Multiple sequence alignment - TraesCS3D01G012700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G012700 chr3D 100.000 6411 0 0 1 6411 4403930 4410340 0.000000e+00 11839.0
1 TraesCS3D01G012700 chr3D 76.417 1429 259 51 3619 5002 4194521 4195916 0.000000e+00 701.0
2 TraesCS3D01G012700 chr3D 92.490 253 19 0 1 253 381007051 381007303 4.720000e-96 363.0
3 TraesCS3D01G012700 chr3D 92.490 253 18 1 1 253 378565096 378564845 1.700000e-95 361.0
4 TraesCS3D01G012700 chr3A 96.603 5946 154 24 466 6376 10212895 10218827 0.000000e+00 9817.0
5 TraesCS3D01G012700 chr3A 89.140 709 57 9 4927 5629 10577905 10577211 0.000000e+00 865.0
6 TraesCS3D01G012700 chr3A 76.184 1520 274 54 3539 5002 9853899 9855386 0.000000e+00 721.0
7 TraesCS3D01G012700 chr3A 92.893 394 27 1 4418 4811 10578344 10577952 7.210000e-159 571.0
8 TraesCS3D01G012700 chr3A 77.855 858 155 26 4576 5423 9933588 9934420 3.450000e-137 499.0
9 TraesCS3D01G012700 chr3A 85.246 366 38 14 6002 6353 10533633 10533270 4.720000e-96 363.0
10 TraesCS3D01G012700 chr3A 79.610 461 66 11 859 1315 10165989 10166425 8.080000e-79 305.0
11 TraesCS3D01G012700 chr3A 93.048 187 8 2 253 436 10212502 10212686 1.060000e-67 268.0
12 TraesCS3D01G012700 chr3A 81.308 321 35 16 1001 1315 9931696 9931997 2.990000e-58 237.0
13 TraesCS3D01G012700 chrUn 74.678 1785 354 74 3611 5354 35374067 35372340 0.000000e+00 702.0
14 TraesCS3D01G012700 chr3B 74.678 1785 354 74 3611 5354 6556989 6558716 0.000000e+00 702.0
15 TraesCS3D01G012700 chr3B 75.309 1535 294 56 3606 5090 6679120 6680619 0.000000e+00 656.0
16 TraesCS3D01G012700 chr3B 93.496 246 16 0 4 249 494171455 494171700 3.650000e-97 366.0
17 TraesCS3D01G012700 chr3B 86.164 318 38 5 1001 1315 6677121 6677435 7.960000e-89 339.0
18 TraesCS3D01G012700 chr7D 78.877 748 120 33 3616 4341 499886347 499887078 7.520000e-129 472.0
19 TraesCS3D01G012700 chr7A 77.748 737 120 34 3616 4330 565799060 565799774 4.630000e-111 412.0
20 TraesCS3D01G012700 chr7A 80.000 200 34 6 3188 3386 676057855 676057661 6.700000e-30 143.0
21 TraesCS3D01G012700 chr5B 92.913 254 18 0 1 254 42152416 42152163 2.820000e-98 370.0
22 TraesCS3D01G012700 chr6D 92.490 253 19 0 1 253 362701655 362701907 4.720000e-96 363.0
23 TraesCS3D01G012700 chr4D 92.520 254 18 1 1 253 108206798 108206545 4.720000e-96 363.0
24 TraesCS3D01G012700 chr4D 81.752 137 21 4 3358 3491 4127266 4127401 1.890000e-20 111.0
25 TraesCS3D01G012700 chr1D 92.800 250 18 0 3 252 402302530 402302779 4.720000e-96 363.0
26 TraesCS3D01G012700 chr1B 92.490 253 18 1 1 253 339361534 339361283 1.700000e-95 361.0
27 TraesCS3D01G012700 chr1B 92.430 251 19 0 1 251 669905212 669904962 6.110000e-95 359.0
28 TraesCS3D01G012700 chr1B 89.286 56 6 0 3278 3333 640026928 640026873 3.210000e-08 71.3
29 TraesCS3D01G012700 chr7B 84.324 185 27 2 4147 4330 527858603 527858786 5.110000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G012700 chr3D 4403930 4410340 6410 False 11839.0 11839 100.0000 1 6411 1 chr3D.!!$F2 6410
1 TraesCS3D01G012700 chr3D 4194521 4195916 1395 False 701.0 701 76.4170 3619 5002 1 chr3D.!!$F1 1383
2 TraesCS3D01G012700 chr3A 10212502 10218827 6325 False 5042.5 9817 94.8255 253 6376 2 chr3A.!!$F4 6123
3 TraesCS3D01G012700 chr3A 9853899 9855386 1487 False 721.0 721 76.1840 3539 5002 1 chr3A.!!$F1 1463
4 TraesCS3D01G012700 chr3A 10577211 10578344 1133 True 718.0 865 91.0165 4418 5629 2 chr3A.!!$R2 1211
5 TraesCS3D01G012700 chr3A 9931696 9934420 2724 False 368.0 499 79.5815 1001 5423 2 chr3A.!!$F3 4422
6 TraesCS3D01G012700 chrUn 35372340 35374067 1727 True 702.0 702 74.6780 3611 5354 1 chrUn.!!$R1 1743
7 TraesCS3D01G012700 chr3B 6556989 6558716 1727 False 702.0 702 74.6780 3611 5354 1 chr3B.!!$F1 1743
8 TraesCS3D01G012700 chr3B 6677121 6680619 3498 False 497.5 656 80.7365 1001 5090 2 chr3B.!!$F3 4089
9 TraesCS3D01G012700 chr7D 499886347 499887078 731 False 472.0 472 78.8770 3616 4341 1 chr7D.!!$F1 725
10 TraesCS3D01G012700 chr7A 565799060 565799774 714 False 412.0 412 77.7480 3616 4330 1 chr7A.!!$F1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.036306 CCTGGACTGGGTTACACACC 59.964 60.000 0.00 0.0 46.46 4.16 F
830 1014 0.036306 AACGGATCGAGTTGCCCTTT 59.964 50.000 4.66 0.0 0.00 3.11 F
1619 1854 0.467290 GGATGGCGCTCCCCAATTTA 60.467 55.000 7.64 0.0 38.61 1.40 F
1621 1856 0.468029 ATGGCGCTCCCCAATTTAGG 60.468 55.000 7.64 0.0 38.61 2.69 F
2556 2885 2.375174 AGTGTTCCTCCCTTATGCACAA 59.625 45.455 0.00 0.0 0.00 3.33 F
3812 4578 0.951558 GTGGTTGGTGGTGTGTCATC 59.048 55.000 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 2447 0.384309 TCTACTCGCAAGCCCATACG 59.616 55.000 0.00 0.00 37.18 3.06 R
2413 2742 2.223994 GGCTAAACCCCATCGACTAGTC 60.224 54.545 13.18 13.18 0.00 2.59 R
3284 4018 0.179176 TTCCAAATTGATTCCGCGCG 60.179 50.000 25.67 25.67 0.00 6.86 R
3285 4019 1.653609 GTTTCCAAATTGATTCCGCGC 59.346 47.619 0.00 0.00 0.00 6.86 R
4252 5064 0.663153 GTTATGATGCTTGGGCGGAC 59.337 55.000 0.00 0.00 42.25 4.79 R
5790 6709 0.530650 TCTCCGATCCGCATGCTTTC 60.531 55.000 17.13 8.58 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.279743 GATGCCCCATCCAAGCCA 59.720 61.111 0.00 0.00 35.07 4.75
19 20 2.042639 ATGCCCCATCCAAGCCAC 60.043 61.111 0.00 0.00 0.00 5.01
20 21 2.859525 GATGCCCCATCCAAGCCACA 62.860 60.000 0.00 0.00 35.07 4.17
21 22 2.283821 GCCCCATCCAAGCCACAA 60.284 61.111 0.00 0.00 0.00 3.33
22 23 1.686800 GCCCCATCCAAGCCACAAT 60.687 57.895 0.00 0.00 0.00 2.71
23 24 0.396974 GCCCCATCCAAGCCACAATA 60.397 55.000 0.00 0.00 0.00 1.90
24 25 1.402787 CCCCATCCAAGCCACAATAC 58.597 55.000 0.00 0.00 0.00 1.89
25 26 1.402787 CCCATCCAAGCCACAATACC 58.597 55.000 0.00 0.00 0.00 2.73
26 27 1.063717 CCCATCCAAGCCACAATACCT 60.064 52.381 0.00 0.00 0.00 3.08
27 28 2.026641 CCATCCAAGCCACAATACCTG 58.973 52.381 0.00 0.00 0.00 4.00
28 29 2.026641 CATCCAAGCCACAATACCTGG 58.973 52.381 0.00 0.00 0.00 4.45
29 30 1.367346 TCCAAGCCACAATACCTGGA 58.633 50.000 0.00 0.00 0.00 3.86
30 31 1.004277 TCCAAGCCACAATACCTGGAC 59.996 52.381 0.00 0.00 0.00 4.02
31 32 1.004745 CCAAGCCACAATACCTGGACT 59.995 52.381 0.00 0.00 0.00 3.85
32 33 2.086869 CAAGCCACAATACCTGGACTG 58.913 52.381 0.00 0.00 0.00 3.51
33 34 0.620556 AGCCACAATACCTGGACTGG 59.379 55.000 0.00 0.00 0.00 4.00
34 35 0.394352 GCCACAATACCTGGACTGGG 60.394 60.000 0.00 0.00 0.00 4.45
35 36 0.991920 CCACAATACCTGGACTGGGT 59.008 55.000 0.00 0.00 40.53 4.51
36 37 1.354368 CCACAATACCTGGACTGGGTT 59.646 52.381 0.00 0.00 38.19 4.11
37 38 2.574369 CCACAATACCTGGACTGGGTTA 59.426 50.000 0.00 0.00 38.19 2.85
38 39 3.606687 CACAATACCTGGACTGGGTTAC 58.393 50.000 0.00 0.00 38.19 2.50
39 40 3.008594 CACAATACCTGGACTGGGTTACA 59.991 47.826 0.00 0.00 38.19 2.41
40 41 3.008704 ACAATACCTGGACTGGGTTACAC 59.991 47.826 0.00 0.00 38.19 2.90
41 42 2.402182 TACCTGGACTGGGTTACACA 57.598 50.000 0.00 0.00 38.19 3.72
42 43 0.763035 ACCTGGACTGGGTTACACAC 59.237 55.000 0.00 0.00 32.46 3.82
43 44 0.036306 CCTGGACTGGGTTACACACC 59.964 60.000 0.00 0.00 46.46 4.16
50 51 4.318949 GGTTACACACCGGCCCGT 62.319 66.667 0.00 0.00 35.12 5.28
51 52 2.739671 GTTACACACCGGCCCGTC 60.740 66.667 0.00 0.00 0.00 4.79
52 53 4.360964 TTACACACCGGCCCGTCG 62.361 66.667 0.00 0.00 0.00 5.12
61 62 3.423154 GGCCCGTCGCACTTTCAG 61.423 66.667 0.00 0.00 40.31 3.02
62 63 2.665185 GCCCGTCGCACTTTCAGT 60.665 61.111 0.00 0.00 37.47 3.41
64 65 2.317609 CCCGTCGCACTTTCAGTGG 61.318 63.158 6.05 0.00 46.01 4.00
65 66 1.300620 CCGTCGCACTTTCAGTGGA 60.301 57.895 6.05 0.00 46.01 4.02
66 67 1.557443 CCGTCGCACTTTCAGTGGAC 61.557 60.000 6.05 9.73 46.01 4.02
67 68 0.874175 CGTCGCACTTTCAGTGGACA 60.874 55.000 17.94 0.00 46.01 4.02
68 69 0.582005 GTCGCACTTTCAGTGGACAC 59.418 55.000 15.17 0.00 46.01 3.67
69 70 0.531974 TCGCACTTTCAGTGGACACC 60.532 55.000 6.05 0.00 46.01 4.16
70 71 0.813610 CGCACTTTCAGTGGACACCA 60.814 55.000 6.05 0.00 46.01 4.17
83 84 2.253154 CACCACATGTGCACGCTG 59.747 61.111 20.81 14.50 38.34 5.18
84 85 3.663176 ACCACATGTGCACGCTGC 61.663 61.111 20.81 3.44 45.29 5.25
96 97 3.741476 CGCTGCAAGGGCCTTCAC 61.741 66.667 17.86 12.42 41.12 3.18
97 98 3.376918 GCTGCAAGGGCCTTCACC 61.377 66.667 17.86 8.47 40.13 4.02
98 99 2.437897 CTGCAAGGGCCTTCACCT 59.562 61.111 17.86 0.00 40.96 4.00
99 100 1.676967 CTGCAAGGGCCTTCACCTC 60.677 63.158 17.86 4.04 37.35 3.85
100 101 2.361737 GCAAGGGCCTTCACCTCC 60.362 66.667 17.86 0.00 37.35 4.30
101 102 2.911926 GCAAGGGCCTTCACCTCCT 61.912 63.158 17.86 0.00 37.35 3.69
102 103 1.770324 CAAGGGCCTTCACCTCCTT 59.230 57.895 17.86 0.00 39.93 3.36
103 104 0.322906 CAAGGGCCTTCACCTCCTTC 60.323 60.000 17.86 0.00 37.50 3.46
104 105 0.772124 AAGGGCCTTCACCTCCTTCA 60.772 55.000 14.48 0.00 37.35 3.02
105 106 0.551131 AGGGCCTTCACCTCCTTCAT 60.551 55.000 0.00 0.00 31.01 2.57
106 107 0.106967 GGGCCTTCACCTCCTTCATC 60.107 60.000 0.84 0.00 0.00 2.92
107 108 0.106967 GGCCTTCACCTCCTTCATCC 60.107 60.000 0.00 0.00 0.00 3.51
108 109 0.620556 GCCTTCACCTCCTTCATCCA 59.379 55.000 0.00 0.00 0.00 3.41
109 110 1.213926 GCCTTCACCTCCTTCATCCAT 59.786 52.381 0.00 0.00 0.00 3.41
110 111 2.747799 GCCTTCACCTCCTTCATCCATC 60.748 54.545 0.00 0.00 0.00 3.51
111 112 2.484417 CCTTCACCTCCTTCATCCATCG 60.484 54.545 0.00 0.00 0.00 3.84
112 113 2.159179 TCACCTCCTTCATCCATCGA 57.841 50.000 0.00 0.00 0.00 3.59
113 114 2.682594 TCACCTCCTTCATCCATCGAT 58.317 47.619 0.00 0.00 0.00 3.59
114 115 2.630098 TCACCTCCTTCATCCATCGATC 59.370 50.000 0.00 0.00 0.00 3.69
115 116 1.974236 ACCTCCTTCATCCATCGATCC 59.026 52.381 0.00 0.00 0.00 3.36
116 117 1.973515 CCTCCTTCATCCATCGATCCA 59.026 52.381 0.00 0.00 0.00 3.41
117 118 2.570752 CCTCCTTCATCCATCGATCCAT 59.429 50.000 0.00 0.00 0.00 3.41
118 119 3.369261 CCTCCTTCATCCATCGATCCATC 60.369 52.174 0.00 0.00 0.00 3.51
119 120 2.568956 TCCTTCATCCATCGATCCATCC 59.431 50.000 0.00 0.00 0.00 3.51
120 121 2.570752 CCTTCATCCATCGATCCATCCT 59.429 50.000 0.00 0.00 0.00 3.24
121 122 3.369261 CCTTCATCCATCGATCCATCCTC 60.369 52.174 0.00 0.00 0.00 3.71
122 123 2.893424 TCATCCATCGATCCATCCTCA 58.107 47.619 0.00 0.00 0.00 3.86
123 124 2.830321 TCATCCATCGATCCATCCTCAG 59.170 50.000 0.00 0.00 0.00 3.35
124 125 2.683211 TCCATCGATCCATCCTCAGA 57.317 50.000 0.00 0.00 0.00 3.27
125 126 3.181393 TCCATCGATCCATCCTCAGAT 57.819 47.619 0.00 0.00 0.00 2.90
126 127 3.095332 TCCATCGATCCATCCTCAGATC 58.905 50.000 0.00 0.00 36.38 2.75
127 128 2.830321 CCATCGATCCATCCTCAGATCA 59.170 50.000 0.00 0.00 39.09 2.92
128 129 3.119065 CCATCGATCCATCCTCAGATCAG 60.119 52.174 0.00 0.00 39.09 2.90
129 130 3.515602 TCGATCCATCCTCAGATCAGA 57.484 47.619 0.00 0.00 39.09 3.27
130 131 4.044946 TCGATCCATCCTCAGATCAGAT 57.955 45.455 0.00 0.00 39.09 2.90
131 132 5.184892 TCGATCCATCCTCAGATCAGATA 57.815 43.478 0.00 0.00 39.09 1.98
132 133 4.946772 TCGATCCATCCTCAGATCAGATAC 59.053 45.833 0.00 0.00 39.09 2.24
133 134 4.949238 CGATCCATCCTCAGATCAGATACT 59.051 45.833 0.00 0.00 39.09 2.12
134 135 5.163632 CGATCCATCCTCAGATCAGATACTG 60.164 48.000 0.00 0.00 39.09 2.74
135 136 5.330648 TCCATCCTCAGATCAGATACTGA 57.669 43.478 3.95 3.95 44.99 3.41
145 146 3.650070 TCAGATACTGATGCATCGACC 57.350 47.619 21.34 8.85 35.39 4.79
146 147 3.225940 TCAGATACTGATGCATCGACCT 58.774 45.455 21.34 10.83 35.39 3.85
147 148 3.638627 TCAGATACTGATGCATCGACCTT 59.361 43.478 21.34 5.52 35.39 3.50
148 149 3.739810 CAGATACTGATGCATCGACCTTG 59.260 47.826 21.34 11.38 32.44 3.61
149 150 1.939974 TACTGATGCATCGACCTTGC 58.060 50.000 21.34 2.50 40.55 4.01
150 151 0.745845 ACTGATGCATCGACCTTGCC 60.746 55.000 21.34 0.00 39.39 4.52
151 152 0.745486 CTGATGCATCGACCTTGCCA 60.745 55.000 21.34 0.57 39.39 4.92
152 153 0.745486 TGATGCATCGACCTTGCCAG 60.745 55.000 21.34 0.00 39.39 4.85
154 155 3.512516 GCATCGACCTTGCCAGGC 61.513 66.667 3.66 3.66 45.56 4.85
155 156 2.825836 CATCGACCTTGCCAGGCC 60.826 66.667 9.64 0.00 45.56 5.19
156 157 3.011517 ATCGACCTTGCCAGGCCT 61.012 61.111 9.64 0.00 45.56 5.19
157 158 3.036429 ATCGACCTTGCCAGGCCTC 62.036 63.158 9.64 0.00 45.56 4.70
158 159 3.710722 CGACCTTGCCAGGCCTCT 61.711 66.667 9.64 0.00 45.56 3.69
159 160 2.270527 GACCTTGCCAGGCCTCTC 59.729 66.667 9.64 0.00 45.56 3.20
160 161 2.204059 ACCTTGCCAGGCCTCTCT 60.204 61.111 9.64 0.00 45.56 3.10
161 162 2.271497 CCTTGCCAGGCCTCTCTG 59.729 66.667 9.64 0.00 31.53 3.35
162 163 2.438075 CTTGCCAGGCCTCTCTGC 60.438 66.667 9.64 3.92 33.64 4.26
170 171 2.279120 GCCTCTCTGCCATCGACG 60.279 66.667 0.00 0.00 0.00 5.12
171 172 2.279120 CCTCTCTGCCATCGACGC 60.279 66.667 0.00 0.00 0.00 5.19
172 173 2.279120 CTCTCTGCCATCGACGCC 60.279 66.667 4.01 0.00 0.00 5.68
173 174 3.068064 TCTCTGCCATCGACGCCA 61.068 61.111 4.01 0.00 0.00 5.69
174 175 2.887568 CTCTGCCATCGACGCCAC 60.888 66.667 4.01 0.00 0.00 5.01
175 176 4.451150 TCTGCCATCGACGCCACC 62.451 66.667 4.01 0.00 0.00 4.61
176 177 4.758251 CTGCCATCGACGCCACCA 62.758 66.667 4.01 0.00 0.00 4.17
179 180 4.429212 CCATCGACGCCACCACGA 62.429 66.667 0.00 0.00 40.18 4.35
180 181 3.179265 CATCGACGCCACCACGAC 61.179 66.667 0.00 0.00 38.79 4.34
188 189 4.293648 CCACCACGACGCCAGACA 62.294 66.667 0.00 0.00 0.00 3.41
189 190 2.048222 CACCACGACGCCAGACAT 60.048 61.111 0.00 0.00 0.00 3.06
190 191 2.094659 CACCACGACGCCAGACATC 61.095 63.158 0.00 0.00 0.00 3.06
191 192 2.880879 CCACGACGCCAGACATCG 60.881 66.667 0.00 0.00 40.51 3.84
193 194 2.152699 CACGACGCCAGACATCGTC 61.153 63.158 0.00 4.87 45.45 4.20
195 196 2.178521 GACGCCAGACATCGTCGT 59.821 61.111 0.00 0.00 44.18 4.34
196 197 1.868251 GACGCCAGACATCGTCGTC 60.868 63.158 0.00 0.00 44.18 4.20
197 198 2.579787 CGCCAGACATCGTCGTCC 60.580 66.667 3.82 0.00 37.67 4.79
198 199 2.885861 GCCAGACATCGTCGTCCT 59.114 61.111 3.82 0.00 37.67 3.85
199 200 1.226717 GCCAGACATCGTCGTCCTC 60.227 63.158 3.82 0.00 37.67 3.71
200 201 1.433879 CCAGACATCGTCGTCCTCC 59.566 63.158 3.82 0.00 37.67 4.30
201 202 1.032657 CCAGACATCGTCGTCCTCCT 61.033 60.000 3.82 0.00 37.67 3.69
202 203 0.099613 CAGACATCGTCGTCCTCCTG 59.900 60.000 3.82 0.00 37.67 3.86
203 204 1.226717 GACATCGTCGTCCTCCTGC 60.227 63.158 0.00 0.00 0.00 4.85
204 205 1.934220 GACATCGTCGTCCTCCTGCA 61.934 60.000 0.00 0.00 0.00 4.41
205 206 1.517257 CATCGTCGTCCTCCTGCAC 60.517 63.158 0.00 0.00 0.00 4.57
206 207 3.052620 ATCGTCGTCCTCCTGCACG 62.053 63.158 0.00 0.00 37.36 5.34
207 208 3.733960 CGTCGTCCTCCTGCACGA 61.734 66.667 0.00 0.00 42.61 4.35
208 209 2.179517 GTCGTCCTCCTGCACGAG 59.820 66.667 5.79 5.79 45.30 4.18
209 210 2.282251 TCGTCCTCCTGCACGAGT 60.282 61.111 11.15 0.00 40.05 4.18
210 211 2.179517 CGTCCTCCTGCACGAGTC 59.820 66.667 11.15 4.22 38.32 3.36
211 212 2.574399 GTCCTCCTGCACGAGTCC 59.426 66.667 11.15 0.00 0.00 3.85
212 213 2.117423 TCCTCCTGCACGAGTCCA 59.883 61.111 11.15 0.00 0.00 4.02
213 214 1.305297 TCCTCCTGCACGAGTCCAT 60.305 57.895 11.15 0.00 0.00 3.41
214 215 1.142748 CCTCCTGCACGAGTCCATC 59.857 63.158 11.15 0.00 0.00 3.51
222 223 3.770040 CGAGTCCATCGCCACCCA 61.770 66.667 0.00 0.00 45.98 4.51
223 224 2.911143 GAGTCCATCGCCACCCAT 59.089 61.111 0.00 0.00 0.00 4.00
224 225 1.227674 GAGTCCATCGCCACCCATC 60.228 63.158 0.00 0.00 0.00 3.51
225 226 2.203209 GTCCATCGCCACCCATCC 60.203 66.667 0.00 0.00 0.00 3.51
226 227 3.860605 TCCATCGCCACCCATCCG 61.861 66.667 0.00 0.00 0.00 4.18
227 228 3.860605 CCATCGCCACCCATCCGA 61.861 66.667 0.00 0.00 35.29 4.55
228 229 2.189257 CATCGCCACCCATCCGAA 59.811 61.111 0.00 0.00 34.42 4.30
229 230 1.451207 CATCGCCACCCATCCGAAA 60.451 57.895 0.00 0.00 34.42 3.46
230 231 1.451387 ATCGCCACCCATCCGAAAC 60.451 57.895 0.00 0.00 34.42 2.78
231 232 2.886730 ATCGCCACCCATCCGAAACC 62.887 60.000 0.00 0.00 34.42 3.27
232 233 3.131478 GCCACCCATCCGAAACCG 61.131 66.667 0.00 0.00 0.00 4.44
233 234 2.666207 CCACCCATCCGAAACCGA 59.334 61.111 0.00 0.00 0.00 4.69
234 235 1.449601 CCACCCATCCGAAACCGAG 60.450 63.158 0.00 0.00 0.00 4.63
235 236 1.295423 CACCCATCCGAAACCGAGT 59.705 57.895 0.00 0.00 0.00 4.18
236 237 0.739813 CACCCATCCGAAACCGAGTC 60.740 60.000 0.00 0.00 0.00 3.36
237 238 0.903454 ACCCATCCGAAACCGAGTCT 60.903 55.000 0.00 0.00 0.00 3.24
238 239 0.179108 CCCATCCGAAACCGAGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
239 240 0.179108 CCATCCGAAACCGAGTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
240 241 0.530744 CATCCGAAACCGAGTCTCCA 59.469 55.000 0.00 0.00 0.00 3.86
241 242 0.531200 ATCCGAAACCGAGTCTCCAC 59.469 55.000 0.00 0.00 0.00 4.02
242 243 0.538977 TCCGAAACCGAGTCTCCACT 60.539 55.000 0.00 0.00 34.57 4.00
243 244 0.388649 CCGAAACCGAGTCTCCACTG 60.389 60.000 0.00 0.00 30.63 3.66
244 245 1.009389 CGAAACCGAGTCTCCACTGC 61.009 60.000 0.00 0.00 30.63 4.40
245 246 1.006102 AAACCGAGTCTCCACTGCG 60.006 57.895 0.00 0.00 30.63 5.18
246 247 3.575351 AACCGAGTCTCCACTGCGC 62.575 63.158 0.00 0.00 30.63 6.09
247 248 4.803426 CCGAGTCTCCACTGCGCC 62.803 72.222 4.18 0.00 30.63 6.53
248 249 4.056125 CGAGTCTCCACTGCGCCA 62.056 66.667 4.18 0.00 30.63 5.69
249 250 2.581354 GAGTCTCCACTGCGCCAT 59.419 61.111 4.18 0.00 30.63 4.40
250 251 1.812922 GAGTCTCCACTGCGCCATG 60.813 63.158 4.18 2.35 30.63 3.66
251 252 3.503363 GTCTCCACTGCGCCATGC 61.503 66.667 4.18 0.00 46.70 4.06
260 261 3.296836 GCGCCATGCCATGCCATA 61.297 61.111 0.00 0.00 37.76 2.74
273 274 3.879295 CCATGCCATAGGAGTTAACACTG 59.121 47.826 8.61 0.00 31.22 3.66
274 275 3.627395 TGCCATAGGAGTTAACACTGG 57.373 47.619 8.61 6.88 31.22 4.00
312 313 3.244981 ACCATCCTTTTTGGTACGGCTAA 60.245 43.478 0.00 0.00 45.62 3.09
321 322 2.372264 TGGTACGGCTAACTAGGACTG 58.628 52.381 0.00 0.00 0.00 3.51
323 324 2.617774 GGTACGGCTAACTAGGACTGAG 59.382 54.545 0.00 0.00 0.00 3.35
410 414 6.806217 TGGGGAATTTACTTTTAGGAATCCA 58.194 36.000 0.61 0.00 0.00 3.41
431 435 9.631257 AATCCAAATGGTTTCTTTCAGAATTTT 57.369 25.926 0.00 0.00 33.67 1.82
459 486 9.892444 TTATATGACTAGTTCTTCCTATTCCCA 57.108 33.333 0.00 0.00 0.00 4.37
461 488 6.295719 TGACTAGTTCTTCCTATTCCCAAC 57.704 41.667 0.00 0.00 0.00 3.77
462 489 6.023603 TGACTAGTTCTTCCTATTCCCAACT 58.976 40.000 0.00 0.00 0.00 3.16
463 490 6.070767 TGACTAGTTCTTCCTATTCCCAACTG 60.071 42.308 0.00 0.00 0.00 3.16
464 491 6.023603 ACTAGTTCTTCCTATTCCCAACTGA 58.976 40.000 0.00 0.00 0.00 3.41
543 727 6.689554 TCTTGATTGTGCTTGATTGCAATTA 58.310 32.000 14.33 6.59 45.12 1.40
553 737 5.632347 GCTTGATTGCAATTATCCATGCTAC 59.368 40.000 14.33 0.00 42.97 3.58
557 741 7.554211 TGATTGCAATTATCCATGCTACAAAA 58.446 30.769 14.33 0.00 42.97 2.44
560 744 9.701098 ATTGCAATTATCCATGCTACAAAATAG 57.299 29.630 5.99 0.00 42.97 1.73
624 808 4.662278 TCAGAGGTTCCAAAAGTATTGGG 58.338 43.478 7.33 0.00 39.96 4.12
641 825 0.914902 GGGGGAAAGGACCTAGCTGT 60.915 60.000 0.00 0.00 0.00 4.40
649 833 3.185880 AGGACCTAGCTGTACCAAGAA 57.814 47.619 0.00 0.00 0.00 2.52
660 844 5.038033 GCTGTACCAAGAAGAGTCGATTAG 58.962 45.833 0.00 0.00 0.00 1.73
662 846 6.183360 GCTGTACCAAGAAGAGTCGATTAGTA 60.183 42.308 0.00 0.00 0.00 1.82
666 850 7.171630 ACCAAGAAGAGTCGATTAGTACATT 57.828 36.000 0.00 0.00 0.00 2.71
682 866 3.281727 ACATTGACTATGGCGGACATT 57.718 42.857 0.00 0.00 41.03 2.71
704 888 6.741992 TTACAATGTTGAGCCAGAATAGTG 57.258 37.500 0.00 0.00 0.00 2.74
742 926 0.601558 TGGTCGAGTAGAAGCACCAC 59.398 55.000 0.00 0.00 31.99 4.16
767 951 3.613030 ACAGTTTAGGTCACGTTGGTTT 58.387 40.909 0.00 0.00 0.00 3.27
784 968 7.657761 ACGTTGGTTTTATATTGCAATTTTGGA 59.342 29.630 18.75 0.00 0.00 3.53
785 969 8.499162 CGTTGGTTTTATATTGCAATTTTGGAA 58.501 29.630 18.75 0.00 42.66 3.53
814 998 7.867445 AGTAATTAAGCAAACAATTGGAACG 57.133 32.000 10.83 0.00 37.02 3.95
818 1002 3.575965 AGCAAACAATTGGAACGGATC 57.424 42.857 10.83 0.00 37.02 3.36
830 1014 0.036306 AACGGATCGAGTTGCCCTTT 59.964 50.000 4.66 0.00 0.00 3.11
912 1096 4.527038 TCTCCTTCCTGCCCTATAAATACG 59.473 45.833 0.00 0.00 0.00 3.06
954 1138 4.676924 CGCATCACCTTTTCAAAGTCTTTC 59.323 41.667 0.00 0.00 34.20 2.62
981 1165 4.929479 AGTGACATAGTCTTCTGGAGTCT 58.071 43.478 0.00 0.00 33.15 3.24
996 1180 2.070028 GAGTCTGGGAAAAAGTCGAGC 58.930 52.381 0.00 0.00 0.00 5.03
1323 1514 9.490663 CAAACTGAGGTGAAATATATTCGTTTC 57.509 33.333 0.00 0.00 35.45 2.78
1346 1537 3.743396 CAGCCGTTCTCCTATAGAATTGC 59.257 47.826 0.00 0.00 45.84 3.56
1441 1674 0.527565 CTTGGGCCTTGTTCGGATTG 59.472 55.000 4.53 0.00 0.00 2.67
1611 1846 1.884926 CTCTTTCGGATGGCGCTCC 60.885 63.158 7.64 6.47 0.00 4.70
1619 1854 0.467290 GGATGGCGCTCCCCAATTTA 60.467 55.000 7.64 0.00 38.61 1.40
1621 1856 0.468029 ATGGCGCTCCCCAATTTAGG 60.468 55.000 7.64 0.00 38.61 2.69
2121 2447 4.380867 GGGTCATTTCCATGATGTCAACAC 60.381 45.833 0.00 0.00 41.64 3.32
2257 2586 7.784470 AGATGTCTTTTAAGGTGAGTAGTCT 57.216 36.000 0.00 0.00 0.00 3.24
2260 2589 9.924650 GATGTCTTTTAAGGTGAGTAGTCTAAA 57.075 33.333 0.00 0.00 0.00 1.85
2326 2655 6.048509 GCTTTTCCATTCAAAACCTTTCAGA 58.951 36.000 0.00 0.00 0.00 3.27
2447 2776 3.893200 GGGTTTAGCCAAGGTTTTACACT 59.107 43.478 0.00 0.00 39.65 3.55
2493 2822 5.339008 TTGTTCCACTCGTAGCTGATAAT 57.661 39.130 0.00 0.00 0.00 1.28
2500 2829 5.300752 CACTCGTAGCTGATAATTGGGATT 58.699 41.667 0.00 0.00 0.00 3.01
2539 2868 4.012374 CTCATTGGCCATTGAAGTAGTGT 58.988 43.478 26.02 0.00 0.00 3.55
2556 2885 2.375174 AGTGTTCCTCCCTTATGCACAA 59.625 45.455 0.00 0.00 0.00 3.33
2592 2921 3.806949 AGTTAAGGGCATGTCCTTTCA 57.193 42.857 35.18 20.20 44.14 2.69
2860 3593 8.075761 TCCAAGGATATAGACATCATCATCAG 57.924 38.462 0.00 0.00 0.00 2.90
3146 3880 2.410392 TGTACATCATCGTCGTTTGCAC 59.590 45.455 0.00 0.00 0.00 4.57
3177 3911 8.945057 CCATTAATCCGAAAACAATTTGGAAAT 58.055 29.630 0.78 0.00 32.91 2.17
3242 3976 7.801716 TTAGTTAGCCAGCCAGTTAATTATG 57.198 36.000 0.00 0.00 0.00 1.90
3311 4045 4.923281 CGGAATCAATTTGGAAACCAAGTC 59.077 41.667 3.49 0.00 44.84 3.01
3322 4056 6.357579 TGGAAACCAAGTCATTAATGCAAT 57.642 33.333 10.76 0.00 0.00 3.56
3377 4111 9.676129 TCTCCAGATAATTAGAAGTAGGGAATT 57.324 33.333 0.00 0.00 0.00 2.17
3411 4145 6.630203 TTAGTTTTCCTAATAGTCTGCCCA 57.370 37.500 0.00 0.00 30.55 5.36
3459 4193 7.985184 TCCAAAACTTCATATAATCTAGCACGT 59.015 33.333 0.00 0.00 0.00 4.49
3474 4208 1.139989 CACGTCACATGTCACCACTC 58.860 55.000 0.00 0.00 0.00 3.51
3494 4228 7.093771 ACCACTCTTCAAATATTGTTTCATCCC 60.094 37.037 0.00 0.00 0.00 3.85
3520 4254 1.537776 CGCATGCCACCACTTTTCAAA 60.538 47.619 13.15 0.00 0.00 2.69
3530 4264 5.347342 CACCACTTTTCAAAAGCACATGTA 58.653 37.500 9.95 0.00 0.00 2.29
3547 4281 9.243105 AGCACATGTATTTAGATTTACACCTTT 57.757 29.630 0.00 0.00 31.55 3.11
3775 4532 6.743575 ACTGGTGCAAAATCATAAGACTAC 57.256 37.500 0.00 0.00 0.00 2.73
3812 4578 0.951558 GTGGTTGGTGGTGTGTCATC 59.048 55.000 0.00 0.00 0.00 2.92
3969 4743 5.391449 TCGAATCCGAGCTAAATCTTATCG 58.609 41.667 0.00 0.00 40.30 2.92
4535 5361 7.429636 TTGGAACGAAACTTGATTAAGGTAG 57.570 36.000 1.95 0.00 38.26 3.18
5048 5959 2.289320 ACAGATTCCTCACACTGCTGAC 60.289 50.000 0.00 0.00 34.25 3.51
5078 5989 1.693083 GCGCCATACGTCCTGTTCAC 61.693 60.000 0.00 0.00 46.11 3.18
5272 6190 7.669427 ACAAGGATCAAAATAACAATGAAGCA 58.331 30.769 0.00 0.00 0.00 3.91
5399 6317 5.920273 ACTAGCCAAAATTCAAACGATGTTG 59.080 36.000 0.00 0.00 0.00 3.33
5790 6709 1.134877 AGACCTCACTGTCGCATCATG 60.135 52.381 0.00 0.00 40.26 3.07
5791 6710 0.897621 ACCTCACTGTCGCATCATGA 59.102 50.000 0.00 0.00 0.00 3.07
5828 6747 4.094146 GGAGACAAAGATGTGCTTTCTAGC 59.906 45.833 0.00 0.00 44.83 3.42
5860 6784 2.577059 GATCGGAAGGCACGACCA 59.423 61.111 1.24 0.00 43.78 4.02
5863 6787 1.827399 ATCGGAAGGCACGACCAACT 61.827 55.000 1.24 0.00 43.78 3.16
5912 6836 8.865420 AGTAGAACTGTAGAAGTGACTGATTA 57.135 34.615 0.00 0.00 39.81 1.75
5964 6888 1.543208 CCTCACCTGTTGTTGCTGCTA 60.543 52.381 0.00 0.00 0.00 3.49
6008 6956 3.245371 ACCATGATCAACATCACCAACCT 60.245 43.478 0.00 0.00 42.05 3.50
6023 6971 3.880846 CCTTGCGCGCATTCCCTC 61.881 66.667 36.83 0.97 0.00 4.30
6034 6982 2.208431 GCATTCCCTCTCAATCTGTCG 58.792 52.381 0.00 0.00 0.00 4.35
6054 7002 0.249073 CTCGCCTAGACCATTGACCG 60.249 60.000 0.00 0.00 0.00 4.79
6091 7039 4.774124 ACTATGACCATGACCATTGACTG 58.226 43.478 12.66 0.00 0.00 3.51
6092 7040 1.825090 TGACCATGACCATTGACTGC 58.175 50.000 0.00 0.00 0.00 4.40
6093 7041 1.073603 TGACCATGACCATTGACTGCA 59.926 47.619 0.00 0.00 0.00 4.41
6104 7052 5.111293 ACCATTGACTGCAAAAAGAAGTTG 58.889 37.500 0.00 0.00 35.73 3.16
6188 7136 6.700960 TGATTTGCAAAATGTTCACGAGATTT 59.299 30.769 17.19 0.00 0.00 2.17
6391 7340 4.680237 CCGCGGTCTGCCTTGACA 62.680 66.667 19.50 0.00 42.08 3.58
6392 7341 2.664851 CGCGGTCTGCCTTGACAA 60.665 61.111 0.00 0.00 42.08 3.18
6393 7342 2.034879 CGCGGTCTGCCTTGACAAT 61.035 57.895 0.00 0.00 42.08 2.71
6394 7343 0.739462 CGCGGTCTGCCTTGACAATA 60.739 55.000 0.00 0.00 42.08 1.90
6395 7344 1.009829 GCGGTCTGCCTTGACAATAG 58.990 55.000 0.00 0.00 38.61 1.73
6396 7345 1.009829 CGGTCTGCCTTGACAATAGC 58.990 55.000 3.91 3.91 38.61 2.97
6397 7346 1.009829 GGTCTGCCTTGACAATAGCG 58.990 55.000 6.02 2.48 38.61 4.26
6398 7347 1.009829 GTCTGCCTTGACAATAGCGG 58.990 55.000 11.26 11.26 36.97 5.52
6399 7348 0.107703 TCTGCCTTGACAATAGCGGG 60.108 55.000 15.49 3.37 32.35 6.13
6400 7349 1.077787 TGCCTTGACAATAGCGGGG 60.078 57.895 6.02 0.00 0.00 5.73
6401 7350 1.077716 GCCTTGACAATAGCGGGGT 60.078 57.895 0.00 0.00 0.00 4.95
6402 7351 0.679960 GCCTTGACAATAGCGGGGTT 60.680 55.000 0.00 0.00 0.00 4.11
6403 7352 1.834188 CCTTGACAATAGCGGGGTTT 58.166 50.000 0.00 0.00 0.00 3.27
6404 7353 2.942306 GCCTTGACAATAGCGGGGTTTA 60.942 50.000 0.00 0.00 0.00 2.01
6405 7354 2.681344 CCTTGACAATAGCGGGGTTTAC 59.319 50.000 0.00 0.00 0.00 2.01
6406 7355 3.606687 CTTGACAATAGCGGGGTTTACT 58.393 45.455 0.00 0.00 0.00 2.24
6407 7356 3.706600 TGACAATAGCGGGGTTTACTT 57.293 42.857 0.00 0.00 0.00 2.24
6408 7357 4.822685 TGACAATAGCGGGGTTTACTTA 57.177 40.909 0.00 0.00 0.00 2.24
6409 7358 4.761975 TGACAATAGCGGGGTTTACTTAG 58.238 43.478 0.00 0.00 0.00 2.18
6410 7359 4.124970 GACAATAGCGGGGTTTACTTAGG 58.875 47.826 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.129785 GTGGCTTGGATGGGGCATC 61.130 63.158 0.00 0.00 40.00 3.91
2 3 2.042639 GTGGCTTGGATGGGGCAT 60.043 61.111 0.00 0.00 40.00 4.40
3 4 2.458969 ATTGTGGCTTGGATGGGGCA 62.459 55.000 0.00 0.00 35.68 5.36
4 5 0.396974 TATTGTGGCTTGGATGGGGC 60.397 55.000 0.00 0.00 0.00 5.80
5 6 1.402787 GTATTGTGGCTTGGATGGGG 58.597 55.000 0.00 0.00 0.00 4.96
6 7 1.063717 AGGTATTGTGGCTTGGATGGG 60.064 52.381 0.00 0.00 0.00 4.00
7 8 2.026641 CAGGTATTGTGGCTTGGATGG 58.973 52.381 0.00 0.00 0.00 3.51
8 9 2.026641 CCAGGTATTGTGGCTTGGATG 58.973 52.381 0.00 0.00 34.25 3.51
9 10 1.922447 TCCAGGTATTGTGGCTTGGAT 59.078 47.619 0.00 0.00 36.20 3.41
10 11 1.004277 GTCCAGGTATTGTGGCTTGGA 59.996 52.381 0.00 0.00 38.33 3.53
11 12 1.004745 AGTCCAGGTATTGTGGCTTGG 59.995 52.381 0.00 0.00 34.77 3.61
12 13 2.086869 CAGTCCAGGTATTGTGGCTTG 58.913 52.381 0.00 0.00 34.77 4.01
13 14 1.004745 CCAGTCCAGGTATTGTGGCTT 59.995 52.381 0.00 0.00 34.77 4.35
14 15 0.620556 CCAGTCCAGGTATTGTGGCT 59.379 55.000 0.00 0.00 34.77 4.75
15 16 0.394352 CCCAGTCCAGGTATTGTGGC 60.394 60.000 0.00 0.00 34.77 5.01
16 17 0.991920 ACCCAGTCCAGGTATTGTGG 59.008 55.000 0.00 0.00 35.24 4.17
17 18 2.879103 AACCCAGTCCAGGTATTGTG 57.121 50.000 0.00 0.00 36.27 3.33
18 19 3.008704 GTGTAACCCAGTCCAGGTATTGT 59.991 47.826 0.00 0.00 36.27 2.71
19 20 3.008594 TGTGTAACCCAGTCCAGGTATTG 59.991 47.826 0.00 0.00 36.27 1.90
20 21 3.008704 GTGTGTAACCCAGTCCAGGTATT 59.991 47.826 0.00 0.00 36.27 1.89
21 22 2.570302 GTGTGTAACCCAGTCCAGGTAT 59.430 50.000 0.00 0.00 36.27 2.73
22 23 1.972795 GTGTGTAACCCAGTCCAGGTA 59.027 52.381 0.00 0.00 36.27 3.08
23 24 0.763035 GTGTGTAACCCAGTCCAGGT 59.237 55.000 0.00 0.00 40.14 4.00
24 25 0.036306 GGTGTGTAACCCAGTCCAGG 59.964 60.000 0.00 0.00 44.02 4.45
25 26 3.625745 GGTGTGTAACCCAGTCCAG 57.374 57.895 0.00 0.00 44.02 3.86
33 34 4.318949 ACGGGCCGGTGTGTAACC 62.319 66.667 31.78 0.00 46.60 2.85
34 35 2.739671 GACGGGCCGGTGTGTAAC 60.740 66.667 31.78 0.86 37.35 2.50
35 36 4.360964 CGACGGGCCGGTGTGTAA 62.361 66.667 31.78 0.00 0.00 2.41
44 45 3.423154 CTGAAAGTGCGACGGGCC 61.423 66.667 0.00 0.00 42.61 5.80
67 68 3.663176 GCAGCGTGCACATGTGGT 61.663 61.111 26.55 3.78 44.26 4.16
77 78 3.741476 GAAGGCCCTTGCAGCGTG 61.741 66.667 0.00 0.00 40.13 5.34
78 79 4.269523 TGAAGGCCCTTGCAGCGT 62.270 61.111 0.00 0.00 40.13 5.07
79 80 3.741476 GTGAAGGCCCTTGCAGCG 61.741 66.667 0.00 0.00 40.13 5.18
80 81 3.376918 GGTGAAGGCCCTTGCAGC 61.377 66.667 0.00 5.06 40.13 5.25
81 82 1.676967 GAGGTGAAGGCCCTTGCAG 60.677 63.158 0.00 0.00 40.13 4.41
82 83 2.436109 GAGGTGAAGGCCCTTGCA 59.564 61.111 0.00 0.00 40.13 4.08
83 84 2.361737 GGAGGTGAAGGCCCTTGC 60.362 66.667 0.00 0.00 30.60 4.01
84 85 0.322906 GAAGGAGGTGAAGGCCCTTG 60.323 60.000 0.00 0.00 38.97 3.61
85 86 0.772124 TGAAGGAGGTGAAGGCCCTT 60.772 55.000 0.00 0.00 41.34 3.95
86 87 0.551131 ATGAAGGAGGTGAAGGCCCT 60.551 55.000 0.00 0.00 34.11 5.19
87 88 0.106967 GATGAAGGAGGTGAAGGCCC 60.107 60.000 0.00 0.00 0.00 5.80
88 89 0.106967 GGATGAAGGAGGTGAAGGCC 60.107 60.000 0.00 0.00 0.00 5.19
89 90 0.620556 TGGATGAAGGAGGTGAAGGC 59.379 55.000 0.00 0.00 0.00 4.35
90 91 2.484417 CGATGGATGAAGGAGGTGAAGG 60.484 54.545 0.00 0.00 0.00 3.46
91 92 2.432146 TCGATGGATGAAGGAGGTGAAG 59.568 50.000 0.00 0.00 0.00 3.02
92 93 2.466846 TCGATGGATGAAGGAGGTGAA 58.533 47.619 0.00 0.00 0.00 3.18
93 94 2.159179 TCGATGGATGAAGGAGGTGA 57.841 50.000 0.00 0.00 0.00 4.02
94 95 2.289320 GGATCGATGGATGAAGGAGGTG 60.289 54.545 0.54 0.00 31.51 4.00
95 96 1.974236 GGATCGATGGATGAAGGAGGT 59.026 52.381 0.54 0.00 31.51 3.85
96 97 1.973515 TGGATCGATGGATGAAGGAGG 59.026 52.381 0.54 0.00 31.51 4.30
97 98 3.369261 GGATGGATCGATGGATGAAGGAG 60.369 52.174 0.54 0.00 31.51 3.69
98 99 2.568956 GGATGGATCGATGGATGAAGGA 59.431 50.000 0.54 0.00 31.51 3.36
99 100 2.570752 AGGATGGATCGATGGATGAAGG 59.429 50.000 0.54 0.00 31.51 3.46
100 101 3.260128 TGAGGATGGATCGATGGATGAAG 59.740 47.826 0.54 0.00 31.51 3.02
101 102 3.242011 TGAGGATGGATCGATGGATGAA 58.758 45.455 0.54 0.00 31.51 2.57
102 103 2.830321 CTGAGGATGGATCGATGGATGA 59.170 50.000 0.54 0.00 31.51 2.92
103 104 2.830321 TCTGAGGATGGATCGATGGATG 59.170 50.000 0.54 0.00 31.51 3.51
104 105 3.181393 TCTGAGGATGGATCGATGGAT 57.819 47.619 0.54 0.00 34.96 3.41
105 106 2.683211 TCTGAGGATGGATCGATGGA 57.317 50.000 0.54 0.00 0.00 3.41
106 107 2.830321 TGATCTGAGGATGGATCGATGG 59.170 50.000 0.54 0.00 40.63 3.51
107 108 3.762823 TCTGATCTGAGGATGGATCGATG 59.237 47.826 0.54 0.00 40.63 3.84
108 109 4.044946 TCTGATCTGAGGATGGATCGAT 57.955 45.455 0.00 0.00 40.63 3.59
109 110 3.515602 TCTGATCTGAGGATGGATCGA 57.484 47.619 0.00 0.00 40.63 3.59
110 111 4.949238 AGTATCTGATCTGAGGATGGATCG 59.051 45.833 8.37 0.00 40.63 3.69
111 112 5.951148 TCAGTATCTGATCTGAGGATGGATC 59.049 44.000 8.37 0.00 35.39 3.36
112 113 5.901598 TCAGTATCTGATCTGAGGATGGAT 58.098 41.667 8.37 0.00 35.39 3.41
113 114 5.330648 TCAGTATCTGATCTGAGGATGGA 57.669 43.478 8.37 0.28 35.39 3.41
114 115 5.624967 GCATCAGTATCTGATCTGAGGATGG 60.625 48.000 23.27 13.00 46.83 3.51
115 116 5.047235 TGCATCAGTATCTGATCTGAGGATG 60.047 44.000 23.27 20.05 46.83 3.51
116 117 5.085219 TGCATCAGTATCTGATCTGAGGAT 58.915 41.667 23.27 5.93 46.83 3.24
117 118 4.477249 TGCATCAGTATCTGATCTGAGGA 58.523 43.478 23.27 14.62 46.83 3.71
118 119 4.868314 TGCATCAGTATCTGATCTGAGG 57.132 45.455 18.64 18.64 46.83 3.86
119 120 5.096849 CGATGCATCAGTATCTGATCTGAG 58.903 45.833 25.70 13.42 46.83 3.35
120 121 4.763793 TCGATGCATCAGTATCTGATCTGA 59.236 41.667 25.70 16.58 46.83 3.27
121 122 4.858140 GTCGATGCATCAGTATCTGATCTG 59.142 45.833 25.70 5.38 46.83 2.90
122 123 4.082300 GGTCGATGCATCAGTATCTGATCT 60.082 45.833 25.70 0.00 46.83 2.75
123 124 4.082300 AGGTCGATGCATCAGTATCTGATC 60.082 45.833 25.70 13.05 46.83 2.92
125 126 3.225940 AGGTCGATGCATCAGTATCTGA 58.774 45.455 25.70 10.44 44.99 3.27
126 127 3.657015 AGGTCGATGCATCAGTATCTG 57.343 47.619 25.70 8.22 35.04 2.90
127 128 3.801638 GCAAGGTCGATGCATCAGTATCT 60.802 47.826 25.70 13.14 43.29 1.98
128 129 2.478134 GCAAGGTCGATGCATCAGTATC 59.522 50.000 25.70 11.12 43.29 2.24
129 130 2.487934 GCAAGGTCGATGCATCAGTAT 58.512 47.619 25.70 6.58 43.29 2.12
130 131 1.473257 GGCAAGGTCGATGCATCAGTA 60.473 52.381 25.70 8.30 45.60 2.74
131 132 0.745845 GGCAAGGTCGATGCATCAGT 60.746 55.000 25.70 4.49 45.60 3.41
132 133 0.745486 TGGCAAGGTCGATGCATCAG 60.745 55.000 25.70 17.71 45.60 2.90
133 134 0.745486 CTGGCAAGGTCGATGCATCA 60.745 55.000 25.70 10.72 45.60 3.07
134 135 1.442526 CCTGGCAAGGTCGATGCATC 61.443 60.000 17.10 17.10 45.60 3.91
135 136 1.452651 CCTGGCAAGGTCGATGCAT 60.453 57.895 11.32 0.00 45.60 3.96
136 137 2.046023 CCTGGCAAGGTCGATGCA 60.046 61.111 11.32 0.00 45.60 3.96
137 138 3.512516 GCCTGGCAAGGTCGATGC 61.513 66.667 15.17 0.73 46.43 3.91
138 139 2.825836 GGCCTGGCAAGGTCGATG 60.826 66.667 22.05 0.00 46.43 3.84
143 144 2.204059 AGAGAGGCCTGGCAAGGT 60.204 61.111 22.05 0.91 46.43 3.50
145 146 2.438075 GCAGAGAGGCCTGGCAAG 60.438 66.667 22.05 0.00 34.82 4.01
153 154 2.279120 CGTCGATGGCAGAGAGGC 60.279 66.667 0.00 0.00 44.50 4.70
154 155 2.279120 GCGTCGATGGCAGAGAGG 60.279 66.667 6.79 9.41 0.00 3.69
155 156 2.279120 GGCGTCGATGGCAGAGAG 60.279 66.667 24.90 0.00 0.00 3.20
156 157 3.068064 TGGCGTCGATGGCAGAGA 61.068 61.111 28.12 7.32 39.79 3.10
157 158 2.887568 GTGGCGTCGATGGCAGAG 60.888 66.667 31.74 0.00 45.88 3.35
158 159 4.451150 GGTGGCGTCGATGGCAGA 62.451 66.667 31.74 10.62 45.88 4.26
159 160 4.758251 TGGTGGCGTCGATGGCAG 62.758 66.667 31.74 2.43 45.88 4.85
162 163 4.429212 TCGTGGTGGCGTCGATGG 62.429 66.667 6.79 0.00 0.00 3.51
163 164 3.179265 GTCGTGGTGGCGTCGATG 61.179 66.667 0.00 0.00 36.08 3.84
164 165 4.771356 CGTCGTGGTGGCGTCGAT 62.771 66.667 0.00 0.00 43.57 3.59
171 172 3.589654 ATGTCTGGCGTCGTGGTGG 62.590 63.158 0.00 0.00 0.00 4.61
172 173 2.048222 ATGTCTGGCGTCGTGGTG 60.048 61.111 0.00 0.00 0.00 4.17
173 174 2.261671 GATGTCTGGCGTCGTGGT 59.738 61.111 0.00 0.00 0.00 4.16
179 180 2.178521 GACGACGATGTCTGGCGT 59.821 61.111 0.00 0.00 44.33 5.68
180 181 2.579787 GGACGACGATGTCTGGCG 60.580 66.667 0.00 0.00 38.91 5.69
181 182 1.226717 GAGGACGACGATGTCTGGC 60.227 63.158 0.00 0.00 38.91 4.85
182 183 1.032657 AGGAGGACGACGATGTCTGG 61.033 60.000 0.00 0.00 38.91 3.86
183 184 0.099613 CAGGAGGACGACGATGTCTG 59.900 60.000 0.00 0.00 38.91 3.51
184 185 1.658686 GCAGGAGGACGACGATGTCT 61.659 60.000 0.00 0.00 38.91 3.41
185 186 1.226717 GCAGGAGGACGACGATGTC 60.227 63.158 0.00 0.00 38.17 3.06
186 187 1.977009 TGCAGGAGGACGACGATGT 60.977 57.895 0.00 0.00 0.00 3.06
187 188 1.517257 GTGCAGGAGGACGACGATG 60.517 63.158 0.00 0.00 0.00 3.84
188 189 2.885861 GTGCAGGAGGACGACGAT 59.114 61.111 0.00 0.00 0.00 3.73
194 195 1.608717 ATGGACTCGTGCAGGAGGAC 61.609 60.000 33.05 25.81 38.39 3.85
195 196 1.305297 ATGGACTCGTGCAGGAGGA 60.305 57.895 33.05 20.14 38.39 3.71
196 197 1.142748 GATGGACTCGTGCAGGAGG 59.857 63.158 33.05 18.89 38.39 4.30
197 198 1.226802 CGATGGACTCGTGCAGGAG 60.227 63.158 29.78 29.78 42.56 3.69
198 199 2.885113 CGATGGACTCGTGCAGGA 59.115 61.111 9.07 9.07 42.56 3.86
206 207 1.227674 GATGGGTGGCGATGGACTC 60.228 63.158 0.00 0.00 0.00 3.36
207 208 2.746375 GGATGGGTGGCGATGGACT 61.746 63.158 0.00 0.00 0.00 3.85
208 209 2.203209 GGATGGGTGGCGATGGAC 60.203 66.667 0.00 0.00 0.00 4.02
209 210 3.860605 CGGATGGGTGGCGATGGA 61.861 66.667 0.00 0.00 0.00 3.41
210 211 2.884997 TTTCGGATGGGTGGCGATGG 62.885 60.000 0.00 0.00 0.00 3.51
211 212 1.451207 TTTCGGATGGGTGGCGATG 60.451 57.895 0.00 0.00 0.00 3.84
212 213 1.451387 GTTTCGGATGGGTGGCGAT 60.451 57.895 0.00 0.00 0.00 4.58
213 214 2.046700 GTTTCGGATGGGTGGCGA 60.047 61.111 0.00 0.00 0.00 5.54
214 215 3.131478 GGTTTCGGATGGGTGGCG 61.131 66.667 0.00 0.00 0.00 5.69
215 216 3.131478 CGGTTTCGGATGGGTGGC 61.131 66.667 0.00 0.00 0.00 5.01
216 217 1.449601 CTCGGTTTCGGATGGGTGG 60.450 63.158 0.00 0.00 36.95 4.61
217 218 0.739813 GACTCGGTTTCGGATGGGTG 60.740 60.000 0.00 0.00 36.95 4.61
218 219 0.903454 AGACTCGGTTTCGGATGGGT 60.903 55.000 0.00 0.00 36.95 4.51
219 220 0.179108 GAGACTCGGTTTCGGATGGG 60.179 60.000 0.00 0.00 36.95 4.00
220 221 0.179108 GGAGACTCGGTTTCGGATGG 60.179 60.000 0.00 0.00 36.95 3.51
221 222 0.530744 TGGAGACTCGGTTTCGGATG 59.469 55.000 0.00 0.00 36.95 3.51
222 223 0.531200 GTGGAGACTCGGTTTCGGAT 59.469 55.000 0.00 0.00 36.95 4.18
223 224 0.538977 AGTGGAGACTCGGTTTCGGA 60.539 55.000 0.00 0.00 36.95 4.55
224 225 0.388649 CAGTGGAGACTCGGTTTCGG 60.389 60.000 0.00 0.00 36.95 4.30
225 226 1.009389 GCAGTGGAGACTCGGTTTCG 61.009 60.000 0.00 0.00 37.82 3.46
226 227 1.009389 CGCAGTGGAGACTCGGTTTC 61.009 60.000 0.00 0.00 0.00 2.78
227 228 1.006102 CGCAGTGGAGACTCGGTTT 60.006 57.895 0.00 0.00 0.00 3.27
228 229 2.651361 CGCAGTGGAGACTCGGTT 59.349 61.111 0.00 0.00 0.00 4.44
229 230 4.057428 GCGCAGTGGAGACTCGGT 62.057 66.667 0.30 0.00 0.00 4.69
230 231 4.803426 GGCGCAGTGGAGACTCGG 62.803 72.222 10.83 0.00 0.00 4.63
231 232 3.362399 ATGGCGCAGTGGAGACTCG 62.362 63.158 10.83 0.00 0.00 4.18
232 233 1.812922 CATGGCGCAGTGGAGACTC 60.813 63.158 10.83 0.00 0.00 3.36
233 234 2.267006 CATGGCGCAGTGGAGACT 59.733 61.111 10.83 0.00 0.00 3.24
234 235 3.503363 GCATGGCGCAGTGGAGAC 61.503 66.667 10.83 0.00 41.79 3.36
235 236 4.783621 GGCATGGCGCAGTGGAGA 62.784 66.667 10.83 0.00 45.17 3.71
237 238 4.429522 ATGGCATGGCGCAGTGGA 62.430 61.111 15.27 0.00 45.17 4.02
238 239 4.201679 CATGGCATGGCGCAGTGG 62.202 66.667 19.80 0.00 45.17 4.00
239 240 4.865761 GCATGGCATGGCGCAGTG 62.866 66.667 27.48 8.47 45.17 3.66
246 247 0.111832 ACTCCTATGGCATGGCATGG 59.888 55.000 37.19 34.07 0.00 3.66
247 248 1.991121 AACTCCTATGGCATGGCATG 58.009 50.000 37.19 26.90 0.00 4.06
248 249 3.117550 TGTTAACTCCTATGGCATGGCAT 60.118 43.478 33.85 33.85 0.00 4.40
249 250 2.240921 TGTTAACTCCTATGGCATGGCA 59.759 45.455 25.52 25.52 0.00 4.92
250 251 2.618709 GTGTTAACTCCTATGGCATGGC 59.381 50.000 13.29 13.29 0.00 4.40
251 252 3.879295 CAGTGTTAACTCCTATGGCATGG 59.121 47.826 10.98 7.13 32.98 3.66
259 260 6.073314 ACAACTAGTCCAGTGTTAACTCCTA 58.927 40.000 7.22 0.12 37.63 2.94
260 261 4.900054 ACAACTAGTCCAGTGTTAACTCCT 59.100 41.667 7.22 0.00 37.63 3.69
312 313 4.264442 ACATGGTTCCTACTCAGTCCTAGT 60.264 45.833 0.00 0.00 0.00 2.57
321 322 3.644335 AGAGGGTACATGGTTCCTACTC 58.356 50.000 0.00 0.36 0.00 2.59
323 324 3.134262 GGAAGAGGGTACATGGTTCCTAC 59.866 52.174 0.00 0.00 32.33 3.18
394 398 9.374711 AGAAACCATTTGGATTCCTAAAAGTAA 57.625 29.630 14.01 0.00 44.99 2.24
436 440 7.844779 AGTTGGGAATAGGAAGAACTAGTCATA 59.155 37.037 0.00 0.00 39.19 2.15
437 441 6.674419 AGTTGGGAATAGGAAGAACTAGTCAT 59.326 38.462 0.00 0.00 39.19 3.06
443 470 7.348274 TCATATCAGTTGGGAATAGGAAGAACT 59.652 37.037 0.00 0.00 0.00 3.01
459 486 7.067859 AGCACAAGCAATATTGTCATATCAGTT 59.932 33.333 16.61 0.00 41.41 3.16
461 488 6.967135 AGCACAAGCAATATTGTCATATCAG 58.033 36.000 16.61 2.07 41.41 2.90
462 489 6.947644 AGCACAAGCAATATTGTCATATCA 57.052 33.333 16.61 0.00 41.41 2.15
463 490 7.703621 ACAAAGCACAAGCAATATTGTCATATC 59.296 33.333 16.61 0.00 41.41 1.63
464 491 7.549839 ACAAAGCACAAGCAATATTGTCATAT 58.450 30.769 16.61 0.00 41.41 1.78
520 704 5.856126 AATTGCAATCAAGCACAATCAAG 57.144 34.783 13.38 0.00 45.61 3.02
524 708 5.979993 TGGATAATTGCAATCAAGCACAAT 58.020 33.333 13.38 0.00 45.61 2.71
586 770 8.577296 GGAACCTCTGAAAGCTTTACTATTTTT 58.423 33.333 12.68 0.51 0.00 1.94
624 808 1.485480 GGTACAGCTAGGTCCTTTCCC 59.515 57.143 0.00 0.00 0.00 3.97
641 825 7.876936 ATGTACTAATCGACTCTTCTTGGTA 57.123 36.000 0.00 0.00 0.00 3.25
649 833 7.522399 GCCATAGTCAATGTACTAATCGACTCT 60.522 40.741 0.00 0.00 35.65 3.24
660 844 3.173668 TGTCCGCCATAGTCAATGTAC 57.826 47.619 0.00 0.00 33.34 2.90
662 846 3.281727 AATGTCCGCCATAGTCAATGT 57.718 42.857 0.00 0.00 33.34 2.71
666 850 3.897141 TTGTAATGTCCGCCATAGTCA 57.103 42.857 0.00 0.00 31.97 3.41
682 866 5.185454 CCACTATTCTGGCTCAACATTGTA 58.815 41.667 0.00 0.00 0.00 2.41
704 888 7.544622 TCGACCAGTATATATTATGCTCAACC 58.455 38.462 0.00 0.00 0.00 3.77
742 926 4.812626 ACCAACGTGACCTAAACTGTAAAG 59.187 41.667 0.00 0.00 0.00 1.85
791 975 6.864165 TCCGTTCCAATTGTTTGCTTAATTAC 59.136 34.615 4.43 0.00 0.00 1.89
792 976 6.982852 TCCGTTCCAATTGTTTGCTTAATTA 58.017 32.000 4.43 0.00 0.00 1.40
795 979 4.920640 TCCGTTCCAATTGTTTGCTTAA 57.079 36.364 4.43 0.00 0.00 1.85
814 998 2.693267 ACTAAAGGGCAACTCGATCC 57.307 50.000 0.00 0.00 0.00 3.36
818 1002 2.474410 AGGAACTAAAGGGCAACTCG 57.526 50.000 0.00 0.00 36.02 4.18
912 1096 2.161030 CGGGACTACCTATCTGGCTAC 58.839 57.143 0.00 0.00 40.22 3.58
954 1138 4.021104 TCCAGAAGACTATGTCACTTGGTG 60.021 45.833 0.46 0.00 34.60 4.17
981 1165 0.181587 TGGTGCTCGACTTTTTCCCA 59.818 50.000 0.00 0.00 0.00 4.37
996 1180 2.291365 TCCATTTCAGCGATCATGGTG 58.709 47.619 7.23 1.26 37.92 4.17
1035 1219 3.620821 GGATGCTCTTGCTTCTGAAGTAC 59.379 47.826 17.97 3.95 41.41 2.73
1441 1674 7.201794 GGTGGGGAGCAAACTAAAATTATACTC 60.202 40.741 0.00 0.00 0.00 2.59
1512 1745 4.141869 GCCCTGCTTGGATTCAATGTAATT 60.142 41.667 0.00 0.00 38.35 1.40
1878 2175 6.861055 AGTAAACACACGCTTGAATTAATTGG 59.139 34.615 5.17 0.00 0.00 3.16
2121 2447 0.384309 TCTACTCGCAAGCCCATACG 59.616 55.000 0.00 0.00 37.18 3.06
2260 2589 8.542926 CAAAATCCTCTATCCCTCCAAATTTTT 58.457 33.333 0.00 0.00 0.00 1.94
2261 2590 7.900784 TCAAAATCCTCTATCCCTCCAAATTTT 59.099 33.333 0.00 0.00 0.00 1.82
2262 2591 7.421684 TCAAAATCCTCTATCCCTCCAAATTT 58.578 34.615 0.00 0.00 0.00 1.82
2263 2592 6.985225 TCAAAATCCTCTATCCCTCCAAATT 58.015 36.000 0.00 0.00 0.00 1.82
2264 2593 6.596869 TCAAAATCCTCTATCCCTCCAAAT 57.403 37.500 0.00 0.00 0.00 2.32
2374 2703 2.672961 TAATCTCTTGGCACGGTCTG 57.327 50.000 0.00 0.00 0.00 3.51
2413 2742 2.223994 GGCTAAACCCCATCGACTAGTC 60.224 54.545 13.18 13.18 0.00 2.59
2423 2752 2.480642 AAAACCTTGGCTAAACCCCA 57.519 45.000 0.00 0.00 37.83 4.96
2500 2829 6.346096 CCAATGAGAAATCTACGAAGGGTAA 58.654 40.000 0.00 0.00 0.00 2.85
2514 2843 5.183713 CACTACTTCAATGGCCAATGAGAAA 59.816 40.000 22.32 8.43 0.00 2.52
2539 2868 4.018506 TGAGAATTGTGCATAAGGGAGGAA 60.019 41.667 1.43 0.00 0.00 3.36
2860 3593 4.752879 TTGTAGTCGCTGCCCCGC 62.753 66.667 0.00 0.00 0.00 6.13
3146 3880 2.159448 TGTTTTCGGATTAATGGCTGCG 60.159 45.455 0.00 0.00 0.00 5.18
3177 3911 4.214986 TCCTAATTGATTCGGCACTCAA 57.785 40.909 0.00 0.00 35.95 3.02
3197 3931 7.260603 ACTAATTGCATTAATGGCTTGACTTC 58.739 34.615 17.02 0.00 0.00 3.01
3242 3976 4.989279 ATGGACCTAATGAATTGTGCAC 57.011 40.909 10.75 10.75 31.81 4.57
3283 4017 1.021920 TCCAAATTGATTCCGCGCGA 61.022 50.000 34.63 13.72 0.00 5.87
3284 4018 0.179176 TTCCAAATTGATTCCGCGCG 60.179 50.000 25.67 25.67 0.00 6.86
3285 4019 1.653609 GTTTCCAAATTGATTCCGCGC 59.346 47.619 0.00 0.00 0.00 6.86
3286 4020 2.258755 GGTTTCCAAATTGATTCCGCG 58.741 47.619 0.00 0.00 0.00 6.46
3287 4021 3.311486 TGGTTTCCAAATTGATTCCGC 57.689 42.857 0.00 0.00 0.00 5.54
3411 4145 6.174049 GGAAACAATAGCTAGAAAGTGGACT 58.826 40.000 0.00 0.00 0.00 3.85
3459 4193 3.836365 TTGAAGAGTGGTGACATGTGA 57.164 42.857 1.15 0.00 46.14 3.58
3474 4208 5.043248 GCCGGGATGAAACAATATTTGAAG 58.957 41.667 2.18 0.00 0.00 3.02
3520 4254 8.807948 AGGTGTAAATCTAAATACATGTGCTT 57.192 30.769 9.11 4.04 34.77 3.91
3652 4406 5.163457 TGTGTCGAAAGCCACATCATATCTA 60.163 40.000 2.71 0.00 36.70 1.98
3704 4458 1.531149 CGGACACTTCTTCGCAAATGT 59.469 47.619 0.00 0.00 0.00 2.71
3775 4532 8.853126 ACCAACCACAAATTCATAGATCATATG 58.147 33.333 0.00 0.00 0.00 1.78
3812 4578 4.552355 TGAGCTCAATTTTTCAGCATGTG 58.448 39.130 15.67 0.00 37.40 3.21
3847 4615 5.269505 AGCTACATAGGCTGTTCAAGTAG 57.730 43.478 0.00 0.00 39.39 2.57
3969 4743 6.754675 GCTATTAGTTCTCTCTTGGTCTTGTC 59.245 42.308 0.00 0.00 0.00 3.18
4252 5064 0.663153 GTTATGATGCTTGGGCGGAC 59.337 55.000 0.00 0.00 42.25 4.79
4406 5232 1.696884 TGGCATATCCGGCAATCACTA 59.303 47.619 0.00 0.00 38.71 2.74
4535 5361 2.754552 TCATGGCTGGTTAATCACTTGC 59.245 45.455 0.00 0.00 0.00 4.01
5048 5959 0.734253 GTATGGCGCATAGAGCTCGG 60.734 60.000 10.83 3.31 42.61 4.63
5078 5989 2.875933 TGAAAAGTTGCTTACCGTCCTG 59.124 45.455 0.00 0.00 0.00 3.86
5272 6190 3.713764 TGGGGTCAAAATCAAACCAACAT 59.286 39.130 0.00 0.00 34.62 2.71
5399 6317 9.801873 TGAAATTATTGTATTTCAAAGCCTAGC 57.198 29.630 8.80 0.00 46.18 3.42
5665 6584 1.957177 GTAGATCGGAGTCTCATGGCA 59.043 52.381 1.47 0.00 0.00 4.92
5790 6709 0.530650 TCTCCGATCCGCATGCTTTC 60.531 55.000 17.13 8.58 0.00 2.62
5791 6710 0.811616 GTCTCCGATCCGCATGCTTT 60.812 55.000 17.13 0.00 0.00 3.51
5832 6751 0.877649 CTTCCGATCCGCATGGTCTG 60.878 60.000 0.00 0.00 36.30 3.51
5835 6754 2.505982 CCTTCCGATCCGCATGGT 59.494 61.111 0.00 0.00 36.30 3.55
5836 6755 2.974698 GCCTTCCGATCCGCATGG 60.975 66.667 0.00 0.00 0.00 3.66
5837 6756 2.203056 TGCCTTCCGATCCGCATG 60.203 61.111 0.00 0.00 0.00 4.06
5838 6757 2.203070 GTGCCTTCCGATCCGCAT 60.203 61.111 0.00 0.00 33.08 4.73
5839 6758 4.812476 CGTGCCTTCCGATCCGCA 62.812 66.667 0.00 0.00 0.00 5.69
5840 6759 4.508128 TCGTGCCTTCCGATCCGC 62.508 66.667 0.00 0.00 0.00 5.54
5841 6760 2.582498 GTCGTGCCTTCCGATCCG 60.582 66.667 0.00 0.00 36.62 4.18
5842 6761 2.202892 GGTCGTGCCTTCCGATCC 60.203 66.667 0.00 0.00 36.62 3.36
5843 6762 1.079405 TTGGTCGTGCCTTCCGATC 60.079 57.895 0.00 0.00 36.62 3.69
5844 6763 1.375523 GTTGGTCGTGCCTTCCGAT 60.376 57.895 0.00 0.00 36.62 4.18
5845 6764 1.180456 TAGTTGGTCGTGCCTTCCGA 61.180 55.000 0.00 0.00 38.35 4.55
5846 6765 0.736325 CTAGTTGGTCGTGCCTTCCG 60.736 60.000 1.06 0.00 38.35 4.30
5860 6784 3.463944 ACAAAGCGTTGTACTGCTAGTT 58.536 40.909 16.68 0.00 46.33 2.24
5912 6836 1.401199 GAGCCGCTACGACTCTACTTT 59.599 52.381 0.00 0.00 33.79 2.66
6008 6956 2.819595 GAGAGGGAATGCGCGCAA 60.820 61.111 39.68 21.85 0.00 4.85
6023 6971 0.382158 TAGGCGAGCGACAGATTGAG 59.618 55.000 0.00 0.00 0.00 3.02
6034 6982 0.530870 GGTCAATGGTCTAGGCGAGC 60.531 60.000 0.00 0.00 40.53 5.03
6054 7002 0.810031 ATAGTCACGGCCATGTTCGC 60.810 55.000 2.24 0.00 0.00 4.70
6163 7111 5.180367 TCTCGTGAACATTTTGCAAATCA 57.820 34.783 13.65 10.81 0.00 2.57
6272 7220 9.761504 TGTTTCTAATTCATGCAATTTTTCTGA 57.238 25.926 0.00 0.00 36.09 3.27
6376 7325 1.009829 CTATTGTCAAGGCAGACCGC 58.990 55.000 7.50 0.00 42.76 5.68
6377 7326 1.009829 GCTATTGTCAAGGCAGACCG 58.990 55.000 7.50 0.00 42.76 4.79
6378 7327 1.009829 CGCTATTGTCAAGGCAGACC 58.990 55.000 11.95 0.00 37.73 3.85
6379 7328 1.009829 CCGCTATTGTCAAGGCAGAC 58.990 55.000 11.95 3.48 38.99 3.51
6380 7329 0.107703 CCCGCTATTGTCAAGGCAGA 60.108 55.000 11.95 0.00 0.00 4.26
6381 7330 1.097547 CCCCGCTATTGTCAAGGCAG 61.098 60.000 11.95 3.02 0.00 4.85
6382 7331 1.077787 CCCCGCTATTGTCAAGGCA 60.078 57.895 11.95 0.00 0.00 4.75
6383 7332 0.679960 AACCCCGCTATTGTCAAGGC 60.680 55.000 0.00 0.00 0.00 4.35
6384 7333 1.834188 AAACCCCGCTATTGTCAAGG 58.166 50.000 0.00 0.00 0.00 3.61
6385 7334 3.606687 AGTAAACCCCGCTATTGTCAAG 58.393 45.455 0.00 0.00 0.00 3.02
6386 7335 3.706600 AGTAAACCCCGCTATTGTCAA 57.293 42.857 0.00 0.00 0.00 3.18
6387 7336 3.706600 AAGTAAACCCCGCTATTGTCA 57.293 42.857 0.00 0.00 0.00 3.58
6388 7337 4.124970 CCTAAGTAAACCCCGCTATTGTC 58.875 47.826 0.00 0.00 0.00 3.18
6389 7338 4.146745 CCTAAGTAAACCCCGCTATTGT 57.853 45.455 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.