00 45.98 3.06
1670 1673 3.708403 TGAAGCCAGTCATTGATCACT 57.292 42.857 0.00 0.00 0.00 3.41
1671 1674 3.340928 TGAAGCCAGTCATTGATCACTG 58.659 45.455 6.72 6.72 39.90 3.66
1672 1675 3.008266 TGAAGCCAGTCATTGATCACTGA 59.992 43.478 11.43 11.43 42.37 3.41
1684 1691 4.957759 TGATCACTGATCAACATTGCTG 57.042 40.909 17.80 0.00 44.70 4.41
1690 1697 2.490509 CTGATCAACATTGCTGGCTTCA 59.509 45.455 0.00 0.00 0.00 3.02
1691 1698 2.229543 TGATCAACATTGCTGGCTTCAC 59.770 45.455 0.00 0.00 0.00 3.18
2073 2080 2.355756 TCAAAAAGCTATGATGCGGCTC 59.644 45.455 0.00 0.00 38.13 4.70
2107 2114 6.615726 TGCCATAGGAATAGACTAGAACCTTT 59.384 38.462 0.00 1.77 0.00 3.11
2127 2134 9.614792 AACCTTTTAGATCCTATCATTGTACAC 57.385 33.333 0.00 0.00 0.00 2.90
2128 2135 8.993424 ACCTTTTAGATCCTATCATTGTACACT 58.007 33.333 0.00 0.00 0.00 3.55
2153 2160 8.294954 TGTTTGGTTGAGATAAAACCTTAACA 57.705 30.769 15.87 15.87 46.11 2.41
2186 2193 9.778993 CATGTAATCTCTAATTTTCCTTGTGTG 57.221 33.333 0.00 0.00 0.00 3.82
2187 2194 8.918202 TGTAATCTCTAATTTTCCTTGTGTGT 57.082 30.769 0.00 0.00 0.00 3.72
2191 2198 9.520515 AATCTCTAATTTTCCTTGTGTGTATGT 57.479 29.630 0.00 0.00 0.00 2.29
2192 2199 8.918202 TCTCTAATTTTCCTTGTGTGTATGTT 57.082 30.769 0.00 0.00 0.00 2.71
2193 2200 8.783093 TCTCTAATTTTCCTTGTGTGTATGTTG 58.217 33.333 0.00 0.00 0.00 3.33
2194 2201 8.458573 TCTAATTTTCCTTGTGTGTATGTTGT 57.541 30.769 0.00 0.00 0.00 3.32
2195 2202 8.908903 TCTAATTTTCCTTGTGTGTATGTTGTT 58.091 29.630 0.00 0.00 0.00 2.83
2197 2204 8.865590 AATTTTCCTTGTGTGTATGTTGTTAC 57.134 30.769 0.00 0.00 0.00 2.50
2198 2205 5.660629 TTCCTTGTGTGTATGTTGTTACG 57.339 39.130 0.00 0.00 0.00 3.18
2199 2206 4.059511 TCCTTGTGTGTATGTTGTTACGG 58.940 43.478 0.00 0.00 0.00 4.02
2200 2207 3.187637 CCTTGTGTGTATGTTGTTACGGG 59.812 47.826 0.00 0.00 0.00 5.28
2201 2208 3.747854 TGTGTGTATGTTGTTACGGGA 57.252 42.857 0.00 0.00 0.00 5.14
2202 2209 4.274602 TGTGTGTATGTTGTTACGGGAT 57.725 40.909 0.00 0.00 0.00 3.85
2203 2210 5.402997 TGTGTGTATGTTGTTACGGGATA 57.597 39.130 0.00 0.00 0.00 2.59
2204 2211 5.791666 TGTGTGTATGTTGTTACGGGATAA 58.208 37.500 0.00 0.00 0.00 1.75
2205 2212 5.870433 TGTGTGTATGTTGTTACGGGATAAG 59.130 40.000 0.00 0.00 0.00 1.73
2206 2213 4.871557 TGTGTATGTTGTTACGGGATAAGC 59.128 41.667 0.00 0.00 0.00 3.09
2207 2214 4.871557 GTGTATGTTGTTACGGGATAAGCA 59.128 41.667 0.00 0.00 0.00 3.91
2208 2215 4.871557 TGTATGTTGTTACGGGATAAGCAC 59.128 41.667 0.00 0.00 0.00 4.40
2209 2216 2.702261 TGTTGTTACGGGATAAGCACC 58.298 47.619 0.00 0.00 0.00 5.01
2214 2221 2.111043 CGGGATAAGCACCGCCAT 59.889 61.111 0.00 0.00 43.96 4.40
2215 2222 1.369692 CGGGATAAGCACCGCCATA 59.630 57.895 0.00 0.00 43.96 2.74
2216 2223 0.036388 CGGGATAAGCACCGCCATAT 60.036 55.000 0.00 0.00 43.96 1.78
2217 2224 1.206132 CGGGATAAGCACCGCCATATA 59.794 52.381 0.00 0.00 43.96 0.86
2218 2225 2.354303 CGGGATAAGCACCGCCATATAA 60.354 50.000 0.00 0.00 43.96 0.98
2219 2226 3.681593 GGGATAAGCACCGCCATATAAA 58.318 45.455 0.00 0.00 0.00 1.40
2220 2227 4.270008 GGGATAAGCACCGCCATATAAAT 58.730 43.478 0.00 0.00 0.00 1.40
2221 2228 5.433526 GGGATAAGCACCGCCATATAAATA 58.566 41.667 0.00 0.00 0.00 1.40
2222 2229 5.296035 GGGATAAGCACCGCCATATAAATAC 59.704 44.000 0.00 0.00 0.00 1.89
2223 2230 5.878116 GGATAAGCACCGCCATATAAATACA 59.122 40.000 0.00 0.00 0.00 2.29
2224 2231 6.373216 GGATAAGCACCGCCATATAAATACAA 59.627 38.462 0.00 0.00 0.00 2.41
2225 2232 7.067008 GGATAAGCACCGCCATATAAATACAAT 59.933 37.037 0.00 0.00 0.00 2.71
2226 2233 5.627499 AGCACCGCCATATAAATACAATG 57.373 39.130 0.00 0.00 0.00 2.82
2227 2234 5.070001 AGCACCGCCATATAAATACAATGT 58.930 37.500 0.00 0.00 0.00 2.71
2228 2235 6.234920 AGCACCGCCATATAAATACAATGTA 58.765 36.000 0.00 0.00 0.00 2.29
2229 2236 6.148811 AGCACCGCCATATAAATACAATGTAC 59.851 38.462 0.00 0.00 0.00 2.90
2230 2237 6.530567 CACCGCCATATAAATACAATGTACG 58.469 40.000 0.00 0.00 0.00 3.67
2231 2238 5.121142 ACCGCCATATAAATACAATGTACGC 59.879 40.000 0.00 0.00 0.00 4.42
2232 2239 5.245105 CGCCATATAAATACAATGTACGCG 58.755 41.667 3.53 3.53 0.00 6.01
2233 2240 5.556470 GCCATATAAATACAATGTACGCGG 58.444 41.667 12.47 0.00 0.00 6.46
2234 2241 5.556470 CCATATAAATACAATGTACGCGGC 58.444 41.667 12.47 3.05 0.00 6.53
2235 2242 5.120986 CCATATAAATACAATGTACGCGGCA 59.879 40.000 12.47 9.88 0.00 5.69
2236 2243 6.183360 CCATATAAATACAATGTACGCGGCAT 60.183 38.462 12.47 12.02 0.00 4.40
2237 2244 3.602390 AAATACAATGTACGCGGCATC 57.398 42.857 12.47 0.00 0.00 3.91
2238 2245 1.508632 ATACAATGTACGCGGCATCC 58.491 50.000 12.47 0.00 0.00 3.51
2239 2246 0.462375 TACAATGTACGCGGCATCCT 59.538 50.000 12.47 5.89 0.00 3.24
2240 2247 1.089481 ACAATGTACGCGGCATCCTG 61.089 55.000 12.47 12.65 0.00 3.86
2241 2248 2.180204 AATGTACGCGGCATCCTGC 61.180 57.895 12.47 0.00 44.08 4.85
2251 2258 4.776322 CATCCTGCGGGGCGTCAA 62.776 66.667 12.87 0.00 34.39 3.18
2252 2259 4.028490 ATCCTGCGGGGCGTCAAA 62.028 61.111 12.87 0.00 34.39 2.69
2267 2274 3.743886 CGTCAAACGCTTCCTAAAATCC 58.256 45.455 0.00 0.00 33.65 3.01
2268 2275 3.435671 CGTCAAACGCTTCCTAAAATCCT 59.564 43.478 0.00 0.00 33.65 3.24
2269 2276 4.628333 CGTCAAACGCTTCCTAAAATCCTA 59.372 41.667 0.00 0.00 33.65 2.94
2270 2277 5.445540 CGTCAAACGCTTCCTAAAATCCTAC 60.446 44.000 0.00 0.00 33.65 3.18
2271 2278 5.410439 GTCAAACGCTTCCTAAAATCCTACA 59.590 40.000 0.00 0.00 0.00 2.74
2272 2279 6.093633 GTCAAACGCTTCCTAAAATCCTACAT 59.906 38.462 0.00 0.00 0.00 2.29
2273 2280 6.093495 TCAAACGCTTCCTAAAATCCTACATG 59.907 38.462 0.00 0.00 0.00 3.21
2274 2281 4.451900 ACGCTTCCTAAAATCCTACATGG 58.548 43.478 0.00 0.00 37.10 3.66
2275 2282 4.080526 ACGCTTCCTAAAATCCTACATGGT 60.081 41.667 0.00 0.00 37.07 3.55
2276 2283 5.129815 ACGCTTCCTAAAATCCTACATGGTA 59.870 40.000 0.00 0.00 37.07 3.25
2277 2284 6.183361 ACGCTTCCTAAAATCCTACATGGTAT 60.183 38.462 0.00 0.00 37.07 2.73
2278 2285 6.147821 CGCTTCCTAAAATCCTACATGGTATG 59.852 42.308 0.00 0.00 37.07 2.39
2279 2286 6.431234 GCTTCCTAAAATCCTACATGGTATGG 59.569 42.308 0.00 0.00 37.07 2.74
2280 2287 7.691791 GCTTCCTAAAATCCTACATGGTATGGA 60.692 40.741 0.00 0.00 37.07 3.41
2281 2288 7.699709 TCCTAAAATCCTACATGGTATGGAA 57.300 36.000 0.00 0.00 37.07 3.53
2282 2289 7.745717 TCCTAAAATCCTACATGGTATGGAAG 58.254 38.462 0.00 0.00 37.07 3.46
2283 2290 6.431234 CCTAAAATCCTACATGGTATGGAAGC 59.569 42.308 0.00 0.00 37.07 3.86
2284 2291 5.387113 AAATCCTACATGGTATGGAAGCA 57.613 39.130 0.00 0.00 40.55 3.91
2286 2293 6.702449 AATCCTACATGGTATGGAAGCATA 57.298 37.500 0.00 0.00 44.47 3.14
2287 2294 5.745312 TCCTACATGGTATGGAAGCATAG 57.255 43.478 0.00 0.00 44.47 2.23
2288 2295 4.532126 TCCTACATGGTATGGAAGCATAGG 59.468 45.833 0.00 0.00 44.47 2.57
2289 2296 4.532126 CCTACATGGTATGGAAGCATAGGA 59.468 45.833 0.00 0.00 44.47 2.94
2290 2297 4.630644 ACATGGTATGGAAGCATAGGAG 57.369 45.455 0.00 0.00 44.47 3.69
2291 2298 3.328931 ACATGGTATGGAAGCATAGGAGG 59.671 47.826 0.00 0.00 44.47 4.30
2292 2299 3.060479 TGGTATGGAAGCATAGGAGGT 57.940 47.619 0.00 0.00 0.00 3.85
2293 2300 3.393687 TGGTATGGAAGCATAGGAGGTT 58.606 45.455 0.00 0.00 0.00 3.50
2294 2301 3.391296 TGGTATGGAAGCATAGGAGGTTC 59.609 47.826 0.00 0.00 43.37 3.62
2295 2302 3.648545 GGTATGGAAGCATAGGAGGTTCT 59.351 47.826 5.96 0.00 43.55 3.01
2296 2303 4.103311 GGTATGGAAGCATAGGAGGTTCTT 59.897 45.833 5.96 0.00 43.55 2.52
2297 2304 3.914426 TGGAAGCATAGGAGGTTCTTC 57.086 47.619 5.96 0.00 43.55 2.87
2298 2305 3.201353 GGAAGCATAGGAGGTTCTTCC 57.799 52.381 3.90 3.90 43.85 3.46
2311 2318 3.709141 AGGTTCTTCCTCTTCCATCTAGC 59.291 47.826 0.00 0.00 44.42 3.42
2312 2319 3.452627 GGTTCTTCCTCTTCCATCTAGCA 59.547 47.826 0.00 0.00 0.00 3.49
2313 2320 4.080863 GGTTCTTCCTCTTCCATCTAGCAA 60.081 45.833 0.00 0.00 0.00 3.91
2314 2321 5.397334 GGTTCTTCCTCTTCCATCTAGCAAT 60.397 44.000 0.00 0.00 0.00 3.56
2315 2322 5.965033 TCTTCCTCTTCCATCTAGCAATT 57.035 39.130 0.00 0.00 0.00 2.32
2316 2323 6.319048 TCTTCCTCTTCCATCTAGCAATTT 57.681 37.500 0.00 0.00 0.00 1.82
2317 2324 6.118170 TCTTCCTCTTCCATCTAGCAATTTG 58.882 40.000 0.00 0.00 0.00 2.32
2318 2325 5.441718 TCCTCTTCCATCTAGCAATTTGT 57.558 39.130 0.00 0.00 0.00 2.83
2319 2326 6.560003 TCCTCTTCCATCTAGCAATTTGTA 57.440 37.500 0.00 0.00 0.00 2.41
2320 2327 6.349300 TCCTCTTCCATCTAGCAATTTGTAC 58.651 40.000 0.00 0.00 0.00 2.90
2321 2328 5.529060 CCTCTTCCATCTAGCAATTTGTACC 59.471 44.000 0.00 0.00 0.00 3.34
2322 2329 5.437060 TCTTCCATCTAGCAATTTGTACCC 58.563 41.667 0.00 0.00 0.00 3.69
2323 2330 4.164843 TCCATCTAGCAATTTGTACCCC 57.835 45.455 0.00 0.00 0.00 4.95
2324 2331 2.878406 CCATCTAGCAATTTGTACCCCG 59.122 50.000 0.00 0.00 0.00 5.73
2325 2332 3.433031 CCATCTAGCAATTTGTACCCCGA 60.433 47.826 0.00 0.00 0.00 5.14
2326 2333 4.389374 CATCTAGCAATTTGTACCCCGAT 58.611 43.478 0.00 0.00 0.00 4.18
2327 2334 4.067972 TCTAGCAATTTGTACCCCGATC 57.932 45.455 0.00 0.00 0.00 3.69
2328 2335 3.709653 TCTAGCAATTTGTACCCCGATCT 59.290 43.478 0.00 0.00 0.00 2.75
2329 2336 2.919228 AGCAATTTGTACCCCGATCTC 58.081 47.619 0.00 0.00 0.00 2.75
2330 2337 1.947456 GCAATTTGTACCCCGATCTCC 59.053 52.381 0.00 0.00 0.00 3.71
2331 2338 2.682563 GCAATTTGTACCCCGATCTCCA 60.683 50.000 0.00 0.00 0.00 3.86
2332 2339 2.943033 CAATTTGTACCCCGATCTCCAC 59.057 50.000 0.00 0.00 0.00 4.02
2333 2340 0.906775 TTTGTACCCCGATCTCCACC 59.093 55.000 0.00 0.00 0.00 4.61
2334 2341 0.979187 TTGTACCCCGATCTCCACCC 60.979 60.000 0.00 0.00 0.00 4.61
2335 2342 1.382146 GTACCCCGATCTCCACCCA 60.382 63.158 0.00 0.00 0.00 4.51
2336 2343 0.763223 GTACCCCGATCTCCACCCAT 60.763 60.000 0.00 0.00 0.00 4.00
2337 2344 0.762842 TACCCCGATCTCCACCCATG 60.763 60.000 0.00 0.00 0.00 3.66
2339 2346 2.111878 CCGATCTCCACCCATGGC 59.888 66.667 6.09 0.00 46.80 4.40
2340 2347 2.111878 CGATCTCCACCCATGGCC 59.888 66.667 6.09 0.00 46.80 5.36
2341 2348 2.745308 CGATCTCCACCCATGGCCA 61.745 63.158 8.56 8.56 46.80 5.36
2342 2349 1.152881 GATCTCCACCCATGGCCAC 60.153 63.158 8.16 0.00 46.80 5.01
2343 2350 2.631012 GATCTCCACCCATGGCCACC 62.631 65.000 8.16 0.00 46.80 4.61
2344 2351 3.660571 CTCCACCCATGGCCACCA 61.661 66.667 8.16 0.00 46.80 4.17
2345 2352 2.946084 TCCACCCATGGCCACCAT 60.946 61.111 8.16 0.00 46.37 3.55
2355 2362 2.830370 GCCACCATGCCTACTGCC 60.830 66.667 0.00 0.00 40.16 4.85
2356 2363 2.514592 CCACCATGCCTACTGCCG 60.515 66.667 0.00 0.00 40.16 5.69
2357 2364 2.268920 CACCATGCCTACTGCCGT 59.731 61.111 0.00 0.00 40.16 5.68
2358 2365 1.815421 CACCATGCCTACTGCCGTC 60.815 63.158 0.00 0.00 40.16 4.79
2359 2366 2.290287 ACCATGCCTACTGCCGTCA 61.290 57.895 0.00 0.00 40.16 4.35
2360 2367 1.522355 CCATGCCTACTGCCGTCAG 60.522 63.158 0.00 0.00 45.71 3.51
2361 2368 1.522355 CATGCCTACTGCCGTCAGG 60.522 63.158 0.00 0.00 44.54 3.86
2362 2369 2.735772 ATGCCTACTGCCGTCAGGG 61.736 63.158 0.00 0.00 44.54 4.45
2390 2397 4.069232 CACGCCGCCCTCAGAGAA 62.069 66.667 0.00 0.00 0.00 2.87
2391 2398 3.311110 ACGCCGCCCTCAGAGAAA 61.311 61.111 0.00 0.00 0.00 2.52
2392 2399 2.815647 CGCCGCCCTCAGAGAAAC 60.816 66.667 0.00 0.00 0.00 2.78
2393 2400 2.665603 GCCGCCCTCAGAGAAACT 59.334 61.111 0.00 0.00 0.00 2.66
2394 2401 1.743252 GCCGCCCTCAGAGAAACTG 60.743 63.158 0.00 0.00 46.97 3.16
2395 2402 1.078848 CCGCCCTCAGAGAAACTGG 60.079 63.158 0.00 0.00 45.76 4.00
2396 2403 1.743252 CGCCCTCAGAGAAACTGGC 60.743 63.158 0.00 1.56 45.76 4.85
2397 2404 1.377856 GCCCTCAGAGAAACTGGCC 60.378 63.158 0.00 0.00 45.76 5.36
2398 2405 2.069776 CCCTCAGAGAAACTGGCCA 58.930 57.895 4.71 4.71 45.76 5.36
2399 2406 0.622665 CCCTCAGAGAAACTGGCCAT 59.377 55.000 5.51 0.00 45.76 4.40
2400 2407 1.839994 CCCTCAGAGAAACTGGCCATA 59.160 52.381 5.51 0.00 45.76 2.74
2401 2408 2.441001 CCCTCAGAGAAACTGGCCATAT 59.559 50.000 5.51 0.00 45.76 1.78
2402 2409 3.474600 CCTCAGAGAAACTGGCCATATG 58.525 50.000 5.51 0.00 45.76 1.78
2403 2410 3.135348 CCTCAGAGAAACTGGCCATATGA 59.865 47.826 5.51 2.67 45.76 2.15
2404 2411 4.384537 CCTCAGAGAAACTGGCCATATGAA 60.385 45.833 5.51 0.00 45.76 2.57
2405 2412 5.178096 TCAGAGAAACTGGCCATATGAAA 57.822 39.130 5.51 0.00 45.76 2.69
2406 2413 5.759059 TCAGAGAAACTGGCCATATGAAAT 58.241 37.500 5.51 0.00 45.76 2.17
2407 2414 5.824624 TCAGAGAAACTGGCCATATGAAATC 59.175 40.000 5.51 0.00 45.76 2.17
2408 2415 5.591472 CAGAGAAACTGGCCATATGAAATCA 59.409 40.000 5.51 0.00 42.39 2.57
2409 2416 5.591877 AGAGAAACTGGCCATATGAAATCAC 59.408 40.000 5.51 0.00 0.00 3.06
2410 2417 4.646492 AGAAACTGGCCATATGAAATCACC 59.354 41.667 5.51 0.00 0.00 4.02
2411 2418 3.959495 ACTGGCCATATGAAATCACCT 57.041 42.857 5.51 0.00 0.00 4.00
2412 2419 3.825328 ACTGGCCATATGAAATCACCTC 58.175 45.455 5.51 0.00 0.00 3.85
2413 2420 3.202818 ACTGGCCATATGAAATCACCTCA 59.797 43.478 5.51 0.00 0.00 3.86
2414 2421 4.141088 ACTGGCCATATGAAATCACCTCAT 60.141 41.667 5.51 0.00 37.32 2.90
2415 2422 4.146564 TGGCCATATGAAATCACCTCATG 58.853 43.478 0.00 0.00 35.21 3.07
2416 2423 4.147321 GGCCATATGAAATCACCTCATGT 58.853 43.478 3.65 0.00 35.21 3.21
2417 2424 4.022589 GGCCATATGAAATCACCTCATGTG 60.023 45.833 3.65 3.39 46.88 3.21
2420 2427 6.947644 CATATGAAATCACCTCATGTGGAA 57.052 37.500 20.43 8.27 45.48 3.53
2421 2428 7.337480 CATATGAAATCACCTCATGTGGAAA 57.663 36.000 20.43 7.92 45.48 3.13
2422 2429 5.909621 ATGAAATCACCTCATGTGGAAAG 57.090 39.130 20.43 9.53 45.48 2.62
2423 2430 4.984295 TGAAATCACCTCATGTGGAAAGA 58.016 39.130 20.43 14.04 45.48 2.52
2424 2431 4.761739 TGAAATCACCTCATGTGGAAAGAC 59.238 41.667 20.43 7.52 45.48 3.01
2425 2432 4.647564 AATCACCTCATGTGGAAAGACT 57.352 40.909 20.43 2.80 45.48 3.24
2426 2433 5.762179 AATCACCTCATGTGGAAAGACTA 57.238 39.130 20.43 0.00 45.48 2.59
2427 2434 4.808414 TCACCTCATGTGGAAAGACTAG 57.192 45.455 20.43 0.00 45.48 2.57
2428 2435 4.416516 TCACCTCATGTGGAAAGACTAGA 58.583 43.478 20.43 2.78 45.48 2.43
2429 2436 5.026121 TCACCTCATGTGGAAAGACTAGAT 58.974 41.667 20.43 0.00 45.48 1.98
2430 2437 5.127845 TCACCTCATGTGGAAAGACTAGATC 59.872 44.000 20.43 0.00 45.48 2.75
2431 2438 5.026121 ACCTCATGTGGAAAGACTAGATCA 58.974 41.667 20.43 0.00 0.00 2.92
2432 2439 5.664908 ACCTCATGTGGAAAGACTAGATCAT 59.335 40.000 20.43 0.00 0.00 2.45
2433 2440 5.990386 CCTCATGTGGAAAGACTAGATCATG 59.010 44.000 8.15 0.00 34.62 3.07
2434 2441 6.407865 CCTCATGTGGAAAGACTAGATCATGT 60.408 42.308 8.15 0.00 34.82 3.21
2435 2442 6.577103 TCATGTGGAAAGACTAGATCATGTC 58.423 40.000 0.00 9.28 34.82 3.06
2436 2443 6.155049 TCATGTGGAAAGACTAGATCATGTCA 59.845 38.462 16.72 0.41 35.81 3.58
2437 2444 5.724328 TGTGGAAAGACTAGATCATGTCAC 58.276 41.667 16.72 9.18 35.81 3.67
2438 2445 5.245977 TGTGGAAAGACTAGATCATGTCACA 59.754 40.000 16.72 11.03 35.81 3.58
2439 2446 6.166279 GTGGAAAGACTAGATCATGTCACAA 58.834 40.000 16.72 3.38 35.81 3.33
2440 2447 6.091441 GTGGAAAGACTAGATCATGTCACAAC 59.909 42.308 16.72 9.59 35.81 3.32
2441 2448 6.014242 TGGAAAGACTAGATCATGTCACAACT 60.014 38.462 16.72 0.00 35.81 3.16
2442 2449 6.312426 GGAAAGACTAGATCATGTCACAACTG 59.688 42.308 16.72 0.00 35.81 3.16
2443 2450 4.753233 AGACTAGATCATGTCACAACTGC 58.247 43.478 16.72 0.00 35.81 4.40
2444 2451 4.221482 AGACTAGATCATGTCACAACTGCA 59.779 41.667 16.72 0.00 35.81 4.41
2445 2452 5.095145 ACTAGATCATGTCACAACTGCAT 57.905 39.130 0.00 0.00 0.00 3.96
2446 2453 4.874396 ACTAGATCATGTCACAACTGCATG 59.126 41.667 0.00 0.00 40.76 4.06
2447 2454 3.014623 AGATCATGTCACAACTGCATGG 58.985 45.455 0.00 0.00 40.07 3.66
2448 2455 1.536940 TCATGTCACAACTGCATGGG 58.463 50.000 0.00 0.00 40.07 4.00
2449 2456 0.528924 CATGTCACAACTGCATGGGG 59.471 55.000 0.00 0.00 37.08 4.96
2450 2457 0.612732 ATGTCACAACTGCATGGGGG 60.613 55.000 0.00 0.00 0.00 5.40
2451 2458 2.283101 TCACAACTGCATGGGGGC 60.283 61.111 0.00 0.00 0.00 5.80
2452 2459 3.384532 CACAACTGCATGGGGGCC 61.385 66.667 0.00 0.00 0.00 5.80
2453 2460 3.593680 ACAACTGCATGGGGGCCT 61.594 61.111 0.84 0.00 0.00 5.19
2454 2461 3.072468 CAACTGCATGGGGGCCTG 61.072 66.667 0.84 0.00 0.00 4.85
2457 2464 3.812544 CTGCATGGGGGCCTGCTA 61.813 66.667 16.14 3.68 39.16 3.49
2458 2465 3.345880 TGCATGGGGGCCTGCTAA 61.346 61.111 16.14 0.00 39.16 3.09
2459 2466 2.043046 GCATGGGGGCCTGCTAAA 60.043 61.111 0.84 0.00 35.49 1.85
2460 2467 1.685421 GCATGGGGGCCTGCTAAAA 60.685 57.895 0.84 0.00 35.49 1.52
2461 2468 1.679559 GCATGGGGGCCTGCTAAAAG 61.680 60.000 0.84 0.00 35.49 2.27
2462 2469 1.044790 CATGGGGGCCTGCTAAAAGG 61.045 60.000 0.84 0.00 40.63 3.11
2470 2477 0.449388 CCTGCTAAAAGGCTTGCTCG 59.551 55.000 0.00 0.00 0.00 5.03
2471 2478 1.442769 CTGCTAAAAGGCTTGCTCGA 58.557 50.000 0.00 0.00 0.00 4.04
2472 2479 1.806542 CTGCTAAAAGGCTTGCTCGAA 59.193 47.619 0.00 0.00 0.00 3.71
2473 2480 1.806542 TGCTAAAAGGCTTGCTCGAAG 59.193 47.619 0.00 0.00 34.41 3.79
2474 2481 1.131315 GCTAAAAGGCTTGCTCGAAGG 59.869 52.381 0.00 0.00 31.56 3.46
2479 2486 3.793144 GCTTGCTCGAAGGCACGG 61.793 66.667 0.00 0.00 42.27 4.94
2480 2487 2.048222 CTTGCTCGAAGGCACGGA 60.048 61.111 0.00 0.00 42.27 4.69
2481 2488 2.357034 TTGCTCGAAGGCACGGAC 60.357 61.111 0.00 0.00 42.27 4.79
2482 2489 4.717629 TGCTCGAAGGCACGGACG 62.718 66.667 0.00 0.00 37.29 4.79
2495 2502 3.110178 GGACGCCCGTTGTCGAAG 61.110 66.667 0.00 0.00 39.71 3.79
2496 2503 2.049802 GACGCCCGTTGTCGAAGA 60.050 61.111 0.00 0.00 39.71 2.87
2508 2515 2.723231 TCGAAGACGGTGGAAGTCA 58.277 52.632 0.00 0.00 40.84 3.41
2509 2516 0.313043 TCGAAGACGGTGGAAGTCAC 59.687 55.000 0.00 0.00 45.34 3.67
2517 2524 3.390003 GTGGAAGTCACAAACGGGA 57.610 52.632 0.00 0.00 45.39 5.14
2518 2525 0.942252 GTGGAAGTCACAAACGGGAC 59.058 55.000 0.00 0.00 45.39 4.46
2519 2526 0.542333 TGGAAGTCACAAACGGGACA 59.458 50.000 0.00 0.00 36.50 4.02
2520 2527 1.065345 TGGAAGTCACAAACGGGACAA 60.065 47.619 0.00 0.00 36.50 3.18
2521 2528 1.602377 GGAAGTCACAAACGGGACAAG 59.398 52.381 0.00 0.00 36.50 3.16
2522 2529 2.557317 GAAGTCACAAACGGGACAAGA 58.443 47.619 0.00 0.00 36.50 3.02
2523 2530 1.949465 AGTCACAAACGGGACAAGAC 58.051 50.000 0.00 0.00 36.50 3.01
2524 2531 1.208535 AGTCACAAACGGGACAAGACA 59.791 47.619 0.00 0.00 36.50 3.41
2525 2532 2.011222 GTCACAAACGGGACAAGACAA 58.989 47.619 0.00 0.00 34.22 3.18
2526 2533 2.011222 TCACAAACGGGACAAGACAAC 58.989 47.619 0.00 0.00 0.00 3.32
2527 2534 1.011333 ACAAACGGGACAAGACAACG 58.989 50.000 0.00 0.00 0.00 4.10
2528 2535 0.306533 CAAACGGGACAAGACAACGG 59.693 55.000 0.00 0.00 0.00 4.44
2529 2536 0.816421 AAACGGGACAAGACAACGGG 60.816 55.000 0.00 0.00 0.00 5.28
2530 2537 3.047877 CGGGACAAGACAACGGGC 61.048 66.667 0.00 0.00 0.00 6.13
2531 2538 2.430367 GGGACAAGACAACGGGCT 59.570 61.111 0.00 0.00 0.00 5.19
2532 2539 1.675219 GGGACAAGACAACGGGCTA 59.325 57.895 0.00 0.00 0.00 3.93
2533 2540 0.391263 GGGACAAGACAACGGGCTAG 60.391 60.000 0.00 0.00 0.00 3.42
2534 2541 0.391263 GGACAAGACAACGGGCTAGG 60.391 60.000 0.00 0.00 0.00 3.02
2535 2542 1.003718 ACAAGACAACGGGCTAGGC 60.004 57.895 8.00 8.00 0.00 3.93
2536 2543 1.003839 CAAGACAACGGGCTAGGCA 60.004 57.895 19.14 0.00 0.00 4.75
2537 2544 1.003718 AAGACAACGGGCTAGGCAC 60.004 57.895 19.14 6.67 0.00 5.01
2538 2545 2.436115 GACAACGGGCTAGGCACC 60.436 66.667 19.14 0.15 0.00 5.01
2539 2546 3.971109 GACAACGGGCTAGGCACCC 62.971 68.421 19.14 6.23 44.63 4.61
2545 2552 4.442454 GGCTAGGCACCCAACCCC 62.442 72.222 12.16 0.00 0.00 4.95
2546 2553 4.442454 GCTAGGCACCCAACCCCC 62.442 72.222 0.00 0.00 0.00 5.40
2547 2554 2.614013 CTAGGCACCCAACCCCCT 60.614 66.667 0.00 0.00 0.00 4.79
2548 2555 2.612746 TAGGCACCCAACCCCCTC 60.613 66.667 0.00 0.00 0.00 4.30
2549 2556 3.202591 TAGGCACCCAACCCCCTCT 62.203 63.158 0.00 0.00 0.00 3.69
2550 2557 1.828602 TAGGCACCCAACCCCCTCTA 61.829 60.000 0.00 0.00 0.00 2.43
2551 2558 2.675371 GCACCCAACCCCCTCTAC 59.325 66.667 0.00 0.00 0.00 2.59
2552 2559 2.228480 GCACCCAACCCCCTCTACA 61.228 63.158 0.00 0.00 0.00 2.74
2553 2560 1.683441 CACCCAACCCCCTCTACAC 59.317 63.158 0.00 0.00 0.00 2.90
2554 2561 0.840722 CACCCAACCCCCTCTACACT 60.841 60.000 0.00 0.00 0.00 3.55
2555 2562 0.794934 ACCCAACCCCCTCTACACTA 59.205 55.000 0.00 0.00 0.00 2.74
2556 2563 1.368558 ACCCAACCCCCTCTACACTAT 59.631 52.381 0.00 0.00 0.00 2.12
2557 2564 2.593466 ACCCAACCCCCTCTACACTATA 59.407 50.000 0.00 0.00 0.00 1.31
2558 2565 3.240302 CCCAACCCCCTCTACACTATAG 58.760 54.545 0.00 0.00 0.00 1.31
2559 2566 3.240302 CCAACCCCCTCTACACTATAGG 58.760 54.545 4.43 0.00 0.00 2.57
2560 2567 2.633481 CAACCCCCTCTACACTATAGGC 59.367 54.545 4.43 0.00 0.00 3.93
2561 2568 1.203025 ACCCCCTCTACACTATAGGCG 60.203 57.143 4.43 0.00 0.00 5.52
2562 2569 1.075050 CCCCCTCTACACTATAGGCGA 59.925 57.143 4.43 0.00 0.00 5.54
2563 2570 2.291670 CCCCCTCTACACTATAGGCGAT 60.292 54.545 4.43 0.00 0.00 4.58
2564 2571 2.755655 CCCCTCTACACTATAGGCGATG 59.244 54.545 4.43 0.00 0.00 3.84
2565 2572 2.164624 CCCTCTACACTATAGGCGATGC 59.835 54.545 4.43 0.00 0.00 3.91
2566 2573 2.159503 CCTCTACACTATAGGCGATGCG 60.160 54.545 4.43 0.00 0.00 4.73
2577 2584 3.392431 CGATGCGCAAGGAGACTG 58.608 61.111 17.11 0.00 45.13 3.51
2578 2585 2.806856 CGATGCGCAAGGAGACTGC 61.807 63.158 17.11 0.00 45.13 4.40
2579 2586 2.437359 ATGCGCAAGGAGACTGCC 60.437 61.111 17.11 0.00 45.13 4.85
2599 2606 4.148825 GGCGACCTGGACTGCGAT 62.149 66.667 0.00 0.00 0.00 4.58
2600 2607 2.583593 GCGACCTGGACTGCGATC 60.584 66.667 0.00 0.00 0.00 3.69
2601 2608 2.885113 CGACCTGGACTGCGATCA 59.115 61.111 0.00 0.00 0.00 2.92
2602 2609 1.215382 CGACCTGGACTGCGATCAA 59.785 57.895 0.00 0.00 0.00 2.57
2603 2610 0.389817 CGACCTGGACTGCGATCAAA 60.390 55.000 0.00 0.00 0.00 2.69
2604 2611 1.808411 GACCTGGACTGCGATCAAAA 58.192 50.000 0.00 0.00 0.00 2.44
2605 2612 1.464997 GACCTGGACTGCGATCAAAAC 59.535 52.381 0.00 0.00 0.00 2.43
2606 2613 0.804989 CCTGGACTGCGATCAAAACC 59.195 55.000 0.00 0.00 0.00 3.27
2607 2614 1.522668 CTGGACTGCGATCAAAACCA 58.477 50.000 0.00 0.00 0.00 3.67
2608 2615 2.086869 CTGGACTGCGATCAAAACCAT 58.913 47.619 0.00 0.00 0.00 3.55
2609 2616 1.811965 TGGACTGCGATCAAAACCATG 59.188 47.619 0.00 0.00 0.00 3.66
2610 2617 1.812571 GGACTGCGATCAAAACCATGT 59.187 47.619 0.00 0.00 0.00 3.21
2611 2618 2.228822 GGACTGCGATCAAAACCATGTT 59.771 45.455 0.00 0.00 0.00 2.71
2612 2619 3.492313 GACTGCGATCAAAACCATGTTC 58.508 45.455 0.00 0.00 0.00 3.18
2613 2620 2.095768 ACTGCGATCAAAACCATGTTCG 60.096 45.455 0.00 4.00 42.51 3.95
2614 2621 1.876799 TGCGATCAAAACCATGTTCGT 59.123 42.857 8.86 0.00 41.95 3.85
2615 2622 2.241722 GCGATCAAAACCATGTTCGTG 58.758 47.619 8.86 0.00 41.95 4.35
2616 2623 2.350388 GCGATCAAAACCATGTTCGTGT 60.350 45.455 8.86 0.00 41.95 4.49
2617 2624 3.479006 CGATCAAAACCATGTTCGTGTC 58.521 45.455 0.00 0.00 37.61 3.67
2618 2625 3.666902 CGATCAAAACCATGTTCGTGTCC 60.667 47.826 0.00 0.00 37.61 4.02
2619 2626 2.925724 TCAAAACCATGTTCGTGTCCT 58.074 42.857 0.00 0.00 0.00 3.85
2620 2627 4.074627 TCAAAACCATGTTCGTGTCCTA 57.925 40.909 0.00 0.00 0.00 2.94
2621 2628 4.062293 TCAAAACCATGTTCGTGTCCTAG 58.938 43.478 0.00 0.00 0.00 3.02
2622 2629 2.094762 AACCATGTTCGTGTCCTAGC 57.905 50.000 0.00 0.00 0.00 3.42
2623 2630 0.249398 ACCATGTTCGTGTCCTAGCC 59.751 55.000 0.00 0.00 0.00 3.93
2624 2631 0.249120 CCATGTTCGTGTCCTAGCCA 59.751 55.000 0.00 0.00 0.00 4.75
2625 2632 1.359848 CATGTTCGTGTCCTAGCCAC 58.640 55.000 1.71 1.71 0.00 5.01
2626 2633 1.066858 CATGTTCGTGTCCTAGCCACT 60.067 52.381 8.56 0.00 0.00 4.00
2627 2634 0.601558 TGTTCGTGTCCTAGCCACTC 59.398 55.000 8.56 0.00 0.00 3.51
2628 2635 0.889306 GTTCGTGTCCTAGCCACTCT 59.111 55.000 8.56 0.00 0.00 3.24
2629 2636 1.135344 GTTCGTGTCCTAGCCACTCTC 60.135 57.143 8.56 0.00 0.00 3.20
2630 2637 0.328592 TCGTGTCCTAGCCACTCTCT 59.671 55.000 8.56 0.00 0.00 3.10
2631 2638 0.736053 CGTGTCCTAGCCACTCTCTC 59.264 60.000 8.56 0.00 0.00 3.20
2632 2639 0.736053 GTGTCCTAGCCACTCTCTCG 59.264 60.000 4.10 0.00 0.00 4.04
2633 2640 0.394488 TGTCCTAGCCACTCTCTCGG 60.394 60.000 0.00 0.00 0.00 4.63
2634 2641 0.107116 GTCCTAGCCACTCTCTCGGA 60.107 60.000 0.00 0.00 0.00 4.55
2635 2642 0.847373 TCCTAGCCACTCTCTCGGAT 59.153 55.000 0.00 0.00 0.00 4.18
2636 2643 1.215673 TCCTAGCCACTCTCTCGGATT 59.784 52.381 0.00 0.00 0.00 3.01
2637 2644 2.442126 TCCTAGCCACTCTCTCGGATTA 59.558 50.000 0.00 0.00 0.00 1.75
2638 2645 2.817258 CCTAGCCACTCTCTCGGATTAG 59.183 54.545 0.00 0.00 0.00 1.73
2639 2646 2.738587 AGCCACTCTCTCGGATTAGA 57.261 50.000 0.00 0.00 0.00 2.10
2640 2647 3.019799 AGCCACTCTCTCGGATTAGAA 57.980 47.619 0.00 0.00 0.00 2.10
2641 2648 3.366396 AGCCACTCTCTCGGATTAGAAA 58.634 45.455 0.00 0.00 0.00 2.52
2642 2649 3.131400 AGCCACTCTCTCGGATTAGAAAC 59.869 47.826 0.00 0.00 0.00 2.78
2643 2650 3.738590 GCCACTCTCTCGGATTAGAAACC 60.739 52.174 0.00 0.00 0.00 3.27
2644 2651 3.702045 CCACTCTCTCGGATTAGAAACCT 59.298 47.826 0.00 0.00 0.00 3.50
2645 2652 4.440802 CCACTCTCTCGGATTAGAAACCTG 60.441 50.000 0.00 0.00 0.00 4.00
2646 2653 4.399618 CACTCTCTCGGATTAGAAACCTGA 59.600 45.833 0.00 0.00 0.00 3.86
2647 2654 4.642885 ACTCTCTCGGATTAGAAACCTGAG 59.357 45.833 0.00 0.00 0.00 3.35
2648 2655 4.856509 TCTCTCGGATTAGAAACCTGAGA 58.143 43.478 0.00 0.00 35.92 3.27
2649 2656 4.884744 TCTCTCGGATTAGAAACCTGAGAG 59.115 45.833 21.05 21.05 44.65 3.20
2650 2657 4.601084 TCTCGGATTAGAAACCTGAGAGT 58.399 43.478 0.00 0.00 34.10 3.24
2651 2658 4.641094 TCTCGGATTAGAAACCTGAGAGTC 59.359 45.833 0.00 0.00 34.10 3.36
2652 2659 3.377485 TCGGATTAGAAACCTGAGAGTCG 59.623 47.826 0.00 0.00 0.00 4.18
2653 2660 3.449632 GGATTAGAAACCTGAGAGTCGC 58.550 50.000 0.00 0.00 0.00 5.19
2654 2661 3.131400 GGATTAGAAACCTGAGAGTCGCT 59.869 47.826 0.00 0.00 0.00 4.93
2655 2662 4.338682 GGATTAGAAACCTGAGAGTCGCTA 59.661 45.833 0.00 0.00 0.00 4.26
2656 2663 5.010213 GGATTAGAAACCTGAGAGTCGCTAT 59.990 44.000 0.00 0.00 0.00 2.97
2657 2664 5.502153 TTAGAAACCTGAGAGTCGCTATC 57.498 43.478 0.00 0.00 0.00 2.08
2658 2665 3.357203 AGAAACCTGAGAGTCGCTATCA 58.643 45.455 4.55 4.55 30.73 2.15
2659 2666 3.129638 AGAAACCTGAGAGTCGCTATCAC 59.870 47.826 0.00 0.00 28.42 3.06
2660 2667 1.394618 ACCTGAGAGTCGCTATCACC 58.605 55.000 0.00 0.00 28.42 4.02
2661 2668 1.341089 ACCTGAGAGTCGCTATCACCA 60.341 52.381 0.00 0.00 28.42 4.17
2662 2669 1.751351 CCTGAGAGTCGCTATCACCAA 59.249 52.381 0.00 0.00 28.42 3.67
2663 2670 2.363680 CCTGAGAGTCGCTATCACCAAT 59.636 50.000 0.00 0.00 28.42 3.16
2664 2671 3.570125 CCTGAGAGTCGCTATCACCAATA 59.430 47.826 0.00 0.00 28.42 1.90
2665 2672 4.541779 CTGAGAGTCGCTATCACCAATAC 58.458 47.826 0.00 0.00 28.42 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.839820 AATAAACTCGACGGGATAATTGAC 57.160 37.500 0.00 0.00 0.00 3.18
46 47 8.703743 AGAAACATCTAGCAGAATGAGACTATT 58.296 33.333 0.00 0.00 39.69 1.73
48 49 7.340487 TGAGAAACATCTAGCAGAATGAGACTA 59.660 37.037 0.00 0.00 39.69 2.59
99 100 4.467082 TGCTTCAAATTGCCCATATCAACT 59.533 37.500 0.00 0.00 0.00 3.16
127 128 0.461693 GCAGAGAGGTCCATGCTGTC 60.462 60.000 0.00 0.00 35.78 3.51
195 196 4.041075 TGTGACAGGTTCAAGTAGGCAATA 59.959 41.667 0.00 0.00 35.39 1.90
198 199 1.765904 TGTGACAGGTTCAAGTAGGCA 59.234 47.619 0.00 0.00 35.39 4.75
313 314 6.833041 TGGTGAAATTGACTAGGTACTTTGA 58.167 36.000 0.00 0.00 41.75 2.69
348 349 4.462483 AGCTTGTTGAAAGACAGGTTCAAA 59.538 37.500 1.42 0.00 44.35 2.69
427 428 2.094026 CACAAAGCCCTAAATTCCCTGC 60.094 50.000 0.00 0.00 0.00 4.85
429 430 2.111792 ACCACAAAGCCCTAAATTCCCT 59.888 45.455 0.00 0.00 0.00 4.20
437 438 0.476338 TGAAGCACCACAAAGCCCTA 59.524 50.000 0.00 0.00 0.00 3.53
526 528 9.116080 TCCAATTGTTATGATGATAGTAGGGAT 57.884 33.333 4.43 0.00 0.00 3.85
544 546 4.022849 GCAGAAAGCTACAAGTCCAATTGT 60.023 41.667 4.43 0.00 45.19 2.71
603 605 1.280421 GGAGAAGCTGACATCCCTTGT 59.720 52.381 0.00 0.00 42.79 3.16
985 987 2.816672 CGAGCATGATGCCTAGTCTCTA 59.183 50.000 14.72 0.00 46.52 2.43
1194 1196 4.417426 AATAGTACCTGGTGCCATGTAC 57.583 45.455 21.37 21.37 43.50 2.90
1459 1462 5.876651 AGTAGCTGATCATCCATAACACA 57.123 39.130 0.00 0.00 0.00 3.72
1465 1468 4.285517 CCCTTGTAGTAGCTGATCATCCAT 59.714 45.833 0.00 0.00 0.00 3.41
1498 1501 1.138247 GAAAGCCTTCCATGCTGCG 59.862 57.895 0.00 0.00 39.48 5.18
1564 1567 2.489329 CGCTCATTGTCATCCTTTGGTT 59.511 45.455 0.00 0.00 0.00 3.67
1624 1627 2.068519 TGCGGCTGCTATCGATTTATG 58.931 47.619 20.27 0.00 43.34 1.90
1646 1649 4.639310 GTGATCAATGACTGGCTTCATTCT 59.361 41.667 10.74 3.86 43.08 2.40
1666 1669 1.814394 GCCAGCAATGTTGATCAGTGA 59.186 47.619 0.00 0.00 43.71 3.41
1667 1670 1.816835 AGCCAGCAATGTTGATCAGTG 59.183 47.619 0.00 0.00 43.82 3.66
1668 1671 2.211250 AGCCAGCAATGTTGATCAGT 57.789 45.000 0.00 0.00 0.00 3.41
1669 1672 2.490509 TGAAGCCAGCAATGTTGATCAG 59.509 45.455 0.00 0.00 0.00 2.90
1670 1673 2.229543 GTGAAGCCAGCAATGTTGATCA 59.770 45.455 0.00 0.00 0.00 2.92
1671 1674 2.490903 AGTGAAGCCAGCAATGTTGATC 59.509 45.455 0.00 0.00 0.00 2.92
1672 1675 2.490903 GAGTGAAGCCAGCAATGTTGAT 59.509 45.455 0.00 0.00 0.00 2.57
1684 1691 7.969536 TTTTGATATATAGCAGAGTGAAGCC 57.030 36.000 0.30 0.00 0.00 4.35
2036 2043 7.373493 AGCTTTTTGACATCTTGAATTCGATT 58.627 30.769 0.04 0.00 0.00 3.34
2037 2044 6.917533 AGCTTTTTGACATCTTGAATTCGAT 58.082 32.000 0.04 0.00 0.00 3.59
2038 2045 6.317789 AGCTTTTTGACATCTTGAATTCGA 57.682 33.333 0.04 0.00 0.00 3.71
2107 2114 9.599866 CAAACAGTGTACAATGATAGGATCTAA 57.400 33.333 28.47 0.00 0.00 2.10
2127 2134 8.410141 TGTTAAGGTTTTATCTCAACCAAACAG 58.590 33.333 14.14 0.00 45.55 3.16
2128 2135 8.294954 TGTTAAGGTTTTATCTCAACCAAACA 57.705 30.769 14.14 14.14 45.55 2.83
2173 2180 7.136119 CGTAACAACATACACACAAGGAAAAT 58.864 34.615 0.00 0.00 0.00 1.82
2186 2193 4.271776 GGTGCTTATCCCGTAACAACATAC 59.728 45.833 0.00 0.00 0.00 2.39
2187 2194 4.444536 GGTGCTTATCCCGTAACAACATA 58.555 43.478 0.00 0.00 0.00 2.29
2188 2195 3.275999 GGTGCTTATCCCGTAACAACAT 58.724 45.455 0.00 0.00 0.00 2.71
2189 2196 2.702261 GGTGCTTATCCCGTAACAACA 58.298 47.619 0.00 0.00 0.00 3.33
2190 2197 1.662122 CGGTGCTTATCCCGTAACAAC 59.338 52.381 0.00 0.00 39.38 3.32
2191 2198 2.008045 GCGGTGCTTATCCCGTAACAA 61.008 52.381 0.00 0.00 45.91 2.83
2192 2199 0.460635 GCGGTGCTTATCCCGTAACA 60.461 55.000 0.00 0.00 45.91 2.41
2193 2200 1.156034 GGCGGTGCTTATCCCGTAAC 61.156 60.000 0.00 0.00 45.91 2.50
2194 2201 1.144496 GGCGGTGCTTATCCCGTAA 59.856 57.895 0.00 0.00 45.91 3.18
2195 2202 1.404479 ATGGCGGTGCTTATCCCGTA 61.404 55.000 0.00 0.00 45.91 4.02
2196 2203 1.404479 TATGGCGGTGCTTATCCCGT 61.404 55.000 0.00 0.00 45.91 5.28
2197 2204 0.036388 ATATGGCGGTGCTTATCCCG 60.036 55.000 0.00 0.00 46.90 5.14
2198 2205 3.343941 TTATATGGCGGTGCTTATCCC 57.656 47.619 0.00 0.00 0.00 3.85
2199 2206 5.878116 TGTATTTATATGGCGGTGCTTATCC 59.122 40.000 0.00 0.00 0.00 2.59
2200 2207 6.978343 TGTATTTATATGGCGGTGCTTATC 57.022 37.500 0.00 0.00 0.00 1.75
2201 2208 7.393234 ACATTGTATTTATATGGCGGTGCTTAT 59.607 33.333 0.00 0.00 0.00 1.73
2202 2209 6.712998 ACATTGTATTTATATGGCGGTGCTTA 59.287 34.615 0.00 0.00 0.00 3.09
2203 2210 5.534654 ACATTGTATTTATATGGCGGTGCTT 59.465 36.000 0.00 0.00 0.00 3.91
2204 2211 5.070001 ACATTGTATTTATATGGCGGTGCT 58.930 37.500 0.00 0.00 0.00 4.40
2205 2212 5.371115 ACATTGTATTTATATGGCGGTGC 57.629 39.130 0.00 0.00 0.00 5.01
2206 2213 6.530567 CGTACATTGTATTTATATGGCGGTG 58.469 40.000 0.00 0.00 0.00 4.94
2207 2214 5.121142 GCGTACATTGTATTTATATGGCGGT 59.879 40.000 0.00 0.00 0.00 5.68
2208 2215 5.556470 GCGTACATTGTATTTATATGGCGG 58.444 41.667 0.00 0.00 0.00 6.13
2209 2216 5.245105 CGCGTACATTGTATTTATATGGCG 58.755 41.667 0.00 2.92 0.00 5.69
2210 2217 5.556470 CCGCGTACATTGTATTTATATGGC 58.444 41.667 4.92 0.00 0.00 4.40
2211 2218 5.120986 TGCCGCGTACATTGTATTTATATGG 59.879 40.000 4.92 0.00 0.00 2.74
2212 2219 6.159419 TGCCGCGTACATTGTATTTATATG 57.841 37.500 4.92 0.00 0.00 1.78
2213 2220 6.036735 GGATGCCGCGTACATTGTATTTATAT 59.963 38.462 12.45 0.00 0.00 0.86
2214 2221 5.349270 GGATGCCGCGTACATTGTATTTATA 59.651 40.000 12.45 0.00 0.00 0.98
2215 2222 4.153475 GGATGCCGCGTACATTGTATTTAT 59.847 41.667 12.45 0.00 0.00 1.40
2216 2223 3.495377 GGATGCCGCGTACATTGTATTTA 59.505 43.478 12.45 0.00 0.00 1.40
2217 2224 2.289547 GGATGCCGCGTACATTGTATTT 59.710 45.455 12.45 0.00 0.00 1.40
2218 2225 1.871039 GGATGCCGCGTACATTGTATT 59.129 47.619 12.45 0.00 0.00 1.89
2219 2226 1.070134 AGGATGCCGCGTACATTGTAT 59.930 47.619 12.45 0.00 0.00 2.29
2220 2227 0.462375 AGGATGCCGCGTACATTGTA 59.538 50.000 12.45 0.00 0.00 2.41
2221 2228 1.089481 CAGGATGCCGCGTACATTGT 61.089 55.000 12.45 0.00 0.00 2.71
2222 2229 1.643292 CAGGATGCCGCGTACATTG 59.357 57.895 12.45 5.28 0.00 2.82
2223 2230 4.124910 CAGGATGCCGCGTACATT 57.875 55.556 12.45 0.00 0.00 2.71
2246 2253 3.435671 AGGATTTTAGGAAGCGTTTGACG 59.564 43.478 0.00 0.00 45.88 4.35
2247 2254 5.410439 TGTAGGATTTTAGGAAGCGTTTGAC 59.590 40.000 0.00 0.00 0.00 3.18
2248 2255 5.553123 TGTAGGATTTTAGGAAGCGTTTGA 58.447 37.500 0.00 0.00 0.00 2.69
2249 2256 5.873179 TGTAGGATTTTAGGAAGCGTTTG 57.127 39.130 0.00 0.00 0.00 2.93
2250 2257 5.357032 CCATGTAGGATTTTAGGAAGCGTTT 59.643 40.000 0.00 0.00 41.22 3.60
2251 2258 4.881850 CCATGTAGGATTTTAGGAAGCGTT 59.118 41.667 0.00 0.00 41.22 4.84
2252 2259 4.080526 ACCATGTAGGATTTTAGGAAGCGT 60.081 41.667 0.00 0.00 41.22 5.07
2253 2260 4.451900 ACCATGTAGGATTTTAGGAAGCG 58.548 43.478 0.00 0.00 41.22 4.68
2254 2261 6.431234 CCATACCATGTAGGATTTTAGGAAGC 59.569 42.308 0.00 0.00 41.22 3.86
2255 2262 7.745717 TCCATACCATGTAGGATTTTAGGAAG 58.254 38.462 0.00 0.00 41.22 3.46
2256 2263 7.699709 TCCATACCATGTAGGATTTTAGGAA 57.300 36.000 0.00 0.00 41.22 3.36
2257 2264 7.691791 GCTTCCATACCATGTAGGATTTTAGGA 60.692 40.741 0.00 0.00 41.22 2.94
2258 2265 6.431234 GCTTCCATACCATGTAGGATTTTAGG 59.569 42.308 0.00 0.00 41.22 2.69
2259 2266 6.998074 TGCTTCCATACCATGTAGGATTTTAG 59.002 38.462 0.00 0.00 41.22 1.85
2260 2267 6.905736 TGCTTCCATACCATGTAGGATTTTA 58.094 36.000 0.00 0.00 41.22 1.52
2261 2268 5.765510 TGCTTCCATACCATGTAGGATTTT 58.234 37.500 0.00 0.00 41.22 1.82
2262 2269 5.387113 TGCTTCCATACCATGTAGGATTT 57.613 39.130 0.00 0.00 41.22 2.17
2263 2270 5.589367 ATGCTTCCATACCATGTAGGATT 57.411 39.130 0.00 0.00 41.22 3.01
2264 2271 5.190528 CCTATGCTTCCATACCATGTAGGAT 59.809 44.000 0.00 0.00 35.54 3.24
2265 2272 4.532126 CCTATGCTTCCATACCATGTAGGA 59.468 45.833 0.00 0.00 35.54 2.94
2266 2273 4.532126 TCCTATGCTTCCATACCATGTAGG 59.468 45.833 0.00 0.00 36.78 3.18
2267 2274 5.337894 CCTCCTATGCTTCCATACCATGTAG 60.338 48.000 0.00 0.00 32.85 2.74
2268 2275 4.532126 CCTCCTATGCTTCCATACCATGTA 59.468 45.833 0.00 0.00 32.85 2.29
2269 2276 3.328931 CCTCCTATGCTTCCATACCATGT 59.671 47.826 0.00 0.00 32.85 3.21
2270 2277 3.328931 ACCTCCTATGCTTCCATACCATG 59.671 47.826 0.00 0.00 32.85 3.66
2271 2278 3.602608 ACCTCCTATGCTTCCATACCAT 58.397 45.455 0.00 0.00 32.85 3.55
2272 2279 3.060479 ACCTCCTATGCTTCCATACCA 57.940 47.619 0.00 0.00 32.85 3.25
2273 2280 3.648545 AGAACCTCCTATGCTTCCATACC 59.351 47.826 0.00 0.00 32.85 2.73
2274 2281 4.965200 AGAACCTCCTATGCTTCCATAC 57.035 45.455 0.00 0.00 32.85 2.39
2275 2282 5.552870 GAAGAACCTCCTATGCTTCCATA 57.447 43.478 0.00 0.00 32.85 2.74
2276 2283 4.429854 GAAGAACCTCCTATGCTTCCAT 57.570 45.455 0.00 0.00 35.44 3.41
2277 2284 3.914426 GAAGAACCTCCTATGCTTCCA 57.086 47.619 0.00 0.00 31.24 3.53
2278 2285 3.201353 GGAAGAACCTCCTATGCTTCC 57.799 52.381 0.00 0.00 45.27 3.46
2290 2297 3.452627 TGCTAGATGGAAGAGGAAGAACC 59.547 47.826 0.00 0.00 39.35 3.62
2291 2298 4.744795 TGCTAGATGGAAGAGGAAGAAC 57.255 45.455 0.00 0.00 0.00 3.01
2292 2299 5.965033 ATTGCTAGATGGAAGAGGAAGAA 57.035 39.130 0.00 0.00 0.00 2.52
2293 2300 5.965033 AATTGCTAGATGGAAGAGGAAGA 57.035 39.130 0.00 0.00 0.00 2.87
2294 2301 5.884792 ACAAATTGCTAGATGGAAGAGGAAG 59.115 40.000 0.00 0.00 0.00 3.46
2295 2302 5.819991 ACAAATTGCTAGATGGAAGAGGAA 58.180 37.500 0.00 0.00 0.00 3.36
2296 2303 5.441718 ACAAATTGCTAGATGGAAGAGGA 57.558 39.130 0.00 0.00 0.00 3.71
2297 2304 5.529060 GGTACAAATTGCTAGATGGAAGAGG 59.471 44.000 0.00 0.00 0.00 3.69
2298 2305 5.529060 GGGTACAAATTGCTAGATGGAAGAG 59.471 44.000 0.00 0.00 0.00 2.85
2299 2306 5.437060 GGGTACAAATTGCTAGATGGAAGA 58.563 41.667 0.00 0.00 0.00 2.87
2300 2307 4.580580 GGGGTACAAATTGCTAGATGGAAG 59.419 45.833 0.00 0.00 0.00 3.46
2301 2308 4.532834 GGGGTACAAATTGCTAGATGGAA 58.467 43.478 0.00 0.00 0.00 3.53
2302 2309 3.433031 CGGGGTACAAATTGCTAGATGGA 60.433 47.826 0.00 0.00 0.00 3.41
2303 2310 2.878406 CGGGGTACAAATTGCTAGATGG 59.122 50.000 0.00 0.00 0.00 3.51
2304 2311 3.804036 TCGGGGTACAAATTGCTAGATG 58.196 45.455 0.00 0.00 0.00 2.90
2305 2312 4.348168 AGATCGGGGTACAAATTGCTAGAT 59.652 41.667 0.00 0.00 0.00 1.98
2306 2313 3.709653 AGATCGGGGTACAAATTGCTAGA 59.290 43.478 0.00 0.00 0.00 2.43
2307 2314 4.058817 GAGATCGGGGTACAAATTGCTAG 58.941 47.826 0.00 0.00 0.00 3.42
2308 2315 3.181458 GGAGATCGGGGTACAAATTGCTA 60.181 47.826 0.00 0.00 0.00 3.49
2309 2316 2.421529 GGAGATCGGGGTACAAATTGCT 60.422 50.000 0.00 0.00 0.00 3.91
2310 2317 1.947456 GGAGATCGGGGTACAAATTGC 59.053 52.381 0.00 0.00 0.00 3.56
2311 2318 2.943033 GTGGAGATCGGGGTACAAATTG 59.057 50.000 0.00 0.00 0.00 2.32
2312 2319 2.092592 GGTGGAGATCGGGGTACAAATT 60.093 50.000 0.00 0.00 0.00 1.82
2313 2320 1.489230 GGTGGAGATCGGGGTACAAAT 59.511 52.381 0.00 0.00 0.00 2.32
2314 2321 0.906775 GGTGGAGATCGGGGTACAAA 59.093 55.000 0.00 0.00 0.00 2.83
2315 2322 0.979187 GGGTGGAGATCGGGGTACAA 60.979 60.000 0.00 0.00 0.00 2.41
2316 2323 1.382146 GGGTGGAGATCGGGGTACA 60.382 63.158 0.00 0.00 0.00 2.90
2317 2324 0.763223 ATGGGTGGAGATCGGGGTAC 60.763 60.000 0.00 0.00 0.00 3.34
2318 2325 0.762842 CATGGGTGGAGATCGGGGTA 60.763 60.000 0.00 0.00 0.00 3.69
2319 2326 2.072487 CATGGGTGGAGATCGGGGT 61.072 63.158 0.00 0.00 0.00 4.95
2320 2327 2.831770 CATGGGTGGAGATCGGGG 59.168 66.667 0.00 0.00 0.00 5.73
2373 2380 3.589654 TTTCTCTGAGGGCGGCGTG 62.590 63.158 9.59 0.00 0.00 5.34
2374 2381 3.311110 TTTCTCTGAGGGCGGCGT 61.311 61.111 9.37 2.92 0.00 5.68
2375 2382 2.815647 GTTTCTCTGAGGGCGGCG 60.816 66.667 0.51 0.51 0.00 6.46
2376 2383 1.743252 CAGTTTCTCTGAGGGCGGC 60.743 63.158 0.00 0.00 46.27 6.53
2377 2384 1.078848 CCAGTTTCTCTGAGGGCGG 60.079 63.158 4.59 0.00 46.27 6.13
2378 2385 1.743252 GCCAGTTTCTCTGAGGGCG 60.743 63.158 4.59 0.00 46.27 6.13
2379 2386 1.377856 GGCCAGTTTCTCTGAGGGC 60.378 63.158 11.93 11.93 46.27 5.19
2380 2387 0.622665 ATGGCCAGTTTCTCTGAGGG 59.377 55.000 13.05 0.00 46.27 4.30
2381 2388 3.135348 TCATATGGCCAGTTTCTCTGAGG 59.865 47.826 13.05 0.00 46.27 3.86
2382 2389 4.412796 TCATATGGCCAGTTTCTCTGAG 57.587 45.455 13.05 0.00 46.27 3.35
2383 2390 4.842531 TTCATATGGCCAGTTTCTCTGA 57.157 40.909 13.05 0.00 46.27 3.27
2384 2391 5.591472 TGATTTCATATGGCCAGTTTCTCTG 59.409 40.000 13.05 0.00 43.27 3.35
2385 2392 5.591877 GTGATTTCATATGGCCAGTTTCTCT 59.408 40.000 13.05 0.00 0.00 3.10
2386 2393 5.221126 GGTGATTTCATATGGCCAGTTTCTC 60.221 44.000 13.05 2.59 0.00 2.87
2387 2394 4.646492 GGTGATTTCATATGGCCAGTTTCT 59.354 41.667 13.05 0.00 0.00 2.52
2388 2395 4.646492 AGGTGATTTCATATGGCCAGTTTC 59.354 41.667 13.05 1.66 0.00 2.78
2389 2396 4.613437 AGGTGATTTCATATGGCCAGTTT 58.387 39.130 13.05 0.00 0.00 2.66
2390 2397 4.210331 GAGGTGATTTCATATGGCCAGTT 58.790 43.478 13.05 0.00 0.00 3.16
2391 2398 3.202818 TGAGGTGATTTCATATGGCCAGT 59.797 43.478 13.05 0.00 0.00 4.00
2392 2399 3.824133 TGAGGTGATTTCATATGGCCAG 58.176 45.455 13.05 0.00 0.00 4.85
2393 2400 3.949586 TGAGGTGATTTCATATGGCCA 57.050 42.857 8.56 8.56 0.00 5.36
2394 2401 4.147321 ACATGAGGTGATTTCATATGGCC 58.853 43.478 0.00 0.00 33.67 5.36
2408 2415 5.026121 TGATCTAGTCTTTCCACATGAGGT 58.974 41.667 9.16 0.00 0.00 3.85
2409 2416 5.604758 TGATCTAGTCTTTCCACATGAGG 57.395 43.478 2.20 2.20 0.00 3.86
2410 2417 6.580788 ACATGATCTAGTCTTTCCACATGAG 58.419 40.000 0.00 0.00 37.74 2.90
2411 2418 6.155049 TGACATGATCTAGTCTTTCCACATGA 59.845 38.462 15.73 0.00 37.74 3.07
2412 2419 6.257411 GTGACATGATCTAGTCTTTCCACATG 59.743 42.308 15.73 0.00 39.42 3.21
2413 2420 6.070596 TGTGACATGATCTAGTCTTTCCACAT 60.071 38.462 15.73 0.00 35.81 3.21
2414 2421 5.245977 TGTGACATGATCTAGTCTTTCCACA 59.754 40.000 15.73 10.59 35.81 4.17
2415 2422 5.724328 TGTGACATGATCTAGTCTTTCCAC 58.276 41.667 15.73 8.76 35.81 4.02
2416 2423 6.014242 AGTTGTGACATGATCTAGTCTTTCCA 60.014 38.462 15.73 7.48 35.81 3.53
2417 2424 6.312426 CAGTTGTGACATGATCTAGTCTTTCC 59.688 42.308 15.73 5.55 35.81 3.13
2418 2425 6.183360 GCAGTTGTGACATGATCTAGTCTTTC 60.183 42.308 15.73 9.13 35.81 2.62
2419 2426 5.641209 GCAGTTGTGACATGATCTAGTCTTT 59.359 40.000 15.73 0.14 35.81 2.52
2420 2427 5.174395 GCAGTTGTGACATGATCTAGTCTT 58.826 41.667 15.73 0.00 35.81 3.01
2421 2428 4.221482 TGCAGTTGTGACATGATCTAGTCT 59.779 41.667 15.73 0.00 35.81 3.24
2422 2429 4.498241 TGCAGTTGTGACATGATCTAGTC 58.502 43.478 0.00 10.10 35.37 2.59
2423 2430 4.541973 TGCAGTTGTGACATGATCTAGT 57.458 40.909 0.00 0.00 0.00 2.57
2424 2431 4.272748 CCATGCAGTTGTGACATGATCTAG 59.727 45.833 0.00 0.00 39.01 2.43
2425 2432 4.193865 CCATGCAGTTGTGACATGATCTA 58.806 43.478 0.00 0.00 39.01 1.98
2426 2433 3.014623 CCATGCAGTTGTGACATGATCT 58.985 45.455 0.00 0.00 39.01 2.75
2427 2434 2.098607 CCCATGCAGTTGTGACATGATC 59.901 50.000 0.00 0.00 39.01 2.92
2428 2435 2.097036 CCCATGCAGTTGTGACATGAT 58.903 47.619 0.00 0.00 39.01 2.45
2429 2436 1.536940 CCCATGCAGTTGTGACATGA 58.463 50.000 0.00 0.00 39.01 3.07
2430 2437 0.528924 CCCCATGCAGTTGTGACATG 59.471 55.000 0.00 0.00 37.67 3.21
2431 2438 0.612732 CCCCCATGCAGTTGTGACAT 60.613 55.000 0.00 0.00 0.00 3.06
2432 2439 1.228521 CCCCCATGCAGTTGTGACA 60.229 57.895 0.00 0.00 0.00 3.58
2433 2440 2.639327 GCCCCCATGCAGTTGTGAC 61.639 63.158 0.00 0.00 0.00 3.67
2434 2441 2.283101 GCCCCCATGCAGTTGTGA 60.283 61.111 0.00 0.00 0.00 3.58
2435 2442 3.384532 GGCCCCCATGCAGTTGTG 61.385 66.667 0.00 0.00 0.00 3.33
2436 2443 3.593680 AGGCCCCCATGCAGTTGT 61.594 61.111 0.00 0.00 0.00 3.32
2437 2444 3.072468 CAGGCCCCCATGCAGTTG 61.072 66.667 0.00 0.00 0.00 3.16
2440 2447 2.859525 TTTAGCAGGCCCCCATGCAG 62.860 60.000 16.24 0.00 45.01 4.41
2441 2448 2.452959 TTTTAGCAGGCCCCCATGCA 62.453 55.000 16.24 0.00 45.01 3.96
2442 2449 1.679559 CTTTTAGCAGGCCCCCATGC 61.680 60.000 6.59 6.59 42.87 4.06
2443 2450 1.044790 CCTTTTAGCAGGCCCCCATG 61.045 60.000 0.00 0.00 0.00 3.66
2444 2451 1.311059 CCTTTTAGCAGGCCCCCAT 59.689 57.895 0.00 0.00 0.00 4.00
2445 2452 2.770130 CCTTTTAGCAGGCCCCCA 59.230 61.111 0.00 0.00 0.00 4.96
2451 2458 0.449388 CGAGCAAGCCTTTTAGCAGG 59.551 55.000 0.00 0.00 36.95 4.85
2452 2459 1.442769 TCGAGCAAGCCTTTTAGCAG 58.557 50.000 0.00 0.00 34.23 4.24
2453 2460 1.806542 CTTCGAGCAAGCCTTTTAGCA 59.193 47.619 0.00 0.00 34.23 3.49
2454 2461 1.131315 CCTTCGAGCAAGCCTTTTAGC 59.869 52.381 0.00 0.00 0.00 3.09
2455 2462 1.131315 GCCTTCGAGCAAGCCTTTTAG 59.869 52.381 0.00 0.00 0.00 1.85
2456 2463 1.165270 GCCTTCGAGCAAGCCTTTTA 58.835 50.000 0.00 0.00 0.00 1.52
2457 2464 0.823356 TGCCTTCGAGCAAGCCTTTT 60.823 50.000 0.00 0.00 40.56 2.27
2458 2465 1.228245 TGCCTTCGAGCAAGCCTTT 60.228 52.632 0.00 0.00 40.56 3.11
2459 2466 1.968540 GTGCCTTCGAGCAAGCCTT 60.969 57.895 0.32 0.00 46.19 4.35
2460 2467 2.359230 GTGCCTTCGAGCAAGCCT 60.359 61.111 0.32 0.00 46.19 4.58
2461 2468 3.793144 CGTGCCTTCGAGCAAGCC 61.793 66.667 0.32 0.00 46.19 4.35
2462 2469 3.793144 CCGTGCCTTCGAGCAAGC 61.793 66.667 0.32 0.00 46.19 4.01
2463 2470 2.048222 TCCGTGCCTTCGAGCAAG 60.048 61.111 0.32 3.38 46.19 4.01
2464 2471 2.357034 GTCCGTGCCTTCGAGCAA 60.357 61.111 0.32 0.00 46.19 3.91
2465 2472 4.717629 CGTCCGTGCCTTCGAGCA 62.718 66.667 0.00 0.00 41.46 4.26
2478 2485 3.110178 CTTCGACAACGGGCGTCC 61.110 66.667 0.00 0.00 40.21 4.79
2479 2486 2.049802 TCTTCGACAACGGGCGTC 60.050 61.111 0.00 0.00 40.21 5.19
2480 2487 2.355481 GTCTTCGACAACGGGCGT 60.355 61.111 0.00 0.00 40.21 5.68
2481 2488 3.467119 CGTCTTCGACAACGGGCG 61.467 66.667 10.18 0.00 39.71 6.13
2485 2492 0.595567 TTCCACCGTCTTCGACAACG 60.596 55.000 10.90 10.90 39.71 4.10
2486 2493 1.137513 CTTCCACCGTCTTCGACAAC 58.862 55.000 0.00 0.00 39.71 3.32
2487 2494 0.748450 ACTTCCACCGTCTTCGACAA 59.252 50.000 0.00 0.00 39.71 3.18
2488 2495 0.313043 GACTTCCACCGTCTTCGACA 59.687 55.000 0.00 0.00 39.71 4.35
2489 2496 0.313043 TGACTTCCACCGTCTTCGAC 59.687 55.000 0.00 0.00 39.71 4.20
2490 2497 0.313043 GTGACTTCCACCGTCTTCGA 59.687 55.000 0.00 0.00 39.86 3.71
2491 2498 0.031585 TGTGACTTCCACCGTCTTCG 59.968 55.000 0.00 0.00 45.09 3.79
2492 2499 2.234300 TTGTGACTTCCACCGTCTTC 57.766 50.000 0.00 0.00 45.09 2.87
2493 2500 2.285977 GTTTGTGACTTCCACCGTCTT 58.714 47.619 0.00 0.00 45.09 3.01
2494 2501 1.805120 CGTTTGTGACTTCCACCGTCT 60.805 52.381 0.00 0.00 45.09 4.18
2495 2502 0.580104 CGTTTGTGACTTCCACCGTC 59.420 55.000 0.00 0.00 45.09 4.79
2496 2503 0.812412 CCGTTTGTGACTTCCACCGT 60.812 55.000 0.00 0.00 45.09 4.83
2497 2504 1.503818 CCCGTTTGTGACTTCCACCG 61.504 60.000 0.00 0.00 45.09 4.94
2498 2505 0.179040 TCCCGTTTGTGACTTCCACC 60.179 55.000 0.00 0.00 45.09 4.61
2499 2506 0.942252 GTCCCGTTTGTGACTTCCAC 59.058 55.000 0.00 0.00 45.88 4.02
2500 2507 0.542333 TGTCCCGTTTGTGACTTCCA 59.458 50.000 0.00 0.00 32.67 3.53
2501 2508 1.602377 CTTGTCCCGTTTGTGACTTCC 59.398 52.381 0.00 0.00 32.67 3.46
2502 2509 2.287103 GTCTTGTCCCGTTTGTGACTTC 59.713 50.000 0.00 0.00 32.67 3.01
2503 2510 2.285977 GTCTTGTCCCGTTTGTGACTT 58.714 47.619 0.00 0.00 32.67 3.01
2504 2511 1.208535 TGTCTTGTCCCGTTTGTGACT 59.791 47.619 0.00 0.00 32.67 3.41
2505 2512 1.658994 TGTCTTGTCCCGTTTGTGAC 58.341 50.000 0.00 0.00 0.00 3.67
2506 2513 2.011222 GTTGTCTTGTCCCGTTTGTGA 58.989 47.619 0.00 0.00 0.00 3.58
2507 2514 1.267832 CGTTGTCTTGTCCCGTTTGTG 60.268 52.381 0.00 0.00 0.00 3.33
2508 2515 1.011333 CGTTGTCTTGTCCCGTTTGT 58.989 50.000 0.00 0.00 0.00 2.83
2509 2516 0.306533 CCGTTGTCTTGTCCCGTTTG 59.693 55.000 0.00 0.00 0.00 2.93
2510 2517 0.816421 CCCGTTGTCTTGTCCCGTTT 60.816 55.000 0.00 0.00 0.00 3.60
2511 2518 1.227734 CCCGTTGTCTTGTCCCGTT 60.228 57.895 0.00 0.00 0.00 4.44
2512 2519 2.424302 CCCGTTGTCTTGTCCCGT 59.576 61.111 0.00 0.00 0.00 5.28
2513 2520 2.162338 TAGCCCGTTGTCTTGTCCCG 62.162 60.000 0.00 0.00 0.00 5.14
2514 2521 0.391263 CTAGCCCGTTGTCTTGTCCC 60.391 60.000 0.00 0.00 0.00 4.46
2515 2522 0.391263 CCTAGCCCGTTGTCTTGTCC 60.391 60.000 0.00 0.00 0.00 4.02
2516 2523 1.019805 GCCTAGCCCGTTGTCTTGTC 61.020 60.000 0.00 0.00 0.00 3.18
2517 2524 1.003718 GCCTAGCCCGTTGTCTTGT 60.004 57.895 0.00 0.00 0.00 3.16
2518 2525 1.003839 TGCCTAGCCCGTTGTCTTG 60.004 57.895 0.00 0.00 0.00 3.02
2519 2526 1.003718 GTGCCTAGCCCGTTGTCTT 60.004 57.895 0.00 0.00 0.00 3.01
2520 2527 2.663196 GTGCCTAGCCCGTTGTCT 59.337 61.111 0.00 0.00 0.00 3.41
2521 2528 2.436115 GGTGCCTAGCCCGTTGTC 60.436 66.667 0.00 0.00 0.00 3.18
2522 2529 4.029809 GGGTGCCTAGCCCGTTGT 62.030 66.667 0.00 0.00 38.56 3.32
2527 2534 4.442454 GGGTTGGGTGCCTAGCCC 62.442 72.222 10.45 10.45 43.97 5.19
2528 2535 4.442454 GGGGTTGGGTGCCTAGCC 62.442 72.222 0.00 0.00 43.99 3.93
2529 2536 4.442454 GGGGGTTGGGTGCCTAGC 62.442 72.222 0.00 0.00 0.00 3.42
2530 2537 2.614013 AGGGGGTTGGGTGCCTAG 60.614 66.667 0.00 0.00 0.00 3.02
2531 2538 1.828602 TAGAGGGGGTTGGGTGCCTA 61.829 60.000 0.00 0.00 0.00 3.93
2532 2539 3.202591 TAGAGGGGGTTGGGTGCCT 62.203 63.158 0.00 0.00 0.00 4.75
2533 2540 2.612746 TAGAGGGGGTTGGGTGCC 60.613 66.667 0.00 0.00 0.00 5.01
2534 2541 2.228480 TGTAGAGGGGGTTGGGTGC 61.228 63.158 0.00 0.00 0.00 5.01
2535 2542 0.840722 AGTGTAGAGGGGGTTGGGTG 60.841 60.000 0.00 0.00 0.00 4.61
2536 2543 0.794934 TAGTGTAGAGGGGGTTGGGT 59.205 55.000 0.00 0.00 0.00 4.51
2537 2544 2.191981 ATAGTGTAGAGGGGGTTGGG 57.808 55.000 0.00 0.00 0.00 4.12
2538 2545 3.240302 CCTATAGTGTAGAGGGGGTTGG 58.760 54.545 0.00 0.00 33.54 3.77
2539 2546 2.633481 GCCTATAGTGTAGAGGGGGTTG 59.367 54.545 0.00 0.00 37.64 3.77
2540 2547 2.755549 CGCCTATAGTGTAGAGGGGGTT 60.756 54.545 0.00 0.00 43.85 4.11
2541 2548 1.203025 CGCCTATAGTGTAGAGGGGGT 60.203 57.143 0.00 0.00 43.85 4.95
2542 2549 1.075050 TCGCCTATAGTGTAGAGGGGG 59.925 57.143 10.70 0.00 46.50 5.40
2544 2551 2.164624 GCATCGCCTATAGTGTAGAGGG 59.835 54.545 0.00 0.00 37.64 4.30
2545 2552 2.159503 CGCATCGCCTATAGTGTAGAGG 60.160 54.545 0.00 0.00 40.14 3.69
2546 2553 3.124316 CGCATCGCCTATAGTGTAGAG 57.876 52.381 0.00 0.00 0.00 2.43
2560 2567 2.806856 GCAGTCTCCTTGCGCATCG 61.807 63.158 12.75 5.44 0.00 3.84
2561 2568 2.467826 GGCAGTCTCCTTGCGCATC 61.468 63.158 12.75 0.00 42.42 3.91
2562 2569 2.437359 GGCAGTCTCCTTGCGCAT 60.437 61.111 12.75 0.00 42.42 4.73
2582 2589 4.148825 ATCGCAGTCCAGGTCGCC 62.149 66.667 0.00 0.00 0.00 5.54
2583 2590 2.583593 GATCGCAGTCCAGGTCGC 60.584 66.667 0.00 0.00 0.00 5.19
2584 2591 0.389817 TTTGATCGCAGTCCAGGTCG 60.390 55.000 0.00 0.00 0.00 4.79
2585 2592 1.464997 GTTTTGATCGCAGTCCAGGTC 59.535 52.381 0.00 0.00 0.00 3.85
2586 2593 1.523758 GTTTTGATCGCAGTCCAGGT 58.476 50.000 0.00 0.00 0.00 4.00
2587 2594 0.804989 GGTTTTGATCGCAGTCCAGG 59.195 55.000 0.00 0.00 0.00 4.45
2588 2595 1.522668 TGGTTTTGATCGCAGTCCAG 58.477 50.000 0.00 0.00 0.00 3.86
2589 2596 1.811965 CATGGTTTTGATCGCAGTCCA 59.188 47.619 0.00 0.00 0.00 4.02
2590 2597 1.812571 ACATGGTTTTGATCGCAGTCC 59.187 47.619 0.00 0.00 0.00 3.85
2591 2598 3.492313 GAACATGGTTTTGATCGCAGTC 58.508 45.455 0.00 0.00 0.00 3.51
2592 2599 2.095768 CGAACATGGTTTTGATCGCAGT 60.096 45.455 0.00 0.00 35.59 4.40
2593 2600 2.095768 ACGAACATGGTTTTGATCGCAG 60.096 45.455 0.00 0.00 43.26 5.18
2594 2601 1.876799 ACGAACATGGTTTTGATCGCA 59.123 42.857 0.00 0.00 43.26 5.10
2595 2602 2.241722 CACGAACATGGTTTTGATCGC 58.758 47.619 0.00 0.00 43.26 4.58
2596 2603 3.479006 GACACGAACATGGTTTTGATCG 58.521 45.455 0.00 3.10 44.49 3.69
2597 2604 3.502211 AGGACACGAACATGGTTTTGATC 59.498 43.478 0.00 0.00 0.00 2.92
2598 2605 3.486383 AGGACACGAACATGGTTTTGAT 58.514 40.909 0.00 0.00 0.00 2.57
2599 2606 2.925724 AGGACACGAACATGGTTTTGA 58.074 42.857 0.00 0.00 0.00 2.69
2600 2607 3.364964 GCTAGGACACGAACATGGTTTTG 60.365 47.826 0.00 0.00 0.00 2.44
2601 2608 2.812011 GCTAGGACACGAACATGGTTTT 59.188 45.455 0.00 0.00 0.00 2.43
2602 2609 2.423577 GCTAGGACACGAACATGGTTT 58.576 47.619 0.00 0.00 0.00 3.27
2603 2610 1.338769 GGCTAGGACACGAACATGGTT 60.339 52.381 0.00 0.00 0.00 3.67
2604 2611 0.249398 GGCTAGGACACGAACATGGT 59.751 55.000 0.00 0.00 0.00 3.55
2605 2612 0.249120 TGGCTAGGACACGAACATGG 59.751 55.000 0.00 0.00 0.00 3.66
2606 2613 1.359848 GTGGCTAGGACACGAACATG 58.640 55.000 0.00 0.00 29.47 3.21
2607 2614 3.834732 GTGGCTAGGACACGAACAT 57.165 52.632 0.00 0.00 29.47 2.71
2613 2620 0.736053 CGAGAGAGTGGCTAGGACAC 59.264 60.000 0.00 0.00 42.83 3.67
2614 2621 0.394488 CCGAGAGAGTGGCTAGGACA 60.394 60.000 0.00 0.00 30.65 4.02
2615 2622 0.107116 TCCGAGAGAGTGGCTAGGAC 60.107 60.000 0.00 0.00 33.09 3.85
2616 2623 0.847373 ATCCGAGAGAGTGGCTAGGA 59.153 55.000 0.00 0.00 40.63 2.94
2617 2624 1.698506 AATCCGAGAGAGTGGCTAGG 58.301 55.000 0.00 0.00 0.00 3.02
2618 2625 3.745799 TCTAATCCGAGAGAGTGGCTAG 58.254 50.000 0.00 0.00 0.00 3.42
2619 2626 3.859061 TCTAATCCGAGAGAGTGGCTA 57.141 47.619 0.00 0.00 0.00 3.93
2620 2627 2.738587 TCTAATCCGAGAGAGTGGCT 57.261 50.000 0.00 0.00 0.00 4.75
2621 2628 3.449632 GTTTCTAATCCGAGAGAGTGGC 58.550 50.000 0.00 0.00 0.00 5.01
2622 2629 3.702045 AGGTTTCTAATCCGAGAGAGTGG 59.298 47.826 0.00 0.00 0.00 4.00
2623 2630 4.399618 TCAGGTTTCTAATCCGAGAGAGTG 59.600 45.833 0.00 0.00 0.00 3.51
2624 2631 4.601084 TCAGGTTTCTAATCCGAGAGAGT 58.399 43.478 0.00 0.00 0.00 3.24
2625 2632 4.884744 TCTCAGGTTTCTAATCCGAGAGAG 59.115 45.833 11.03 0.00 36.06 3.20
2626 2633 4.856509 TCTCAGGTTTCTAATCCGAGAGA 58.143 43.478 11.03 11.03 37.40 3.10
2627 2634 4.642885 ACTCTCAGGTTTCTAATCCGAGAG 59.357 45.833 22.85 22.85 45.36 3.20
2628 2635 4.601084 ACTCTCAGGTTTCTAATCCGAGA 58.399 43.478 0.00 10.85 34.75 4.04
2629 2636 4.496673 CGACTCTCAGGTTTCTAATCCGAG 60.497 50.000 0.00 0.00 0.00 4.63
2630 2637 3.377485 CGACTCTCAGGTTTCTAATCCGA 59.623 47.826 0.00 0.00 0.00 4.55
2631 2638 3.696898 CGACTCTCAGGTTTCTAATCCG 58.303 50.000 0.00 0.00 0.00 4.18
2632 2639 3.131400 AGCGACTCTCAGGTTTCTAATCC 59.869 47.826 0.00 0.00 0.00 3.01
2633 2640 4.379339 AGCGACTCTCAGGTTTCTAATC 57.621 45.455 0.00 0.00 0.00 1.75
2634 2641 5.594725 TGATAGCGACTCTCAGGTTTCTAAT 59.405 40.000 0.00 0.00 0.00 1.73
2635 2642 4.948004 TGATAGCGACTCTCAGGTTTCTAA 59.052 41.667 0.00 0.00 0.00 2.10
2636 2643 4.335874 GTGATAGCGACTCTCAGGTTTCTA 59.664 45.833 0.00 0.00 0.00 2.10
2637 2644 3.129638 GTGATAGCGACTCTCAGGTTTCT 59.870 47.826 0.00 0.00 0.00 2.52
2638 2645 3.440228 GTGATAGCGACTCTCAGGTTTC 58.560 50.000 0.00 0.00 0.00 2.78
2639 2646 2.166664 GGTGATAGCGACTCTCAGGTTT 59.833 50.000 0.00 0.00 0.00 3.27
2640 2647 1.751924 GGTGATAGCGACTCTCAGGTT 59.248 52.381 0.00 0.00 0.00 3.50
2641 2648 1.341089 TGGTGATAGCGACTCTCAGGT 60.341 52.381 0.00 0.00 0.00 4.00
2642 2649 1.393603 TGGTGATAGCGACTCTCAGG 58.606 55.000 0.00 0.00 0.00 3.86
2643 2650 3.724508 ATTGGTGATAGCGACTCTCAG 57.275 47.619 0.00 0.00 0.00 3.35
2644 2651 4.569761 GTATTGGTGATAGCGACTCTCA 57.430 45.455 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.