Multiple sequence alignment - TraesCS3D01G011900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G011900 chr3D 100.000 4910 0 0 1 4910 4168634 4173543 0.000000e+00 9068.0
1 TraesCS3D01G011900 chr3D 86.493 2110 198 35 1 2094 4076590 4074552 0.000000e+00 2237.0
2 TraesCS3D01G011900 chr3D 91.580 1544 90 19 2649 4159 4073806 4072270 0.000000e+00 2095.0
3 TraesCS3D01G011900 chr3D 93.697 238 11 3 2093 2327 4074481 4074245 2.170000e-93 353.0
4 TraesCS3D01G011900 chr3D 98.817 169 2 0 2484 2652 360695828 360695996 7.990000e-78 302.0
5 TraesCS3D01G011900 chr6A 93.703 2239 81 16 2663 4857 609884788 609882566 0.000000e+00 3299.0
6 TraesCS3D01G011900 chr6A 89.021 1011 89 10 909 1901 609886616 609885610 0.000000e+00 1232.0
7 TraesCS3D01G011900 chr6A 95.683 139 5 1 2189 2327 609885326 609885189 6.400000e-54 222.0
8 TraesCS3D01G011900 chr6A 95.000 140 7 0 1955 2094 609885607 609885468 2.300000e-53 220.0
9 TraesCS3D01G011900 chr6A 80.451 133 13 10 2453 2581 555358416 555358293 6.770000e-14 89.8
10 TraesCS3D01G011900 chr3A 95.404 2067 79 10 1 2059 9613877 9611819 0.000000e+00 3277.0
11 TraesCS3D01G011900 chr3A 93.442 1479 72 4 2644 4101 9611814 9610340 0.000000e+00 2170.0
12 TraesCS3D01G011900 chr3A 92.801 1514 79 8 2644 4129 9781788 9783299 0.000000e+00 2165.0
13 TraesCS3D01G011900 chr3A 97.216 862 21 2 1 859 9779397 9780258 0.000000e+00 1456.0
14 TraesCS3D01G011900 chr3A 92.755 911 56 8 1154 2059 9780878 9781783 0.000000e+00 1308.0
15 TraesCS3D01G011900 chr3A 95.472 265 7 2 902 1161 9780253 9780517 7.600000e-113 418.0
16 TraesCS3D01G011900 chr3A 97.647 170 4 0 2481 2650 264047577 264047746 4.810000e-75 292.0
17 TraesCS3D01G011900 chrUn 92.484 1530 94 3 2647 4159 246337618 246336093 0.000000e+00 2169.0
18 TraesCS3D01G011900 chrUn 92.415 1213 77 12 892 2094 246339297 246338090 0.000000e+00 1716.0
19 TraesCS3D01G011900 chrUn 84.169 897 104 14 1 885 246340211 246339341 0.000000e+00 835.0
20 TraesCS3D01G011900 chrUn 80.113 1061 196 15 2821 3873 238779954 238778901 0.000000e+00 776.0
21 TraesCS3D01G011900 chrUn 97.611 293 4 3 2196 2485 246337909 246337617 2.640000e-137 499.0
22 TraesCS3D01G011900 chrUn 92.771 249 13 4 1639 1883 469290951 469290704 6.040000e-94 355.0
23 TraesCS3D01G011900 chrUn 93.056 72 3 2 2093 2162 246337984 246337913 2.420000e-18 104.0
24 TraesCS3D01G011900 chrUn 91.379 58 4 1 4563 4619 246335939 246335882 1.470000e-10 78.7
25 TraesCS3D01G011900 chr3B 92.484 1530 94 3 2647 4159 6391718 6390193 0.000000e+00 2169.0
26 TraesCS3D01G011900 chr3B 92.415 1213 77 12 892 2094 6393397 6392190 0.000000e+00 1716.0
27 TraesCS3D01G011900 chr3B 89.556 900 66 12 3248 4125 13947142 13948035 0.000000e+00 1116.0
28 TraesCS3D01G011900 chr3B 84.169 897 104 14 1 885 6394311 6393441 0.000000e+00 835.0
29 TraesCS3D01G011900 chr3B 91.200 625 32 5 2647 3250 13940812 13941434 0.000000e+00 828.0
30 TraesCS3D01G011900 chr3B 80.168 1074 197 16 2818 3883 13962723 13961658 0.000000e+00 789.0
31 TraesCS3D01G011900 chr3B 95.142 494 16 1 1 486 6667177 6667670 0.000000e+00 773.0
32 TraesCS3D01G011900 chr3B 89.636 550 39 10 1554 2092 13939561 13940103 0.000000e+00 684.0
33 TraesCS3D01G011900 chr3B 97.611 293 4 3 2196 2485 6392009 6391717 2.640000e-137 499.0
34 TraesCS3D01G011900 chr3B 97.863 234 5 0 411 644 13939283 13939516 5.920000e-109 405.0
35 TraesCS3D01G011900 chr3B 90.995 211 8 3 532 742 6667665 6667864 1.740000e-69 274.0
36 TraesCS3D01G011900 chr3B 87.817 197 18 5 2455 2648 157227373 157227566 4.950000e-55 226.0
37 TraesCS3D01G011900 chr3B 94.118 136 7 1 2189 2324 13940283 13940417 6.440000e-49 206.0
38 TraesCS3D01G011900 chr3B 93.056 72 3 2 2093 2162 6392084 6392013 2.420000e-18 104.0
39 TraesCS3D01G011900 chr3B 93.056 72 3 2 2093 2162 13940212 13940283 2.420000e-18 104.0
40 TraesCS3D01G011900 chr3B 95.082 61 2 1 783 842 6667856 6667916 1.450000e-15 95.3
41 TraesCS3D01G011900 chr3B 91.379 58 4 1 4563 4619 6390039 6389982 1.470000e-10 78.7
42 TraesCS3D01G011900 chr2D 97.714 175 4 0 2477 2651 516708305 516708479 7.990000e-78 302.0
43 TraesCS3D01G011900 chr7D 98.225 169 3 0 2483 2651 192936185 192936017 3.720000e-76 296.0
44 TraesCS3D01G011900 chr7D 90.323 155 15 0 4350 4504 90554562 90554408 2.320000e-48 204.0
45 TraesCS3D01G011900 chr5A 97.159 176 4 1 2481 2655 651496989 651496814 3.720000e-76 296.0
46 TraesCS3D01G011900 chr6D 96.610 177 4 2 2484 2658 392896975 392897151 4.810000e-75 292.0
47 TraesCS3D01G011900 chr6D 85.625 160 20 3 4349 4505 6756785 6756626 1.090000e-36 165.0
48 TraesCS3D01G011900 chr1D 97.633 169 4 0 2484 2652 238940380 238940212 1.730000e-74 291.0
49 TraesCS3D01G011900 chr5B 94.536 183 9 1 2477 2658 615694595 615694777 1.040000e-71 281.0
50 TraesCS3D01G011900 chr5B 85.890 163 20 3 4344 4504 544490568 544490407 2.350000e-38 171.0
51 TraesCS3D01G011900 chr5B 85.276 163 19 5 4346 4505 671710179 671710019 3.930000e-36 163.0
52 TraesCS3D01G011900 chr6B 92.386 197 11 4 2456 2649 696483583 696483388 1.350000e-70 278.0
53 TraesCS3D01G011900 chr7B 88.500 200 19 4 2453 2649 695330804 695330606 6.350000e-59 239.0
54 TraesCS3D01G011900 chr4D 87.578 161 17 3 4346 4504 386984670 386984829 3.020000e-42 183.0
55 TraesCS3D01G011900 chr1A 86.061 165 20 3 4342 4504 540323904 540324067 1.820000e-39 174.0
56 TraesCS3D01G011900 chr2B 86.250 160 21 1 4346 4504 230247449 230247608 6.530000e-39 172.0
57 TraesCS3D01G011900 chr5D 85.890 163 18 5 4346 4505 532274793 532274633 8.450000e-38 169.0
58 TraesCS3D01G011900 chr1B 77.444 133 28 2 376 507 9597473 9597342 1.470000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G011900 chr3D 4168634 4173543 4909 False 9068.000000 9068 100.000000 1 4910 1 chr3D.!!$F1 4909
1 TraesCS3D01G011900 chr3D 4072270 4076590 4320 True 1561.666667 2237 90.590000 1 4159 3 chr3D.!!$R1 4158
2 TraesCS3D01G011900 chr6A 609882566 609886616 4050 True 1243.250000 3299 93.351750 909 4857 4 chr6A.!!$R2 3948
3 TraesCS3D01G011900 chr3A 9610340 9613877 3537 True 2723.500000 3277 94.423000 1 4101 2 chr3A.!!$R1 4100
4 TraesCS3D01G011900 chr3A 9779397 9783299 3902 False 1336.750000 2165 94.561000 1 4129 4 chr3A.!!$F2 4128
5 TraesCS3D01G011900 chrUn 246335882 246340211 4329 True 900.283333 2169 91.852333 1 4619 6 chrUn.!!$R3 4618
6 TraesCS3D01G011900 chrUn 238778901 238779954 1053 True 776.000000 776 80.113000 2821 3873 1 chrUn.!!$R1 1052
7 TraesCS3D01G011900 chr3B 13947142 13948035 893 False 1116.000000 1116 89.556000 3248 4125 1 chr3B.!!$F1 877
8 TraesCS3D01G011900 chr3B 6389982 6394311 4329 True 900.283333 2169 91.852333 1 4619 6 chr3B.!!$R2 4618
9 TraesCS3D01G011900 chr3B 13961658 13962723 1065 True 789.000000 789 80.168000 2818 3883 1 chr3B.!!$R1 1065
10 TraesCS3D01G011900 chr3B 13939283 13941434 2151 False 445.400000 828 93.174600 411 3250 5 chr3B.!!$F4 2839
11 TraesCS3D01G011900 chr3B 6667177 6667916 739 False 380.766667 773 93.739667 1 842 3 chr3B.!!$F3 841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 668 0.107312 ACAGATGCAGGATCAGGCAC 60.107 55.000 12.07 7.28 43.75 5.01 F
1107 1180 0.251634 TCCATAACTGCGCACCATCA 59.748 50.000 5.66 0.00 0.00 3.07 F
1121 1197 0.674581 CCATCAAGGTGCAGCGAAGA 60.675 55.000 10.78 10.13 0.00 2.87 F
1122 1198 1.159285 CATCAAGGTGCAGCGAAGAA 58.841 50.000 10.78 0.00 0.00 2.52 F
2497 3356 1.418264 GCCTTCTACTCCCTCCATTCC 59.582 57.143 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1615 2059 2.236146 TGGCTCTGTCGGTGAATAACAT 59.764 45.455 0.00 0.0 0.00 2.71 R
2637 3496 4.196193 TGTGCAAAATAATACTCCCTCCG 58.804 43.478 0.00 0.0 0.00 4.63 R
2638 3497 6.524101 TTTGTGCAAAATAATACTCCCTCC 57.476 37.500 0.00 0.0 0.00 4.30 R
3268 4151 6.867816 AGCTCTCGACAAATATCTGATTCATC 59.132 38.462 0.00 0.0 0.00 2.92 R
4145 5060 1.546029 GTTCCAGGAGCACCAATTTCC 59.454 52.381 2.07 0.0 38.94 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 4.574013 GGCTCAACATTCTGAACCTGATAG 59.426 45.833 0.00 0.00 30.24 2.08
260 261 8.708378 ACAGGAACATGTAATCTGATCTCAATA 58.292 33.333 21.90 0.00 0.00 1.90
261 262 9.722184 CAGGAACATGTAATCTGATCTCAATAT 57.278 33.333 14.22 0.00 0.00 1.28
659 668 0.107312 ACAGATGCAGGATCAGGCAC 60.107 55.000 12.07 7.28 43.75 5.01
804 824 6.317789 TGATTGCTGGTTTTCTTAGTCAAG 57.682 37.500 0.00 0.00 0.00 3.02
997 1054 5.707298 TCCTCCTCATCTTCATTTTTCACAC 59.293 40.000 0.00 0.00 0.00 3.82
1107 1180 0.251634 TCCATAACTGCGCACCATCA 59.748 50.000 5.66 0.00 0.00 3.07
1121 1197 0.674581 CCATCAAGGTGCAGCGAAGA 60.675 55.000 10.78 10.13 0.00 2.87
1122 1198 1.159285 CATCAAGGTGCAGCGAAGAA 58.841 50.000 10.78 0.00 0.00 2.52
1125 1201 1.968540 AAGGTGCAGCGAAGAAGGC 60.969 57.895 10.78 0.00 0.00 4.35
1170 1614 3.451894 GCAACCAGCCCCCAATCG 61.452 66.667 0.00 0.00 37.23 3.34
1272 1716 2.744202 GGTCACTGCAATTGACTACAGG 59.256 50.000 21.54 2.02 42.63 4.00
1274 1718 4.562757 GGTCACTGCAATTGACTACAGGTA 60.563 45.833 21.54 0.00 42.63 3.08
1284 1728 2.023791 TGACTACAGGTATGGTGGCCTA 60.024 50.000 3.32 0.00 33.07 3.93
1391 1835 3.306780 CCTGACAGTTACGGAGGTGAAAT 60.307 47.826 0.93 0.00 0.00 2.17
1583 2027 5.344884 CACAGTGGTTTCAAACGGTATTTT 58.655 37.500 0.00 0.00 0.00 1.82
1584 2028 5.231147 CACAGTGGTTTCAAACGGTATTTTG 59.769 40.000 0.00 0.00 37.75 2.44
1586 2030 6.183360 ACAGTGGTTTCAAACGGTATTTTGAT 60.183 34.615 0.00 0.00 43.38 2.57
1593 2037 2.102554 CGGTATTTTGATGCCGGCA 58.897 52.632 34.80 34.80 44.35 5.69
1612 2056 6.763135 GCCGGCAGATTATGATATCAAATCTA 59.237 38.462 24.80 9.88 37.76 1.98
1689 2133 4.641396 TGACTTGGTCAGTTCCTAACATG 58.359 43.478 0.00 0.00 37.67 3.21
1787 2231 3.007635 AGCGCCAAGGTATTGTTTCTAC 58.992 45.455 2.29 0.00 34.39 2.59
1800 2247 9.162764 GGTATTGTTTCTACTTCTTAAGCATCA 57.837 33.333 0.00 0.00 0.00 3.07
1830 2278 3.691118 TGTTCTGAATACTTGCATGCCTC 59.309 43.478 16.68 2.86 0.00 4.70
1839 2288 7.922278 TGAATACTTGCATGCCTCAAATTATTC 59.078 33.333 16.68 19.13 33.89 1.75
1934 2391 4.682787 TGTCTCTGTTTACCAGCATATCG 58.317 43.478 0.00 0.00 41.25 2.92
1995 2452 4.718774 ACTCCCCCATACAGATAGCATATG 59.281 45.833 0.00 0.00 0.00 1.78
2130 2697 4.202440 CCATATCAAGAAGCTCAGGGATGT 60.202 45.833 0.00 0.00 0.00 3.06
2136 2703 4.640771 AGAAGCTCAGGGATGTAAAACA 57.359 40.909 0.00 0.00 0.00 2.83
2151 2718 9.531942 GGATGTAAAACATTCATGATTATGCAA 57.468 29.630 7.21 0.00 39.27 4.08
2165 2734 4.888326 TTATGCAAAAGCCAATGAGGTT 57.112 36.364 0.00 0.00 40.61 3.50
2166 2735 3.775261 ATGCAAAAGCCAATGAGGTTT 57.225 38.095 0.00 0.00 43.40 3.27
2488 3347 8.966069 AATAGAAATTGTAAGCCTTCTACTCC 57.034 34.615 0.00 0.00 34.20 3.85
2489 3348 5.746284 AGAAATTGTAAGCCTTCTACTCCC 58.254 41.667 0.00 0.00 0.00 4.30
2490 3349 5.489278 AGAAATTGTAAGCCTTCTACTCCCT 59.511 40.000 0.00 0.00 0.00 4.20
2491 3350 5.360649 AATTGTAAGCCTTCTACTCCCTC 57.639 43.478 0.00 0.00 0.00 4.30
2492 3351 2.748388 TGTAAGCCTTCTACTCCCTCC 58.252 52.381 0.00 0.00 0.00 4.30
2493 3352 2.043939 TGTAAGCCTTCTACTCCCTCCA 59.956 50.000 0.00 0.00 0.00 3.86
2494 3353 2.577772 AAGCCTTCTACTCCCTCCAT 57.422 50.000 0.00 0.00 0.00 3.41
2495 3354 2.577772 AGCCTTCTACTCCCTCCATT 57.422 50.000 0.00 0.00 0.00 3.16
2496 3355 2.403561 AGCCTTCTACTCCCTCCATTC 58.596 52.381 0.00 0.00 0.00 2.67
2497 3356 1.418264 GCCTTCTACTCCCTCCATTCC 59.582 57.143 0.00 0.00 0.00 3.01
2498 3357 2.961977 GCCTTCTACTCCCTCCATTCCT 60.962 54.545 0.00 0.00 0.00 3.36
2499 3358 3.694537 GCCTTCTACTCCCTCCATTCCTA 60.695 52.174 0.00 0.00 0.00 2.94
2500 3359 4.557705 CCTTCTACTCCCTCCATTCCTAA 58.442 47.826 0.00 0.00 0.00 2.69
2501 3360 4.969359 CCTTCTACTCCCTCCATTCCTAAA 59.031 45.833 0.00 0.00 0.00 1.85
2502 3361 5.608860 CCTTCTACTCCCTCCATTCCTAAAT 59.391 44.000 0.00 0.00 0.00 1.40
2503 3362 6.787957 CCTTCTACTCCCTCCATTCCTAAATA 59.212 42.308 0.00 0.00 0.00 1.40
2504 3363 7.459444 CCTTCTACTCCCTCCATTCCTAAATAT 59.541 40.741 0.00 0.00 0.00 1.28
2505 3364 8.814448 TTCTACTCCCTCCATTCCTAAATATT 57.186 34.615 0.00 0.00 0.00 1.28
2506 3365 8.814448 TCTACTCCCTCCATTCCTAAATATTT 57.186 34.615 5.89 5.89 0.00 1.40
2507 3366 8.660435 TCTACTCCCTCCATTCCTAAATATTTG 58.340 37.037 11.05 1.40 0.00 2.32
2508 3367 7.226059 ACTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
2509 3368 7.290813 ACTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
2510 3369 7.129504 ACTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
2511 3370 7.882755 TCCCTCCATTCCTAAATATTTGTCTT 58.117 34.615 11.05 0.00 0.00 3.01
2512 3371 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
2513 3372 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
2514 3373 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
2532 3391 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
2541 3400 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
2542 3401 9.297586 GATATTTCAACAAGTGACTACATACGA 57.702 33.333 0.00 0.00 35.39 3.43
2543 3402 7.956420 ATTTCAACAAGTGACTACATACGAA 57.044 32.000 0.00 0.00 35.39 3.85
2544 3403 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2545 3404 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
2546 3405 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
2547 3406 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
2548 3407 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
2549 3408 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
2550 3409 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
2551 3410 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
2552 3411 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
2553 3412 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2554 3413 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
2555 3414 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2556 3415 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2557 3416 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2558 3417 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2559 3418 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
2560 3419 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2561 3420 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
2562 3421 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2563 3422 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2564 3423 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2597 3456 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2599 3458 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2600 3459 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2601 3460 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2602 3461 8.546322 TCTATATACATCCGTATGTGGTAGTCT 58.454 37.037 3.56 0.00 45.99 3.24
2603 3462 9.828039 CTATATACATCCGTATGTGGTAGTCTA 57.172 37.037 3.56 0.00 45.99 2.59
2605 3464 9.696572 ATATACATCCGTATGTGGTAGTCTATT 57.303 33.333 3.56 0.00 45.99 1.73
2606 3465 6.726490 ACATCCGTATGTGGTAGTCTATTT 57.274 37.500 0.00 0.00 44.79 1.40
2607 3466 6.513180 ACATCCGTATGTGGTAGTCTATTTG 58.487 40.000 0.00 0.00 44.79 2.32
2608 3467 6.322969 ACATCCGTATGTGGTAGTCTATTTGA 59.677 38.462 0.00 0.00 44.79 2.69
2609 3468 6.778834 TCCGTATGTGGTAGTCTATTTGAA 57.221 37.500 0.00 0.00 0.00 2.69
2610 3469 7.172868 TCCGTATGTGGTAGTCTATTTGAAA 57.827 36.000 0.00 0.00 0.00 2.69
2611 3470 7.788026 TCCGTATGTGGTAGTCTATTTGAAAT 58.212 34.615 0.00 0.00 0.00 2.17
2612 3471 7.924412 TCCGTATGTGGTAGTCTATTTGAAATC 59.076 37.037 0.00 0.00 0.00 2.17
2613 3472 7.926555 CCGTATGTGGTAGTCTATTTGAAATCT 59.073 37.037 0.00 0.00 0.00 2.40
2614 3473 8.969267 CGTATGTGGTAGTCTATTTGAAATCTC 58.031 37.037 0.00 0.00 0.00 2.75
2642 3501 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3345 4228 0.813184 CAGGCATTGCACGAGGAATT 59.187 50.000 11.39 0.00 33.08 2.17
4083 4998 2.744202 GACATCGGAACTGTCTGCAATT 59.256 45.455 4.82 0.00 39.90 2.32
4145 5060 0.304705 GGTGGCATTTGAGCGTATCG 59.695 55.000 0.00 0.00 34.64 2.92
4210 5125 4.332819 AGCCTATGACGCATTTGACTTAAC 59.667 41.667 0.00 0.00 0.00 2.01
4240 5155 3.058914 GCTACTGGTGTTTTGCTACTGTG 60.059 47.826 0.00 0.00 0.00 3.66
4246 5161 4.069304 GGTGTTTTGCTACTGTGGACATA 58.931 43.478 0.00 0.00 0.00 2.29
4262 5182 6.158871 TGTGGACATATTTGTATTACCAGGGA 59.841 38.462 0.00 0.00 35.79 4.20
4302 5222 1.068748 CACAACAGACTGCAGATTGGC 60.069 52.381 23.35 4.00 0.00 4.52
4312 5232 2.703416 TGCAGATTGGCAGAGTACAAG 58.297 47.619 0.00 0.00 39.25 3.16
4344 5264 1.796459 GTAGTTGCCACTTACCGTGTG 59.204 52.381 0.00 0.00 42.20 3.82
4433 5353 5.583495 AGACGAATCTCACTCTAAAATCCG 58.417 41.667 0.00 0.00 0.00 4.18
4642 5582 2.171237 TGAGAATCCAGTGGGCATACAG 59.829 50.000 9.92 0.00 0.00 2.74
4658 5598 4.452114 GCATACAGATGTGAACTGTGACAA 59.548 41.667 10.24 0.00 46.15 3.18
4668 5609 6.061441 TGTGAACTGTGACAATAAGGAATGT 58.939 36.000 0.00 0.00 0.00 2.71
4703 5644 3.254411 GGGAAAGAAGAAGCTTCACCTTG 59.746 47.826 27.57 0.00 0.00 3.61
4705 5646 1.902938 AGAAGAAGCTTCACCTTGCC 58.097 50.000 27.57 8.53 0.00 4.52
4709 5650 3.133365 AAGCTTCACCTTGCCCGGT 62.133 57.895 0.00 0.00 37.93 5.28
4825 5766 3.493303 GGGTGGGAGGGAGGCATC 61.493 72.222 0.00 0.00 0.00 3.91
4832 5773 1.152525 GAGGGAGGCATCGGGAGTA 60.153 63.158 0.00 0.00 0.00 2.59
4852 5793 1.227002 GGAGACGGTCAAGATCGCC 60.227 63.158 11.27 0.00 38.78 5.54
4896 5837 4.133373 CGGAGGTAGGGGACGGGA 62.133 72.222 0.00 0.00 0.00 5.14
4897 5838 2.613421 GGAGGTAGGGGACGGGAT 59.387 66.667 0.00 0.00 0.00 3.85
4898 5839 1.856323 GGAGGTAGGGGACGGGATA 59.144 63.158 0.00 0.00 0.00 2.59
4899 5840 0.189327 GGAGGTAGGGGACGGGATAA 59.811 60.000 0.00 0.00 0.00 1.75
4900 5841 1.630223 GAGGTAGGGGACGGGATAAG 58.370 60.000 0.00 0.00 0.00 1.73
4901 5842 0.190318 AGGTAGGGGACGGGATAAGG 59.810 60.000 0.00 0.00 0.00 2.69
4902 5843 0.105298 GGTAGGGGACGGGATAAGGT 60.105 60.000 0.00 0.00 0.00 3.50
4903 5844 1.693726 GGTAGGGGACGGGATAAGGTT 60.694 57.143 0.00 0.00 0.00 3.50
4904 5845 1.690893 GTAGGGGACGGGATAAGGTTC 59.309 57.143 0.00 0.00 0.00 3.62
4905 5846 0.043637 AGGGGACGGGATAAGGTTCA 59.956 55.000 0.00 0.00 0.00 3.18
4906 5847 0.179702 GGGGACGGGATAAGGTTCAC 59.820 60.000 0.00 0.00 0.00 3.18
4907 5848 1.201424 GGGACGGGATAAGGTTCACT 58.799 55.000 0.00 0.00 0.00 3.41
4908 5849 1.558294 GGGACGGGATAAGGTTCACTT 59.442 52.381 0.00 0.00 43.28 3.16
4909 5850 2.026542 GGGACGGGATAAGGTTCACTTT 60.027 50.000 0.00 0.00 40.64 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 3.081061 TGTGTTGAGTACCATGCAATCC 58.919 45.455 0.00 0.00 0.00 3.01
659 668 6.761099 TCTTAACTCTAGTACCAGCTTCTG 57.239 41.667 0.00 0.00 0.00 3.02
804 824 3.892588 AGCCTATCTTCCTGTACACTAGC 59.107 47.826 0.00 0.00 0.00 3.42
997 1054 5.799681 ACAACCAAAGCTTCAAACATTTG 57.200 34.783 0.00 0.00 39.48 2.32
1107 1180 1.968540 GCCTTCTTCGCTGCACCTT 60.969 57.895 0.00 0.00 0.00 3.50
1121 1197 2.420687 GGAAATCGGATCTCTGTGCCTT 60.421 50.000 0.00 0.00 0.00 4.35
1122 1198 1.139853 GGAAATCGGATCTCTGTGCCT 59.860 52.381 0.00 0.00 0.00 4.75
1125 1201 2.586258 ACGGAAATCGGATCTCTGTG 57.414 50.000 5.01 0.00 44.45 3.66
1272 1716 3.821033 GGATGACATTTAGGCCACCATAC 59.179 47.826 5.01 0.00 0.00 2.39
1274 1718 2.424812 GGGATGACATTTAGGCCACCAT 60.425 50.000 5.01 0.00 0.00 3.55
1284 1728 3.071874 TCTTCAAGCGGGATGACATTT 57.928 42.857 0.00 0.00 0.00 2.32
1391 1835 0.464735 ACAGCGTACCAGGTTTGCAA 60.465 50.000 15.92 0.00 0.00 4.08
1583 2027 2.865119 ATCATAATCTGCCGGCATCA 57.135 45.000 32.87 20.65 0.00 3.07
1584 2028 4.445453 TGATATCATAATCTGCCGGCATC 58.555 43.478 32.87 20.49 0.00 3.91
1586 2030 3.979101 TGATATCATAATCTGCCGGCA 57.021 42.857 30.59 30.59 0.00 5.69
1612 2056 4.441634 GGCTCTGTCGGTGAATAACATAGT 60.442 45.833 0.00 0.00 0.00 2.12
1615 2059 2.236146 TGGCTCTGTCGGTGAATAACAT 59.764 45.455 0.00 0.00 0.00 2.71
1787 2231 8.302438 AGAACAAATCCTTTGATGCTTAAGAAG 58.698 33.333 6.67 0.17 43.26 2.85
1800 2247 7.288810 TGCAAGTATTCAGAACAAATCCTTT 57.711 32.000 0.00 0.00 0.00 3.11
1819 2266 6.255020 GTCAAGAATAATTTGAGGCATGCAAG 59.745 38.462 21.36 0.00 35.39 4.01
1839 2288 7.331026 TGGATCATTTAGGTACTCTTGTCAAG 58.669 38.462 6.21 6.21 41.75 3.02
1904 2359 5.794687 TGGTAAACAGAGACATATTTGCG 57.205 39.130 0.00 0.00 0.00 4.85
1934 2391 7.064728 GTGAGTGTGAAATATTTACTGGACTCC 59.935 40.741 6.80 0.00 0.00 3.85
1995 2452 7.099120 ACAAAATGGGATACTTTTCATCTTGC 58.901 34.615 0.00 0.00 0.00 4.01
2065 2523 9.626045 CAGAAATTTTGGAGGTAAACATAGTTC 57.374 33.333 0.00 0.00 0.00 3.01
2077 2535 5.593679 AGCATGATCAGAAATTTTGGAGG 57.406 39.130 0.09 0.00 0.00 4.30
2151 2718 6.610075 ACATGAATAAACCTCATTGGCTTT 57.390 33.333 0.00 0.00 40.22 3.51
2350 3156 8.228035 ACAGTAGCTAATTTGTGGTAAAACAA 57.772 30.769 0.00 0.00 38.26 2.83
2485 3344 7.521669 AGACAAATATTTAGGAATGGAGGGAG 58.478 38.462 0.00 0.00 0.00 4.30
2487 3346 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
2488 3347 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
2506 3365 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
2515 3374 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
2516 3375 9.297586 TCGTATGTAGTCACTTGTTGAAATATC 57.702 33.333 0.00 0.00 35.39 1.63
2517 3376 9.647797 TTCGTATGTAGTCACTTGTTGAAATAT 57.352 29.630 0.00 0.00 35.39 1.28
2518 3377 9.135843 CTTCGTATGTAGTCACTTGTTGAAATA 57.864 33.333 0.00 0.00 35.39 1.40
2519 3378 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
2520 3379 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
2521 3380 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
2522 3381 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
2523 3382 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
2524 3383 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
2525 3384 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
2526 3385 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
2527 3386 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
2528 3387 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
2529 3388 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
2530 3389 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2531 3390 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
2532 3391 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2533 3392 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2534 3393 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
2535 3394 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2536 3395 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
2537 3396 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
2538 3397 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
2539 3398 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
2540 3399 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
2541 3400 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
2571 3430 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2573 3432 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2574 3433 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2575 3434 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2576 3435 8.546322 AGACTACCACATACGGATGTATATAGA 58.454 37.037 22.62 5.04 44.82 1.98
2577 3436 8.734218 AGACTACCACATACGGATGTATATAG 57.266 38.462 14.23 16.35 44.82 1.31
2579 3438 9.696572 AATAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
2580 3439 9.524496 AAATAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
2581 3440 8.304596 CAAATAGACTACCACATACGGATGTAT 58.695 37.037 14.23 7.46 44.82 2.29
2582 3441 7.503230 TCAAATAGACTACCACATACGGATGTA 59.497 37.037 14.23 0.00 44.82 2.29
2584 3443 6.745116 TCAAATAGACTACCACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
2585 3444 6.971726 TCAAATAGACTACCACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
2586 3445 6.778834 TTCAAATAGACTACCACATACGGA 57.221 37.500 0.00 0.00 0.00 4.69
2587 3446 7.926555 AGATTTCAAATAGACTACCACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
2588 3447 8.873215 AGATTTCAAATAGACTACCACATACG 57.127 34.615 0.00 0.00 0.00 3.06
2616 3475 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2617 3476 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2618 3477 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2619 3478 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2620 3479 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2621 3480 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2622 3481 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2623 3482 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2624 3483 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2625 3484 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2626 3485 8.912614 ATAATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2627 3486 8.731591 AATAATACTCCCTCCGTTCCTAAATA 57.268 34.615 0.00 0.00 0.00 1.40
2628 3487 7.628501 AATAATACTCCCTCCGTTCCTAAAT 57.371 36.000 0.00 0.00 0.00 1.40
2629 3488 7.441903 AAATAATACTCCCTCCGTTCCTAAA 57.558 36.000 0.00 0.00 0.00 1.85
2630 3489 7.277396 CAAAATAATACTCCCTCCGTTCCTAA 58.723 38.462 0.00 0.00 0.00 2.69
2631 3490 6.687139 GCAAAATAATACTCCCTCCGTTCCTA 60.687 42.308 0.00 0.00 0.00 2.94
2632 3491 5.681639 CAAAATAATACTCCCTCCGTTCCT 58.318 41.667 0.00 0.00 0.00 3.36
2633 3492 4.275196 GCAAAATAATACTCCCTCCGTTCC 59.725 45.833 0.00 0.00 0.00 3.62
2634 3493 4.879545 TGCAAAATAATACTCCCTCCGTTC 59.120 41.667 0.00 0.00 0.00 3.95
2635 3494 4.638865 GTGCAAAATAATACTCCCTCCGTT 59.361 41.667 0.00 0.00 0.00 4.44
2636 3495 4.196971 GTGCAAAATAATACTCCCTCCGT 58.803 43.478 0.00 0.00 0.00 4.69
2637 3496 4.196193 TGTGCAAAATAATACTCCCTCCG 58.804 43.478 0.00 0.00 0.00 4.63
2638 3497 6.524101 TTTGTGCAAAATAATACTCCCTCC 57.476 37.500 0.00 0.00 0.00 4.30
3268 4151 6.867816 AGCTCTCGACAAATATCTGATTCATC 59.132 38.462 0.00 0.00 0.00 2.92
3345 4228 2.945440 GCACCCTTGATGCAGGTATTCA 60.945 50.000 0.00 0.00 42.88 2.57
4145 5060 1.546029 GTTCCAGGAGCACCAATTTCC 59.454 52.381 2.07 0.00 38.94 3.13
4190 5105 6.757010 AGGTAGTTAAGTCAAATGCGTCATAG 59.243 38.462 0.00 0.00 0.00 2.23
4210 5125 4.556699 GCAAAACACCAGTAGCAAAGGTAG 60.557 45.833 0.00 0.00 33.49 3.18
4240 5155 6.715264 CCTTCCCTGGTAATACAAATATGTCC 59.285 42.308 0.00 0.00 41.05 4.02
4246 5161 6.391649 TCATACCCTTCCCTGGTAATACAAAT 59.608 38.462 0.00 0.00 41.49 2.32
4262 5182 4.474651 TGTGGAATCTGATGTCATACCCTT 59.525 41.667 0.00 0.00 0.00 3.95
4302 5222 9.490379 ACTACTTTTTCCATTACTTGTACTCTG 57.510 33.333 0.00 0.00 0.00 3.35
4312 5232 6.327279 AGTGGCAACTACTTTTTCCATTAC 57.673 37.500 0.00 0.00 33.79 1.89
4344 5264 5.422650 AGATATATTTAGGAACGGAGGGAGC 59.577 44.000 0.00 0.00 0.00 4.70
4433 5353 7.462731 CGGACTAGATACGGATGTTTATAGAC 58.537 42.308 0.00 0.00 29.16 2.59
4490 5410 5.163301 ACGATTACTACTACTCCCTCCGTTA 60.163 44.000 0.00 0.00 0.00 3.18
4493 5413 3.497640 CACGATTACTACTACTCCCTCCG 59.502 52.174 0.00 0.00 0.00 4.63
4624 5544 3.144506 CATCTGTATGCCCACTGGATTC 58.855 50.000 0.00 0.00 0.00 2.52
4642 5582 6.801539 TTCCTTATTGTCACAGTTCACATC 57.198 37.500 0.00 0.00 0.00 3.06
4658 5598 6.353082 CCCTTCCTCTTGTGTACATTCCTTAT 60.353 42.308 0.00 0.00 0.00 1.73
4668 5609 4.905456 TCTTCTTTCCCTTCCTCTTGTGTA 59.095 41.667 0.00 0.00 0.00 2.90
4770 5711 1.444895 CATTGTGCTTTCCCGCAGC 60.445 57.895 0.00 0.00 41.21 5.25
4771 5712 1.444895 GCATTGTGCTTTCCCGCAG 60.445 57.895 0.00 0.00 41.21 5.18
4772 5713 2.650196 GCATTGTGCTTTCCCGCA 59.350 55.556 0.00 0.00 40.96 5.69
4817 5758 2.210711 CCCTACTCCCGATGCCTCC 61.211 68.421 0.00 0.00 0.00 4.30
4819 5760 1.152440 CTCCCTACTCCCGATGCCT 60.152 63.158 0.00 0.00 0.00 4.75
4825 5766 1.823041 GACCGTCTCCCTACTCCCG 60.823 68.421 0.00 0.00 0.00 5.14
4832 5773 1.668101 GCGATCTTGACCGTCTCCCT 61.668 60.000 0.00 0.00 0.00 4.20
4879 5820 2.072874 TATCCCGTCCCCTACCTCCG 62.073 65.000 0.00 0.00 0.00 4.63
4880 5821 0.189327 TTATCCCGTCCCCTACCTCC 59.811 60.000 0.00 0.00 0.00 4.30
4881 5822 1.630223 CTTATCCCGTCCCCTACCTC 58.370 60.000 0.00 0.00 0.00 3.85
4882 5823 0.190318 CCTTATCCCGTCCCCTACCT 59.810 60.000 0.00 0.00 0.00 3.08
4883 5824 0.105298 ACCTTATCCCGTCCCCTACC 60.105 60.000 0.00 0.00 0.00 3.18
4884 5825 1.690893 GAACCTTATCCCGTCCCCTAC 59.309 57.143 0.00 0.00 0.00 3.18
4885 5826 1.291637 TGAACCTTATCCCGTCCCCTA 59.708 52.381 0.00 0.00 0.00 3.53
4886 5827 0.043637 TGAACCTTATCCCGTCCCCT 59.956 55.000 0.00 0.00 0.00 4.79
4887 5828 0.179702 GTGAACCTTATCCCGTCCCC 59.820 60.000 0.00 0.00 0.00 4.81
4888 5829 1.201424 AGTGAACCTTATCCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
4889 5830 3.345508 AAAGTGAACCTTATCCCGTCC 57.654 47.619 0.00 0.00 31.48 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.