Multiple sequence alignment - TraesCS3D01G013600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G013600 chr3D 100.000 3269 0 0 1 3269 4951922 4948654 0.000000e+00 6037
1 TraesCS3D01G013600 chr3D 94.680 1579 80 4 985 2559 4461181 4462759 0.000000e+00 2447
2 TraesCS3D01G013600 chr3D 87.194 1265 151 10 1047 2304 27652361 27653621 0.000000e+00 1428
3 TraesCS3D01G013600 chr3D 95.789 380 16 0 2557 2936 573446421 573446800 5.990000e-172 614
4 TraesCS3D01G013600 chr3D 95.503 378 17 0 2560 2937 572253181 572252804 3.610000e-169 604
5 TraesCS3D01G013600 chr3D 82.995 394 48 13 273 651 4460528 4460917 4.040000e-89 339
6 TraesCS3D01G013600 chr3A 94.559 1599 84 3 964 2559 10244996 10246594 0.000000e+00 2468
7 TraesCS3D01G013600 chr3A 93.506 1586 99 4 975 2556 10258057 10259642 0.000000e+00 2355
8 TraesCS3D01G013600 chr3A 92.443 1588 95 12 975 2559 10153550 10155115 0.000000e+00 2244
9 TraesCS3D01G013600 chr3A 86.228 1336 169 10 1047 2375 38021575 38020248 0.000000e+00 1434
10 TraesCS3D01G013600 chr3A 97.625 421 10 0 558 978 10508353 10507933 0.000000e+00 723
11 TraesCS3D01G013600 chr3A 93.584 452 22 3 1174 1625 10507084 10506640 0.000000e+00 667
12 TraesCS3D01G013600 chr3A 91.610 441 30 6 99 538 10510485 10510051 1.300000e-168 603
13 TraesCS3D01G013600 chr3A 96.716 335 6 2 2936 3269 10504154 10503824 1.330000e-153 553
14 TraesCS3D01G013600 chr3A 89.796 343 21 6 2936 3269 10246590 10246927 8.380000e-116 427
15 TraesCS3D01G013600 chr3A 84.343 396 50 5 655 1042 10239956 10240347 8.560000e-101 377
16 TraesCS3D01G013600 chr3A 82.005 389 53 12 273 651 10239604 10239985 6.810000e-82 315
17 TraesCS3D01G013600 chr3A 88.889 162 11 4 976 1130 10507247 10507086 3.330000e-45 193
18 TraesCS3D01G013600 chr3B 92.438 1600 116 3 964 2559 13764397 13765995 0.000000e+00 2279
19 TraesCS3D01G013600 chr3B 83.105 1243 192 13 1217 2450 188493374 188494607 0.000000e+00 1116
20 TraesCS3D01G013600 chr3B 83.105 1243 191 13 1217 2450 188465306 188466538 0.000000e+00 1114
21 TraesCS3D01G013600 chr3B 96.286 377 14 0 2560 2936 732271251 732271627 1.290000e-173 619
22 TraesCS3D01G013600 chr3B 87.576 491 46 6 162 651 13755526 13756002 3.690000e-154 555
23 TraesCS3D01G013600 chr3B 85.488 379 46 5 662 1037 13755981 13756353 1.420000e-103 387
24 TraesCS3D01G013600 chr3B 83.019 159 15 5 162 320 13761235 13761381 2.050000e-27 134
25 TraesCS3D01G013600 chr3B 84.962 133 14 1 717 843 13764198 13764330 2.650000e-26 130
26 TraesCS3D01G013600 chr3B 77.727 220 39 8 2233 2450 188451092 188451303 3.420000e-25 126
27 TraesCS3D01G013600 chrUn 93.157 1549 97 4 1017 2560 34574624 34576168 0.000000e+00 2265
28 TraesCS3D01G013600 chrUn 93.603 1360 84 1 1003 2359 35690568 35689209 0.000000e+00 2026
29 TraesCS3D01G013600 chrUn 81.900 442 49 15 662 1099 35690976 35690562 8.680000e-91 344
30 TraesCS3D01G013600 chrUn 88.318 214 22 2 671 881 34574125 34574338 1.510000e-63 254
31 TraesCS3D01G013600 chr5B 96.296 378 13 1 2559 2936 522854146 522853770 1.290000e-173 619
32 TraesCS3D01G013600 chr4A 96.021 377 14 1 2560 2935 743027981 743028357 2.160000e-171 612
33 TraesCS3D01G013600 chr4A 95.756 377 15 1 2560 2935 743004873 743005249 1.000000e-169 606
34 TraesCS3D01G013600 chr1B 96.011 376 14 1 2560 2935 4080057 4080431 7.750000e-171 610
35 TraesCS3D01G013600 chr6B 95.745 376 16 0 2560 2935 562317748 562317373 1.000000e-169 606
36 TraesCS3D01G013600 chr1A 95.745 376 16 0 2560 2935 588259848 588259473 1.000000e-169 606


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G013600 chr3D 4948654 4951922 3268 True 6037.000000 6037 100.000000 1 3269 1 chr3D.!!$R1 3268
1 TraesCS3D01G013600 chr3D 27652361 27653621 1260 False 1428.000000 1428 87.194000 1047 2304 1 chr3D.!!$F1 1257
2 TraesCS3D01G013600 chr3D 4460528 4462759 2231 False 1393.000000 2447 88.837500 273 2559 2 chr3D.!!$F3 2286
3 TraesCS3D01G013600 chr3A 10258057 10259642 1585 False 2355.000000 2355 93.506000 975 2556 1 chr3A.!!$F2 1581
4 TraesCS3D01G013600 chr3A 10153550 10155115 1565 False 2244.000000 2244 92.443000 975 2559 1 chr3A.!!$F1 1584
5 TraesCS3D01G013600 chr3A 10244996 10246927 1931 False 1447.500000 2468 92.177500 964 3269 2 chr3A.!!$F4 2305
6 TraesCS3D01G013600 chr3A 38020248 38021575 1327 True 1434.000000 1434 86.228000 1047 2375 1 chr3A.!!$R1 1328
7 TraesCS3D01G013600 chr3A 10503824 10510485 6661 True 547.800000 723 93.684800 99 3269 5 chr3A.!!$R2 3170
8 TraesCS3D01G013600 chr3A 10239604 10240347 743 False 346.000000 377 83.174000 273 1042 2 chr3A.!!$F3 769
9 TraesCS3D01G013600 chr3B 188493374 188494607 1233 False 1116.000000 1116 83.105000 1217 2450 1 chr3B.!!$F3 1233
10 TraesCS3D01G013600 chr3B 188465306 188466538 1232 False 1114.000000 1114 83.105000 1217 2450 1 chr3B.!!$F2 1233
11 TraesCS3D01G013600 chr3B 13761235 13765995 4760 False 847.666667 2279 86.806333 162 2559 3 chr3B.!!$F6 2397
12 TraesCS3D01G013600 chr3B 13755526 13756353 827 False 471.000000 555 86.532000 162 1037 2 chr3B.!!$F5 875
13 TraesCS3D01G013600 chrUn 34574125 34576168 2043 False 1259.500000 2265 90.737500 671 2560 2 chrUn.!!$F1 1889
14 TraesCS3D01G013600 chrUn 35689209 35690976 1767 True 1185.000000 2026 87.751500 662 2359 2 chrUn.!!$R1 1697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 1.620323 TCACTGTACATCACTGCTGCT 59.380 47.619 0.0 0.00 0.00 4.24 F
1280 6400 1.003696 AGAGTTTGGGGAGCTACAAGC 59.996 52.381 0.0 1.07 42.84 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 6722 1.750399 CGTGCTCCAATTCAGGGGG 60.750 63.158 0.0 0.0 0.0 5.40 R
2859 9545 0.033504 AGCACGACACCGAGATTTGT 59.966 50.000 0.0 0.0 39.5 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.145876 TCTTGCAAAGCGTTATTCACTG 57.854 40.909 0.00 0.00 45.70 3.66
22 23 3.563808 TCTTGCAAAGCGTTATTCACTGT 59.436 39.130 0.00 0.00 45.70 3.55
23 24 4.752604 TCTTGCAAAGCGTTATTCACTGTA 59.247 37.500 0.00 0.00 45.70 2.74
24 25 4.398549 TGCAAAGCGTTATTCACTGTAC 57.601 40.909 0.00 0.00 0.00 2.90
25 26 3.810386 TGCAAAGCGTTATTCACTGTACA 59.190 39.130 0.00 0.00 0.00 2.90
26 27 4.454161 TGCAAAGCGTTATTCACTGTACAT 59.546 37.500 0.00 0.00 0.00 2.29
27 28 5.022021 GCAAAGCGTTATTCACTGTACATC 58.978 41.667 0.00 0.00 0.00 3.06
28 29 5.390461 GCAAAGCGTTATTCACTGTACATCA 60.390 40.000 0.00 0.00 0.00 3.07
29 30 5.779806 AAGCGTTATTCACTGTACATCAC 57.220 39.130 0.00 0.00 0.00 3.06
30 31 5.073311 AGCGTTATTCACTGTACATCACT 57.927 39.130 0.00 0.00 0.00 3.41
31 32 4.864806 AGCGTTATTCACTGTACATCACTG 59.135 41.667 0.00 0.00 0.00 3.66
32 33 4.492570 GCGTTATTCACTGTACATCACTGC 60.493 45.833 0.00 0.00 0.00 4.40
33 34 4.864806 CGTTATTCACTGTACATCACTGCT 59.135 41.667 0.00 0.00 0.00 4.24
34 35 5.220284 CGTTATTCACTGTACATCACTGCTG 60.220 44.000 0.00 0.00 0.00 4.41
35 36 2.084610 TCACTGTACATCACTGCTGC 57.915 50.000 0.00 0.00 0.00 5.25
36 37 1.620323 TCACTGTACATCACTGCTGCT 59.380 47.619 0.00 0.00 0.00 4.24
37 38 2.825532 TCACTGTACATCACTGCTGCTA 59.174 45.455 0.00 0.00 0.00 3.49
38 39 3.258123 TCACTGTACATCACTGCTGCTAA 59.742 43.478 0.00 0.00 0.00 3.09
39 40 3.369147 CACTGTACATCACTGCTGCTAAC 59.631 47.826 0.00 0.00 0.00 2.34
40 41 3.259374 ACTGTACATCACTGCTGCTAACT 59.741 43.478 0.00 0.00 0.00 2.24
41 42 3.849911 TGTACATCACTGCTGCTAACTC 58.150 45.455 0.00 0.00 0.00 3.01
42 43 3.258123 TGTACATCACTGCTGCTAACTCA 59.742 43.478 0.00 0.00 0.00 3.41
43 44 3.407424 ACATCACTGCTGCTAACTCAA 57.593 42.857 0.00 0.00 0.00 3.02
44 45 3.332919 ACATCACTGCTGCTAACTCAAG 58.667 45.455 0.00 0.00 0.00 3.02
45 46 3.007290 ACATCACTGCTGCTAACTCAAGA 59.993 43.478 0.00 0.00 0.00 3.02
46 47 3.969287 TCACTGCTGCTAACTCAAGAT 57.031 42.857 0.00 0.00 0.00 2.40
47 48 4.277515 TCACTGCTGCTAACTCAAGATT 57.722 40.909 0.00 0.00 0.00 2.40
48 49 4.248859 TCACTGCTGCTAACTCAAGATTC 58.751 43.478 0.00 0.00 0.00 2.52
49 50 4.020751 TCACTGCTGCTAACTCAAGATTCT 60.021 41.667 0.00 0.00 0.00 2.40
50 51 4.093115 CACTGCTGCTAACTCAAGATTCTG 59.907 45.833 0.00 0.00 0.00 3.02
51 52 3.603532 TGCTGCTAACTCAAGATTCTGG 58.396 45.455 0.00 0.00 0.00 3.86
52 53 3.261643 TGCTGCTAACTCAAGATTCTGGA 59.738 43.478 0.00 0.00 0.00 3.86
53 54 4.080695 TGCTGCTAACTCAAGATTCTGGAT 60.081 41.667 0.00 0.00 0.00 3.41
54 55 4.511082 GCTGCTAACTCAAGATTCTGGATC 59.489 45.833 0.00 0.00 34.83 3.36
56 57 6.462207 GCTGCTAACTCAAGATTCTGGATCTA 60.462 42.308 0.00 0.00 44.41 1.98
57 58 7.423844 TGCTAACTCAAGATTCTGGATCTAA 57.576 36.000 0.00 0.00 44.41 2.10
58 59 7.851228 TGCTAACTCAAGATTCTGGATCTAAA 58.149 34.615 0.00 0.00 44.41 1.85
59 60 7.984050 TGCTAACTCAAGATTCTGGATCTAAAG 59.016 37.037 0.00 2.81 44.41 1.85
60 61 7.984617 GCTAACTCAAGATTCTGGATCTAAAGT 59.015 37.037 0.00 3.42 44.41 2.66
61 62 9.311916 CTAACTCAAGATTCTGGATCTAAAGTG 57.688 37.037 11.76 2.52 44.41 3.16
62 63 7.251321 ACTCAAGATTCTGGATCTAAAGTGT 57.749 36.000 10.71 4.49 44.41 3.55
63 64 7.684529 ACTCAAGATTCTGGATCTAAAGTGTT 58.315 34.615 10.71 0.00 44.41 3.32
64 65 7.605691 ACTCAAGATTCTGGATCTAAAGTGTTG 59.394 37.037 10.71 0.37 44.41 3.33
65 66 6.372659 TCAAGATTCTGGATCTAAAGTGTTGC 59.627 38.462 0.00 0.00 44.41 4.17
66 67 5.809001 AGATTCTGGATCTAAAGTGTTGCA 58.191 37.500 0.00 0.00 43.35 4.08
67 68 6.240894 AGATTCTGGATCTAAAGTGTTGCAA 58.759 36.000 0.00 0.00 43.35 4.08
68 69 5.689383 TTCTGGATCTAAAGTGTTGCAAC 57.311 39.130 22.83 22.83 0.00 4.17
69 70 4.713553 TCTGGATCTAAAGTGTTGCAACA 58.286 39.130 27.96 27.96 36.38 3.33
70 71 5.129634 TCTGGATCTAAAGTGTTGCAACAA 58.870 37.500 32.61 17.28 41.21 2.83
71 72 5.592282 TCTGGATCTAAAGTGTTGCAACAAA 59.408 36.000 32.61 17.30 41.21 2.83
72 73 5.830912 TGGATCTAAAGTGTTGCAACAAAG 58.169 37.500 32.61 24.45 41.21 2.77
73 74 4.681483 GGATCTAAAGTGTTGCAACAAAGC 59.319 41.667 32.61 20.58 41.21 3.51
74 75 4.710423 TCTAAAGTGTTGCAACAAAGCA 57.290 36.364 32.61 17.33 41.21 3.91
75 76 5.261209 TCTAAAGTGTTGCAACAAAGCAT 57.739 34.783 32.61 18.88 45.19 3.79
76 77 6.384258 TCTAAAGTGTTGCAACAAAGCATA 57.616 33.333 32.61 18.97 45.19 3.14
77 78 6.205784 TCTAAAGTGTTGCAACAAAGCATAC 58.794 36.000 32.61 18.44 45.19 2.39
78 79 2.998772 AGTGTTGCAACAAAGCATACG 58.001 42.857 32.61 0.00 45.19 3.06
79 80 2.616376 AGTGTTGCAACAAAGCATACGA 59.384 40.909 32.61 4.24 45.19 3.43
80 81 2.719046 GTGTTGCAACAAAGCATACGAC 59.281 45.455 32.61 13.20 45.19 4.34
81 82 2.356069 TGTTGCAACAAAGCATACGACA 59.644 40.909 29.36 2.01 45.19 4.35
82 83 2.967459 TGCAACAAAGCATACGACAG 57.033 45.000 0.00 0.00 40.11 3.51
83 84 2.488952 TGCAACAAAGCATACGACAGA 58.511 42.857 0.00 0.00 40.11 3.41
84 85 3.073678 TGCAACAAAGCATACGACAGAT 58.926 40.909 0.00 0.00 40.11 2.90
85 86 3.125146 TGCAACAAAGCATACGACAGATC 59.875 43.478 0.00 0.00 40.11 2.75
86 87 6.185172 TGCAACAAAGCATACGACAGATCG 62.185 45.833 0.00 0.00 46.37 3.69
112 113 3.644966 ATGAACAAATTAGGAGCCGGA 57.355 42.857 5.05 0.00 0.00 5.14
125 126 5.104259 AGGAGCCGGATTCCATTATAATC 57.896 43.478 22.83 0.00 37.18 1.75
133 134 7.045416 CCGGATTCCATTATAATCATAACGGA 58.955 38.462 14.17 6.91 37.24 4.69
140 141 9.435688 TCCATTATAATCATAACGGAACAGATG 57.564 33.333 0.00 0.00 36.34 2.90
203 204 6.901300 TGGGATTAAATACTCAGTCTACCACT 59.099 38.462 0.00 0.00 34.67 4.00
204 205 8.063153 TGGGATTAAATACTCAGTCTACCACTA 58.937 37.037 0.00 0.00 32.21 2.74
327 340 7.615582 TGAGATACATTAACAAGCAGGAAAG 57.384 36.000 0.00 0.00 0.00 2.62
353 2831 2.540383 AGGCTCTGACATACACAAGGA 58.460 47.619 0.00 0.00 0.00 3.36
394 2872 7.631933 TCCCAAGATGATATTTTGCCAAAAAT 58.368 30.769 6.70 5.71 45.70 1.82
401 2883 9.925268 GATGATATTTTGCCAAAAATCATGTTC 57.075 29.630 26.75 17.92 43.41 3.18
465 2955 3.304123 CCGTGTTTGCCGATTTCTTACAA 60.304 43.478 0.00 0.00 0.00 2.41
499 2993 3.526931 ACAACGCACTATACAGATGCT 57.473 42.857 0.00 0.00 37.20 3.79
580 4752 6.715464 CAAACAAGTCGACAAGAATGTTAGT 58.285 36.000 19.50 4.40 40.74 2.24
654 4826 2.036604 GCAATCTCCTACCACTCTAGGC 59.963 54.545 0.00 0.00 34.25 3.93
981 5864 6.037172 GTGCTACGATCAACCAAACAATATCT 59.963 38.462 0.00 0.00 0.00 1.98
1057 6168 1.993956 AAGTATTGTGCCTGCACCAA 58.006 45.000 18.80 13.11 45.63 3.67
1138 6249 6.715280 AGCATGAAAGTGAAATCCTCTTCTA 58.285 36.000 0.00 0.00 0.00 2.10
1181 6292 1.153549 CTCCTGTAGGCGGCTTCAC 60.154 63.158 19.76 11.33 34.44 3.18
1280 6400 1.003696 AGAGTTTGGGGAGCTACAAGC 59.996 52.381 0.00 1.07 42.84 4.01
1602 6722 3.270027 TCGACATGACAATGATTCACCC 58.730 45.455 0.00 0.00 37.24 4.61
1656 8330 3.327757 TCACTCACATAGCAAAGGGTCTT 59.672 43.478 0.00 0.00 0.00 3.01
1972 8647 3.301794 TCCATCTCATCACCCAATTGG 57.698 47.619 18.21 18.21 41.37 3.16
2139 8816 2.164624 CGAGGTAGTCAAGGTCTTGGAG 59.835 54.545 10.39 0.00 40.78 3.86
2561 9247 9.120538 AGTCATTGTAGTTGAAATTAACAGTGT 57.879 29.630 0.00 0.00 33.02 3.55
2562 9248 9.730420 GTCATTGTAGTTGAAATTAACAGTGTT 57.270 29.630 14.05 14.05 33.02 3.32
2563 9249 9.729023 TCATTGTAGTTGAAATTAACAGTGTTG 57.271 29.630 18.90 0.00 33.02 3.33
2564 9250 8.967218 CATTGTAGTTGAAATTAACAGTGTTGG 58.033 33.333 18.90 0.00 33.02 3.77
2565 9251 7.867305 TGTAGTTGAAATTAACAGTGTTGGA 57.133 32.000 18.90 7.51 33.02 3.53
2566 9252 7.925993 TGTAGTTGAAATTAACAGTGTTGGAG 58.074 34.615 18.90 0.00 33.02 3.86
2567 9253 7.554835 TGTAGTTGAAATTAACAGTGTTGGAGT 59.445 33.333 18.90 3.70 33.02 3.85
2568 9254 7.404671 AGTTGAAATTAACAGTGTTGGAGTT 57.595 32.000 18.90 11.89 33.02 3.01
2569 9255 7.257722 AGTTGAAATTAACAGTGTTGGAGTTG 58.742 34.615 18.90 0.00 33.02 3.16
2570 9256 6.767524 TGAAATTAACAGTGTTGGAGTTGT 57.232 33.333 18.90 0.00 0.00 3.32
2571 9257 6.559810 TGAAATTAACAGTGTTGGAGTTGTG 58.440 36.000 18.90 0.00 0.00 3.33
2572 9258 6.151985 TGAAATTAACAGTGTTGGAGTTGTGT 59.848 34.615 18.90 0.00 0.00 3.72
2573 9259 5.751243 ATTAACAGTGTTGGAGTTGTGTC 57.249 39.130 18.90 0.00 0.00 3.67
2574 9260 1.651987 ACAGTGTTGGAGTTGTGTCG 58.348 50.000 0.00 0.00 0.00 4.35
2575 9261 1.206132 ACAGTGTTGGAGTTGTGTCGA 59.794 47.619 0.00 0.00 0.00 4.20
2576 9262 2.276201 CAGTGTTGGAGTTGTGTCGAA 58.724 47.619 0.00 0.00 0.00 3.71
2577 9263 2.872245 CAGTGTTGGAGTTGTGTCGAAT 59.128 45.455 0.00 0.00 0.00 3.34
2578 9264 4.055360 CAGTGTTGGAGTTGTGTCGAATA 58.945 43.478 0.00 0.00 0.00 1.75
2579 9265 4.690748 CAGTGTTGGAGTTGTGTCGAATAT 59.309 41.667 0.00 0.00 0.00 1.28
2580 9266 5.179368 CAGTGTTGGAGTTGTGTCGAATATT 59.821 40.000 0.00 0.00 0.00 1.28
2581 9267 5.179368 AGTGTTGGAGTTGTGTCGAATATTG 59.821 40.000 0.00 0.00 0.00 1.90
2582 9268 5.049680 GTGTTGGAGTTGTGTCGAATATTGT 60.050 40.000 0.00 0.00 0.00 2.71
2583 9269 5.049749 TGTTGGAGTTGTGTCGAATATTGTG 60.050 40.000 0.00 0.00 0.00 3.33
2584 9270 4.637276 TGGAGTTGTGTCGAATATTGTGT 58.363 39.130 0.00 0.00 0.00 3.72
2585 9271 5.785243 TGGAGTTGTGTCGAATATTGTGTA 58.215 37.500 0.00 0.00 0.00 2.90
2586 9272 5.636121 TGGAGTTGTGTCGAATATTGTGTAC 59.364 40.000 0.00 0.00 0.00 2.90
2587 9273 5.636121 GGAGTTGTGTCGAATATTGTGTACA 59.364 40.000 0.00 0.00 0.00 2.90
2588 9274 6.146510 GGAGTTGTGTCGAATATTGTGTACAA 59.853 38.462 0.00 0.00 40.51 2.41
2589 9275 7.117241 AGTTGTGTCGAATATTGTGTACAAG 57.883 36.000 0.00 0.00 39.47 3.16
2590 9276 6.147164 AGTTGTGTCGAATATTGTGTACAAGG 59.853 38.462 0.00 0.00 39.47 3.61
2591 9277 5.543714 TGTGTCGAATATTGTGTACAAGGT 58.456 37.500 0.00 0.00 39.47 3.50
2592 9278 6.689554 TGTGTCGAATATTGTGTACAAGGTA 58.310 36.000 0.00 0.00 39.47 3.08
2593 9279 6.809689 TGTGTCGAATATTGTGTACAAGGTAG 59.190 38.462 0.00 0.00 39.47 3.18
2594 9280 6.255020 GTGTCGAATATTGTGTACAAGGTAGG 59.745 42.308 0.00 0.00 39.47 3.18
2595 9281 6.071221 TGTCGAATATTGTGTACAAGGTAGGT 60.071 38.462 0.00 0.00 39.47 3.08
2596 9282 6.815142 GTCGAATATTGTGTACAAGGTAGGTT 59.185 38.462 0.00 0.00 39.47 3.50
2597 9283 7.975616 GTCGAATATTGTGTACAAGGTAGGTTA 59.024 37.037 0.00 0.00 39.47 2.85
2598 9284 7.975616 TCGAATATTGTGTACAAGGTAGGTTAC 59.024 37.037 0.00 0.00 39.47 2.50
2599 9285 7.760794 CGAATATTGTGTACAAGGTAGGTTACA 59.239 37.037 0.00 0.00 39.47 2.41
2600 9286 9.095065 GAATATTGTGTACAAGGTAGGTTACAG 57.905 37.037 0.00 0.00 39.47 2.74
2601 9287 5.874897 TTGTGTACAAGGTAGGTTACAGT 57.125 39.130 0.00 0.00 0.00 3.55
2602 9288 5.874897 TGTGTACAAGGTAGGTTACAGTT 57.125 39.130 0.00 0.00 0.00 3.16
2603 9289 5.603596 TGTGTACAAGGTAGGTTACAGTTG 58.396 41.667 0.00 0.00 33.08 3.16
2604 9290 4.992951 GTGTACAAGGTAGGTTACAGTTGG 59.007 45.833 0.00 0.00 31.85 3.77
2605 9291 3.782656 ACAAGGTAGGTTACAGTTGGG 57.217 47.619 0.00 0.00 31.85 4.12
2606 9292 2.224695 ACAAGGTAGGTTACAGTTGGGC 60.225 50.000 0.00 0.00 31.85 5.36
2607 9293 2.039879 CAAGGTAGGTTACAGTTGGGCT 59.960 50.000 0.00 0.00 0.00 5.19
2608 9294 2.345560 AGGTAGGTTACAGTTGGGCTT 58.654 47.619 0.00 0.00 0.00 4.35
2609 9295 2.039879 AGGTAGGTTACAGTTGGGCTTG 59.960 50.000 0.00 0.00 0.00 4.01
2610 9296 2.224695 GGTAGGTTACAGTTGGGCTTGT 60.225 50.000 0.00 0.00 0.00 3.16
2611 9297 3.008266 GGTAGGTTACAGTTGGGCTTGTA 59.992 47.826 0.00 0.00 0.00 2.41
2612 9298 3.418684 AGGTTACAGTTGGGCTTGTAG 57.581 47.619 0.00 0.00 0.00 2.74
2613 9299 2.709397 AGGTTACAGTTGGGCTTGTAGT 59.291 45.455 0.00 0.00 0.00 2.73
2614 9300 3.137728 AGGTTACAGTTGGGCTTGTAGTT 59.862 43.478 0.00 0.00 0.00 2.24
2615 9301 3.252458 GGTTACAGTTGGGCTTGTAGTTG 59.748 47.826 0.00 0.00 0.00 3.16
2616 9302 2.729028 ACAGTTGGGCTTGTAGTTGT 57.271 45.000 0.00 0.00 0.00 3.32
2617 9303 3.849563 ACAGTTGGGCTTGTAGTTGTA 57.150 42.857 0.00 0.00 0.00 2.41
2618 9304 4.367039 ACAGTTGGGCTTGTAGTTGTAT 57.633 40.909 0.00 0.00 0.00 2.29
2619 9305 4.725490 ACAGTTGGGCTTGTAGTTGTATT 58.275 39.130 0.00 0.00 0.00 1.89
2620 9306 4.518970 ACAGTTGGGCTTGTAGTTGTATTG 59.481 41.667 0.00 0.00 0.00 1.90
2621 9307 4.518970 CAGTTGGGCTTGTAGTTGTATTGT 59.481 41.667 0.00 0.00 0.00 2.71
2622 9308 4.518970 AGTTGGGCTTGTAGTTGTATTGTG 59.481 41.667 0.00 0.00 0.00 3.33
2623 9309 4.093472 TGGGCTTGTAGTTGTATTGTGT 57.907 40.909 0.00 0.00 0.00 3.72
2624 9310 4.465886 TGGGCTTGTAGTTGTATTGTGTT 58.534 39.130 0.00 0.00 0.00 3.32
2625 9311 4.890581 TGGGCTTGTAGTTGTATTGTGTTT 59.109 37.500 0.00 0.00 0.00 2.83
2626 9312 6.062749 TGGGCTTGTAGTTGTATTGTGTTTA 58.937 36.000 0.00 0.00 0.00 2.01
2627 9313 6.205853 TGGGCTTGTAGTTGTATTGTGTTTAG 59.794 38.462 0.00 0.00 0.00 1.85
2628 9314 6.428771 GGGCTTGTAGTTGTATTGTGTTTAGA 59.571 38.462 0.00 0.00 0.00 2.10
2629 9315 7.120726 GGGCTTGTAGTTGTATTGTGTTTAGAT 59.879 37.037 0.00 0.00 0.00 1.98
2630 9316 9.158233 GGCTTGTAGTTGTATTGTGTTTAGATA 57.842 33.333 0.00 0.00 0.00 1.98
2643 9329 7.215719 TGTGTTTAGATAGGATATGGAGTCG 57.784 40.000 0.00 0.00 0.00 4.18
2644 9330 6.776116 TGTGTTTAGATAGGATATGGAGTCGT 59.224 38.462 0.00 0.00 0.00 4.34
2645 9331 7.085116 GTGTTTAGATAGGATATGGAGTCGTG 58.915 42.308 0.00 0.00 0.00 4.35
2646 9332 6.776116 TGTTTAGATAGGATATGGAGTCGTGT 59.224 38.462 0.00 0.00 0.00 4.49
2647 9333 7.040617 TGTTTAGATAGGATATGGAGTCGTGTC 60.041 40.741 0.00 0.00 0.00 3.67
2648 9334 4.337145 AGATAGGATATGGAGTCGTGTCC 58.663 47.826 2.82 2.82 39.58 4.02
2656 9342 2.531771 TGGAGTCGTGTCCAATTAGGA 58.468 47.619 6.09 0.00 44.01 2.94
2670 9356 7.361457 TCCAATTAGGACACTTGTATCCTAG 57.639 40.000 7.71 0.00 46.03 3.02
2671 9357 7.130099 TCCAATTAGGACACTTGTATCCTAGA 58.870 38.462 7.71 0.68 46.03 2.43
2672 9358 7.069578 TCCAATTAGGACACTTGTATCCTAGAC 59.930 40.741 7.71 0.00 46.03 2.59
2673 9359 6.980416 ATTAGGACACTTGTATCCTAGACC 57.020 41.667 7.71 0.00 46.03 3.85
2674 9360 4.611564 AGGACACTTGTATCCTAGACCT 57.388 45.455 0.00 0.00 43.85 3.85
2675 9361 4.538738 AGGACACTTGTATCCTAGACCTC 58.461 47.826 0.00 0.00 43.85 3.85
2676 9362 4.230964 AGGACACTTGTATCCTAGACCTCT 59.769 45.833 0.00 0.00 43.85 3.69
2677 9363 4.581409 GGACACTTGTATCCTAGACCTCTC 59.419 50.000 0.00 0.00 31.75 3.20
2678 9364 5.194432 GACACTTGTATCCTAGACCTCTCA 58.806 45.833 0.00 0.00 0.00 3.27
2679 9365 5.772004 ACACTTGTATCCTAGACCTCTCAT 58.228 41.667 0.00 0.00 0.00 2.90
2680 9366 6.912426 ACACTTGTATCCTAGACCTCTCATA 58.088 40.000 0.00 0.00 0.00 2.15
2681 9367 7.531317 ACACTTGTATCCTAGACCTCTCATAT 58.469 38.462 0.00 0.00 0.00 1.78
2682 9368 8.670490 ACACTTGTATCCTAGACCTCTCATATA 58.330 37.037 0.00 0.00 0.00 0.86
2683 9369 9.693739 CACTTGTATCCTAGACCTCTCATATAT 57.306 37.037 0.00 0.00 0.00 0.86
2686 9372 9.854668 TTGTATCCTAGACCTCTCATATATAGC 57.145 37.037 0.00 0.00 0.00 2.97
2687 9373 8.151596 TGTATCCTAGACCTCTCATATATAGCG 58.848 40.741 0.00 0.00 0.00 4.26
2688 9374 5.931294 TCCTAGACCTCTCATATATAGCGG 58.069 45.833 0.00 0.00 0.00 5.52
2689 9375 5.067273 CCTAGACCTCTCATATATAGCGGG 58.933 50.000 0.00 0.00 0.00 6.13
2690 9376 3.904717 AGACCTCTCATATATAGCGGGG 58.095 50.000 0.00 0.00 0.00 5.73
2691 9377 2.959707 GACCTCTCATATATAGCGGGGG 59.040 54.545 0.00 0.00 0.00 5.40
2692 9378 2.315155 ACCTCTCATATATAGCGGGGGT 59.685 50.000 0.00 0.00 0.00 4.95
2693 9379 3.530564 ACCTCTCATATATAGCGGGGGTA 59.469 47.826 2.50 0.00 0.00 3.69
2694 9380 4.145807 CCTCTCATATATAGCGGGGGTAG 58.854 52.174 0.00 0.00 0.00 3.18
2695 9381 4.141228 CCTCTCATATATAGCGGGGGTAGA 60.141 50.000 0.00 0.00 0.00 2.59
2696 9382 4.789807 TCTCATATATAGCGGGGGTAGAC 58.210 47.826 0.00 0.00 0.00 2.59
2697 9383 4.228895 TCTCATATATAGCGGGGGTAGACA 59.771 45.833 0.00 0.00 0.00 3.41
2698 9384 4.275810 TCATATATAGCGGGGGTAGACAC 58.724 47.826 0.00 0.00 0.00 3.67
2699 9385 2.688902 ATATAGCGGGGGTAGACACA 57.311 50.000 0.00 0.00 0.00 3.72
2700 9386 1.696063 TATAGCGGGGGTAGACACAC 58.304 55.000 0.00 0.00 0.00 3.82
2701 9387 1.389609 ATAGCGGGGGTAGACACACG 61.390 60.000 1.20 1.20 0.00 4.49
2702 9388 2.482796 TAGCGGGGGTAGACACACGA 62.483 60.000 11.49 0.00 0.00 4.35
2703 9389 2.718073 GCGGGGGTAGACACACGAT 61.718 63.158 11.49 0.00 0.00 3.73
2704 9390 1.141019 CGGGGGTAGACACACGATG 59.859 63.158 0.00 0.00 0.00 3.84
2706 9392 1.477553 GGGGGTAGACACACGATGTA 58.522 55.000 0.00 0.00 43.56 2.29
2707 9393 1.826720 GGGGGTAGACACACGATGTAA 59.173 52.381 0.00 0.00 43.56 2.41
2708 9394 2.417787 GGGGGTAGACACACGATGTAAC 60.418 54.545 0.00 0.00 43.56 2.50
2709 9395 2.417787 GGGGTAGACACACGATGTAACC 60.418 54.545 14.65 14.65 43.56 2.85
2710 9396 2.494870 GGGTAGACACACGATGTAACCT 59.505 50.000 18.81 8.15 43.56 3.50
2711 9397 3.696051 GGGTAGACACACGATGTAACCTA 59.304 47.826 18.81 7.47 43.56 3.08
2712 9398 4.340381 GGGTAGACACACGATGTAACCTAT 59.660 45.833 18.81 0.00 43.56 2.57
2713 9399 5.279384 GGTAGACACACGATGTAACCTATG 58.721 45.833 15.25 0.00 43.56 2.23
2714 9400 3.782046 AGACACACGATGTAACCTATGC 58.218 45.455 0.00 0.00 43.56 3.14
2715 9401 2.864343 GACACACGATGTAACCTATGCC 59.136 50.000 0.00 0.00 43.56 4.40
2716 9402 2.235155 ACACACGATGTAACCTATGCCA 59.765 45.455 0.00 0.00 40.88 4.92
2717 9403 3.266636 CACACGATGTAACCTATGCCAA 58.733 45.455 0.00 0.00 0.00 4.52
2718 9404 3.063452 CACACGATGTAACCTATGCCAAC 59.937 47.826 0.00 0.00 0.00 3.77
2719 9405 3.266636 CACGATGTAACCTATGCCAACA 58.733 45.455 0.00 0.00 0.00 3.33
2720 9406 3.876914 CACGATGTAACCTATGCCAACAT 59.123 43.478 0.00 0.00 40.49 2.71
2721 9407 5.053811 CACGATGTAACCTATGCCAACATA 58.946 41.667 0.00 0.00 37.74 2.29
2722 9408 5.525745 CACGATGTAACCTATGCCAACATAA 59.474 40.000 0.00 0.00 38.29 1.90
2723 9409 6.204688 CACGATGTAACCTATGCCAACATAAT 59.795 38.462 0.00 0.00 38.29 1.28
2724 9410 7.386573 CACGATGTAACCTATGCCAACATAATA 59.613 37.037 0.00 0.00 38.29 0.98
2725 9411 7.602644 ACGATGTAACCTATGCCAACATAATAG 59.397 37.037 0.00 0.00 38.29 1.73
2726 9412 7.413000 CGATGTAACCTATGCCAACATAATAGC 60.413 40.741 0.00 0.00 38.29 2.97
2727 9413 6.596621 TGTAACCTATGCCAACATAATAGCA 58.403 36.000 0.00 0.00 38.29 3.49
2728 9414 6.485313 TGTAACCTATGCCAACATAATAGCAC 59.515 38.462 0.00 0.00 38.29 4.40
2729 9415 4.398319 ACCTATGCCAACATAATAGCACC 58.602 43.478 0.00 0.00 38.29 5.01
2730 9416 3.436704 CCTATGCCAACATAATAGCACCG 59.563 47.826 0.00 0.00 38.29 4.94
2731 9417 1.674359 TGCCAACATAATAGCACCGG 58.326 50.000 0.00 0.00 0.00 5.28
2732 9418 1.210722 TGCCAACATAATAGCACCGGA 59.789 47.619 9.46 0.00 0.00 5.14
2733 9419 2.294074 GCCAACATAATAGCACCGGAA 58.706 47.619 9.46 0.00 0.00 4.30
2734 9420 2.032924 GCCAACATAATAGCACCGGAAC 59.967 50.000 9.46 0.00 0.00 3.62
2768 9454 3.434319 GCATGTGCCGGTGTCCAG 61.434 66.667 1.90 0.00 34.31 3.86
2769 9455 2.747460 CATGTGCCGGTGTCCAGG 60.747 66.667 1.90 0.00 0.00 4.45
2770 9456 4.033776 ATGTGCCGGTGTCCAGGG 62.034 66.667 1.90 0.00 0.00 4.45
2787 9473 4.825252 GCGACCGGGTGCGGTATT 62.825 66.667 3.30 0.00 43.07 1.89
2788 9474 2.888534 CGACCGGGTGCGGTATTG 60.889 66.667 3.30 0.00 43.07 1.90
2789 9475 2.266689 GACCGGGTGCGGTATTGT 59.733 61.111 3.30 0.00 43.07 2.71
2790 9476 1.516892 GACCGGGTGCGGTATTGTA 59.483 57.895 3.30 0.00 43.07 2.41
2791 9477 0.529119 GACCGGGTGCGGTATTGTAG 60.529 60.000 3.30 0.00 43.07 2.74
2792 9478 1.885850 CCGGGTGCGGTATTGTAGC 60.886 63.158 0.00 0.00 0.00 3.58
2799 9485 3.725485 CGGTATTGTAGCGGTGTCA 57.275 52.632 0.00 0.00 45.08 3.58
2800 9486 1.274596 CGGTATTGTAGCGGTGTCAC 58.725 55.000 0.00 0.00 45.08 3.67
2801 9487 1.274596 GGTATTGTAGCGGTGTCACG 58.725 55.000 0.00 0.00 0.00 4.35
2802 9488 1.274596 GTATTGTAGCGGTGTCACGG 58.725 55.000 6.18 6.18 0.00 4.94
2803 9489 1.135315 GTATTGTAGCGGTGTCACGGA 60.135 52.381 14.25 0.00 0.00 4.69
2804 9490 0.108804 ATTGTAGCGGTGTCACGGAG 60.109 55.000 14.25 1.45 0.00 4.63
2805 9491 1.174078 TTGTAGCGGTGTCACGGAGA 61.174 55.000 14.25 0.00 0.00 3.71
2806 9492 1.136984 GTAGCGGTGTCACGGAGAG 59.863 63.158 14.25 0.00 0.00 3.20
2807 9493 2.044555 TAGCGGTGTCACGGAGAGG 61.045 63.158 14.25 0.00 0.00 3.69
2808 9494 2.473891 TAGCGGTGTCACGGAGAGGA 62.474 60.000 14.25 0.00 0.00 3.71
2809 9495 2.878429 CGGTGTCACGGAGAGGAG 59.122 66.667 4.58 0.00 0.00 3.69
2810 9496 2.574399 GGTGTCACGGAGAGGAGC 59.426 66.667 0.00 0.00 0.00 4.70
2811 9497 2.179517 GTGTCACGGAGAGGAGCG 59.820 66.667 0.00 0.00 0.00 5.03
2812 9498 3.749064 TGTCACGGAGAGGAGCGC 61.749 66.667 0.00 0.00 0.00 5.92
2813 9499 4.500116 GTCACGGAGAGGAGCGCC 62.500 72.222 2.29 0.00 0.00 6.53
2817 9503 2.912542 CGGAGAGGAGCGCCCATA 60.913 66.667 15.92 0.00 37.41 2.74
2818 9504 2.925262 CGGAGAGGAGCGCCCATAG 61.925 68.421 15.92 1.06 37.41 2.23
2819 9505 1.834822 GGAGAGGAGCGCCCATAGT 60.835 63.158 15.92 0.00 37.41 2.12
2820 9506 1.663173 GAGAGGAGCGCCCATAGTC 59.337 63.158 15.92 5.90 37.41 2.59
2821 9507 1.075970 AGAGGAGCGCCCATAGTCA 60.076 57.895 15.92 0.00 37.41 3.41
2822 9508 1.112315 AGAGGAGCGCCCATAGTCAG 61.112 60.000 15.92 0.00 37.41 3.51
2823 9509 2.093537 GAGGAGCGCCCATAGTCAGG 62.094 65.000 15.92 0.00 37.41 3.86
2824 9510 2.280457 GAGCGCCCATAGTCAGGC 60.280 66.667 2.29 0.00 46.17 4.85
2828 9514 4.256180 GCCCATAGTCAGGCCCCG 62.256 72.222 0.00 0.00 43.76 5.73
2829 9515 3.560251 CCCATAGTCAGGCCCCGG 61.560 72.222 0.00 0.00 0.00 5.73
2830 9516 3.560251 CCATAGTCAGGCCCCGGG 61.560 72.222 15.80 15.80 0.00 5.73
2831 9517 3.560251 CATAGTCAGGCCCCGGGG 61.560 72.222 37.09 37.09 38.57 5.73
2832 9518 3.774336 ATAGTCAGGCCCCGGGGA 61.774 66.667 44.86 21.69 37.50 4.81
2833 9519 3.115017 ATAGTCAGGCCCCGGGGAT 62.115 63.158 44.86 28.05 37.50 3.85
2836 9522 4.096816 TCAGGCCCCGGGGATGTA 62.097 66.667 44.86 24.26 37.50 2.29
2837 9523 3.560251 CAGGCCCCGGGGATGTAG 61.560 72.222 44.86 22.59 37.50 2.74
2841 9527 2.854032 CCCCGGGGATGTAGCCAT 60.854 66.667 38.41 0.00 37.50 4.40
2842 9528 1.537889 CCCCGGGGATGTAGCCATA 60.538 63.158 38.41 0.00 37.50 2.74
2843 9529 0.914417 CCCCGGGGATGTAGCCATAT 60.914 60.000 38.41 0.00 37.50 1.78
2844 9530 0.541863 CCCGGGGATGTAGCCATATC 59.458 60.000 14.71 0.00 0.00 1.63
2845 9531 0.175760 CCGGGGATGTAGCCATATCG 59.824 60.000 0.00 0.00 0.00 2.92
2846 9532 0.175760 CGGGGATGTAGCCATATCGG 59.824 60.000 0.00 0.00 38.11 4.18
2847 9533 1.276622 GGGGATGTAGCCATATCGGT 58.723 55.000 0.00 0.00 36.97 4.69
2848 9534 1.066143 GGGGATGTAGCCATATCGGTG 60.066 57.143 0.00 0.00 36.97 4.94
2849 9535 1.899814 GGGATGTAGCCATATCGGTGA 59.100 52.381 0.00 0.00 36.97 4.02
2850 9536 2.301870 GGGATGTAGCCATATCGGTGAA 59.698 50.000 0.00 0.00 36.97 3.18
2851 9537 3.326747 GGATGTAGCCATATCGGTGAAC 58.673 50.000 0.00 0.00 36.97 3.18
2852 9538 3.244078 GGATGTAGCCATATCGGTGAACA 60.244 47.826 0.00 0.00 36.97 3.18
2853 9539 4.563580 GGATGTAGCCATATCGGTGAACAT 60.564 45.833 0.00 0.00 36.68 2.71
2854 9540 3.990092 TGTAGCCATATCGGTGAACATC 58.010 45.455 0.00 0.00 36.97 3.06
2855 9541 2.154854 AGCCATATCGGTGAACATCG 57.845 50.000 0.75 0.75 36.97 3.84
2856 9542 1.412710 AGCCATATCGGTGAACATCGT 59.587 47.619 7.33 0.00 36.14 3.73
2857 9543 2.158957 AGCCATATCGGTGAACATCGTT 60.159 45.455 7.33 2.19 36.14 3.85
2858 9544 3.069016 AGCCATATCGGTGAACATCGTTA 59.931 43.478 7.33 4.32 36.14 3.18
2859 9545 3.805422 GCCATATCGGTGAACATCGTTAA 59.195 43.478 7.33 0.00 36.14 2.01
2860 9546 4.318546 GCCATATCGGTGAACATCGTTAAC 60.319 45.833 7.33 0.00 36.14 2.01
2861 9547 4.806775 CCATATCGGTGAACATCGTTAACA 59.193 41.667 6.39 0.00 36.14 2.41
2862 9548 5.292345 CCATATCGGTGAACATCGTTAACAA 59.708 40.000 6.39 0.00 36.14 2.83
2863 9549 6.183360 CCATATCGGTGAACATCGTTAACAAA 60.183 38.462 6.39 0.00 36.14 2.83
2864 9550 5.873179 ATCGGTGAACATCGTTAACAAAT 57.127 34.783 6.39 0.00 36.14 2.32
2865 9551 5.272167 TCGGTGAACATCGTTAACAAATC 57.728 39.130 6.39 0.00 36.14 2.17
2866 9552 4.992319 TCGGTGAACATCGTTAACAAATCT 59.008 37.500 6.39 0.00 36.14 2.40
2867 9553 5.119588 TCGGTGAACATCGTTAACAAATCTC 59.880 40.000 6.39 0.00 36.14 2.75
2868 9554 5.313623 GGTGAACATCGTTAACAAATCTCG 58.686 41.667 6.39 0.00 0.00 4.04
2869 9555 5.313623 GTGAACATCGTTAACAAATCTCGG 58.686 41.667 6.39 0.00 0.00 4.63
2870 9556 4.992319 TGAACATCGTTAACAAATCTCGGT 59.008 37.500 6.39 0.00 0.00 4.69
2871 9557 4.921470 ACATCGTTAACAAATCTCGGTG 57.079 40.909 6.39 0.00 38.37 4.94
2872 9558 4.312443 ACATCGTTAACAAATCTCGGTGT 58.688 39.130 6.39 0.00 40.25 4.16
2873 9559 4.387862 ACATCGTTAACAAATCTCGGTGTC 59.612 41.667 6.39 0.00 40.95 3.67
2874 9560 2.981805 TCGTTAACAAATCTCGGTGTCG 59.018 45.455 6.39 0.00 37.82 4.35
2875 9561 2.727798 CGTTAACAAATCTCGGTGTCGT 59.272 45.455 6.39 0.00 37.69 4.34
2876 9562 3.421312 CGTTAACAAATCTCGGTGTCGTG 60.421 47.826 6.39 0.00 37.69 4.35
2877 9563 0.865769 AACAAATCTCGGTGTCGTGC 59.134 50.000 0.00 0.00 37.69 5.34
2878 9564 0.033504 ACAAATCTCGGTGTCGTGCT 59.966 50.000 0.00 0.00 37.69 4.40
2879 9565 0.716108 CAAATCTCGGTGTCGTGCTC 59.284 55.000 0.00 0.00 37.69 4.26
2880 9566 0.732880 AAATCTCGGTGTCGTGCTCG 60.733 55.000 0.81 0.81 37.69 5.03
2881 9567 1.863662 AATCTCGGTGTCGTGCTCGT 61.864 55.000 8.17 0.00 38.33 4.18
2882 9568 2.529005 ATCTCGGTGTCGTGCTCGTG 62.529 60.000 8.17 0.00 38.33 4.35
2883 9569 3.538028 CTCGGTGTCGTGCTCGTGT 62.538 63.158 8.17 0.00 38.33 4.49
2884 9570 3.394874 CGGTGTCGTGCTCGTGTG 61.395 66.667 8.17 0.00 38.33 3.82
2885 9571 2.027024 GGTGTCGTGCTCGTGTGA 59.973 61.111 8.17 0.00 38.33 3.58
2886 9572 1.372997 GGTGTCGTGCTCGTGTGAT 60.373 57.895 8.17 0.00 38.33 3.06
2887 9573 0.944311 GGTGTCGTGCTCGTGTGATT 60.944 55.000 8.17 0.00 38.33 2.57
2888 9574 0.161658 GTGTCGTGCTCGTGTGATTG 59.838 55.000 8.17 0.00 38.33 2.67
2889 9575 1.130613 GTCGTGCTCGTGTGATTGC 59.869 57.895 8.17 0.00 38.33 3.56
2890 9576 1.006220 TCGTGCTCGTGTGATTGCT 60.006 52.632 8.17 0.00 38.33 3.91
2891 9577 0.599991 TCGTGCTCGTGTGATTGCTT 60.600 50.000 8.17 0.00 38.33 3.91
2892 9578 0.451628 CGTGCTCGTGTGATTGCTTG 60.452 55.000 0.00 0.00 0.00 4.01
2893 9579 0.867746 GTGCTCGTGTGATTGCTTGA 59.132 50.000 0.00 0.00 0.00 3.02
2894 9580 1.466167 GTGCTCGTGTGATTGCTTGAT 59.534 47.619 0.00 0.00 0.00 2.57
2895 9581 1.733912 TGCTCGTGTGATTGCTTGATC 59.266 47.619 0.00 0.00 0.00 2.92
2896 9582 1.063174 GCTCGTGTGATTGCTTGATCC 59.937 52.381 0.00 0.00 0.00 3.36
2897 9583 2.625737 CTCGTGTGATTGCTTGATCCT 58.374 47.619 0.00 0.00 0.00 3.24
2898 9584 2.606725 CTCGTGTGATTGCTTGATCCTC 59.393 50.000 0.00 0.00 0.00 3.71
2899 9585 1.325640 CGTGTGATTGCTTGATCCTCG 59.674 52.381 0.00 0.00 0.00 4.63
2900 9586 1.667724 GTGTGATTGCTTGATCCTCGG 59.332 52.381 0.00 0.00 0.00 4.63
2901 9587 1.554617 TGTGATTGCTTGATCCTCGGA 59.445 47.619 0.00 0.00 0.00 4.55
2902 9588 2.171237 TGTGATTGCTTGATCCTCGGAT 59.829 45.455 0.00 0.00 37.59 4.18
2903 9589 2.547211 GTGATTGCTTGATCCTCGGATG 59.453 50.000 2.58 0.00 34.60 3.51
2904 9590 2.435437 TGATTGCTTGATCCTCGGATGA 59.565 45.455 2.58 0.00 34.60 2.92
2905 9591 3.072038 TGATTGCTTGATCCTCGGATGAT 59.928 43.478 2.58 0.00 34.60 2.45
2906 9592 3.565764 TTGCTTGATCCTCGGATGATT 57.434 42.857 2.58 0.00 34.60 2.57
2907 9593 2.842457 TGCTTGATCCTCGGATGATTG 58.158 47.619 2.58 0.00 34.60 2.67
2908 9594 2.435437 TGCTTGATCCTCGGATGATTGA 59.565 45.455 2.58 0.00 34.60 2.57
2909 9595 2.805099 GCTTGATCCTCGGATGATTGAC 59.195 50.000 2.58 0.00 34.60 3.18
2910 9596 2.800881 TGATCCTCGGATGATTGACG 57.199 50.000 2.58 0.00 34.60 4.35
2911 9597 1.341209 TGATCCTCGGATGATTGACGG 59.659 52.381 2.58 0.00 34.60 4.79
2912 9598 1.613925 GATCCTCGGATGATTGACGGA 59.386 52.381 2.58 0.00 34.60 4.69
2913 9599 1.032794 TCCTCGGATGATTGACGGAG 58.967 55.000 0.00 0.00 34.69 4.63
2914 9600 3.017054 ATCCTCGGATGATTGACGGAGT 61.017 50.000 0.00 0.00 37.05 3.85
2915 9601 5.112571 ATCCTCGGATGATTGACGGAGTG 62.113 52.174 0.00 0.00 35.01 3.51
2925 9611 3.388841 ACGGAGTGCCTCGGATTT 58.611 55.556 13.93 0.00 42.51 2.17
2926 9612 2.587080 ACGGAGTGCCTCGGATTTA 58.413 52.632 13.93 0.00 42.51 1.40
2927 9613 1.120530 ACGGAGTGCCTCGGATTTAT 58.879 50.000 13.93 0.00 42.51 1.40
2928 9614 1.485066 ACGGAGTGCCTCGGATTTATT 59.515 47.619 13.93 0.00 42.51 1.40
2929 9615 2.135933 CGGAGTGCCTCGGATTTATTC 58.864 52.381 4.44 0.00 33.52 1.75
2930 9616 2.224066 CGGAGTGCCTCGGATTTATTCT 60.224 50.000 4.44 0.00 33.52 2.40
2931 9617 3.005472 CGGAGTGCCTCGGATTTATTCTA 59.995 47.826 4.44 0.00 33.52 2.10
2932 9618 4.500887 CGGAGTGCCTCGGATTTATTCTAA 60.501 45.833 4.44 0.00 33.52 2.10
2933 9619 4.750598 GGAGTGCCTCGGATTTATTCTAAC 59.249 45.833 0.00 0.00 0.00 2.34
2934 9620 5.353394 AGTGCCTCGGATTTATTCTAACA 57.647 39.130 0.00 0.00 0.00 2.41
2935 9621 5.741011 AGTGCCTCGGATTTATTCTAACAA 58.259 37.500 0.00 0.00 0.00 2.83
2936 9622 6.177610 AGTGCCTCGGATTTATTCTAACAAA 58.822 36.000 0.00 0.00 0.00 2.83
2937 9623 6.093633 AGTGCCTCGGATTTATTCTAACAAAC 59.906 38.462 0.00 0.00 0.00 2.93
2938 9624 5.941058 TGCCTCGGATTTATTCTAACAAACA 59.059 36.000 0.00 0.00 0.00 2.83
2939 9625 6.093495 TGCCTCGGATTTATTCTAACAAACAG 59.907 38.462 0.00 0.00 0.00 3.16
2972 9658 1.146774 TGCTCCCAGGATCCAACAAAA 59.853 47.619 15.82 0.00 0.00 2.44
2987 9673 7.111247 TCCAACAAAACAGAGAAATTGACAT 57.889 32.000 0.00 0.00 0.00 3.06
3008 9694 8.685427 TGACATAATGAATGGTATTTGGAAGTG 58.315 33.333 0.00 0.00 40.16 3.16
3216 9904 7.678947 AAGTTTGTAGATGGAAGTCAATCAG 57.321 36.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.563808 ACAGTGAATAACGCTTTGCAAGA 59.436 39.130 0.00 0.00 37.22 3.02
1 2 3.888934 ACAGTGAATAACGCTTTGCAAG 58.111 40.909 0.00 0.00 37.22 4.01
2 3 3.980646 ACAGTGAATAACGCTTTGCAA 57.019 38.095 0.00 0.00 37.22 4.08
3 4 3.810386 TGTACAGTGAATAACGCTTTGCA 59.190 39.130 0.00 0.00 37.22 4.08
5 6 6.015504 GTGATGTACAGTGAATAACGCTTTG 58.984 40.000 0.33 0.00 37.22 2.77
6 7 5.932303 AGTGATGTACAGTGAATAACGCTTT 59.068 36.000 0.33 0.00 37.22 3.51
7 8 5.479306 AGTGATGTACAGTGAATAACGCTT 58.521 37.500 0.33 0.00 37.22 4.68
8 9 5.073311 AGTGATGTACAGTGAATAACGCT 57.927 39.130 0.33 0.00 40.24 5.07
18 19 3.259374 AGTTAGCAGCAGTGATGTACAGT 59.741 43.478 10.56 0.00 0.00 3.55
19 20 3.854666 AGTTAGCAGCAGTGATGTACAG 58.145 45.455 10.56 0.00 0.00 2.74
20 21 3.258123 TGAGTTAGCAGCAGTGATGTACA 59.742 43.478 10.56 0.00 0.00 2.90
21 22 3.849911 TGAGTTAGCAGCAGTGATGTAC 58.150 45.455 10.56 6.31 0.00 2.90
22 23 4.220602 TCTTGAGTTAGCAGCAGTGATGTA 59.779 41.667 10.56 0.00 0.00 2.29
23 24 3.007290 TCTTGAGTTAGCAGCAGTGATGT 59.993 43.478 10.56 0.00 0.00 3.06
24 25 3.593096 TCTTGAGTTAGCAGCAGTGATG 58.407 45.455 3.40 3.40 0.00 3.07
25 26 3.969287 TCTTGAGTTAGCAGCAGTGAT 57.031 42.857 0.00 0.00 0.00 3.06
26 27 3.969287 ATCTTGAGTTAGCAGCAGTGA 57.031 42.857 0.00 0.00 0.00 3.41
27 28 4.093115 CAGAATCTTGAGTTAGCAGCAGTG 59.907 45.833 0.00 0.00 0.00 3.66
28 29 4.252073 CAGAATCTTGAGTTAGCAGCAGT 58.748 43.478 0.00 0.00 0.00 4.40
29 30 3.622163 CCAGAATCTTGAGTTAGCAGCAG 59.378 47.826 0.00 0.00 0.00 4.24
30 31 3.261643 TCCAGAATCTTGAGTTAGCAGCA 59.738 43.478 0.00 0.00 0.00 4.41
31 32 3.866651 TCCAGAATCTTGAGTTAGCAGC 58.133 45.455 0.00 0.00 0.00 5.25
32 33 5.916318 AGATCCAGAATCTTGAGTTAGCAG 58.084 41.667 0.00 0.00 42.30 4.24
33 34 5.946942 AGATCCAGAATCTTGAGTTAGCA 57.053 39.130 0.00 0.00 42.30 3.49
34 35 7.984617 ACTTTAGATCCAGAATCTTGAGTTAGC 59.015 37.037 0.00 0.00 42.30 3.09
35 36 9.311916 CACTTTAGATCCAGAATCTTGAGTTAG 57.688 37.037 0.00 0.00 42.30 2.34
36 37 8.816894 ACACTTTAGATCCAGAATCTTGAGTTA 58.183 33.333 0.00 0.00 42.30 2.24
37 38 7.684529 ACACTTTAGATCCAGAATCTTGAGTT 58.315 34.615 0.00 0.00 42.30 3.01
38 39 7.251321 ACACTTTAGATCCAGAATCTTGAGT 57.749 36.000 0.00 0.00 42.30 3.41
39 40 7.413877 GCAACACTTTAGATCCAGAATCTTGAG 60.414 40.741 0.00 0.00 42.30 3.02
40 41 6.372659 GCAACACTTTAGATCCAGAATCTTGA 59.627 38.462 0.00 0.00 42.30 3.02
41 42 6.149973 TGCAACACTTTAGATCCAGAATCTTG 59.850 38.462 0.00 0.00 42.30 3.02
42 43 6.240894 TGCAACACTTTAGATCCAGAATCTT 58.759 36.000 0.00 0.00 42.30 2.40
43 44 5.809001 TGCAACACTTTAGATCCAGAATCT 58.191 37.500 0.00 0.00 46.70 2.40
44 45 6.072508 TGTTGCAACACTTTAGATCCAGAATC 60.073 38.462 27.96 0.00 33.17 2.52
45 46 5.769662 TGTTGCAACACTTTAGATCCAGAAT 59.230 36.000 27.96 0.00 33.17 2.40
46 47 5.129634 TGTTGCAACACTTTAGATCCAGAA 58.870 37.500 27.96 0.00 33.17 3.02
47 48 4.713553 TGTTGCAACACTTTAGATCCAGA 58.286 39.130 27.96 0.00 33.17 3.86
48 49 5.437289 TTGTTGCAACACTTTAGATCCAG 57.563 39.130 31.17 0.00 38.92 3.86
49 50 5.735922 GCTTTGTTGCAACACTTTAGATCCA 60.736 40.000 31.17 10.40 38.92 3.41
50 51 4.681483 GCTTTGTTGCAACACTTTAGATCC 59.319 41.667 31.17 10.11 38.92 3.36
51 52 5.280945 TGCTTTGTTGCAACACTTTAGATC 58.719 37.500 31.17 14.28 40.29 2.75
52 53 5.261209 TGCTTTGTTGCAACACTTTAGAT 57.739 34.783 31.17 0.00 40.29 1.98
53 54 4.710423 TGCTTTGTTGCAACACTTTAGA 57.290 36.364 31.17 13.47 40.29 2.10
54 55 5.115472 CGTATGCTTTGTTGCAACACTTTAG 59.885 40.000 31.17 23.52 46.61 1.85
55 56 4.973051 CGTATGCTTTGTTGCAACACTTTA 59.027 37.500 31.17 18.06 46.61 1.85
56 57 3.796178 CGTATGCTTTGTTGCAACACTTT 59.204 39.130 31.17 16.28 46.61 2.66
57 58 3.066064 TCGTATGCTTTGTTGCAACACTT 59.934 39.130 31.17 19.11 46.61 3.16
58 59 2.616376 TCGTATGCTTTGTTGCAACACT 59.384 40.909 31.17 15.48 46.61 3.55
59 60 2.719046 GTCGTATGCTTTGTTGCAACAC 59.281 45.455 31.17 20.11 46.61 3.32
60 61 2.356069 TGTCGTATGCTTTGTTGCAACA 59.644 40.909 27.96 27.96 46.61 3.33
61 62 2.973224 CTGTCGTATGCTTTGTTGCAAC 59.027 45.455 22.83 22.83 46.61 4.17
62 63 2.875317 TCTGTCGTATGCTTTGTTGCAA 59.125 40.909 0.00 0.00 46.61 4.08
63 64 6.185172 CGATCTGTCGTATGCTTTGTTGCA 62.185 45.833 0.00 0.00 43.80 4.08
64 65 3.674423 GATCTGTCGTATGCTTTGTTGC 58.326 45.455 0.00 0.00 0.00 4.17
65 66 3.242091 CCGATCTGTCGTATGCTTTGTTG 60.242 47.826 0.00 0.00 46.25 3.33
66 67 2.930040 CCGATCTGTCGTATGCTTTGTT 59.070 45.455 0.00 0.00 46.25 2.83
67 68 2.094182 ACCGATCTGTCGTATGCTTTGT 60.094 45.455 0.00 0.00 46.25 2.83
68 69 2.282555 CACCGATCTGTCGTATGCTTTG 59.717 50.000 0.00 0.00 46.25 2.77
69 70 2.094182 ACACCGATCTGTCGTATGCTTT 60.094 45.455 0.00 0.00 46.25 3.51
70 71 1.476891 ACACCGATCTGTCGTATGCTT 59.523 47.619 0.00 0.00 46.25 3.91
71 72 1.103803 ACACCGATCTGTCGTATGCT 58.896 50.000 0.00 0.00 46.25 3.79
72 73 2.768833 TACACCGATCTGTCGTATGC 57.231 50.000 0.00 0.00 46.25 3.14
73 74 4.855531 TCATTACACCGATCTGTCGTATG 58.144 43.478 0.00 0.00 46.25 2.39
74 75 5.163591 TGTTCATTACACCGATCTGTCGTAT 60.164 40.000 0.00 0.00 46.25 3.06
75 76 4.156373 TGTTCATTACACCGATCTGTCGTA 59.844 41.667 0.00 0.00 46.25 3.43
76 77 3.057104 TGTTCATTACACCGATCTGTCGT 60.057 43.478 0.00 0.00 46.25 4.34
77 78 3.924073 TTGTTCATTACACCGATCTGTCG 59.076 43.478 0.00 0.00 38.87 4.35
78 79 5.856126 TTTGTTCATTACACCGATCTGTC 57.144 39.130 0.00 0.00 36.21 3.51
79 80 6.817765 AATTTGTTCATTACACCGATCTGT 57.182 33.333 0.00 0.00 36.21 3.41
80 81 7.279981 TCCTAATTTGTTCATTACACCGATCTG 59.720 37.037 0.00 0.00 36.21 2.90
81 82 7.335627 TCCTAATTTGTTCATTACACCGATCT 58.664 34.615 0.00 0.00 36.21 2.75
82 83 7.548196 TCCTAATTTGTTCATTACACCGATC 57.452 36.000 0.00 0.00 36.21 3.69
83 84 6.038271 GCTCCTAATTTGTTCATTACACCGAT 59.962 38.462 0.00 0.00 36.21 4.18
84 85 5.353123 GCTCCTAATTTGTTCATTACACCGA 59.647 40.000 0.00 0.00 36.21 4.69
85 86 5.448632 GGCTCCTAATTTGTTCATTACACCG 60.449 44.000 0.00 0.00 36.21 4.94
86 87 5.448632 CGGCTCCTAATTTGTTCATTACACC 60.449 44.000 0.00 0.00 36.21 4.16
87 88 5.448632 CCGGCTCCTAATTTGTTCATTACAC 60.449 44.000 0.00 0.00 36.21 2.90
88 89 4.638421 CCGGCTCCTAATTTGTTCATTACA 59.362 41.667 0.00 0.00 34.12 2.41
89 90 4.879545 TCCGGCTCCTAATTTGTTCATTAC 59.120 41.667 0.00 0.00 0.00 1.89
90 91 5.105567 TCCGGCTCCTAATTTGTTCATTA 57.894 39.130 0.00 0.00 0.00 1.90
91 92 3.963129 TCCGGCTCCTAATTTGTTCATT 58.037 40.909 0.00 0.00 0.00 2.57
92 93 3.644966 TCCGGCTCCTAATTTGTTCAT 57.355 42.857 0.00 0.00 0.00 2.57
93 94 3.644966 ATCCGGCTCCTAATTTGTTCA 57.355 42.857 0.00 0.00 0.00 3.18
94 95 3.315470 GGAATCCGGCTCCTAATTTGTTC 59.685 47.826 13.65 0.00 0.00 3.18
95 96 3.288092 GGAATCCGGCTCCTAATTTGTT 58.712 45.455 13.65 0.00 0.00 2.83
96 97 2.241176 TGGAATCCGGCTCCTAATTTGT 59.759 45.455 19.65 0.00 33.77 2.83
97 98 2.930950 TGGAATCCGGCTCCTAATTTG 58.069 47.619 19.65 0.00 33.77 2.32
125 126 4.123497 TCTGGACATCTGTTCCGTTATG 57.877 45.455 0.00 0.00 0.00 1.90
133 134 5.888161 AGTTTCTTTGTTCTGGACATCTGTT 59.112 36.000 0.00 0.00 38.26 3.16
140 141 6.386654 TGTTTTCAGTTTCTTTGTTCTGGAC 58.613 36.000 0.00 0.00 0.00 4.02
259 262 4.202151 GGCAAACTCTTCTGTGTCCATTTT 60.202 41.667 0.00 0.00 0.00 1.82
364 2842 5.009410 GGCAAAATATCATCTTGGGAGAGTG 59.991 44.000 0.00 0.00 34.85 3.51
412 2902 7.807977 AATGCGATCAAATCTTGTATAGGTT 57.192 32.000 0.00 0.00 0.00 3.50
465 2955 3.801594 GTGCGTTGTTTGATGATTTTGGT 59.198 39.130 0.00 0.00 0.00 3.67
514 3008 9.108449 CGAATTATATCTGTACGTCTTCAAGAG 57.892 37.037 0.00 0.00 0.00 2.85
580 4752 4.365514 TCAAGGGTCAGCATAAAACAGA 57.634 40.909 0.00 0.00 0.00 3.41
654 4826 0.755686 GGGGATAGCAGACCAGACAG 59.244 60.000 0.00 0.00 0.00 3.51
981 5864 2.024176 TGGGACTTTCAGCTGTAGGA 57.976 50.000 14.67 0.00 0.00 2.94
1057 6168 2.695359 CGTAGGTGTTACATTGGCTGT 58.305 47.619 0.00 0.00 42.13 4.40
1138 6249 8.579863 AGCTAAAATTGCAACAACTCTTCTTAT 58.420 29.630 0.00 0.00 0.00 1.73
1181 6292 6.639632 TGAGGAACAAGATGGAAAGAAAAG 57.360 37.500 0.00 0.00 0.00 2.27
1602 6722 1.750399 CGTGCTCCAATTCAGGGGG 60.750 63.158 0.00 0.00 0.00 5.40
1656 8330 3.198417 TGCACTCCTCATGAAGATAAGCA 59.802 43.478 9.91 9.91 0.00 3.91
1972 8647 5.880887 ACCGATTATTCTTCACCTTTTCCTC 59.119 40.000 0.00 0.00 0.00 3.71
2139 8816 0.394762 TCTCTGCATTCATGGCACCC 60.395 55.000 0.00 0.00 36.11 4.61
2560 9246 5.049680 ACACAATATTCGACACAACTCCAAC 60.050 40.000 0.00 0.00 0.00 3.77
2561 9247 5.060506 ACACAATATTCGACACAACTCCAA 58.939 37.500 0.00 0.00 0.00 3.53
2562 9248 4.637276 ACACAATATTCGACACAACTCCA 58.363 39.130 0.00 0.00 0.00 3.86
2563 9249 5.636121 TGTACACAATATTCGACACAACTCC 59.364 40.000 0.00 0.00 0.00 3.85
2564 9250 6.699895 TGTACACAATATTCGACACAACTC 57.300 37.500 0.00 0.00 0.00 3.01
2565 9251 6.147164 CCTTGTACACAATATTCGACACAACT 59.853 38.462 0.00 0.00 35.02 3.16
2566 9252 6.073440 ACCTTGTACACAATATTCGACACAAC 60.073 38.462 0.00 0.00 35.02 3.32
2567 9253 5.992829 ACCTTGTACACAATATTCGACACAA 59.007 36.000 0.00 0.00 35.02 3.33
2568 9254 5.543714 ACCTTGTACACAATATTCGACACA 58.456 37.500 0.00 0.00 35.02 3.72
2569 9255 6.255020 CCTACCTTGTACACAATATTCGACAC 59.745 42.308 0.00 0.00 35.02 3.67
2570 9256 6.071221 ACCTACCTTGTACACAATATTCGACA 60.071 38.462 0.00 0.00 35.02 4.35
2571 9257 6.335777 ACCTACCTTGTACACAATATTCGAC 58.664 40.000 0.00 0.00 35.02 4.20
2572 9258 6.534475 ACCTACCTTGTACACAATATTCGA 57.466 37.500 0.00 0.00 35.02 3.71
2573 9259 7.760794 TGTAACCTACCTTGTACACAATATTCG 59.239 37.037 0.00 0.00 35.02 3.34
2574 9260 9.095065 CTGTAACCTACCTTGTACACAATATTC 57.905 37.037 0.00 0.00 35.02 1.75
2575 9261 8.599792 ACTGTAACCTACCTTGTACACAATATT 58.400 33.333 0.00 0.00 35.02 1.28
2576 9262 8.142485 ACTGTAACCTACCTTGTACACAATAT 57.858 34.615 0.00 0.00 35.02 1.28
2577 9263 7.543359 ACTGTAACCTACCTTGTACACAATA 57.457 36.000 0.00 0.00 35.02 1.90
2578 9264 6.429521 ACTGTAACCTACCTTGTACACAAT 57.570 37.500 0.00 0.00 35.02 2.71
2579 9265 5.874897 ACTGTAACCTACCTTGTACACAA 57.125 39.130 0.00 0.00 0.00 3.33
2580 9266 5.453621 CCAACTGTAACCTACCTTGTACACA 60.454 44.000 0.00 0.00 0.00 3.72
2581 9267 4.992951 CCAACTGTAACCTACCTTGTACAC 59.007 45.833 0.00 0.00 0.00 2.90
2582 9268 4.040706 CCCAACTGTAACCTACCTTGTACA 59.959 45.833 0.00 0.00 0.00 2.90
2583 9269 4.572909 CCCAACTGTAACCTACCTTGTAC 58.427 47.826 0.00 0.00 0.00 2.90
2584 9270 3.008266 GCCCAACTGTAACCTACCTTGTA 59.992 47.826 0.00 0.00 0.00 2.41
2585 9271 2.224695 GCCCAACTGTAACCTACCTTGT 60.225 50.000 0.00 0.00 0.00 3.16
2586 9272 2.039879 AGCCCAACTGTAACCTACCTTG 59.960 50.000 0.00 0.00 0.00 3.61
2587 9273 2.345560 AGCCCAACTGTAACCTACCTT 58.654 47.619 0.00 0.00 0.00 3.50
2588 9274 2.039879 CAAGCCCAACTGTAACCTACCT 59.960 50.000 0.00 0.00 0.00 3.08
2589 9275 2.224695 ACAAGCCCAACTGTAACCTACC 60.225 50.000 0.00 0.00 0.00 3.18
2590 9276 3.136009 ACAAGCCCAACTGTAACCTAC 57.864 47.619 0.00 0.00 0.00 3.18
2591 9277 3.905591 ACTACAAGCCCAACTGTAACCTA 59.094 43.478 0.00 0.00 0.00 3.08
2592 9278 2.709397 ACTACAAGCCCAACTGTAACCT 59.291 45.455 0.00 0.00 0.00 3.50
2593 9279 3.136009 ACTACAAGCCCAACTGTAACC 57.864 47.619 0.00 0.00 0.00 2.85
2594 9280 3.881089 ACAACTACAAGCCCAACTGTAAC 59.119 43.478 0.00 0.00 0.00 2.50
2595 9281 4.159244 ACAACTACAAGCCCAACTGTAA 57.841 40.909 0.00 0.00 0.00 2.41
2596 9282 3.849563 ACAACTACAAGCCCAACTGTA 57.150 42.857 0.00 0.00 0.00 2.74
2597 9283 2.729028 ACAACTACAAGCCCAACTGT 57.271 45.000 0.00 0.00 0.00 3.55
2598 9284 4.518970 ACAATACAACTACAAGCCCAACTG 59.481 41.667 0.00 0.00 0.00 3.16
2599 9285 4.518970 CACAATACAACTACAAGCCCAACT 59.481 41.667 0.00 0.00 0.00 3.16
2600 9286 4.277423 ACACAATACAACTACAAGCCCAAC 59.723 41.667 0.00 0.00 0.00 3.77
2601 9287 4.465886 ACACAATACAACTACAAGCCCAA 58.534 39.130 0.00 0.00 0.00 4.12
2602 9288 4.093472 ACACAATACAACTACAAGCCCA 57.907 40.909 0.00 0.00 0.00 5.36
2603 9289 5.447624 AAACACAATACAACTACAAGCCC 57.552 39.130 0.00 0.00 0.00 5.19
2604 9290 7.429636 TCTAAACACAATACAACTACAAGCC 57.570 36.000 0.00 0.00 0.00 4.35
2617 9303 8.307483 CGACTCCATATCCTATCTAAACACAAT 58.693 37.037 0.00 0.00 0.00 2.71
2618 9304 7.287005 ACGACTCCATATCCTATCTAAACACAA 59.713 37.037 0.00 0.00 0.00 3.33
2619 9305 6.776116 ACGACTCCATATCCTATCTAAACACA 59.224 38.462 0.00 0.00 0.00 3.72
2620 9306 7.085116 CACGACTCCATATCCTATCTAAACAC 58.915 42.308 0.00 0.00 0.00 3.32
2621 9307 6.776116 ACACGACTCCATATCCTATCTAAACA 59.224 38.462 0.00 0.00 0.00 2.83
2622 9308 7.216973 ACACGACTCCATATCCTATCTAAAC 57.783 40.000 0.00 0.00 0.00 2.01
2623 9309 6.433404 GGACACGACTCCATATCCTATCTAAA 59.567 42.308 0.00 0.00 0.00 1.85
2624 9310 5.944599 GGACACGACTCCATATCCTATCTAA 59.055 44.000 0.00 0.00 0.00 2.10
2625 9311 5.013808 TGGACACGACTCCATATCCTATCTA 59.986 44.000 2.18 0.00 35.23 1.98
2626 9312 4.202577 TGGACACGACTCCATATCCTATCT 60.203 45.833 2.18 0.00 35.23 1.98
2627 9313 4.079970 TGGACACGACTCCATATCCTATC 58.920 47.826 2.18 0.00 35.23 2.08
2628 9314 4.114015 TGGACACGACTCCATATCCTAT 57.886 45.455 2.18 0.00 35.23 2.57
2629 9315 3.588210 TGGACACGACTCCATATCCTA 57.412 47.619 2.18 0.00 35.23 2.94
2630 9316 2.454336 TGGACACGACTCCATATCCT 57.546 50.000 2.18 0.00 35.23 3.24
2631 9317 3.753294 ATTGGACACGACTCCATATCC 57.247 47.619 6.65 0.00 40.18 2.59
2632 9318 5.010719 TCCTAATTGGACACGACTCCATATC 59.989 44.000 6.65 0.00 40.18 1.63
2633 9319 4.899457 TCCTAATTGGACACGACTCCATAT 59.101 41.667 6.65 2.78 40.18 1.78
2634 9320 4.283337 TCCTAATTGGACACGACTCCATA 58.717 43.478 6.65 0.00 40.18 2.74
2635 9321 3.104512 TCCTAATTGGACACGACTCCAT 58.895 45.455 6.65 0.00 40.18 3.41
2636 9322 2.531771 TCCTAATTGGACACGACTCCA 58.468 47.619 2.18 2.18 40.56 3.86
2654 9340 4.538738 AGAGGTCTAGGATACAAGTGTCC 58.461 47.826 7.82 7.82 40.69 4.02
2655 9341 5.194432 TGAGAGGTCTAGGATACAAGTGTC 58.806 45.833 0.00 0.00 41.41 3.67
2656 9342 5.194473 TGAGAGGTCTAGGATACAAGTGT 57.806 43.478 0.00 0.00 41.41 3.55
2657 9343 9.693739 ATATATGAGAGGTCTAGGATACAAGTG 57.306 37.037 0.00 0.00 41.41 3.16
2660 9346 9.854668 GCTATATATGAGAGGTCTAGGATACAA 57.145 37.037 0.00 0.00 41.41 2.41
2661 9347 8.151596 CGCTATATATGAGAGGTCTAGGATACA 58.848 40.741 0.00 0.00 41.41 2.29
2662 9348 7.604927 CCGCTATATATGAGAGGTCTAGGATAC 59.395 44.444 0.00 0.00 0.00 2.24
2663 9349 7.256727 CCCGCTATATATGAGAGGTCTAGGATA 60.257 44.444 0.00 0.00 32.37 2.59
2664 9350 6.466615 CCCGCTATATATGAGAGGTCTAGGAT 60.467 46.154 0.00 0.00 32.37 3.24
2665 9351 5.163184 CCCGCTATATATGAGAGGTCTAGGA 60.163 48.000 0.00 0.00 32.37 2.94
2666 9352 5.067273 CCCGCTATATATGAGAGGTCTAGG 58.933 50.000 0.00 0.00 32.37 3.02
2667 9353 5.067273 CCCCGCTATATATGAGAGGTCTAG 58.933 50.000 0.00 0.00 32.37 2.43
2668 9354 4.141228 CCCCCGCTATATATGAGAGGTCTA 60.141 50.000 0.00 0.00 32.37 2.59
2669 9355 3.373220 CCCCCGCTATATATGAGAGGTCT 60.373 52.174 0.00 0.00 32.37 3.85
2670 9356 2.959707 CCCCCGCTATATATGAGAGGTC 59.040 54.545 0.00 0.00 32.37 3.85
2671 9357 2.315155 ACCCCCGCTATATATGAGAGGT 59.685 50.000 0.00 0.00 32.37 3.85
2672 9358 3.033659 ACCCCCGCTATATATGAGAGG 57.966 52.381 0.00 1.05 33.94 3.69
2673 9359 4.822896 GTCTACCCCCGCTATATATGAGAG 59.177 50.000 0.00 0.00 0.00 3.20
2674 9360 4.228895 TGTCTACCCCCGCTATATATGAGA 59.771 45.833 0.00 0.00 0.00 3.27
2675 9361 4.338682 GTGTCTACCCCCGCTATATATGAG 59.661 50.000 0.00 0.00 0.00 2.90
2676 9362 4.264038 TGTGTCTACCCCCGCTATATATGA 60.264 45.833 0.00 0.00 0.00 2.15
2677 9363 4.021229 TGTGTCTACCCCCGCTATATATG 58.979 47.826 0.00 0.00 0.00 1.78
2678 9364 4.021916 GTGTGTCTACCCCCGCTATATAT 58.978 47.826 0.00 0.00 0.00 0.86
2679 9365 3.424703 GTGTGTCTACCCCCGCTATATA 58.575 50.000 0.00 0.00 0.00 0.86
2680 9366 2.245582 GTGTGTCTACCCCCGCTATAT 58.754 52.381 0.00 0.00 0.00 0.86
2681 9367 1.696063 GTGTGTCTACCCCCGCTATA 58.304 55.000 0.00 0.00 0.00 1.31
2682 9368 1.389609 CGTGTGTCTACCCCCGCTAT 61.390 60.000 0.00 0.00 0.00 2.97
2683 9369 2.048023 CGTGTGTCTACCCCCGCTA 61.048 63.158 0.00 0.00 0.00 4.26
2684 9370 3.379445 CGTGTGTCTACCCCCGCT 61.379 66.667 0.00 0.00 0.00 5.52
2685 9371 2.718073 ATCGTGTGTCTACCCCCGC 61.718 63.158 0.00 0.00 0.00 6.13
2686 9372 1.141019 CATCGTGTGTCTACCCCCG 59.859 63.158 0.00 0.00 0.00 5.73
2687 9373 1.477553 TACATCGTGTGTCTACCCCC 58.522 55.000 0.00 0.00 42.29 5.40
2688 9374 2.417787 GGTTACATCGTGTGTCTACCCC 60.418 54.545 12.48 0.00 42.29 4.95
2689 9375 2.494870 AGGTTACATCGTGTGTCTACCC 59.505 50.000 16.46 7.75 42.39 3.69
2690 9376 3.863142 AGGTTACATCGTGTGTCTACC 57.137 47.619 14.22 14.22 42.04 3.18
2691 9377 4.738740 GCATAGGTTACATCGTGTGTCTAC 59.261 45.833 0.00 1.46 42.29 2.59
2692 9378 4.202080 GGCATAGGTTACATCGTGTGTCTA 60.202 45.833 0.00 0.00 42.29 2.59
2693 9379 3.430374 GGCATAGGTTACATCGTGTGTCT 60.430 47.826 0.00 0.00 42.29 3.41
2694 9380 2.864343 GGCATAGGTTACATCGTGTGTC 59.136 50.000 0.00 0.00 42.29 3.67
2695 9381 2.235155 TGGCATAGGTTACATCGTGTGT 59.765 45.455 1.58 1.87 44.95 3.72
2696 9382 2.899976 TGGCATAGGTTACATCGTGTG 58.100 47.619 1.58 0.00 0.00 3.82
2697 9383 3.267483 GTTGGCATAGGTTACATCGTGT 58.733 45.455 0.00 0.00 0.00 4.49
2698 9384 3.266636 TGTTGGCATAGGTTACATCGTG 58.733 45.455 0.00 0.00 0.00 4.35
2699 9385 3.620427 TGTTGGCATAGGTTACATCGT 57.380 42.857 0.00 0.00 0.00 3.73
2700 9386 6.801539 ATTATGTTGGCATAGGTTACATCG 57.198 37.500 3.66 0.00 38.64 3.84
2701 9387 7.390440 TGCTATTATGTTGGCATAGGTTACATC 59.610 37.037 3.66 0.00 38.64 3.06
2702 9388 7.174946 GTGCTATTATGTTGGCATAGGTTACAT 59.825 37.037 5.64 5.64 38.64 2.29
2703 9389 6.485313 GTGCTATTATGTTGGCATAGGTTACA 59.515 38.462 0.00 0.00 38.64 2.41
2704 9390 6.072673 GGTGCTATTATGTTGGCATAGGTTAC 60.073 42.308 0.00 0.00 38.64 2.50
2705 9391 6.001460 GGTGCTATTATGTTGGCATAGGTTA 58.999 40.000 0.00 0.00 38.64 2.85
2706 9392 4.827284 GGTGCTATTATGTTGGCATAGGTT 59.173 41.667 0.00 0.00 38.64 3.50
2707 9393 4.398319 GGTGCTATTATGTTGGCATAGGT 58.602 43.478 0.00 0.00 38.64 3.08
2708 9394 3.436704 CGGTGCTATTATGTTGGCATAGG 59.563 47.826 0.00 0.00 38.64 2.57
2709 9395 3.436704 CCGGTGCTATTATGTTGGCATAG 59.563 47.826 0.00 0.00 38.64 2.23
2710 9396 3.071747 TCCGGTGCTATTATGTTGGCATA 59.928 43.478 0.00 0.00 37.05 3.14
2711 9397 2.158682 TCCGGTGCTATTATGTTGGCAT 60.159 45.455 0.00 0.00 37.05 4.40
2712 9398 1.210722 TCCGGTGCTATTATGTTGGCA 59.789 47.619 0.00 0.00 0.00 4.92
2713 9399 1.961793 TCCGGTGCTATTATGTTGGC 58.038 50.000 0.00 0.00 0.00 4.52
2714 9400 2.286833 CGTTCCGGTGCTATTATGTTGG 59.713 50.000 0.00 0.00 0.00 3.77
2715 9401 2.286184 GCGTTCCGGTGCTATTATGTTG 60.286 50.000 0.00 0.00 0.00 3.33
2716 9402 1.937899 GCGTTCCGGTGCTATTATGTT 59.062 47.619 0.00 0.00 0.00 2.71
2717 9403 1.134640 TGCGTTCCGGTGCTATTATGT 60.135 47.619 15.08 0.00 0.00 2.29
2718 9404 1.526887 CTGCGTTCCGGTGCTATTATG 59.473 52.381 15.08 0.00 0.00 1.90
2719 9405 1.540363 CCTGCGTTCCGGTGCTATTAT 60.540 52.381 15.08 0.00 0.00 1.28
2720 9406 0.179094 CCTGCGTTCCGGTGCTATTA 60.179 55.000 15.08 0.00 0.00 0.98
2721 9407 1.449601 CCTGCGTTCCGGTGCTATT 60.450 57.895 15.08 0.00 0.00 1.73
2722 9408 2.186903 CCTGCGTTCCGGTGCTAT 59.813 61.111 15.08 0.00 0.00 2.97
2723 9409 4.077184 CCCTGCGTTCCGGTGCTA 62.077 66.667 15.08 3.84 0.00 3.49
2726 9412 4.323477 TTCCCCTGCGTTCCGGTG 62.323 66.667 0.00 0.00 0.00 4.94
2727 9413 4.016706 CTTCCCCTGCGTTCCGGT 62.017 66.667 0.00 0.00 0.00 5.28
2751 9437 3.434319 CTGGACACCGGCACATGC 61.434 66.667 0.00 0.00 41.14 4.06
2752 9438 2.747460 CCTGGACACCGGCACATG 60.747 66.667 0.00 0.00 0.00 3.21
2753 9439 4.033776 CCCTGGACACCGGCACAT 62.034 66.667 0.00 0.00 0.00 3.21
2775 9461 2.235016 CGCTACAATACCGCACCCG 61.235 63.158 0.00 0.00 0.00 5.28
2776 9462 1.885850 CCGCTACAATACCGCACCC 60.886 63.158 0.00 0.00 0.00 4.61
2777 9463 1.153509 ACCGCTACAATACCGCACC 60.154 57.895 0.00 0.00 0.00 5.01
2778 9464 0.738412 ACACCGCTACAATACCGCAC 60.738 55.000 0.00 0.00 0.00 5.34
2779 9465 0.458889 GACACCGCTACAATACCGCA 60.459 55.000 0.00 0.00 0.00 5.69
2780 9466 0.458889 TGACACCGCTACAATACCGC 60.459 55.000 0.00 0.00 0.00 5.68
2781 9467 1.274596 GTGACACCGCTACAATACCG 58.725 55.000 0.00 0.00 0.00 4.02
2782 9468 1.274596 CGTGACACCGCTACAATACC 58.725 55.000 0.00 0.00 0.00 2.73
2783 9469 1.135315 TCCGTGACACCGCTACAATAC 60.135 52.381 0.00 0.00 0.00 1.89
2784 9470 1.133598 CTCCGTGACACCGCTACAATA 59.866 52.381 0.00 0.00 0.00 1.90
2785 9471 0.108804 CTCCGTGACACCGCTACAAT 60.109 55.000 0.00 0.00 0.00 2.71
2786 9472 1.174078 TCTCCGTGACACCGCTACAA 61.174 55.000 0.00 0.00 0.00 2.41
2787 9473 1.583495 CTCTCCGTGACACCGCTACA 61.583 60.000 0.00 0.00 0.00 2.74
2788 9474 1.136984 CTCTCCGTGACACCGCTAC 59.863 63.158 0.00 0.00 0.00 3.58
2789 9475 2.044555 CCTCTCCGTGACACCGCTA 61.045 63.158 0.00 0.00 0.00 4.26
2790 9476 3.374402 CCTCTCCGTGACACCGCT 61.374 66.667 0.00 0.00 0.00 5.52
2791 9477 3.343788 CTCCTCTCCGTGACACCGC 62.344 68.421 0.00 0.00 0.00 5.68
2792 9478 2.878429 CTCCTCTCCGTGACACCG 59.122 66.667 0.00 0.00 0.00 4.94
2793 9479 2.574399 GCTCCTCTCCGTGACACC 59.426 66.667 0.00 0.00 0.00 4.16
2794 9480 2.179517 CGCTCCTCTCCGTGACAC 59.820 66.667 0.00 0.00 0.00 3.67
2795 9481 3.749064 GCGCTCCTCTCCGTGACA 61.749 66.667 0.00 0.00 0.00 3.58
2796 9482 4.500116 GGCGCTCCTCTCCGTGAC 62.500 72.222 7.64 0.00 0.00 3.67
2799 9485 3.733507 TATGGGCGCTCCTCTCCGT 62.734 63.158 3.94 0.68 36.20 4.69
2800 9486 2.912542 TATGGGCGCTCCTCTCCG 60.913 66.667 3.94 0.00 36.20 4.63
2801 9487 1.811645 GACTATGGGCGCTCCTCTCC 61.812 65.000 3.94 0.00 36.20 3.71
2802 9488 1.109920 TGACTATGGGCGCTCCTCTC 61.110 60.000 3.94 0.00 36.20 3.20
2803 9489 1.075970 TGACTATGGGCGCTCCTCT 60.076 57.895 3.94 0.46 36.20 3.69
2804 9490 1.365633 CTGACTATGGGCGCTCCTC 59.634 63.158 3.94 0.00 36.20 3.71
2805 9491 2.136878 CCTGACTATGGGCGCTCCT 61.137 63.158 3.94 0.00 36.20 3.69
2806 9492 2.423446 CCTGACTATGGGCGCTCC 59.577 66.667 3.94 6.36 0.00 4.70
2807 9493 2.280457 GCCTGACTATGGGCGCTC 60.280 66.667 7.64 2.47 38.91 5.03
2812 9498 3.560251 CCGGGGCCTGACTATGGG 61.560 72.222 15.75 0.00 0.00 4.00
2813 9499 3.560251 CCCGGGGCCTGACTATGG 61.560 72.222 14.71 1.36 0.00 2.74
2814 9500 3.560251 CCCCGGGGCCTGACTATG 61.560 72.222 31.01 0.00 0.00 2.23
2815 9501 3.115017 ATCCCCGGGGCCTGACTAT 62.115 63.158 36.68 18.72 34.68 2.12
2816 9502 3.774336 ATCCCCGGGGCCTGACTA 61.774 66.667 36.68 16.98 34.68 2.59
2819 9505 4.096816 TACATCCCCGGGGCCTGA 62.097 66.667 35.53 22.46 34.68 3.86
2820 9506 3.560251 CTACATCCCCGGGGCCTG 61.560 72.222 36.68 32.77 34.68 4.85
2824 9510 0.914417 ATATGGCTACATCCCCGGGG 60.914 60.000 35.80 35.80 38.53 5.73
2825 9511 0.541863 GATATGGCTACATCCCCGGG 59.458 60.000 15.80 15.80 38.53 5.73
2826 9512 0.175760 CGATATGGCTACATCCCCGG 59.824 60.000 0.00 0.00 38.53 5.73
2827 9513 0.175760 CCGATATGGCTACATCCCCG 59.824 60.000 0.00 0.00 38.53 5.73
2828 9514 1.066143 CACCGATATGGCTACATCCCC 60.066 57.143 0.00 0.00 43.94 4.81
2829 9515 1.899814 TCACCGATATGGCTACATCCC 59.100 52.381 0.00 0.00 43.94 3.85
2830 9516 3.244078 TGTTCACCGATATGGCTACATCC 60.244 47.826 0.00 0.00 43.94 3.51
2831 9517 3.990092 TGTTCACCGATATGGCTACATC 58.010 45.455 0.00 0.00 43.94 3.06
2832 9518 4.569943 GATGTTCACCGATATGGCTACAT 58.430 43.478 0.00 0.00 43.94 2.29
2833 9519 3.552068 CGATGTTCACCGATATGGCTACA 60.552 47.826 0.00 0.00 43.94 2.74
2834 9520 2.987149 CGATGTTCACCGATATGGCTAC 59.013 50.000 0.00 0.00 43.94 3.58
2835 9521 2.626266 ACGATGTTCACCGATATGGCTA 59.374 45.455 0.00 0.00 43.94 3.93
2836 9522 1.412710 ACGATGTTCACCGATATGGCT 59.587 47.619 0.00 0.00 43.94 4.75
2837 9523 1.865865 ACGATGTTCACCGATATGGC 58.134 50.000 0.00 0.00 43.94 4.40
2838 9524 4.806775 TGTTAACGATGTTCACCGATATGG 59.193 41.667 0.26 0.00 46.41 2.74
2839 9525 5.959652 TGTTAACGATGTTCACCGATATG 57.040 39.130 0.26 0.00 0.00 1.78
2840 9526 6.971527 TTTGTTAACGATGTTCACCGATAT 57.028 33.333 0.26 0.00 0.00 1.63
2841 9527 6.814644 AGATTTGTTAACGATGTTCACCGATA 59.185 34.615 0.26 0.00 0.00 2.92
2842 9528 5.642063 AGATTTGTTAACGATGTTCACCGAT 59.358 36.000 0.26 0.00 0.00 4.18
2843 9529 4.992319 AGATTTGTTAACGATGTTCACCGA 59.008 37.500 0.26 0.00 0.00 4.69
2844 9530 5.277601 AGATTTGTTAACGATGTTCACCG 57.722 39.130 0.26 0.00 0.00 4.94
2845 9531 5.313623 CGAGATTTGTTAACGATGTTCACC 58.686 41.667 0.26 0.00 0.00 4.02
2846 9532 5.107220 ACCGAGATTTGTTAACGATGTTCAC 60.107 40.000 0.26 0.00 0.00 3.18
2847 9533 4.992319 ACCGAGATTTGTTAACGATGTTCA 59.008 37.500 0.26 0.00 0.00 3.18
2848 9534 5.107220 ACACCGAGATTTGTTAACGATGTTC 60.107 40.000 0.26 0.00 25.41 3.18
2849 9535 4.753107 ACACCGAGATTTGTTAACGATGTT 59.247 37.500 0.26 0.00 25.41 2.71
2850 9536 4.312443 ACACCGAGATTTGTTAACGATGT 58.688 39.130 0.26 0.00 0.00 3.06
2851 9537 4.490319 CGACACCGAGATTTGTTAACGATG 60.490 45.833 0.26 0.00 38.22 3.84
2852 9538 3.611113 CGACACCGAGATTTGTTAACGAT 59.389 43.478 0.26 0.00 38.22 3.73
2853 9539 2.981805 CGACACCGAGATTTGTTAACGA 59.018 45.455 0.26 0.00 38.22 3.85
2854 9540 2.727798 ACGACACCGAGATTTGTTAACG 59.272 45.455 0.26 0.00 39.50 3.18
2855 9541 3.663493 GCACGACACCGAGATTTGTTAAC 60.663 47.826 0.00 0.00 39.50 2.01
2856 9542 2.477375 GCACGACACCGAGATTTGTTAA 59.523 45.455 0.00 0.00 39.50 2.01
2857 9543 2.063266 GCACGACACCGAGATTTGTTA 58.937 47.619 0.00 0.00 39.50 2.41
2858 9544 0.865769 GCACGACACCGAGATTTGTT 59.134 50.000 0.00 0.00 39.50 2.83
2859 9545 0.033504 AGCACGACACCGAGATTTGT 59.966 50.000 0.00 0.00 39.50 2.83
2860 9546 0.716108 GAGCACGACACCGAGATTTG 59.284 55.000 0.00 0.00 39.50 2.32
2861 9547 0.732880 CGAGCACGACACCGAGATTT 60.733 55.000 0.00 0.00 42.66 2.17
2862 9548 1.154016 CGAGCACGACACCGAGATT 60.154 57.895 0.00 0.00 42.66 2.40
2863 9549 2.333417 ACGAGCACGACACCGAGAT 61.333 57.895 11.40 0.00 42.66 2.75
2864 9550 2.976350 ACGAGCACGACACCGAGA 60.976 61.111 11.40 0.00 42.66 4.04
2865 9551 2.801162 CACGAGCACGACACCGAG 60.801 66.667 11.40 0.00 42.66 4.63
2866 9552 3.588906 ACACGAGCACGACACCGA 61.589 61.111 11.40 0.00 42.66 4.69
2867 9553 3.394874 CACACGAGCACGACACCG 61.395 66.667 11.40 0.00 42.66 4.94
2868 9554 0.944311 AATCACACGAGCACGACACC 60.944 55.000 11.40 0.00 42.66 4.16
2869 9555 0.161658 CAATCACACGAGCACGACAC 59.838 55.000 11.40 0.00 42.66 3.67
2870 9556 1.556591 GCAATCACACGAGCACGACA 61.557 55.000 11.40 0.00 42.66 4.35
2871 9557 1.130613 GCAATCACACGAGCACGAC 59.869 57.895 11.40 0.00 42.66 4.34
2872 9558 0.599991 AAGCAATCACACGAGCACGA 60.600 50.000 11.40 0.00 42.66 4.35
2873 9559 0.451628 CAAGCAATCACACGAGCACG 60.452 55.000 0.76 0.76 45.75 5.34
2874 9560 0.867746 TCAAGCAATCACACGAGCAC 59.132 50.000 0.00 0.00 0.00 4.40
2875 9561 1.733912 GATCAAGCAATCACACGAGCA 59.266 47.619 0.00 0.00 0.00 4.26
2876 9562 1.063174 GGATCAAGCAATCACACGAGC 59.937 52.381 0.00 0.00 0.00 5.03
2877 9563 2.606725 GAGGATCAAGCAATCACACGAG 59.393 50.000 0.00 0.00 33.17 4.18
2878 9564 2.621338 GAGGATCAAGCAATCACACGA 58.379 47.619 0.00 0.00 33.17 4.35
2879 9565 1.325640 CGAGGATCAAGCAATCACACG 59.674 52.381 0.00 0.00 33.17 4.49
2880 9566 1.667724 CCGAGGATCAAGCAATCACAC 59.332 52.381 0.00 0.00 33.17 3.82
2881 9567 1.554617 TCCGAGGATCAAGCAATCACA 59.445 47.619 0.00 0.00 33.17 3.58
2882 9568 2.315925 TCCGAGGATCAAGCAATCAC 57.684 50.000 0.00 0.00 33.17 3.06
2883 9569 2.435437 TCATCCGAGGATCAAGCAATCA 59.565 45.455 0.85 0.00 31.62 2.57
2884 9570 3.117491 TCATCCGAGGATCAAGCAATC 57.883 47.619 0.85 0.00 31.62 2.67
2885 9571 3.784511 ATCATCCGAGGATCAAGCAAT 57.215 42.857 0.85 0.00 31.62 3.56
2886 9572 3.118298 TCAATCATCCGAGGATCAAGCAA 60.118 43.478 0.85 0.00 31.62 3.91
2887 9573 2.435437 TCAATCATCCGAGGATCAAGCA 59.565 45.455 0.85 0.00 31.62 3.91
2888 9574 2.805099 GTCAATCATCCGAGGATCAAGC 59.195 50.000 0.85 0.00 31.62 4.01
2889 9575 3.055591 CGTCAATCATCCGAGGATCAAG 58.944 50.000 0.85 0.00 31.62 3.02
2890 9576 2.224042 CCGTCAATCATCCGAGGATCAA 60.224 50.000 0.85 0.00 31.62 2.57
2891 9577 1.341209 CCGTCAATCATCCGAGGATCA 59.659 52.381 0.85 0.00 31.62 2.92
2892 9578 1.613925 TCCGTCAATCATCCGAGGATC 59.386 52.381 0.85 0.00 31.62 3.36
2893 9579 1.615883 CTCCGTCAATCATCCGAGGAT 59.384 52.381 0.00 0.00 34.81 3.24
2894 9580 1.032794 CTCCGTCAATCATCCGAGGA 58.967 55.000 0.00 0.00 0.00 3.71
2895 9581 0.747255 ACTCCGTCAATCATCCGAGG 59.253 55.000 0.00 0.00 0.00 4.63
2896 9582 1.845266 CACTCCGTCAATCATCCGAG 58.155 55.000 0.00 0.00 0.00 4.63
2897 9583 0.179111 GCACTCCGTCAATCATCCGA 60.179 55.000 0.00 0.00 0.00 4.55
2898 9584 1.154205 GGCACTCCGTCAATCATCCG 61.154 60.000 0.00 0.00 0.00 4.18
2899 9585 0.179000 AGGCACTCCGTCAATCATCC 59.821 55.000 0.00 0.00 37.47 3.51
2900 9586 3.768633 AGGCACTCCGTCAATCATC 57.231 52.632 0.00 0.00 37.47 2.92
2913 9599 6.128117 TGTTTGTTAGAATAAATCCGAGGCAC 60.128 38.462 0.00 0.00 0.00 5.01
2914 9600 5.941058 TGTTTGTTAGAATAAATCCGAGGCA 59.059 36.000 0.00 0.00 0.00 4.75
2915 9601 6.431198 TGTTTGTTAGAATAAATCCGAGGC 57.569 37.500 0.00 0.00 0.00 4.70
2916 9602 6.093495 TGCTGTTTGTTAGAATAAATCCGAGG 59.907 38.462 0.00 0.00 0.00 4.63
2917 9603 7.072177 TGCTGTTTGTTAGAATAAATCCGAG 57.928 36.000 0.00 0.00 0.00 4.63
2918 9604 7.120579 ACATGCTGTTTGTTAGAATAAATCCGA 59.879 33.333 0.00 0.00 0.00 4.55
2919 9605 7.250569 ACATGCTGTTTGTTAGAATAAATCCG 58.749 34.615 0.00 0.00 0.00 4.18
2920 9606 8.986477 AACATGCTGTTTGTTAGAATAAATCC 57.014 30.769 0.00 0.00 37.26 3.01
2921 9607 9.076596 GGAACATGCTGTTTGTTAGAATAAATC 57.923 33.333 0.00 0.00 41.28 2.17
2922 9608 8.584157 TGGAACATGCTGTTTGTTAGAATAAAT 58.416 29.630 0.00 0.00 41.28 1.40
2923 9609 7.946207 TGGAACATGCTGTTTGTTAGAATAAA 58.054 30.769 0.00 0.00 41.28 1.40
2924 9610 7.517614 TGGAACATGCTGTTTGTTAGAATAA 57.482 32.000 0.00 0.00 41.28 1.40
2925 9611 7.517614 TTGGAACATGCTGTTTGTTAGAATA 57.482 32.000 0.00 0.00 41.28 1.75
2926 9612 6.403866 TTGGAACATGCTGTTTGTTAGAAT 57.596 33.333 0.00 0.00 41.28 2.40
2927 9613 5.843673 TTGGAACATGCTGTTTGTTAGAA 57.156 34.783 0.00 0.00 41.28 2.10
2928 9614 5.843673 TTTGGAACATGCTGTTTGTTAGA 57.156 34.783 0.00 0.00 41.28 2.10
2929 9615 6.564499 GCATTTTGGAACATGCTGTTTGTTAG 60.564 38.462 3.71 0.00 41.28 2.34
2930 9616 5.236047 GCATTTTGGAACATGCTGTTTGTTA 59.764 36.000 3.71 0.00 41.28 2.41
2931 9617 4.035441 GCATTTTGGAACATGCTGTTTGTT 59.965 37.500 3.71 0.00 41.28 2.83
2932 9618 3.560896 GCATTTTGGAACATGCTGTTTGT 59.439 39.130 3.71 0.00 41.28 2.83
2933 9619 4.136517 GCATTTTGGAACATGCTGTTTG 57.863 40.909 3.71 0.00 41.28 2.93
2939 9625 1.275856 TGGGAGCATTTTGGAACATGC 59.724 47.619 2.83 2.83 45.30 4.06
2972 9658 8.585471 ACCATTCATTATGTCAATTTCTCTGT 57.415 30.769 0.00 0.00 31.99 3.41
2987 9673 8.657387 TTTCCACTTCCAAATACCATTCATTA 57.343 30.769 0.00 0.00 0.00 1.90
3081 9768 9.856488 CCTTATACGATACACATTACTAAGCAT 57.144 33.333 0.00 0.00 0.00 3.79
3082 9769 7.811236 GCCTTATACGATACACATTACTAAGCA 59.189 37.037 0.00 0.00 0.00 3.91
3216 9904 1.274728 AGATCGATGAGCAGCATACCC 59.725 52.381 0.54 0.00 37.34 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.