Multiple sequence alignment - TraesCS3D01G011100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G011100 chr3D 100.000 2828 0 0 1 2828 4044975 4047802 0.000000e+00 5223
1 TraesCS3D01G011100 chr3D 96.220 1111 42 0 1260 2370 4012392 4013502 0.000000e+00 1820
2 TraesCS3D01G011100 chr3D 86.923 1040 103 19 1082 2117 4059043 4060053 0.000000e+00 1136
3 TraesCS3D01G011100 chr3D 83.448 580 96 0 1261 1840 4011142 4010563 8.910000e-150 540
4 TraesCS3D01G011100 chr3D 93.333 255 17 0 1 255 4011117 4011371 7.400000e-101 377
5 TraesCS3D01G011100 chr3A 84.625 1613 166 42 587 2165 9572901 9571337 0.000000e+00 1530
6 TraesCS3D01G011100 chr3A 89.286 700 50 11 47 722 9556206 9555508 0.000000e+00 854
7 TraesCS3D01G011100 chr3A 91.667 408 28 4 1657 2060 9569011 9568606 6.840000e-156 560
8 TraesCS3D01G011100 chr3A 88.337 463 43 9 2370 2828 637631723 637632178 1.920000e-151 545
9 TraesCS3D01G011100 chr3A 82.931 580 99 0 1261 1840 9573497 9574076 8.980000e-145 523
10 TraesCS3D01G011100 chr3A 81.607 473 65 18 2369 2828 317163749 317164212 3.440000e-99 372
11 TraesCS3D01G011100 chr3A 85.000 320 37 6 2052 2370 9563354 9563045 5.880000e-82 315
12 TraesCS3D01G011100 chr3A 79.707 409 36 18 6 403 9573517 9573145 4.680000e-63 252
13 TraesCS3D01G011100 chr3A 90.306 196 12 3 732 921 9555040 9554846 1.680000e-62 250
14 TraesCS3D01G011100 chr1A 90.672 461 39 4 2370 2828 7906582 7906124 6.700000e-171 610
15 TraesCS3D01G011100 chr7D 85.587 562 79 2 1261 1821 577201241 577201801 3.140000e-164 588
16 TraesCS3D01G011100 chr7B 84.737 570 85 2 1261 1829 639926306 639926874 1.140000e-158 569
17 TraesCS3D01G011100 chr7B 84.737 570 85 2 1261 1829 639945952 639946520 1.140000e-158 569
18 TraesCS3D01G011100 chr7B 84.917 484 42 22 2370 2828 584290794 584291271 7.140000e-126 460
19 TraesCS3D01G011100 chr7B 97.156 211 6 0 2370 2580 556890810 556890600 9.630000e-95 357
20 TraesCS3D01G011100 chr7A 84.314 561 88 0 1261 1821 669293446 669294006 1.480000e-152 549
21 TraesCS3D01G011100 chr1B 87.339 466 42 14 2371 2828 581161763 581161307 4.180000e-143 518
22 TraesCS3D01G011100 chr6A 86.825 463 50 10 2371 2828 547654853 547655309 9.040000e-140 507
23 TraesCS3D01G011100 chr6A 82.692 468 58 17 2370 2828 22463265 22462812 7.340000e-106 394
24 TraesCS3D01G011100 chr2A 84.764 466 56 13 2370 2828 719369499 719369956 1.190000e-123 453
25 TraesCS3D01G011100 chr2A 83.755 474 57 15 2368 2828 79925328 79925794 5.600000e-117 431
26 TraesCS3D01G011100 chr4B 79.447 579 99 6 1263 1828 660429065 660428494 2.640000e-105 392
27 TraesCS3D01G011100 chr4B 79.275 579 100 6 1263 1828 660440875 660440304 1.230000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G011100 chr3D 4044975 4047802 2827 False 5223.000000 5223 100.0000 1 2828 1 chr3D.!!$F1 2827
1 TraesCS3D01G011100 chr3D 4059043 4060053 1010 False 1136.000000 1136 86.9230 1082 2117 1 chr3D.!!$F2 1035
2 TraesCS3D01G011100 chr3D 4011117 4013502 2385 False 1098.500000 1820 94.7765 1 2370 2 chr3D.!!$F3 2369
3 TraesCS3D01G011100 chr3D 4010563 4011142 579 True 540.000000 540 83.4480 1261 1840 1 chr3D.!!$R1 579
4 TraesCS3D01G011100 chr3A 9568606 9573517 4911 True 780.666667 1530 85.3330 6 2165 3 chr3A.!!$R3 2159
5 TraesCS3D01G011100 chr3A 9554846 9556206 1360 True 552.000000 854 89.7960 47 921 2 chr3A.!!$R2 874
6 TraesCS3D01G011100 chr3A 9573497 9574076 579 False 523.000000 523 82.9310 1261 1840 1 chr3A.!!$F1 579
7 TraesCS3D01G011100 chr7D 577201241 577201801 560 False 588.000000 588 85.5870 1261 1821 1 chr7D.!!$F1 560
8 TraesCS3D01G011100 chr7B 639926306 639926874 568 False 569.000000 569 84.7370 1261 1829 1 chr7B.!!$F2 568
9 TraesCS3D01G011100 chr7B 639945952 639946520 568 False 569.000000 569 84.7370 1261 1829 1 chr7B.!!$F3 568
10 TraesCS3D01G011100 chr7A 669293446 669294006 560 False 549.000000 549 84.3140 1261 1821 1 chr7A.!!$F1 560
11 TraesCS3D01G011100 chr4B 660428494 660429065 571 True 392.000000 392 79.4470 1263 1828 1 chr4B.!!$R1 565
12 TraesCS3D01G011100 chr4B 660440304 660440875 571 True 387.000000 387 79.2750 1263 1828 1 chr4B.!!$R2 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1099 0.248458 CCACACAACACAACGAAGCC 60.248 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2767 5388 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.0 12.58 0.0 42.62 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 134 9.020813 CAAATATGCAGTGATGAAAGAATGAAG 57.979 33.333 0.00 0.00 0.00 3.02
138 141 7.522073 GCAGTGATGAAAGAATGAAGTTGGTAA 60.522 37.037 0.00 0.00 0.00 2.85
255 258 1.864669 AGAGAAGGAAGCTGGAGGAG 58.135 55.000 0.00 0.00 0.00 3.69
257 260 1.223211 GAAGGAAGCTGGAGGAGGC 59.777 63.158 0.00 0.00 0.00 4.70
307 320 4.673441 TGTCTAAGCGTCAATCTCTTAGC 58.327 43.478 0.00 0.00 39.75 3.09
425 477 1.806542 ACAGTTGACGATTGACATGGC 59.193 47.619 0.00 0.00 0.00 4.40
454 507 1.930908 GCAGAGCAGCCCATGTGTTC 61.931 60.000 0.00 0.00 0.00 3.18
484 542 8.831000 ATTAATATTTCTGAAAACGCGGTTAC 57.169 30.769 11.16 0.00 0.00 2.50
485 543 6.490566 AATATTTCTGAAAACGCGGTTACT 57.509 33.333 11.16 0.00 0.00 2.24
530 604 3.492313 GCTAATGCAAGCTTGTGTGTAC 58.508 45.455 26.55 10.14 39.50 2.90
573 654 3.056328 GGCAACAAGGAGGCGACC 61.056 66.667 0.00 0.00 0.00 4.79
615 720 5.519927 GCCATAAATTCAACGGGAAGAAATG 59.480 40.000 0.00 0.00 39.30 2.32
634 743 7.448420 AGAAATGCTCATCAATTAGCTAGCTA 58.552 34.615 20.67 20.67 39.53 3.32
695 809 4.635223 AGACGTGTAATCCATCCATCATG 58.365 43.478 0.00 0.00 0.00 3.07
705 819 7.713734 AATCCATCCATCATGATTTATCACC 57.286 36.000 5.16 0.00 40.03 4.02
715 829 6.115446 TCATGATTTATCACCTCAGACCAAC 58.885 40.000 0.00 0.00 40.03 3.77
716 830 5.497464 TGATTTATCACCTCAGACCAACA 57.503 39.130 0.00 0.00 0.00 3.33
717 831 6.065976 TGATTTATCACCTCAGACCAACAT 57.934 37.500 0.00 0.00 0.00 2.71
718 832 6.484288 TGATTTATCACCTCAGACCAACATT 58.516 36.000 0.00 0.00 0.00 2.71
719 833 6.947733 TGATTTATCACCTCAGACCAACATTT 59.052 34.615 0.00 0.00 0.00 2.32
720 834 7.451255 TGATTTATCACCTCAGACCAACATTTT 59.549 33.333 0.00 0.00 0.00 1.82
721 835 7.595819 TTTATCACCTCAGACCAACATTTTT 57.404 32.000 0.00 0.00 0.00 1.94
754 868 6.812160 CACGTCAGGTTAGTTTTCTTAGCTAT 59.188 38.462 0.00 0.00 35.54 2.97
755 869 7.972277 CACGTCAGGTTAGTTTTCTTAGCTATA 59.028 37.037 0.00 0.00 35.54 1.31
756 870 8.189460 ACGTCAGGTTAGTTTTCTTAGCTATAG 58.811 37.037 0.00 0.00 35.54 1.31
757 871 8.189460 CGTCAGGTTAGTTTTCTTAGCTATAGT 58.811 37.037 0.84 0.00 35.54 2.12
771 887 9.597170 TCTTAGCTATAGTATACACCATACGAG 57.403 37.037 5.50 0.00 43.75 4.18
781 897 6.183360 GTATACACCATACGAGGAAACTTCCT 60.183 42.308 10.86 10.86 43.81 3.36
782 898 7.013655 GTATACACCATACGAGGAAACTTCCTA 59.986 40.741 11.03 0.00 42.55 2.94
801 917 8.526147 ACTTCCTAAAAGTTGATTGATTCATGG 58.474 33.333 0.00 0.00 33.34 3.66
805 921 8.415553 CCTAAAAGTTGATTGATTCATGGCATA 58.584 33.333 0.00 0.00 33.34 3.14
806 922 9.241317 CTAAAAGTTGATTGATTCATGGCATAC 57.759 33.333 0.00 0.00 33.34 2.39
807 923 6.778834 AAGTTGATTGATTCATGGCATACA 57.221 33.333 0.00 0.00 33.34 2.29
810 926 7.788026 AGTTGATTGATTCATGGCATACATTT 58.212 30.769 0.00 0.00 37.84 2.32
811 927 8.916062 AGTTGATTGATTCATGGCATACATTTA 58.084 29.630 0.00 0.00 37.84 1.40
812 928 9.188588 GTTGATTGATTCATGGCATACATTTAG 57.811 33.333 0.00 0.00 37.84 1.85
813 929 8.467963 TGATTGATTCATGGCATACATTTAGT 57.532 30.769 0.00 0.00 37.84 2.24
815 931 6.882610 TGATTCATGGCATACATTTAGTCC 57.117 37.500 0.00 0.00 37.84 3.85
817 933 3.138304 TCATGGCATACATTTAGTCCGC 58.862 45.455 0.00 0.00 37.84 5.54
818 934 1.577468 TGGCATACATTTAGTCCGCG 58.423 50.000 0.00 0.00 0.00 6.46
819 935 1.134640 TGGCATACATTTAGTCCGCGT 60.135 47.619 4.92 0.00 0.00 6.01
820 936 1.260561 GGCATACATTTAGTCCGCGTG 59.739 52.381 4.92 0.00 0.00 5.34
822 938 2.285602 GCATACATTTAGTCCGCGTGTG 60.286 50.000 4.92 0.00 0.00 3.82
823 939 1.352114 TACATTTAGTCCGCGTGTGC 58.648 50.000 4.92 0.00 37.91 4.57
824 940 1.296056 ACATTTAGTCCGCGTGTGCC 61.296 55.000 4.92 0.00 38.08 5.01
825 941 2.098233 ATTTAGTCCGCGTGTGCCG 61.098 57.895 4.92 0.00 38.08 5.69
833 962 0.931702 CCGCGTGTGCCGATTAAATA 59.068 50.000 4.92 0.00 39.56 1.40
835 964 2.359598 CGCGTGTGCCGATTAAATAAC 58.640 47.619 0.00 0.00 39.56 1.89
859 988 1.562008 TGACCATTTCTATCGGGCCAA 59.438 47.619 4.39 0.00 0.00 4.52
864 993 3.411446 CATTTCTATCGGGCCAAGCATA 58.589 45.455 4.39 0.00 0.00 3.14
869 998 3.774766 TCTATCGGGCCAAGCATACATAT 59.225 43.478 4.39 0.00 0.00 1.78
870 999 2.183478 TCGGGCCAAGCATACATATG 57.817 50.000 4.39 0.00 36.78 1.78
943 1079 7.530426 AATATATAGCCTTCCAAAAGCCAAG 57.470 36.000 0.00 0.00 0.00 3.61
963 1099 0.248458 CCACACAACACAACGAAGCC 60.248 55.000 0.00 0.00 0.00 4.35
965 1101 1.135546 CACACAACACAACGAAGCCAA 60.136 47.619 0.00 0.00 0.00 4.52
988 1124 6.951256 AAAAAGACAGTTGCTTTGAGAAAC 57.049 33.333 0.00 0.00 35.86 2.78
989 1125 3.951979 AGACAGTTGCTTTGAGAAACG 57.048 42.857 0.00 0.00 38.80 3.60
1024 1160 3.434310 GGCCTCCTCTTCCTATTTCCTTG 60.434 52.174 0.00 0.00 0.00 3.61
1027 1163 4.471386 CCTCCTCTTCCTATTTCCTTGTCA 59.529 45.833 0.00 0.00 0.00 3.58
1041 1177 0.036732 TTGTCATCGCCCTTCTTGCT 59.963 50.000 0.00 0.00 0.00 3.91
1080 1216 3.225235 GCTTCTGATCCGAGCCCT 58.775 61.111 0.00 0.00 0.00 5.19
1083 1219 0.673437 CTTCTGATCCGAGCCCTCTC 59.327 60.000 0.00 0.00 35.99 3.20
1365 1549 1.497991 CGAGAGACACAAAGGCGAAA 58.502 50.000 0.00 0.00 0.00 3.46
1862 2390 6.129194 GCATGGACAAACGTTGAAAATAGAAC 60.129 38.462 0.00 0.00 0.00 3.01
1871 2399 4.449743 CGTTGAAAATAGAACCGTCTTGGA 59.550 41.667 0.00 0.00 42.00 3.53
1948 2476 8.473358 TCCTCTATGGTTGAAATACTCGATTA 57.527 34.615 0.00 0.00 37.07 1.75
2046 2574 6.365970 ACCCATAATCAACTATAGCTCAGG 57.634 41.667 0.00 0.00 0.00 3.86
2058 2586 0.969894 AGCTCAGGTGTGGTGAGTAC 59.030 55.000 2.30 0.00 43.00 2.73
2259 3239 9.226606 CAAAAATGTTAGTAGTACAGAATGGGA 57.773 33.333 2.52 0.00 43.62 4.37
2347 3327 0.394938 TAAGAAGAAGCACCGCCACA 59.605 50.000 0.00 0.00 0.00 4.17
2378 3358 2.322772 TGGAACAACCTGTTGGGGA 58.677 52.632 14.05 0.00 41.28 4.81
2379 3359 0.631753 TGGAACAACCTGTTGGGGAA 59.368 50.000 14.05 0.00 41.28 3.97
2380 3360 1.037493 GGAACAACCTGTTGGGGAAC 58.963 55.000 14.05 1.65 41.28 3.62
2382 3362 0.033894 AACAACCTGTTGGGGAACGT 60.034 50.000 14.05 0.00 44.45 3.99
2383 3363 0.838608 ACAACCTGTTGGGGAACGTA 59.161 50.000 14.05 0.00 44.45 3.57
2384 3364 1.202722 ACAACCTGTTGGGGAACGTAG 60.203 52.381 14.05 0.00 44.45 3.51
2385 3365 1.134228 AACCTGTTGGGGAACGTAGT 58.866 50.000 0.00 0.00 41.48 2.73
2389 3369 3.328637 ACCTGTTGGGGAACGTAGTAATT 59.671 43.478 0.00 0.00 39.07 1.40
2391 3371 4.393990 CCTGTTGGGGAACGTAGTAATTTC 59.606 45.833 0.00 0.00 45.00 2.17
2392 3372 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2393 3373 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2394 3374 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2395 3375 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2396 3376 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2416 3396 2.525750 AAATCATACGCACACGCAAG 57.474 45.000 0.00 0.00 45.53 4.01
2417 3397 1.720805 AATCATACGCACACGCAAGA 58.279 45.000 0.00 0.00 45.53 3.02
2418 3398 1.939974 ATCATACGCACACGCAAGAT 58.060 45.000 0.00 0.00 45.53 2.40
2419 3399 1.277326 TCATACGCACACGCAAGATC 58.723 50.000 0.00 0.00 45.53 2.75
2422 3402 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
2423 3403 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
2424 3404 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
2425 3405 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
2426 3406 0.448990 CACACGCAAGATCATGGTGG 59.551 55.000 17.78 8.13 43.62 4.61
2428 3408 0.448990 CACGCAAGATCATGGTGGTG 59.551 55.000 0.00 0.00 43.62 4.17
2429 3409 1.308069 ACGCAAGATCATGGTGGTGC 61.308 55.000 0.00 1.10 43.62 5.01
2430 3410 1.307355 CGCAAGATCATGGTGGTGCA 61.307 55.000 10.29 0.00 43.02 4.57
2433 3413 2.292569 GCAAGATCATGGTGGTGCATAG 59.707 50.000 5.73 0.00 32.29 2.23
2434 3414 2.267174 AGATCATGGTGGTGCATAGC 57.733 50.000 0.00 0.00 0.00 2.97
2435 3415 1.491754 AGATCATGGTGGTGCATAGCA 59.508 47.619 8.02 8.02 35.60 3.49
2436 3416 2.092267 AGATCATGGTGGTGCATAGCAA 60.092 45.455 9.39 0.00 41.47 3.91
2443 3423 2.682893 GGTGCATAGCAACGAGAGG 58.317 57.895 0.00 0.00 41.47 3.69
2444 3424 0.811616 GGTGCATAGCAACGAGAGGG 60.812 60.000 0.00 0.00 41.47 4.30
2446 3426 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2447 3427 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2448 3428 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2449 3429 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2451 3431 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2452 3432 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2453 3433 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
2454 3434 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
2455 3435 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
2459 3439 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
2460 3440 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
2462 3442 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
2467 3447 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
2468 3448 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
2469 3449 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
2470 3450 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
2471 3451 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
2472 3452 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2473 3453 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2474 3454 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2475 3455 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2476 3456 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2477 3457 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2478 3458 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2479 3459 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2480 3460 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2498 3686 3.338603 CGGAAGCGTTAACACAACG 57.661 52.632 6.39 5.22 45.56 4.10
2509 3697 1.584175 AACACAACGCGGTTGATGTA 58.416 45.000 22.26 0.00 45.28 2.29
2514 3702 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2515 3703 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2517 3705 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
2518 3706 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
2520 3708 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
2521 3709 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
2523 3711 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
2536 3724 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
2538 3726 0.380733 CTTCACGATCCGACCGATCA 59.619 55.000 0.00 0.00 46.85 2.92
2539 3727 0.812549 TTCACGATCCGACCGATCAA 59.187 50.000 0.00 0.00 46.85 2.57
2540 3728 0.380733 TCACGATCCGACCGATCAAG 59.619 55.000 0.00 0.00 46.85 3.02
2541 3729 0.100682 CACGATCCGACCGATCAAGT 59.899 55.000 0.00 0.00 46.85 3.16
2542 3730 1.332686 CACGATCCGACCGATCAAGTA 59.667 52.381 0.00 0.00 46.85 2.24
2543 3731 1.332997 ACGATCCGACCGATCAAGTAC 59.667 52.381 0.00 0.00 46.85 2.73
2544 3732 1.334779 CGATCCGACCGATCAAGTACC 60.335 57.143 4.93 0.00 46.85 3.34
2547 3735 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
2548 3736 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
2550 3738 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
2552 3740 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
2553 3741 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
2561 3749 4.072088 CGAACGCACGGCACCTTC 62.072 66.667 0.00 0.00 0.00 3.46
2562 3750 4.072088 GAACGCACGGCACCTTCG 62.072 66.667 0.00 0.00 0.00 3.79
2563 3751 4.595538 AACGCACGGCACCTTCGA 62.596 61.111 0.00 0.00 0.00 3.71
2567 3755 2.668280 GCACGGCACCTTCGAGTTC 61.668 63.158 0.00 0.00 0.00 3.01
2568 3756 1.300620 CACGGCACCTTCGAGTTCA 60.301 57.895 0.00 0.00 0.00 3.18
2569 3757 1.006102 ACGGCACCTTCGAGTTCAG 60.006 57.895 0.00 0.00 0.00 3.02
2571 3759 1.301716 GGCACCTTCGAGTTCAGCA 60.302 57.895 0.00 0.00 0.00 4.41
2572 3760 1.569479 GGCACCTTCGAGTTCAGCAC 61.569 60.000 0.00 0.00 0.00 4.40
2573 3761 0.880278 GCACCTTCGAGTTCAGCACA 60.880 55.000 0.00 0.00 0.00 4.57
2574 3762 0.861837 CACCTTCGAGTTCAGCACAC 59.138 55.000 0.00 0.00 0.00 3.82
2575 3763 0.597637 ACCTTCGAGTTCAGCACACG 60.598 55.000 0.00 0.00 40.52 4.49
2576 3764 0.597637 CCTTCGAGTTCAGCACACGT 60.598 55.000 0.00 0.00 40.12 4.49
2581 3769 1.136529 CGAGTTCAGCACACGTTCATG 60.137 52.381 0.00 0.00 35.01 3.07
2582 3770 1.867233 GAGTTCAGCACACGTTCATGT 59.133 47.619 0.00 0.00 0.00 3.21
2583 3771 2.287915 GAGTTCAGCACACGTTCATGTT 59.712 45.455 0.00 0.00 0.00 2.71
2584 3772 2.032054 AGTTCAGCACACGTTCATGTTG 59.968 45.455 0.00 0.00 0.00 3.33
2587 3775 1.333308 CAGCACACGTTCATGTTGGAA 59.667 47.619 0.00 0.00 0.00 3.53
2589 3777 2.622942 AGCACACGTTCATGTTGGAAAT 59.377 40.909 0.00 0.00 0.00 2.17
2590 3778 3.818210 AGCACACGTTCATGTTGGAAATA 59.182 39.130 0.00 0.00 0.00 1.40
2591 3779 4.458989 AGCACACGTTCATGTTGGAAATAT 59.541 37.500 0.00 0.00 0.00 1.28
2592 3780 4.558470 GCACACGTTCATGTTGGAAATATG 59.442 41.667 0.00 0.00 45.50 1.78
2593 3781 4.558470 CACACGTTCATGTTGGAAATATGC 59.442 41.667 0.00 0.00 44.04 3.14
2594 3782 4.104776 CACGTTCATGTTGGAAATATGCC 58.895 43.478 0.00 0.00 44.04 4.40
2595 3783 3.130340 ACGTTCATGTTGGAAATATGCCC 59.870 43.478 0.00 0.00 44.04 5.36
2596 3784 3.381272 CGTTCATGTTGGAAATATGCCCT 59.619 43.478 0.00 0.00 44.04 5.19
2597 3785 4.578516 CGTTCATGTTGGAAATATGCCCTA 59.421 41.667 0.00 0.00 44.04 3.53
2598 3786 5.277974 CGTTCATGTTGGAAATATGCCCTAG 60.278 44.000 0.00 0.00 44.04 3.02
2599 3787 5.645056 TCATGTTGGAAATATGCCCTAGA 57.355 39.130 0.00 0.00 44.04 2.43
2600 3788 5.624159 TCATGTTGGAAATATGCCCTAGAG 58.376 41.667 0.00 0.00 44.04 2.43
2601 3789 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
2670 5291 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
2671 5292 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
2680 5301 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
2685 5306 9.547753 TGCTAGAATTGTATTGATAGGAAACTC 57.452 33.333 0.00 0.00 43.67 3.01
2686 5307 9.547753 GCTAGAATTGTATTGATAGGAAACTCA 57.452 33.333 0.00 0.00 43.67 3.41
2694 5315 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
2695 5316 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
2696 5317 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
2697 5318 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
2698 5319 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
2699 5320 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
2702 5323 6.384015 AGGAAACTCAGATACATGTGTGGATA 59.616 38.462 9.11 0.00 32.90 2.59
2703 5324 6.480320 GGAAACTCAGATACATGTGTGGATAC 59.520 42.308 9.11 0.00 0.00 2.24
2719 5340 5.692115 TGGATACATAGACAACACCATGT 57.308 39.130 0.00 0.00 46.17 3.21
2720 5341 5.670485 TGGATACATAGACAACACCATGTC 58.330 41.667 0.00 0.00 45.97 3.06
2721 5342 5.396324 TGGATACATAGACAACACCATGTCC 60.396 44.000 3.95 0.00 46.44 4.02
2728 5349 4.546829 GACAACACCATGTCCCTAGTAA 57.453 45.455 0.00 0.00 43.11 2.24
2729 5350 4.504858 GACAACACCATGTCCCTAGTAAG 58.495 47.826 0.00 0.00 43.11 2.34
2730 5351 3.270877 CAACACCATGTCCCTAGTAAGC 58.729 50.000 0.00 0.00 0.00 3.09
2731 5352 1.838077 ACACCATGTCCCTAGTAAGCC 59.162 52.381 0.00 0.00 0.00 4.35
2733 5354 2.103263 CACCATGTCCCTAGTAAGCCTC 59.897 54.545 0.00 0.00 0.00 4.70
2735 5356 3.206866 ACCATGTCCCTAGTAAGCCTCTA 59.793 47.826 0.00 0.00 0.00 2.43
2736 5357 3.829601 CCATGTCCCTAGTAAGCCTCTAG 59.170 52.174 0.00 0.00 35.86 2.43
2737 5358 4.475345 CATGTCCCTAGTAAGCCTCTAGT 58.525 47.826 0.00 0.00 34.72 2.57
2739 5360 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
2741 5362 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
2742 5363 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
2744 5365 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
2745 5366 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
2746 5367 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
2747 5368 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
2748 5369 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
2749 5370 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
2751 5372 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
2754 5375 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
2755 5376 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
2758 5379 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
2759 5380 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
2761 5382 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
2763 5384 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
2765 5386 5.028549 AGCTCGTTGATCAATAGATGGTT 57.971 39.130 19.51 6.05 33.72 3.67
2766 5387 6.161855 AGCTCGTTGATCAATAGATGGTTA 57.838 37.500 19.51 0.00 33.72 2.85
2767 5388 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
2768 5389 5.107837 GCTCGTTGATCAATAGATGGTTACG 60.108 44.000 19.51 12.22 33.72 3.18
2769 5390 5.286438 TCGTTGATCAATAGATGGTTACGG 58.714 41.667 12.12 0.00 33.72 4.02
2770 5391 5.047847 CGTTGATCAATAGATGGTTACGGT 58.952 41.667 12.12 0.00 33.72 4.83
2771 5392 5.522460 CGTTGATCAATAGATGGTTACGGTT 59.478 40.000 12.12 0.00 33.72 4.44
2772 5393 6.036735 CGTTGATCAATAGATGGTTACGGTTT 59.963 38.462 12.12 0.00 33.72 3.27
2773 5394 7.407337 GTTGATCAATAGATGGTTACGGTTTC 58.593 38.462 12.12 0.00 33.72 2.78
2774 5395 6.053005 TGATCAATAGATGGTTACGGTTTCC 58.947 40.000 0.00 0.00 33.72 3.13
2775 5396 5.687166 TCAATAGATGGTTACGGTTTCCT 57.313 39.130 0.00 0.00 0.00 3.36
2776 5397 5.424757 TCAATAGATGGTTACGGTTTCCTG 58.575 41.667 0.00 0.00 0.00 3.86
2777 5398 5.188163 TCAATAGATGGTTACGGTTTCCTGA 59.812 40.000 0.00 0.00 0.00 3.86
2778 5399 3.329929 AGATGGTTACGGTTTCCTGAC 57.670 47.619 0.00 0.00 0.00 3.51
2779 5400 2.027469 AGATGGTTACGGTTTCCTGACC 60.027 50.000 0.00 0.00 36.31 4.02
2780 5401 1.129917 TGGTTACGGTTTCCTGACCA 58.870 50.000 0.00 0.00 39.78 4.02
2781 5402 1.700739 TGGTTACGGTTTCCTGACCAT 59.299 47.619 0.00 0.00 39.78 3.55
2782 5403 2.081462 GGTTACGGTTTCCTGACCATG 58.919 52.381 0.00 0.00 39.78 3.66
2783 5404 2.081462 GTTACGGTTTCCTGACCATGG 58.919 52.381 11.19 11.19 39.78 3.66
2785 5406 0.036306 ACGGTTTCCTGACCATGGAC 59.964 55.000 21.47 13.94 39.78 4.02
2786 5407 0.036164 CGGTTTCCTGACCATGGACA 59.964 55.000 21.47 18.47 39.78 4.02
2788 5409 2.807676 GGTTTCCTGACCATGGACATT 58.192 47.619 21.47 0.00 39.57 2.71
2789 5410 2.493278 GGTTTCCTGACCATGGACATTG 59.507 50.000 21.47 12.72 39.57 2.82
2791 5412 1.667595 TCCTGACCATGGACATTGGA 58.332 50.000 21.47 18.93 0.00 3.53
2806 5427 5.756195 ACATTGGATGTCGTTGATAATGG 57.244 39.130 0.00 0.00 39.92 3.16
2807 5428 4.580167 ACATTGGATGTCGTTGATAATGGG 59.420 41.667 0.00 0.00 39.92 4.00
2808 5429 4.495690 TTGGATGTCGTTGATAATGGGA 57.504 40.909 0.00 0.00 0.00 4.37
2809 5430 4.705110 TGGATGTCGTTGATAATGGGAT 57.295 40.909 0.00 0.00 0.00 3.85
2810 5431 4.641396 TGGATGTCGTTGATAATGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
2811 5432 4.102367 TGGATGTCGTTGATAATGGGATCA 59.898 41.667 0.00 0.00 33.96 2.92
2812 5433 4.452455 GGATGTCGTTGATAATGGGATCAC 59.548 45.833 0.00 0.00 35.56 3.06
2813 5434 4.479786 TGTCGTTGATAATGGGATCACA 57.520 40.909 0.00 0.00 35.56 3.58
2814 5435 5.034852 TGTCGTTGATAATGGGATCACAT 57.965 39.130 4.06 4.06 35.56 3.21
2815 5436 5.056480 TGTCGTTGATAATGGGATCACATC 58.944 41.667 11.76 0.00 35.56 3.06
2816 5437 5.056480 GTCGTTGATAATGGGATCACATCA 58.944 41.667 11.76 2.91 35.56 3.07
2817 5438 5.702670 GTCGTTGATAATGGGATCACATCAT 59.297 40.000 11.76 0.88 35.56 2.45
2818 5439 6.205464 GTCGTTGATAATGGGATCACATCATT 59.795 38.462 11.76 9.08 35.56 2.57
2819 5440 7.387673 GTCGTTGATAATGGGATCACATCATTA 59.612 37.037 11.76 10.83 35.56 1.90
2820 5441 7.603784 TCGTTGATAATGGGATCACATCATTAG 59.396 37.037 11.76 1.42 36.97 1.73
2821 5442 7.148356 CGTTGATAATGGGATCACATCATTAGG 60.148 40.741 11.76 0.00 36.97 2.69
2822 5443 7.572546 TGATAATGGGATCACATCATTAGGA 57.427 36.000 11.76 0.55 36.97 2.94
2823 5444 7.627311 TGATAATGGGATCACATCATTAGGAG 58.373 38.462 11.76 0.00 36.97 3.69
2824 5445 7.458806 TGATAATGGGATCACATCATTAGGAGA 59.541 37.037 11.76 0.00 36.97 3.71
2825 5446 6.520021 AATGGGATCACATCATTAGGAGAA 57.480 37.500 11.76 0.00 30.35 2.87
2826 5447 6.715350 ATGGGATCACATCATTAGGAGAAT 57.285 37.500 4.06 0.00 0.00 2.40
2827 5448 5.872963 TGGGATCACATCATTAGGAGAATG 58.127 41.667 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.621532 TTTCTCTTCATGCAGTACTTGTTAAT 57.378 30.769 0.00 0.00 0.00 1.40
86 87 9.817365 CATATTTGAATTCTTGGATATGTCGAC 57.183 33.333 9.11 9.11 0.00 4.20
88 89 8.291740 TGCATATTTGAATTCTTGGATATGTCG 58.708 33.333 19.74 0.00 32.68 4.35
138 141 2.470821 GACAATAGCTCGCGTGGTATT 58.529 47.619 29.49 29.49 40.06 1.89
297 310 5.799213 ACACACAAAGCTAGCTAAGAGATT 58.201 37.500 19.70 4.25 0.00 2.40
299 312 4.873746 ACACACAAAGCTAGCTAAGAGA 57.126 40.909 19.70 0.00 0.00 3.10
301 314 5.364778 TCAAACACACAAAGCTAGCTAAGA 58.635 37.500 19.70 1.50 0.00 2.10
307 320 9.155975 AGATACTAATCAAACACACAAAGCTAG 57.844 33.333 0.00 0.00 34.28 3.42
337 350 2.427506 CCAAAGAACCAGCTACCACTC 58.572 52.381 0.00 0.00 0.00 3.51
484 542 3.672295 GAGAACCGGCCAGCCAGAG 62.672 68.421 9.78 0.00 35.37 3.35
485 543 3.706373 GAGAACCGGCCAGCCAGA 61.706 66.667 9.78 0.00 35.37 3.86
530 604 6.533723 TGTTGCTATCGACAGTTAATTACCTG 59.466 38.462 8.37 8.37 32.92 4.00
564 645 2.901042 CCTTACCTGGTCGCCTCC 59.099 66.667 0.63 0.00 0.00 4.30
597 702 3.826157 TGAGCATTTCTTCCCGTTGAATT 59.174 39.130 0.00 0.00 31.06 2.17
615 720 5.580297 GGATGTAGCTAGCTAATTGATGAGC 59.420 44.000 25.74 10.69 39.08 4.26
634 743 2.826428 GTCATGCATGACGTAGGATGT 58.174 47.619 36.65 0.00 46.46 3.06
695 809 7.396540 AAATGTTGGTCTGAGGTGATAAATC 57.603 36.000 0.00 0.00 0.00 2.17
719 833 5.613329 ACTAACCTGACGTGGTCATAAAAA 58.387 37.500 0.00 0.00 41.94 1.94
720 834 5.217978 ACTAACCTGACGTGGTCATAAAA 57.782 39.130 0.00 0.00 41.94 1.52
721 835 4.877378 ACTAACCTGACGTGGTCATAAA 57.123 40.909 0.00 0.00 41.94 1.40
722 836 4.877378 AACTAACCTGACGTGGTCATAA 57.123 40.909 0.00 0.00 41.94 1.90
723 837 4.877378 AAACTAACCTGACGTGGTCATA 57.123 40.909 0.00 0.00 41.94 2.15
724 838 3.764237 AAACTAACCTGACGTGGTCAT 57.236 42.857 0.00 0.00 41.94 3.06
725 839 3.133362 AGAAAACTAACCTGACGTGGTCA 59.867 43.478 0.00 0.00 39.83 4.02
754 868 7.013655 GGAAGTTTCCTCGTATGGTGTATACTA 59.986 40.741 4.17 0.00 44.11 1.82
755 869 6.183360 GGAAGTTTCCTCGTATGGTGTATACT 60.183 42.308 4.17 0.00 44.11 2.12
756 870 5.981915 GGAAGTTTCCTCGTATGGTGTATAC 59.018 44.000 3.63 0.00 44.11 1.47
757 871 6.152932 GGAAGTTTCCTCGTATGGTGTATA 57.847 41.667 3.63 0.00 44.11 1.47
758 872 5.019785 GGAAGTTTCCTCGTATGGTGTAT 57.980 43.478 3.63 0.00 44.11 2.29
781 897 8.747471 TGTATGCCATGAATCAATCAACTTTTA 58.253 29.630 0.00 0.00 42.54 1.52
782 898 7.613585 TGTATGCCATGAATCAATCAACTTTT 58.386 30.769 0.00 0.00 42.54 2.27
792 908 5.469760 CGGACTAAATGTATGCCATGAATCA 59.530 40.000 0.00 0.00 32.82 2.57
799 915 1.134640 ACGCGGACTAAATGTATGCCA 60.135 47.619 12.47 0.00 0.00 4.92
801 917 1.931172 ACACGCGGACTAAATGTATGC 59.069 47.619 12.47 0.00 0.00 3.14
805 921 1.296056 GGCACACGCGGACTAAATGT 61.296 55.000 12.47 0.00 39.92 2.71
806 922 1.423845 GGCACACGCGGACTAAATG 59.576 57.895 12.47 0.00 39.92 2.32
807 923 2.098233 CGGCACACGCGGACTAAAT 61.098 57.895 12.47 0.00 40.76 1.40
815 931 2.029970 AGTTATTTAATCGGCACACGCG 59.970 45.455 3.53 3.53 43.86 6.01
817 933 6.844279 GTCATTAGTTATTTAATCGGCACACG 59.156 38.462 0.00 0.00 46.11 4.49
818 934 7.130269 GGTCATTAGTTATTTAATCGGCACAC 58.870 38.462 0.00 0.00 0.00 3.82
819 935 6.824196 TGGTCATTAGTTATTTAATCGGCACA 59.176 34.615 0.00 0.00 0.00 4.57
820 936 7.254227 TGGTCATTAGTTATTTAATCGGCAC 57.746 36.000 0.00 0.00 0.00 5.01
822 938 9.394477 GAAATGGTCATTAGTTATTTAATCGGC 57.606 33.333 0.00 0.00 0.00 5.54
833 962 5.063880 GCCCGATAGAAATGGTCATTAGTT 58.936 41.667 0.00 0.00 39.76 2.24
835 964 4.003648 GGCCCGATAGAAATGGTCATTAG 58.996 47.826 0.00 0.00 39.76 1.73
864 993 2.813754 ACAGTCAACGCAAAGCATATGT 59.186 40.909 4.29 0.00 0.00 2.29
869 998 1.470494 TGAAACAGTCAACGCAAAGCA 59.530 42.857 0.00 0.00 31.51 3.91
870 999 1.846175 GTGAAACAGTCAACGCAAAGC 59.154 47.619 0.00 0.00 38.23 3.51
892 1028 3.126686 GCAGCAGAAAGAGAAGGTGATTC 59.873 47.826 0.00 0.00 38.28 2.52
934 1070 0.901124 TGTTGTGTGGCTTGGCTTTT 59.099 45.000 0.00 0.00 0.00 2.27
943 1079 0.865639 GCTTCGTTGTGTTGTGTGGC 60.866 55.000 0.00 0.00 0.00 5.01
965 1101 5.572896 CGTTTCTCAAAGCAACTGTCTTTTT 59.427 36.000 0.00 0.00 31.94 1.94
970 1106 3.944422 TCGTTTCTCAAAGCAACTGTC 57.056 42.857 0.00 0.00 0.00 3.51
982 1118 4.444388 GGCCATTTGAGTTTTTCGTTTCTC 59.556 41.667 0.00 0.00 0.00 2.87
985 1121 4.368315 GAGGCCATTTGAGTTTTTCGTTT 58.632 39.130 5.01 0.00 0.00 3.60
988 1124 2.558359 AGGAGGCCATTTGAGTTTTTCG 59.442 45.455 5.01 0.00 0.00 3.46
989 1125 3.829026 AGAGGAGGCCATTTGAGTTTTTC 59.171 43.478 5.01 0.00 0.00 2.29
1024 1160 1.135575 CAAAGCAAGAAGGGCGATGAC 60.136 52.381 0.00 0.00 36.08 3.06
1027 1163 1.598701 GCCAAAGCAAGAAGGGCGAT 61.599 55.000 0.00 0.00 39.53 4.58
1057 1193 0.467384 CTCGGATCAGAAGCCATGGT 59.533 55.000 14.67 0.00 0.00 3.55
1059 1195 0.883814 GGCTCGGATCAGAAGCCATG 60.884 60.000 22.04 3.26 44.42 3.66
1062 1198 2.110006 GGGCTCGGATCAGAAGCC 59.890 66.667 20.16 20.16 44.31 4.35
1080 1216 1.587043 CGACGCAGAAGTCCTGGAGA 61.587 60.000 0.00 0.00 43.13 3.71
1083 1219 2.811317 GCGACGCAGAAGTCCTGG 60.811 66.667 16.42 0.00 43.13 4.45
1365 1549 3.642141 AGTGACATTGGACCCAACTTTT 58.358 40.909 3.24 0.00 38.88 2.27
2036 2564 3.101643 ACTCACCACACCTGAGCTATA 57.898 47.619 0.00 0.00 39.08 1.31
2058 2586 3.539604 AGTTTAAGCTCTGCATGCTAGG 58.460 45.455 20.33 9.25 40.22 3.02
2093 2621 4.901868 AGAGAGATCGACCTGTACTATCC 58.098 47.826 0.00 0.00 0.00 2.59
2122 2650 3.157087 ACGAATTTCTTCCACTTGGCAT 58.843 40.909 0.00 0.00 34.44 4.40
2259 3239 4.012374 CAGAGATGTGCCAAACAAGGTAT 58.988 43.478 0.00 0.00 43.61 2.73
2265 3245 0.111061 AGCCAGAGATGTGCCAAACA 59.889 50.000 0.00 0.00 44.79 2.83
2323 3303 2.747446 GGCGGTGCTTCTTCTTAAATCA 59.253 45.455 0.00 0.00 0.00 2.57
2347 3327 0.846427 TGTTCCAAGGAGGCCCATCT 60.846 55.000 0.00 0.00 37.29 2.90
2359 3339 0.631753 TCCCCAACAGGTTGTTCCAA 59.368 50.000 10.91 0.00 38.77 3.53
2370 3350 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
2371 3351 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
2372 3352 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
2373 3353 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
2395 3375 6.175636 GATCTTGCGTGTGCGTATGATTTTT 61.176 40.000 7.57 0.00 43.47 1.94
2396 3376 4.727734 GATCTTGCGTGTGCGTATGATTTT 60.728 41.667 7.57 0.00 43.47 1.82
2397 3377 3.242413 GATCTTGCGTGTGCGTATGATTT 60.242 43.478 7.57 0.00 43.47 2.17
2398 3378 2.285220 GATCTTGCGTGTGCGTATGATT 59.715 45.455 7.57 0.00 43.47 2.57
2399 3379 1.860950 GATCTTGCGTGTGCGTATGAT 59.139 47.619 6.28 6.28 45.03 2.45
2406 3386 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
2407 3387 0.448990 CCACCATGATCTTGCGTGTG 59.551 55.000 19.42 14.50 0.00 3.82
2408 3388 0.036732 ACCACCATGATCTTGCGTGT 59.963 50.000 19.42 8.40 0.00 4.49
2409 3389 0.448990 CACCACCATGATCTTGCGTG 59.551 55.000 16.55 16.55 0.00 5.34
2410 3390 1.308069 GCACCACCATGATCTTGCGT 61.308 55.000 3.07 0.87 0.00 5.24
2412 3392 1.108776 ATGCACCACCATGATCTTGC 58.891 50.000 3.07 0.00 0.00 4.01
2413 3393 2.292569 GCTATGCACCACCATGATCTTG 59.707 50.000 0.00 1.60 0.00 3.02
2416 3396 1.971481 TGCTATGCACCACCATGATC 58.029 50.000 0.00 0.00 31.71 2.92
2417 3397 2.026641 GTTGCTATGCACCACCATGAT 58.973 47.619 0.00 0.00 38.71 2.45
2418 3398 1.462616 GTTGCTATGCACCACCATGA 58.537 50.000 0.00 0.00 38.71 3.07
2419 3399 0.099259 CGTTGCTATGCACCACCATG 59.901 55.000 0.00 0.00 38.71 3.66
2422 3402 0.391130 TCTCGTTGCTATGCACCACC 60.391 55.000 0.00 0.00 38.71 4.61
2423 3403 1.002366 CTCTCGTTGCTATGCACCAC 58.998 55.000 0.00 0.00 38.71 4.16
2424 3404 0.108186 CCTCTCGTTGCTATGCACCA 60.108 55.000 0.00 0.00 38.71 4.17
2425 3405 0.811616 CCCTCTCGTTGCTATGCACC 60.812 60.000 0.00 0.00 38.71 5.01
2426 3406 0.811616 CCCCTCTCGTTGCTATGCAC 60.812 60.000 0.00 0.00 38.71 4.57
2428 3408 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2429 3409 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2430 3410 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2433 3413 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2434 3414 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
2435 3415 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
2436 3416 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
2438 3418 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
2441 3421 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
2449 3429 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
2451 3431 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
2452 3432 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
2453 3433 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2454 3434 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2474 3454 0.509499 TGTTAACGCTTCCGCTTTCG 59.491 50.000 0.26 0.00 38.22 3.46
2475 3455 1.262151 TGTGTTAACGCTTCCGCTTTC 59.738 47.619 19.29 0.00 38.22 2.62
2476 3456 1.301423 TGTGTTAACGCTTCCGCTTT 58.699 45.000 19.29 0.00 38.22 3.51
2477 3457 1.003223 GTTGTGTTAACGCTTCCGCTT 60.003 47.619 19.29 0.00 38.22 4.68
2478 3458 0.584876 GTTGTGTTAACGCTTCCGCT 59.415 50.000 19.29 0.00 38.22 5.52
2479 3459 0.720173 CGTTGTGTTAACGCTTCCGC 60.720 55.000 19.29 5.19 36.82 5.54
2480 3460 3.338603 CGTTGTGTTAACGCTTCCG 57.661 52.632 19.29 13.98 36.82 4.30
2487 3675 2.286536 ACATCAACCGCGTTGTGTTAAC 60.287 45.455 16.97 0.00 43.23 2.01
2491 3679 1.144969 CTACATCAACCGCGTTGTGT 58.855 50.000 20.57 20.57 43.23 3.72
2494 3682 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2495 3683 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2496 3684 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2497 3685 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2498 3686 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
2499 3687 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
2500 3688 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
2502 3690 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
2514 3702 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
2515 3703 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
2517 3705 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
2518 3706 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
2526 3714 0.666913 CGGTACTTGATCGGTCGGAT 59.333 55.000 0.00 0.00 38.35 4.18
2529 3717 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
2530 3718 1.542544 CGTTCGGTACTTGATCGGTC 58.457 55.000 9.70 0.00 30.29 4.79
2531 3719 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
2533 3721 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
2536 3724 1.372004 CCGTGCGTTCGGTACTTGA 60.372 57.895 11.17 0.00 44.77 3.02
2544 3732 4.072088 GAAGGTGCCGTGCGTTCG 62.072 66.667 0.00 0.00 0.00 3.95
2550 3738 1.284982 CTGAACTCGAAGGTGCCGTG 61.285 60.000 0.00 0.00 0.00 4.94
2552 3740 2.383527 GCTGAACTCGAAGGTGCCG 61.384 63.158 0.00 0.00 0.00 5.69
2553 3741 1.301716 TGCTGAACTCGAAGGTGCC 60.302 57.895 0.00 0.00 0.00 5.01
2554 3742 0.880278 TGTGCTGAACTCGAAGGTGC 60.880 55.000 0.00 0.00 0.00 5.01
2555 3743 0.861837 GTGTGCTGAACTCGAAGGTG 59.138 55.000 0.00 0.00 0.00 4.00
2556 3744 0.597637 CGTGTGCTGAACTCGAAGGT 60.598 55.000 4.26 0.00 46.19 3.50
2557 3745 0.597637 ACGTGTGCTGAACTCGAAGG 60.598 55.000 16.41 0.00 46.19 3.46
2558 3746 1.190323 GAACGTGTGCTGAACTCGAAG 59.810 52.381 16.41 0.00 46.19 3.79
2562 3750 1.867233 ACATGAACGTGTGCTGAACTC 59.133 47.619 0.00 0.00 0.00 3.01
2563 3751 1.953559 ACATGAACGTGTGCTGAACT 58.046 45.000 0.00 0.00 0.00 3.01
2564 3752 2.375110 CAACATGAACGTGTGCTGAAC 58.625 47.619 0.00 0.00 31.49 3.18
2565 3753 1.333308 CCAACATGAACGTGTGCTGAA 59.667 47.619 0.00 0.00 31.49 3.02
2567 3755 0.943673 TCCAACATGAACGTGTGCTG 59.056 50.000 0.00 0.00 31.49 4.41
2568 3756 1.674359 TTCCAACATGAACGTGTGCT 58.326 45.000 0.00 0.00 31.49 4.40
2569 3757 2.483583 TTTCCAACATGAACGTGTGC 57.516 45.000 0.00 0.00 31.49 4.57
2571 3759 4.380444 GGCATATTTCCAACATGAACGTGT 60.380 41.667 0.00 0.00 0.00 4.49
2572 3760 4.104776 GGCATATTTCCAACATGAACGTG 58.895 43.478 0.00 0.00 0.00 4.49
2573 3761 3.130340 GGGCATATTTCCAACATGAACGT 59.870 43.478 0.00 0.00 0.00 3.99
2574 3762 3.381272 AGGGCATATTTCCAACATGAACG 59.619 43.478 0.00 0.00 0.00 3.95
2575 3763 5.827797 TCTAGGGCATATTTCCAACATGAAC 59.172 40.000 0.00 0.00 0.00 3.18
2576 3764 6.012337 TCTAGGGCATATTTCCAACATGAA 57.988 37.500 0.00 0.00 0.00 2.57
2645 5266 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
2654 5275 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
2656 5277 8.853077 TTCCTATCAATACAATTCTAGCATGG 57.147 34.615 0.00 0.00 0.00 3.66
2659 5280 9.547753 GAGTTTCCTATCAATACAATTCTAGCA 57.452 33.333 0.00 0.00 0.00 3.49
2660 5281 9.547753 TGAGTTTCCTATCAATACAATTCTAGC 57.452 33.333 0.00 0.00 0.00 3.42
2669 5290 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
2670 5291 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
2671 5292 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
2672 5293 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
2674 5295 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
2675 5296 6.384015 TCCACACATGTATCTGAGTTTCCTAT 59.616 38.462 0.00 0.00 0.00 2.57
2676 5297 5.719563 TCCACACATGTATCTGAGTTTCCTA 59.280 40.000 0.00 0.00 0.00 2.94
2677 5298 4.532126 TCCACACATGTATCTGAGTTTCCT 59.468 41.667 0.00 0.00 0.00 3.36
2678 5299 4.832248 TCCACACATGTATCTGAGTTTCC 58.168 43.478 0.00 0.00 0.00 3.13
2679 5300 7.041721 TGTATCCACACATGTATCTGAGTTTC 58.958 38.462 0.00 0.00 0.00 2.78
2680 5301 6.946340 TGTATCCACACATGTATCTGAGTTT 58.054 36.000 0.00 0.00 0.00 2.66
2683 5304 8.026026 GTCTATGTATCCACACATGTATCTGAG 58.974 40.741 0.00 0.00 39.46 3.35
2685 5306 7.661040 TGTCTATGTATCCACACATGTATCTG 58.339 38.462 0.00 0.00 39.46 2.90
2686 5307 7.839680 TGTCTATGTATCCACACATGTATCT 57.160 36.000 0.00 0.00 39.46 1.98
2687 5308 7.926018 TGTTGTCTATGTATCCACACATGTATC 59.074 37.037 0.00 0.00 39.46 2.24
2688 5309 7.710907 GTGTTGTCTATGTATCCACACATGTAT 59.289 37.037 0.00 0.00 39.46 2.29
2689 5310 7.039270 GTGTTGTCTATGTATCCACACATGTA 58.961 38.462 0.00 0.00 39.46 2.29
2691 5312 5.294306 GGTGTTGTCTATGTATCCACACATG 59.706 44.000 0.00 0.00 39.46 3.21
2692 5313 5.045942 TGGTGTTGTCTATGTATCCACACAT 60.046 40.000 0.00 0.00 41.88 3.21
2693 5314 4.284746 TGGTGTTGTCTATGTATCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
2694 5315 4.827692 TGGTGTTGTCTATGTATCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
2695 5316 5.045942 ACATGGTGTTGTCTATGTATCCACA 60.046 40.000 0.00 0.00 39.52 4.17
2696 5317 5.428253 ACATGGTGTTGTCTATGTATCCAC 58.572 41.667 0.00 0.00 32.41 4.02
2697 5318 5.396324 GGACATGGTGTTGTCTATGTATCCA 60.396 44.000 0.00 0.00 44.39 3.41
2698 5319 5.057149 GGACATGGTGTTGTCTATGTATCC 58.943 45.833 0.00 0.00 44.39 2.59
2699 5320 5.057149 GGGACATGGTGTTGTCTATGTATC 58.943 45.833 0.00 0.00 44.39 2.24
2702 5323 2.912956 AGGGACATGGTGTTGTCTATGT 59.087 45.455 0.00 0.00 44.39 2.29
2703 5324 3.634397 AGGGACATGGTGTTGTCTATG 57.366 47.619 0.00 0.00 44.39 2.23
2704 5325 4.362677 ACTAGGGACATGGTGTTGTCTAT 58.637 43.478 0.00 0.00 44.39 1.98
2705 5326 3.786553 ACTAGGGACATGGTGTTGTCTA 58.213 45.455 0.00 0.00 44.39 2.59
2706 5327 2.621070 ACTAGGGACATGGTGTTGTCT 58.379 47.619 0.00 0.00 44.39 3.41
2707 5328 4.504858 CTTACTAGGGACATGGTGTTGTC 58.495 47.826 0.00 0.00 44.27 3.18
2708 5329 3.307480 GCTTACTAGGGACATGGTGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
2709 5330 3.270877 GCTTACTAGGGACATGGTGTTG 58.729 50.000 0.00 0.00 0.00 3.33
2711 5332 1.838077 GGCTTACTAGGGACATGGTGT 59.162 52.381 0.00 0.00 0.00 4.16
2712 5333 2.103263 GAGGCTTACTAGGGACATGGTG 59.897 54.545 0.00 0.00 0.00 4.17
2714 5335 2.683768 AGAGGCTTACTAGGGACATGG 58.316 52.381 0.00 0.00 0.00 3.66
2715 5336 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
2717 5338 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
2718 5339 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
2719 5340 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
2720 5341 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
2721 5342 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
2723 5344 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
2724 5345 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
2725 5346 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
2726 5347 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
2728 5349 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
2729 5350 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
2730 5351 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
2731 5352 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
2733 5354 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
2735 5356 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
2736 5357 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
2737 5358 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
2739 5360 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
2741 5362 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
2742 5363 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
2744 5365 5.107837 CGTAACCATCTATTGATCAACGAGC 60.108 44.000 11.07 0.00 0.00 5.03
2745 5366 5.402568 CCGTAACCATCTATTGATCAACGAG 59.597 44.000 11.07 11.28 0.00 4.18
2746 5367 5.163488 ACCGTAACCATCTATTGATCAACGA 60.163 40.000 11.07 10.80 0.00 3.85
2747 5368 5.047847 ACCGTAACCATCTATTGATCAACG 58.952 41.667 11.07 6.28 0.00 4.10
2748 5369 6.920569 AACCGTAACCATCTATTGATCAAC 57.079 37.500 11.07 0.00 0.00 3.18
2749 5370 6.540914 GGAAACCGTAACCATCTATTGATCAA 59.459 38.462 11.26 11.26 0.00 2.57
2751 5372 6.202954 CAGGAAACCGTAACCATCTATTGATC 59.797 42.308 0.00 0.00 0.00 2.92
2754 5375 5.293569 GTCAGGAAACCGTAACCATCTATTG 59.706 44.000 0.00 0.00 0.00 1.90
2755 5376 5.425630 GTCAGGAAACCGTAACCATCTATT 58.574 41.667 0.00 0.00 0.00 1.73
2758 5379 2.027469 GGTCAGGAAACCGTAACCATCT 60.027 50.000 0.00 0.00 0.00 2.90
2759 5380 2.289819 TGGTCAGGAAACCGTAACCATC 60.290 50.000 0.00 0.00 42.62 3.51
2761 5382 1.129917 TGGTCAGGAAACCGTAACCA 58.870 50.000 0.00 0.00 42.62 3.67
2763 5384 2.081462 CCATGGTCAGGAAACCGTAAC 58.919 52.381 2.57 0.00 42.62 2.50
2765 5386 1.276989 GTCCATGGTCAGGAAACCGTA 59.723 52.381 12.58 0.00 42.62 4.02
2766 5387 0.036306 GTCCATGGTCAGGAAACCGT 59.964 55.000 12.58 0.00 42.62 4.83
2767 5388 0.036164 TGTCCATGGTCAGGAAACCG 59.964 55.000 12.58 0.00 42.62 4.44
2768 5389 2.493278 CAATGTCCATGGTCAGGAAACC 59.507 50.000 16.79 0.00 36.80 3.27
2769 5390 2.493278 CCAATGTCCATGGTCAGGAAAC 59.507 50.000 16.79 4.30 36.80 2.78
2770 5391 2.378208 TCCAATGTCCATGGTCAGGAAA 59.622 45.455 16.79 1.08 39.09 3.13
2771 5392 1.991813 TCCAATGTCCATGGTCAGGAA 59.008 47.619 16.79 0.75 39.09 3.36
2772 5393 1.667595 TCCAATGTCCATGGTCAGGA 58.332 50.000 16.79 15.06 39.09 3.86
2773 5394 2.304092 CATCCAATGTCCATGGTCAGG 58.696 52.381 16.79 13.14 39.09 3.86
2774 5395 3.008835 ACATCCAATGTCCATGGTCAG 57.991 47.619 16.79 4.75 39.92 3.51
2785 5406 4.821260 TCCCATTATCAACGACATCCAATG 59.179 41.667 0.00 0.00 0.00 2.82
2786 5407 5.047566 TCCCATTATCAACGACATCCAAT 57.952 39.130 0.00 0.00 0.00 3.16
2788 5409 4.102367 TGATCCCATTATCAACGACATCCA 59.898 41.667 0.00 0.00 32.97 3.41
2789 5410 4.452455 GTGATCCCATTATCAACGACATCC 59.548 45.833 0.00 0.00 37.61 3.51
2791 5412 5.034852 TGTGATCCCATTATCAACGACAT 57.965 39.130 0.00 0.00 37.61 3.06
2795 5416 6.564709 AATGATGTGATCCCATTATCAACG 57.435 37.500 0.00 0.00 37.61 4.10
2796 5417 7.884877 TCCTAATGATGTGATCCCATTATCAAC 59.115 37.037 0.00 0.00 37.61 3.18
2797 5418 7.987820 TCCTAATGATGTGATCCCATTATCAA 58.012 34.615 0.00 0.00 37.61 2.57
2798 5419 7.458806 TCTCCTAATGATGTGATCCCATTATCA 59.541 37.037 0.00 0.00 33.79 2.15
2799 5420 7.855375 TCTCCTAATGATGTGATCCCATTATC 58.145 38.462 0.00 0.00 33.79 1.75
2801 5422 7.631510 TTCTCCTAATGATGTGATCCCATTA 57.368 36.000 0.00 0.00 33.21 1.90
2802 5423 6.520021 TTCTCCTAATGATGTGATCCCATT 57.480 37.500 0.00 0.00 35.09 3.16
2803 5424 6.482524 CATTCTCCTAATGATGTGATCCCAT 58.517 40.000 0.00 0.00 0.00 4.00
2804 5425 5.872963 CATTCTCCTAATGATGTGATCCCA 58.127 41.667 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.