Multiple sequence alignment - TraesCS3D01G012300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G012300 | chr3D | 100.000 | 3452 | 0 | 0 | 1 | 3452 | 4316765 | 4320216 | 0.000000e+00 | 6375.0 |
1 | TraesCS3D01G012300 | chr3D | 84.665 | 2765 | 310 | 70 | 81 | 2753 | 4344517 | 4347259 | 0.000000e+00 | 2652.0 |
2 | TraesCS3D01G012300 | chr3D | 93.069 | 101 | 5 | 2 | 2751 | 2850 | 65607314 | 65607215 | 2.780000e-31 | 147.0 |
3 | TraesCS3D01G012300 | chr3A | 93.669 | 2701 | 113 | 13 | 73 | 2754 | 9887412 | 9890073 | 0.000000e+00 | 3988.0 |
4 | TraesCS3D01G012300 | chr3A | 85.764 | 2283 | 244 | 50 | 509 | 2753 | 9950404 | 9952643 | 0.000000e+00 | 2340.0 |
5 | TraesCS3D01G012300 | chr3A | 86.948 | 498 | 50 | 9 | 2893 | 3381 | 9890131 | 9890622 | 2.340000e-151 | 545.0 |
6 | TraesCS3D01G012300 | chr3A | 79.020 | 510 | 51 | 21 | 32 | 530 | 9948541 | 9949005 | 7.240000e-77 | 298.0 |
7 | TraesCS3D01G012300 | chr3A | 94.845 | 97 | 5 | 0 | 2751 | 2847 | 659039418 | 659039514 | 5.970000e-33 | 152.0 |
8 | TraesCS3D01G012300 | chr3A | 88.333 | 60 | 1 | 1 | 1 | 54 | 9887354 | 9887413 | 2.220000e-07 | 67.6 |
9 | TraesCS3D01G012300 | chrUn | 94.370 | 2007 | 97 | 9 | 596 | 2595 | 308557574 | 308559571 | 0.000000e+00 | 3066.0 |
10 | TraesCS3D01G012300 | chrUn | 86.721 | 2101 | 225 | 36 | 670 | 2731 | 35644408 | 35646493 | 0.000000e+00 | 2285.0 |
11 | TraesCS3D01G012300 | chrUn | 86.250 | 720 | 95 | 3 | 1333 | 2049 | 35630966 | 35631684 | 0.000000e+00 | 778.0 |
12 | TraesCS3D01G012300 | chrUn | 93.598 | 328 | 9 | 4 | 23 | 342 | 35849445 | 35849122 | 2.410000e-131 | 479.0 |
13 | TraesCS3D01G012300 | chrUn | 93.598 | 328 | 9 | 4 | 23 | 342 | 339652139 | 339651816 | 2.410000e-131 | 479.0 |
14 | TraesCS3D01G012300 | chrUn | 93.657 | 268 | 15 | 2 | 327 | 593 | 35849106 | 35848840 | 1.930000e-107 | 399.0 |
15 | TraesCS3D01G012300 | chrUn | 93.657 | 268 | 15 | 2 | 327 | 593 | 339651800 | 339651534 | 1.930000e-107 | 399.0 |
16 | TraesCS3D01G012300 | chrUn | 85.197 | 304 | 34 | 3 | 3042 | 3345 | 308560030 | 308560322 | 5.600000e-78 | 302.0 |
17 | TraesCS3D01G012300 | chr2D | 72.770 | 1076 | 260 | 25 | 1386 | 2440 | 9371912 | 9372975 | 1.990000e-87 | 333.0 |
18 | TraesCS3D01G012300 | chr2D | 94.949 | 99 | 4 | 1 | 2752 | 2850 | 148738030 | 148738127 | 1.660000e-33 | 154.0 |
19 | TraesCS3D01G012300 | chr7B | 93.939 | 99 | 5 | 1 | 2752 | 2850 | 153939434 | 153939337 | 7.720000e-32 | 148.0 |
20 | TraesCS3D01G012300 | chr7B | 90.265 | 113 | 10 | 1 | 2735 | 2846 | 506378255 | 506378367 | 2.780000e-31 | 147.0 |
21 | TraesCS3D01G012300 | chr5D | 92.233 | 103 | 7 | 1 | 2747 | 2849 | 367519707 | 367519808 | 9.990000e-31 | 145.0 |
22 | TraesCS3D01G012300 | chr5A | 93.750 | 96 | 6 | 0 | 2751 | 2846 | 27637137 | 27637042 | 9.990000e-31 | 145.0 |
23 | TraesCS3D01G012300 | chr6A | 88.793 | 116 | 10 | 3 | 2735 | 2850 | 438961766 | 438961878 | 4.650000e-29 | 139.0 |
24 | TraesCS3D01G012300 | chr5B | 88.696 | 115 | 11 | 2 | 2724 | 2838 | 680748126 | 680748238 | 4.650000e-29 | 139.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G012300 | chr3D | 4316765 | 4320216 | 3451 | False | 6375.000000 | 6375 | 100.0000 | 1 | 3452 | 1 | chr3D.!!$F1 | 3451 |
1 | TraesCS3D01G012300 | chr3D | 4344517 | 4347259 | 2742 | False | 2652.000000 | 2652 | 84.6650 | 81 | 2753 | 1 | chr3D.!!$F2 | 2672 |
2 | TraesCS3D01G012300 | chr3A | 9887354 | 9890622 | 3268 | False | 1533.533333 | 3988 | 89.6500 | 1 | 3381 | 3 | chr3A.!!$F2 | 3380 |
3 | TraesCS3D01G012300 | chr3A | 9948541 | 9952643 | 4102 | False | 1319.000000 | 2340 | 82.3920 | 32 | 2753 | 2 | chr3A.!!$F3 | 2721 |
4 | TraesCS3D01G012300 | chrUn | 35644408 | 35646493 | 2085 | False | 2285.000000 | 2285 | 86.7210 | 670 | 2731 | 1 | chrUn.!!$F2 | 2061 |
5 | TraesCS3D01G012300 | chrUn | 308557574 | 308560322 | 2748 | False | 1684.000000 | 3066 | 89.7835 | 596 | 3345 | 2 | chrUn.!!$F3 | 2749 |
6 | TraesCS3D01G012300 | chrUn | 35630966 | 35631684 | 718 | False | 778.000000 | 778 | 86.2500 | 1333 | 2049 | 1 | chrUn.!!$F1 | 716 |
7 | TraesCS3D01G012300 | chrUn | 35848840 | 35849445 | 605 | True | 439.000000 | 479 | 93.6275 | 23 | 593 | 2 | chrUn.!!$R1 | 570 |
8 | TraesCS3D01G012300 | chrUn | 339651534 | 339652139 | 605 | True | 439.000000 | 479 | 93.6275 | 23 | 593 | 2 | chrUn.!!$R2 | 570 |
9 | TraesCS3D01G012300 | chr2D | 9371912 | 9372975 | 1063 | False | 333.000000 | 333 | 72.7700 | 1386 | 2440 | 1 | chr2D.!!$F1 | 1054 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
897 | 2422 | 1.131638 | TGTCCTTTCAGCTCACCACT | 58.868 | 50.0 | 0.0 | 0.0 | 0.0 | 4.0 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2553 | 4117 | 0.674895 | AAAGCATGCCCGAGTGACTC | 60.675 | 55.0 | 15.66 | 1.65 | 0.0 | 3.36 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
79 | 86 | 4.260375 | CGGTGCAGTGTATTATTCTTCAGC | 60.260 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
298 | 333 | 2.378038 | TGCACCTGAATATTGAAGGCC | 58.622 | 47.619 | 11.98 | 0.00 | 34.18 | 5.19 |
661 | 2173 | 8.038492 | AGCTTGCTCTTTAAAAGATACAAGAG | 57.962 | 34.615 | 18.70 | 15.27 | 45.28 | 2.85 |
737 | 2255 | 4.216902 | TCCTTCTCATGCATTGTTGTCAAG | 59.783 | 41.667 | 0.00 | 0.00 | 36.97 | 3.02 |
776 | 2298 | 4.814234 | AGTCAAACACTAGACGCATTGAAA | 59.186 | 37.500 | 0.00 | 0.00 | 39.67 | 2.69 |
896 | 2421 | 1.876156 | CTTGTCCTTTCAGCTCACCAC | 59.124 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
897 | 2422 | 1.131638 | TGTCCTTTCAGCTCACCACT | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
898 | 2423 | 2.325484 | TGTCCTTTCAGCTCACCACTA | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
899 | 2424 | 2.300152 | TGTCCTTTCAGCTCACCACTAG | 59.700 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1238 | 2788 | 1.949525 | CATGTACCAAGGCTACCATGC | 59.050 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
1416 | 2966 | 3.382865 | TGGAAAGCATGCAAAGTGTTGTA | 59.617 | 39.130 | 21.98 | 0.00 | 37.06 | 2.41 |
1486 | 3036 | 3.802685 | GGTGCGTAGACCTTATGATTCAC | 59.197 | 47.826 | 0.00 | 0.00 | 32.69 | 3.18 |
1569 | 3126 | 0.820871 | TGTTGCAACAGAACCAACCC | 59.179 | 50.000 | 27.96 | 0.00 | 38.38 | 4.11 |
1601 | 3158 | 4.018960 | ACCAGCTGTTCTTCCAATCATAGT | 60.019 | 41.667 | 13.81 | 0.00 | 0.00 | 2.12 |
1617 | 3174 | 1.624336 | TAGTTGGTCGCACAGTAGGT | 58.376 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1873 | 3430 | 5.703130 | AGTAAACTTCAAAGATCAGCCAGAC | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2220 | 3780 | 1.538047 | ATGCTTTGAATCCACTGCGT | 58.462 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2284 | 3844 | 0.471211 | AAAGGTGACACTCGGGGAGA | 60.471 | 55.000 | 5.39 | 0.00 | 33.32 | 3.71 |
2298 | 3858 | 2.827755 | GGGGAGATCCTAGAAGATCCC | 58.172 | 57.143 | 12.28 | 12.28 | 43.14 | 3.85 |
2415 | 3975 | 0.031414 | ATACGCCTGAAGGTACCCCT | 60.031 | 55.000 | 8.74 | 0.00 | 45.63 | 4.79 |
2643 | 4267 | 9.278978 | GACTCATTCTCTTTCTCCTTTTACTTT | 57.721 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2715 | 4376 | 9.294030 | GAACTCTTAAAATGGACAATATTGCAG | 57.706 | 33.333 | 15.48 | 1.33 | 0.00 | 4.41 |
2754 | 4415 | 5.129485 | CAGGACTTGGACACAATATCCTACT | 59.871 | 44.000 | 11.04 | 0.00 | 44.30 | 2.57 |
2755 | 4416 | 5.364157 | AGGACTTGGACACAATATCCTACTC | 59.636 | 44.000 | 10.14 | 0.00 | 44.29 | 2.59 |
2756 | 4417 | 5.453480 | GGACTTGGACACAATATCCTACTCC | 60.453 | 48.000 | 0.00 | 0.00 | 38.13 | 3.85 |
2757 | 4418 | 4.409247 | ACTTGGACACAATATCCTACTCCC | 59.591 | 45.833 | 0.00 | 0.00 | 37.13 | 4.30 |
2759 | 4420 | 4.223953 | TGGACACAATATCCTACTCCCTC | 58.776 | 47.826 | 0.00 | 0.00 | 37.13 | 4.30 |
2760 | 4421 | 3.579151 | GGACACAATATCCTACTCCCTCC | 59.421 | 52.174 | 0.00 | 0.00 | 33.03 | 4.30 |
2761 | 4422 | 3.231818 | ACACAATATCCTACTCCCTCCG | 58.768 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2763 | 4424 | 3.641906 | CACAATATCCTACTCCCTCCGTT | 59.358 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
2764 | 4425 | 3.896272 | ACAATATCCTACTCCCTCCGTTC | 59.104 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
2765 | 4426 | 2.671896 | TATCCTACTCCCTCCGTTCC | 57.328 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2766 | 4427 | 0.635009 | ATCCTACTCCCTCCGTTCCA | 59.365 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2767 | 4428 | 0.410663 | TCCTACTCCCTCCGTTCCAA | 59.589 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2768 | 4429 | 1.203212 | TCCTACTCCCTCCGTTCCAAA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
2769 | 4430 | 1.838077 | CCTACTCCCTCCGTTCCAAAT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
2770 | 4431 | 2.238898 | CCTACTCCCTCCGTTCCAAATT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2771 | 4432 | 3.453353 | CCTACTCCCTCCGTTCCAAATTA | 59.547 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
2772 | 4433 | 3.345508 | ACTCCCTCCGTTCCAAATTAC | 57.654 | 47.619 | 0.00 | 0.00 | 0.00 | 1.89 |
2773 | 4434 | 2.910977 | ACTCCCTCCGTTCCAAATTACT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2774 | 4435 | 3.055312 | ACTCCCTCCGTTCCAAATTACTC | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
2775 | 4436 | 2.093869 | TCCCTCCGTTCCAAATTACTCG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2776 | 4437 | 2.354403 | CCCTCCGTTCCAAATTACTCGT | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2777 | 4438 | 2.928116 | CCTCCGTTCCAAATTACTCGTC | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2778 | 4439 | 3.581755 | CTCCGTTCCAAATTACTCGTCA | 58.418 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
2779 | 4440 | 4.181578 | CTCCGTTCCAAATTACTCGTCAT | 58.818 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
2780 | 4441 | 3.930229 | TCCGTTCCAAATTACTCGTCATG | 59.070 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
2781 | 4442 | 3.063452 | CCGTTCCAAATTACTCGTCATGG | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
2782 | 4443 | 3.682858 | CGTTCCAAATTACTCGTCATGGT | 59.317 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
2783 | 4444 | 4.153475 | CGTTCCAAATTACTCGTCATGGTT | 59.847 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2784 | 4445 | 5.334569 | CGTTCCAAATTACTCGTCATGGTTT | 60.335 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2785 | 4446 | 6.443792 | GTTCCAAATTACTCGTCATGGTTTT | 58.556 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2786 | 4447 | 7.571613 | CGTTCCAAATTACTCGTCATGGTTTTA | 60.572 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
2787 | 4448 | 7.372451 | TCCAAATTACTCGTCATGGTTTTAG | 57.628 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2788 | 4449 | 6.938030 | TCCAAATTACTCGTCATGGTTTTAGT | 59.062 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2789 | 4450 | 7.446013 | TCCAAATTACTCGTCATGGTTTTAGTT | 59.554 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2790 | 4451 | 7.749126 | CCAAATTACTCGTCATGGTTTTAGTTC | 59.251 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2791 | 4452 | 7.972832 | AATTACTCGTCATGGTTTTAGTTCA | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2792 | 4453 | 7.972832 | ATTACTCGTCATGGTTTTAGTTCAA | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2793 | 4454 | 7.789273 | TTACTCGTCATGGTTTTAGTTCAAA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2794 | 4455 | 6.877611 | ACTCGTCATGGTTTTAGTTCAAAT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2795 | 4456 | 7.272037 | ACTCGTCATGGTTTTAGTTCAAATT | 57.728 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2796 | 4457 | 7.712797 | ACTCGTCATGGTTTTAGTTCAAATTT | 58.287 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2797 | 4458 | 7.647715 | ACTCGTCATGGTTTTAGTTCAAATTTG | 59.352 | 33.333 | 12.15 | 12.15 | 0.00 | 2.32 |
2798 | 4459 | 7.708051 | TCGTCATGGTTTTAGTTCAAATTTGA | 58.292 | 30.769 | 16.91 | 16.91 | 34.92 | 2.69 |
2799 | 4460 | 8.191446 | TCGTCATGGTTTTAGTTCAAATTTGAA | 58.809 | 29.630 | 26.01 | 26.01 | 44.31 | 2.69 |
2812 | 4473 | 7.743520 | TTCAAATTTGAACTAAAACCACGAC | 57.256 | 32.000 | 26.01 | 0.00 | 41.88 | 4.34 |
2813 | 4474 | 6.267070 | TCAAATTTGAACTAAAACCACGACC | 58.733 | 36.000 | 18.45 | 0.00 | 33.55 | 4.79 |
2814 | 4475 | 5.838531 | AATTTGAACTAAAACCACGACCA | 57.161 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
2815 | 4476 | 4.886247 | TTTGAACTAAAACCACGACCAG | 57.114 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
2816 | 4477 | 3.547054 | TGAACTAAAACCACGACCAGT | 57.453 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
2817 | 4478 | 4.669206 | TGAACTAAAACCACGACCAGTA | 57.331 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
2818 | 4479 | 5.021033 | TGAACTAAAACCACGACCAGTAA | 57.979 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2819 | 4480 | 5.613329 | TGAACTAAAACCACGACCAGTAAT | 58.387 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2820 | 4481 | 6.056884 | TGAACTAAAACCACGACCAGTAATT | 58.943 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2821 | 4482 | 6.543100 | TGAACTAAAACCACGACCAGTAATTT | 59.457 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2822 | 4483 | 6.308371 | ACTAAAACCACGACCAGTAATTTG | 57.692 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2823 | 4484 | 4.577834 | AAAACCACGACCAGTAATTTGG | 57.422 | 40.909 | 0.00 | 0.00 | 44.09 | 3.28 |
2824 | 4485 | 3.495434 | AACCACGACCAGTAATTTGGA | 57.505 | 42.857 | 3.10 | 0.00 | 40.87 | 3.53 |
2825 | 4486 | 3.495434 | ACCACGACCAGTAATTTGGAA | 57.505 | 42.857 | 3.10 | 0.00 | 40.87 | 3.53 |
2826 | 4487 | 3.143728 | ACCACGACCAGTAATTTGGAAC | 58.856 | 45.455 | 3.10 | 0.00 | 40.87 | 3.62 |
2827 | 4488 | 2.158841 | CCACGACCAGTAATTTGGAACG | 59.841 | 50.000 | 3.10 | 9.99 | 40.87 | 3.95 |
2828 | 4489 | 2.158841 | CACGACCAGTAATTTGGAACGG | 59.841 | 50.000 | 17.33 | 5.85 | 40.87 | 4.44 |
2829 | 4490 | 2.037511 | ACGACCAGTAATTTGGAACGGA | 59.962 | 45.455 | 17.33 | 0.00 | 40.87 | 4.69 |
2830 | 4491 | 3.068560 | CGACCAGTAATTTGGAACGGAA | 58.931 | 45.455 | 3.10 | 0.00 | 40.87 | 4.30 |
2831 | 4492 | 3.124636 | CGACCAGTAATTTGGAACGGAAG | 59.875 | 47.826 | 3.10 | 0.00 | 40.87 | 3.46 |
2832 | 4493 | 3.418047 | ACCAGTAATTTGGAACGGAAGG | 58.582 | 45.455 | 3.10 | 0.00 | 40.87 | 3.46 |
2833 | 4494 | 3.073356 | ACCAGTAATTTGGAACGGAAGGA | 59.927 | 43.478 | 3.10 | 0.00 | 40.87 | 3.36 |
2834 | 4495 | 3.689649 | CCAGTAATTTGGAACGGAAGGAG | 59.310 | 47.826 | 0.00 | 0.00 | 40.87 | 3.69 |
2835 | 4496 | 4.324267 | CAGTAATTTGGAACGGAAGGAGT | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2864 | 4525 | 7.836842 | AGTTAAATGTTTATAGCTTTGGTGGG | 58.163 | 34.615 | 0.00 | 0.00 | 0.00 | 4.61 |
2873 | 4534 | 3.628646 | CTTTGGTGGGGCGGAGGAG | 62.629 | 68.421 | 0.00 | 0.00 | 0.00 | 3.69 |
2877 | 4538 | 3.541713 | GTGGGGCGGAGGAGCTAG | 61.542 | 72.222 | 0.00 | 0.00 | 37.29 | 3.42 |
2885 | 4546 | 0.894141 | CGGAGGAGCTAGGATCCATG | 59.106 | 60.000 | 15.82 | 7.09 | 39.47 | 3.66 |
2898 | 4570 | 5.053978 | AGGATCCATGTATTGAGGGTTTC | 57.946 | 43.478 | 15.82 | 0.00 | 0.00 | 2.78 |
2992 | 4691 | 5.022122 | TCCCATCTATGGCAAAATGAACAA | 58.978 | 37.500 | 3.27 | 0.00 | 46.70 | 2.83 |
2994 | 4693 | 4.807304 | CCATCTATGGCAAAATGAACAAGC | 59.193 | 41.667 | 0.00 | 0.00 | 41.75 | 4.01 |
3000 | 4699 | 3.005684 | TGGCAAAATGAACAAGCTACCTG | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3003 | 4702 | 4.616835 | GCAAAATGAACAAGCTACCTGGAG | 60.617 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
3024 | 4723 | 3.005791 | AGGTTTGCCAAGTCAAGTAATGC | 59.994 | 43.478 | 0.00 | 0.00 | 37.19 | 3.56 |
3107 | 4810 | 5.585844 | CCCAAAAGGTTATTGCCATGATTTC | 59.414 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3123 | 4826 | 6.744537 | CCATGATTTCAAATTGTTCGAGACTC | 59.255 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
3183 | 4888 | 7.813148 | TGTTACGAAATTTGACTTCCAACAAAA | 59.187 | 29.630 | 0.00 | 0.00 | 39.01 | 2.44 |
3187 | 4892 | 9.541143 | ACGAAATTTGACTTCCAACAAAATTAT | 57.459 | 25.926 | 0.00 | 0.00 | 39.01 | 1.28 |
3198 | 4903 | 7.372451 | TCCAACAAAATTATTAGTCTGACGG | 57.628 | 36.000 | 1.52 | 0.00 | 0.00 | 4.79 |
3242 | 4949 | 3.375610 | ACACACCGCGATATTTTGCAATA | 59.624 | 39.130 | 8.23 | 0.00 | 32.00 | 1.90 |
3288 | 4996 | 9.793259 | TGAAGTCACTCATCCTTAATTAGTTTT | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
3335 | 5043 | 4.459852 | AATTGCTACCTGCCCATAGAAT | 57.540 | 40.909 | 0.00 | 0.00 | 42.00 | 2.40 |
3348 | 5056 | 1.056700 | ATAGAATGGTCGCCCCTGCT | 61.057 | 55.000 | 0.00 | 0.00 | 34.43 | 4.24 |
3351 | 5059 | 2.819984 | GAATGGTCGCCCCTGCTTGA | 62.820 | 60.000 | 0.00 | 0.00 | 34.43 | 3.02 |
3363 | 5071 | 3.073446 | GCTTGACTAGCGCGTGTC | 58.927 | 61.111 | 22.60 | 22.60 | 40.71 | 3.67 |
3364 | 5072 | 2.445438 | GCTTGACTAGCGCGTGTCC | 61.445 | 63.158 | 25.00 | 11.91 | 40.71 | 4.02 |
3366 | 5074 | 1.344942 | CTTGACTAGCGCGTGTCCAC | 61.345 | 60.000 | 25.00 | 8.92 | 32.67 | 4.02 |
3381 | 5089 | 1.593006 | GTCCACGCGTGATTGGATTAG | 59.407 | 52.381 | 39.10 | 19.30 | 43.85 | 1.73 |
3382 | 5090 | 0.937304 | CCACGCGTGATTGGATTAGG | 59.063 | 55.000 | 39.10 | 15.64 | 34.46 | 2.69 |
3383 | 5091 | 1.651987 | CACGCGTGATTGGATTAGGT | 58.348 | 50.000 | 34.93 | 0.00 | 0.00 | 3.08 |
3384 | 5092 | 2.482316 | CCACGCGTGATTGGATTAGGTA | 60.482 | 50.000 | 39.10 | 0.00 | 34.46 | 3.08 |
3385 | 5093 | 2.538449 | CACGCGTGATTGGATTAGGTAC | 59.462 | 50.000 | 34.93 | 0.00 | 0.00 | 3.34 |
3386 | 5094 | 2.429610 | ACGCGTGATTGGATTAGGTACT | 59.570 | 45.455 | 12.93 | 0.00 | 46.37 | 2.73 |
3387 | 5095 | 2.794910 | CGCGTGATTGGATTAGGTACTG | 59.205 | 50.000 | 0.00 | 0.00 | 41.52 | 2.74 |
3388 | 5096 | 2.544267 | GCGTGATTGGATTAGGTACTGC | 59.456 | 50.000 | 0.00 | 0.00 | 41.52 | 4.40 |
3389 | 5097 | 3.131396 | CGTGATTGGATTAGGTACTGCC | 58.869 | 50.000 | 0.00 | 0.00 | 41.52 | 4.85 |
3390 | 5098 | 3.131396 | GTGATTGGATTAGGTACTGCCG | 58.869 | 50.000 | 0.00 | 0.00 | 41.52 | 5.69 |
3391 | 5099 | 2.769663 | TGATTGGATTAGGTACTGCCGT | 59.230 | 45.455 | 0.00 | 0.00 | 41.52 | 5.68 |
3392 | 5100 | 3.962063 | TGATTGGATTAGGTACTGCCGTA | 59.038 | 43.478 | 0.00 | 0.00 | 41.52 | 4.02 |
3393 | 5101 | 4.591498 | TGATTGGATTAGGTACTGCCGTAT | 59.409 | 41.667 | 0.00 | 0.00 | 41.52 | 3.06 |
3394 | 5102 | 4.330944 | TTGGATTAGGTACTGCCGTATG | 57.669 | 45.455 | 0.00 | 0.00 | 41.52 | 2.39 |
3395 | 5103 | 2.036733 | TGGATTAGGTACTGCCGTATGC | 59.963 | 50.000 | 0.00 | 0.00 | 41.52 | 3.14 |
3416 | 5124 | 6.045072 | TGCATATCAGCATATGACATCAGA | 57.955 | 37.500 | 6.97 | 0.00 | 43.37 | 3.27 |
3417 | 5125 | 6.650120 | TGCATATCAGCATATGACATCAGAT | 58.350 | 36.000 | 6.97 | 0.00 | 43.37 | 2.90 |
3418 | 5126 | 7.788026 | TGCATATCAGCATATGACATCAGATA | 58.212 | 34.615 | 6.97 | 1.70 | 43.37 | 1.98 |
3419 | 5127 | 8.429641 | TGCATATCAGCATATGACATCAGATAT | 58.570 | 33.333 | 6.97 | 3.92 | 43.37 | 1.63 |
3420 | 5128 | 9.274206 | GCATATCAGCATATGACATCAGATATT | 57.726 | 33.333 | 6.97 | 0.00 | 43.37 | 1.28 |
3449 | 5157 | 9.482627 | AATTTCACAACAGTTTGAAGTTTAACA | 57.517 | 25.926 | 0.00 | 0.00 | 36.48 | 2.41 |
3450 | 5158 | 8.873215 | TTTCACAACAGTTTGAAGTTTAACAA | 57.127 | 26.923 | 0.00 | 0.00 | 36.48 | 2.83 |
3451 | 5159 | 8.514136 | TTCACAACAGTTTGAAGTTTAACAAG | 57.486 | 30.769 | 0.00 | 1.05 | 36.48 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
249 | 261 | 9.613428 | AACTGCTCTTGTAAAACATGCTATATA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
250 | 262 | 8.511604 | AACTGCTCTTGTAAAACATGCTATAT | 57.488 | 30.769 | 0.00 | 0.00 | 0.00 | 0.86 |
251 | 263 | 7.921786 | AACTGCTCTTGTAAAACATGCTATA | 57.078 | 32.000 | 0.00 | 0.00 | 0.00 | 1.31 |
252 | 264 | 6.824305 | AACTGCTCTTGTAAAACATGCTAT | 57.176 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
283 | 318 | 3.444742 | TGTGCTTGGCCTTCAATATTCAG | 59.555 | 43.478 | 3.32 | 0.00 | 34.45 | 3.02 |
298 | 333 | 0.956633 | ATCTGGTGCACTTGTGCTTG | 59.043 | 50.000 | 23.53 | 12.34 | 35.49 | 4.01 |
462 | 556 | 9.342308 | TGTCACAGAGATAAATCTTGTCTTTTT | 57.658 | 29.630 | 0.00 | 0.00 | 37.25 | 1.94 |
534 | 2046 | 9.764363 | ATTTCTTTTCCTTATCACTTTTGGTTC | 57.236 | 29.630 | 0.00 | 0.00 | 0.00 | 3.62 |
661 | 2173 | 1.929836 | CGTTTCATGGAGTAGCTCTGC | 59.070 | 52.381 | 0.00 | 0.00 | 35.00 | 4.26 |
767 | 2289 | 3.311106 | ACATGCTTGAACTTTCAATGCG | 58.689 | 40.909 | 6.60 | 3.42 | 45.26 | 4.73 |
776 | 2298 | 4.397417 | GGATAGCTTCAACATGCTTGAACT | 59.603 | 41.667 | 15.17 | 16.85 | 40.35 | 3.01 |
897 | 2422 | 9.865152 | AGCTGATCTCTCATGATATATTAGCTA | 57.135 | 33.333 | 17.92 | 0.00 | 0.00 | 3.32 |
898 | 2423 | 8.771521 | AGCTGATCTCTCATGATATATTAGCT | 57.228 | 34.615 | 15.33 | 15.33 | 0.00 | 3.32 |
899 | 2424 | 9.467258 | GAAGCTGATCTCTCATGATATATTAGC | 57.533 | 37.037 | 12.34 | 12.34 | 0.00 | 3.09 |
1350 | 2900 | 3.807622 | TCGCTACTTTGTCCTTTCTTGTG | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
1416 | 2966 | 6.349611 | GCACAACAAACTCCATCATGTTATCT | 60.350 | 38.462 | 0.00 | 0.00 | 34.45 | 1.98 |
1601 | 3158 | 2.241160 | TCTTACCTACTGTGCGACCAA | 58.759 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
1617 | 3174 | 4.336993 | ACGTGAGCAACCAATGTTTTCTTA | 59.663 | 37.500 | 0.00 | 0.00 | 30.42 | 2.10 |
1873 | 3430 | 4.796038 | AAATTGGCTTCACTGATCCAAG | 57.204 | 40.909 | 14.81 | 0.00 | 41.32 | 3.61 |
2105 | 3665 | 7.551974 | TCCTTTCAATCATTCTTCTGCTCTTAG | 59.448 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
2106 | 3666 | 7.397221 | TCCTTTCAATCATTCTTCTGCTCTTA | 58.603 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2220 | 3780 | 3.284617 | TGTAGCTGAGTAAGGTATCGCA | 58.715 | 45.455 | 0.00 | 0.00 | 40.84 | 5.10 |
2284 | 3844 | 5.151454 | CCTAACACTGGGATCTTCTAGGAT | 58.849 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
2298 | 3858 | 1.203001 | TCCCCTTTTGGCCTAACACTG | 60.203 | 52.381 | 3.32 | 0.00 | 38.58 | 3.66 |
2415 | 3975 | 1.533033 | TCGCTTCCTCCCTGACACA | 60.533 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
2553 | 4117 | 0.674895 | AAAGCATGCCCGAGTGACTC | 60.675 | 55.000 | 15.66 | 1.65 | 0.00 | 3.36 |
2616 | 4211 | 7.967908 | AGTAAAAGGAGAAAGAGAATGAGTCA | 58.032 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
2617 | 4212 | 8.840833 | AAGTAAAAGGAGAAAGAGAATGAGTC | 57.159 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
2754 | 4415 | 2.093869 | CGAGTAATTTGGAACGGAGGGA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2755 | 4416 | 2.277084 | CGAGTAATTTGGAACGGAGGG | 58.723 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2756 | 4417 | 2.928116 | GACGAGTAATTTGGAACGGAGG | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2757 | 4418 | 3.581755 | TGACGAGTAATTTGGAACGGAG | 58.418 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
2759 | 4420 | 3.063452 | CCATGACGAGTAATTTGGAACGG | 59.937 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
2760 | 4421 | 3.682858 | ACCATGACGAGTAATTTGGAACG | 59.317 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
2761 | 4422 | 5.622770 | AACCATGACGAGTAATTTGGAAC | 57.377 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
2763 | 4424 | 6.938030 | ACTAAAACCATGACGAGTAATTTGGA | 59.062 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
2764 | 4425 | 7.141100 | ACTAAAACCATGACGAGTAATTTGG | 57.859 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2765 | 4426 | 8.286800 | TGAACTAAAACCATGACGAGTAATTTG | 58.713 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2766 | 4427 | 8.385898 | TGAACTAAAACCATGACGAGTAATTT | 57.614 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2767 | 4428 | 7.972832 | TGAACTAAAACCATGACGAGTAATT | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2768 | 4429 | 7.972832 | TTGAACTAAAACCATGACGAGTAAT | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2769 | 4430 | 7.789273 | TTTGAACTAAAACCATGACGAGTAA | 57.211 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2770 | 4431 | 7.972832 | ATTTGAACTAAAACCATGACGAGTA | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2771 | 4432 | 6.877611 | ATTTGAACTAAAACCATGACGAGT | 57.122 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
2772 | 4433 | 7.860373 | TCAAATTTGAACTAAAACCATGACGAG | 59.140 | 33.333 | 18.45 | 0.00 | 33.55 | 4.18 |
2773 | 4434 | 7.708051 | TCAAATTTGAACTAAAACCATGACGA | 58.292 | 30.769 | 18.45 | 0.00 | 33.55 | 4.20 |
2774 | 4435 | 7.922505 | TCAAATTTGAACTAAAACCATGACG | 57.077 | 32.000 | 18.45 | 0.00 | 33.55 | 4.35 |
2788 | 4449 | 6.752815 | GGTCGTGGTTTTAGTTCAAATTTGAA | 59.247 | 34.615 | 26.01 | 26.01 | 44.31 | 2.69 |
2789 | 4450 | 6.127703 | TGGTCGTGGTTTTAGTTCAAATTTGA | 60.128 | 34.615 | 16.91 | 16.91 | 34.92 | 2.69 |
2790 | 4451 | 6.037098 | TGGTCGTGGTTTTAGTTCAAATTTG | 58.963 | 36.000 | 12.15 | 12.15 | 0.00 | 2.32 |
2791 | 4452 | 6.127563 | ACTGGTCGTGGTTTTAGTTCAAATTT | 60.128 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2792 | 4453 | 5.358725 | ACTGGTCGTGGTTTTAGTTCAAATT | 59.641 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2793 | 4454 | 4.885325 | ACTGGTCGTGGTTTTAGTTCAAAT | 59.115 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2794 | 4455 | 4.263435 | ACTGGTCGTGGTTTTAGTTCAAA | 58.737 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
2795 | 4456 | 3.876341 | ACTGGTCGTGGTTTTAGTTCAA | 58.124 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2796 | 4457 | 3.547054 | ACTGGTCGTGGTTTTAGTTCA | 57.453 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2797 | 4458 | 6.549912 | AATTACTGGTCGTGGTTTTAGTTC | 57.450 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2798 | 4459 | 6.238814 | CCAAATTACTGGTCGTGGTTTTAGTT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2799 | 4460 | 5.239963 | CCAAATTACTGGTCGTGGTTTTAGT | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2800 | 4461 | 5.470777 | TCCAAATTACTGGTCGTGGTTTTAG | 59.529 | 40.000 | 0.00 | 0.00 | 37.74 | 1.85 |
2801 | 4462 | 5.374921 | TCCAAATTACTGGTCGTGGTTTTA | 58.625 | 37.500 | 0.00 | 0.00 | 37.74 | 1.52 |
2802 | 4463 | 4.208746 | TCCAAATTACTGGTCGTGGTTTT | 58.791 | 39.130 | 0.00 | 0.00 | 37.74 | 2.43 |
2803 | 4464 | 3.822940 | TCCAAATTACTGGTCGTGGTTT | 58.177 | 40.909 | 0.00 | 0.00 | 37.74 | 3.27 |
2804 | 4465 | 3.495434 | TCCAAATTACTGGTCGTGGTT | 57.505 | 42.857 | 0.00 | 0.00 | 37.74 | 3.67 |
2805 | 4466 | 3.143728 | GTTCCAAATTACTGGTCGTGGT | 58.856 | 45.455 | 0.00 | 0.00 | 37.74 | 4.16 |
2806 | 4467 | 2.158841 | CGTTCCAAATTACTGGTCGTGG | 59.841 | 50.000 | 0.00 | 0.00 | 37.74 | 4.94 |
2807 | 4468 | 2.158841 | CCGTTCCAAATTACTGGTCGTG | 59.841 | 50.000 | 11.95 | 4.65 | 37.74 | 4.35 |
2808 | 4469 | 2.037511 | TCCGTTCCAAATTACTGGTCGT | 59.962 | 45.455 | 11.95 | 0.00 | 37.74 | 4.34 |
2809 | 4470 | 2.690786 | TCCGTTCCAAATTACTGGTCG | 58.309 | 47.619 | 0.00 | 3.69 | 37.74 | 4.79 |
2810 | 4471 | 3.439129 | CCTTCCGTTCCAAATTACTGGTC | 59.561 | 47.826 | 0.00 | 0.00 | 37.74 | 4.02 |
2811 | 4472 | 3.073356 | TCCTTCCGTTCCAAATTACTGGT | 59.927 | 43.478 | 0.00 | 0.00 | 37.74 | 4.00 |
2812 | 4473 | 3.681593 | TCCTTCCGTTCCAAATTACTGG | 58.318 | 45.455 | 0.00 | 0.00 | 37.87 | 4.00 |
2813 | 4474 | 4.324267 | ACTCCTTCCGTTCCAAATTACTG | 58.676 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
2814 | 4475 | 4.635699 | ACTCCTTCCGTTCCAAATTACT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
2815 | 4476 | 6.110707 | TCATACTCCTTCCGTTCCAAATTAC | 58.889 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2816 | 4477 | 6.070424 | ACTCATACTCCTTCCGTTCCAAATTA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2817 | 4478 | 5.174037 | TCATACTCCTTCCGTTCCAAATT | 57.826 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
2818 | 4479 | 4.225267 | ACTCATACTCCTTCCGTTCCAAAT | 59.775 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
2819 | 4480 | 3.581332 | ACTCATACTCCTTCCGTTCCAAA | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
2820 | 4481 | 3.170717 | ACTCATACTCCTTCCGTTCCAA | 58.829 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
2821 | 4482 | 2.816411 | ACTCATACTCCTTCCGTTCCA | 58.184 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2822 | 4483 | 3.889520 | AACTCATACTCCTTCCGTTCC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
2823 | 4484 | 6.817140 | ACATTTAACTCATACTCCTTCCGTTC | 59.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
2824 | 4485 | 6.708285 | ACATTTAACTCATACTCCTTCCGTT | 58.292 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2825 | 4486 | 6.295719 | ACATTTAACTCATACTCCTTCCGT | 57.704 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
2826 | 4487 | 7.611213 | AAACATTTAACTCATACTCCTTCCG | 57.389 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2862 | 4523 | 3.837213 | ATCCTAGCTCCTCCGCCCC | 62.837 | 68.421 | 0.00 | 0.00 | 0.00 | 5.80 |
2864 | 4525 | 2.279810 | GGATCCTAGCTCCTCCGCC | 61.280 | 68.421 | 3.84 | 0.00 | 0.00 | 6.13 |
2873 | 4534 | 3.584848 | ACCCTCAATACATGGATCCTAGC | 59.415 | 47.826 | 14.23 | 0.00 | 0.00 | 3.42 |
2877 | 4538 | 4.580580 | GTGAAACCCTCAATACATGGATCC | 59.419 | 45.833 | 4.20 | 4.20 | 35.22 | 3.36 |
2885 | 4546 | 5.163854 | CGAGTCATTGTGAAACCCTCAATAC | 60.164 | 44.000 | 0.00 | 0.00 | 36.99 | 1.89 |
2898 | 4570 | 1.462283 | CTCACCTTGCGAGTCATTGTG | 59.538 | 52.381 | 0.00 | 0.68 | 0.00 | 3.33 |
2919 | 4591 | 4.381505 | GCCCAGATTTTTCGCCATTTCTTA | 60.382 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
2976 | 4648 | 5.016173 | AGGTAGCTTGTTCATTTTGCCATA | 58.984 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
3000 | 4699 | 1.692411 | ACTTGACTTGGCAAACCTCC | 58.308 | 50.000 | 0.00 | 0.00 | 36.63 | 4.30 |
3003 | 4702 | 3.243704 | TGCATTACTTGACTTGGCAAACC | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
3077 | 4776 | 6.882768 | TGGCAATAACCTTTTGGGATTTAT | 57.117 | 33.333 | 0.00 | 0.00 | 46.08 | 1.40 |
3092 | 4791 | 7.816513 | TCGAACAATTTGAAATCATGGCAATAA | 59.183 | 29.630 | 2.79 | 0.00 | 0.00 | 1.40 |
3097 | 4800 | 5.287035 | GTCTCGAACAATTTGAAATCATGGC | 59.713 | 40.000 | 2.79 | 0.00 | 0.00 | 4.40 |
3107 | 4810 | 1.798223 | TGCCGAGTCTCGAACAATTTG | 59.202 | 47.619 | 23.74 | 5.24 | 43.74 | 2.32 |
3123 | 4826 | 3.782046 | AGTTTACTACTGTAGCATGCCG | 58.218 | 45.455 | 15.66 | 3.08 | 35.19 | 5.69 |
3183 | 4888 | 3.067742 | CCGGTCACCGTCAGACTAATAAT | 59.932 | 47.826 | 16.87 | 0.00 | 46.80 | 1.28 |
3187 | 4892 | 0.250858 | TCCGGTCACCGTCAGACTAA | 60.251 | 55.000 | 16.87 | 0.00 | 46.80 | 2.24 |
3188 | 4893 | 0.957395 | GTCCGGTCACCGTCAGACTA | 60.957 | 60.000 | 16.87 | 0.00 | 46.80 | 2.59 |
3198 | 4903 | 1.153429 | GCCATACAGGTCCGGTCAC | 60.153 | 63.158 | 0.00 | 0.00 | 40.61 | 3.67 |
3204 | 4909 | 1.165270 | GTGTGTTGCCATACAGGTCC | 58.835 | 55.000 | 0.00 | 0.00 | 40.61 | 4.46 |
3304 | 5012 | 4.898370 | GCAGGTAGCAATTTCTAAACGAG | 58.102 | 43.478 | 0.00 | 0.00 | 44.79 | 4.18 |
3348 | 5056 | 1.372499 | GTGGACACGCGCTAGTCAA | 60.372 | 57.895 | 24.16 | 14.73 | 36.50 | 3.18 |
3363 | 5071 | 0.937304 | CCTAATCCAATCACGCGTGG | 59.063 | 55.000 | 36.41 | 22.33 | 36.13 | 4.94 |
3364 | 5072 | 1.651987 | ACCTAATCCAATCACGCGTG | 58.348 | 50.000 | 32.76 | 32.76 | 0.00 | 5.34 |
3366 | 5074 | 2.794910 | CAGTACCTAATCCAATCACGCG | 59.205 | 50.000 | 3.53 | 3.53 | 0.00 | 6.01 |
3369 | 5077 | 3.131396 | CGGCAGTACCTAATCCAATCAC | 58.869 | 50.000 | 0.00 | 0.00 | 35.61 | 3.06 |
3372 | 5080 | 4.802918 | GCATACGGCAGTACCTAATCCAAT | 60.803 | 45.833 | 0.00 | 0.00 | 43.97 | 3.16 |
3394 | 5102 | 8.834749 | ATATCTGATGTCATATGCTGATATGC | 57.165 | 34.615 | 14.18 | 0.00 | 40.92 | 3.14 |
3423 | 5131 | 9.482627 | TGTTAAACTTCAAACTGTTGTGAAATT | 57.517 | 25.926 | 14.47 | 10.55 | 36.07 | 1.82 |
3424 | 5132 | 9.482627 | TTGTTAAACTTCAAACTGTTGTGAAAT | 57.517 | 25.926 | 14.47 | 6.60 | 36.07 | 2.17 |
3425 | 5133 | 8.873215 | TTGTTAAACTTCAAACTGTTGTGAAA | 57.127 | 26.923 | 14.47 | 3.40 | 36.07 | 2.69 |
3426 | 5134 | 8.514136 | CTTGTTAAACTTCAAACTGTTGTGAA | 57.486 | 30.769 | 13.53 | 13.53 | 36.07 | 3.18 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.