Multiple sequence alignment - TraesCS3D01G010800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G010800 chr3D 100.000 2812 0 0 1 2812 4012386 4009575 0.000000e+00 5193
1 TraesCS3D01G010800 chr3D 92.252 968 68 5 1016 1977 4045229 4044263 0.000000e+00 1365
2 TraesCS3D01G010800 chr3D 88.469 1006 89 20 1139 2140 4043840 4042858 0.000000e+00 1190
3 TraesCS3D01G010800 chr3D 87.636 550 65 3 2265 2812 4043123 4042575 1.100000e-178 636
4 TraesCS3D01G010800 chr3D 83.448 580 96 0 1245 1824 4046235 4046814 8.860000e-150 540
5 TraesCS3D01G010800 chr3A 86.744 2150 168 61 3 2082 9572244 9574346 0.000000e+00 2283
6 TraesCS3D01G010800 chr3A 88.182 990 89 15 1016 1977 9555996 9556985 0.000000e+00 1155
7 TraesCS3D01G010800 chr3A 81.761 159 25 4 2546 2701 9574668 9574825 2.270000e-26 130
8 TraesCS3D01G010800 chr7B 83.363 571 95 0 1244 1814 639926305 639926875 1.920000e-146 529
9 TraesCS3D01G010800 chr7B 83.363 571 95 0 1244 1814 639945951 639946521 1.920000e-146 529
10 TraesCS3D01G010800 chr7A 83.363 571 95 0 1244 1814 669215370 669215940 1.920000e-146 529
11 TraesCS3D01G010800 chr7D 82.990 582 99 0 1244 1825 577201240 577201821 6.900000e-146 527


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G010800 chr3D 4009575 4012386 2811 True 5193.000000 5193 100.000000 1 2812 1 chr3D.!!$R1 2811
1 TraesCS3D01G010800 chr3D 4042575 4045229 2654 True 1063.666667 1365 89.452333 1016 2812 3 chr3D.!!$R2 1796
2 TraesCS3D01G010800 chr3D 4046235 4046814 579 False 540.000000 540 83.448000 1245 1824 1 chr3D.!!$F1 579
3 TraesCS3D01G010800 chr3A 9572244 9574825 2581 False 1206.500000 2283 84.252500 3 2701 2 chr3A.!!$F2 2698
4 TraesCS3D01G010800 chr3A 9555996 9556985 989 False 1155.000000 1155 88.182000 1016 1977 1 chr3A.!!$F1 961
5 TraesCS3D01G010800 chr7B 639926305 639926875 570 False 529.000000 529 83.363000 1244 1814 1 chr7B.!!$F1 570
6 TraesCS3D01G010800 chr7B 639945951 639946521 570 False 529.000000 529 83.363000 1244 1814 1 chr7B.!!$F2 570
7 TraesCS3D01G010800 chr7A 669215370 669215940 570 False 529.000000 529 83.363000 1244 1814 1 chr7A.!!$F1 570
8 TraesCS3D01G010800 chr7D 577201240 577201821 581 False 527.000000 527 82.990000 1244 1825 1 chr7D.!!$F1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 398 0.031585 GTGTATGCATGCATGGCCAG 59.968 55.0 37.43 4.54 37.82 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2125 0.103208 CTAAGCAAGGGTCGCGAGAT 59.897 55.0 10.24 0.0 45.19 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.953466 TATGTACGCCAGTTGAGTCC 57.047 50.000 0.00 0.00 0.00 3.85
54 55 9.513906 TTGAGTCCATCAATAGTTTGTGATTAA 57.486 29.630 0.00 0.00 43.09 1.40
59 60 7.914871 TCCATCAATAGTTTGTGATTAAATGCG 59.085 33.333 0.00 0.00 32.06 4.73
71 72 9.964303 TTGTGATTAAATGCGATGCTAAATATT 57.036 25.926 0.00 0.00 0.00 1.28
119 120 2.222027 GTTCACCCAGTGTTGAGAAGG 58.778 52.381 0.00 0.00 34.79 3.46
127 128 3.614092 CAGTGTTGAGAAGGCATACCAT 58.386 45.455 0.00 0.00 39.06 3.55
180 181 2.439104 GGGGCTCGGATCAGAAGCT 61.439 63.158 13.63 0.00 0.00 3.74
195 196 2.302445 AGAAGCTATAGCCTGCCATGAG 59.698 50.000 21.17 0.00 43.38 2.90
209 210 0.169672 CATGAGGCCAACGCAAGAAG 59.830 55.000 5.01 0.00 43.62 2.85
210 211 0.036732 ATGAGGCCAACGCAAGAAGA 59.963 50.000 5.01 0.00 43.62 2.87
224 225 3.249917 CAAGAAGAGCGAAGAGAAGGAC 58.750 50.000 0.00 0.00 0.00 3.85
236 237 4.890499 AGAGAAGGACATAGGAAGAGGA 57.110 45.455 0.00 0.00 0.00 3.71
251 252 3.078891 AGAGGAGGCCATTTGAGTTTC 57.921 47.619 5.01 0.00 0.00 2.78
252 253 2.646798 AGAGGAGGCCATTTGAGTTTCT 59.353 45.455 5.01 0.00 0.00 2.52
253 254 3.075134 AGAGGAGGCCATTTGAGTTTCTT 59.925 43.478 5.01 0.00 0.00 2.52
254 255 3.829026 GAGGAGGCCATTTGAGTTTCTTT 59.171 43.478 5.01 0.00 0.00 2.52
265 266 7.064966 CCATTTGAGTTTCTTTTTGCTGAAAGT 59.935 33.333 10.69 0.00 38.20 2.66
267 268 8.687824 TTTGAGTTTCTTTTTGCTGAAAGTAG 57.312 30.769 10.69 0.00 36.38 2.57
268 269 6.265577 TGAGTTTCTTTTTGCTGAAAGTAGC 58.734 36.000 10.69 0.00 43.95 3.58
277 279 2.618241 TGCTGAAAGTAGCTGTGTTTGG 59.382 45.455 0.00 0.00 44.01 3.28
294 296 1.169577 TGGTGCTTCGTTGTGTTGTT 58.830 45.000 0.00 0.00 0.00 2.83
295 297 1.135546 TGGTGCTTCGTTGTGTTGTTG 60.136 47.619 0.00 0.00 0.00 3.33
371 374 3.670991 TGTGAAACAGTCAACAAAAACGC 59.329 39.130 0.00 0.00 45.67 4.84
395 398 0.031585 GTGTATGCATGCATGGCCAG 59.968 55.000 37.43 4.54 37.82 4.85
396 399 0.106619 TGTATGCATGCATGGCCAGA 60.107 50.000 37.43 17.97 37.82 3.86
412 415 6.012337 TGGCCAGATAGAAATGGTCATTAA 57.988 37.500 0.00 0.00 45.99 1.40
444 447 1.153745 GGAGCAGGTGTAGAGTGCG 60.154 63.158 0.00 0.00 42.26 5.34
445 448 1.587054 GAGCAGGTGTAGAGTGCGT 59.413 57.895 0.00 0.00 42.26 5.24
468 471 2.389962 CCAAAACATGGCCTGAATGG 57.610 50.000 3.32 7.59 43.80 3.16
474 477 3.323774 ACATGGCCTGAATGGATCAAT 57.676 42.857 3.32 0.00 37.67 2.57
479 482 3.130869 TGGCCTGAATGGATCAATTTTCG 59.869 43.478 3.32 0.00 37.67 3.46
485 488 6.194796 TGAATGGATCAATTTTCGGAAGTC 57.805 37.500 0.00 0.00 34.30 3.01
491 494 7.165485 TGGATCAATTTTCGGAAGTCTCTTTA 58.835 34.615 0.00 0.00 0.00 1.85
492 495 7.119262 TGGATCAATTTTCGGAAGTCTCTTTAC 59.881 37.037 0.00 0.00 0.00 2.01
512 515 7.554118 TCTTTACGTATGGTGTACTACTAGCTT 59.446 37.037 0.00 0.00 0.00 3.74
520 523 7.771927 TGGTGTACTACTAGCTTAGAAAACT 57.228 36.000 0.00 0.00 0.00 2.66
531 534 5.608449 AGCTTAGAAAACTAACCTGACGTT 58.392 37.500 0.00 0.00 38.57 3.99
543 546 1.502231 CTGACGTTGTCTTGGTCTGG 58.498 55.000 0.00 0.00 33.15 3.86
583 588 9.998106 GATGTATGGATTACACCACTTTATACT 57.002 33.333 0.00 0.00 43.46 2.12
589 594 7.101054 GGATTACACCACTTTATACTGTGTCA 58.899 38.462 0.00 0.00 40.39 3.58
662 672 5.994887 TGGTGTTGAATATATGGCGTAAC 57.005 39.130 0.00 0.00 0.00 2.50
675 685 1.562017 GCGTAACCTTGAGAGCTAGC 58.438 55.000 6.62 6.62 0.00 3.42
677 687 2.358267 GCGTAACCTTGAGAGCTAGCTA 59.642 50.000 19.38 0.00 0.00 3.32
678 688 3.549221 GCGTAACCTTGAGAGCTAGCTAG 60.549 52.174 19.38 16.84 0.00 3.42
679 689 3.628487 CGTAACCTTGAGAGCTAGCTAGT 59.372 47.826 19.38 8.16 0.00 2.57
680 690 4.096682 CGTAACCTTGAGAGCTAGCTAGTT 59.903 45.833 19.38 16.41 0.00 2.24
681 691 4.464069 AACCTTGAGAGCTAGCTAGTTG 57.536 45.455 19.38 7.05 0.00 3.16
683 693 4.285863 ACCTTGAGAGCTAGCTAGTTGAT 58.714 43.478 19.38 7.09 0.00 2.57
685 695 4.584325 CCTTGAGAGCTAGCTAGTTGATCT 59.416 45.833 19.38 17.94 0.00 2.75
686 696 5.767665 CCTTGAGAGCTAGCTAGTTGATCTA 59.232 44.000 19.38 11.57 0.00 1.98
687 697 6.072508 CCTTGAGAGCTAGCTAGTTGATCTAG 60.073 46.154 19.38 18.43 46.39 2.43
712 722 1.776662 TAACCTAGTCGCCTCATGCT 58.223 50.000 0.00 0.00 38.05 3.79
729 743 0.948678 GCTTGGTTTGTTGCTACCGA 59.051 50.000 0.00 0.00 37.23 4.69
754 783 8.908786 AGAGTTAATTAATTAGCTAGCATGCA 57.091 30.769 21.98 5.01 34.57 3.96
786 815 2.566529 GCCAGCCAGTTTAACCGC 59.433 61.111 0.00 0.00 0.00 5.68
787 816 2.867472 CCAGCCAGTTTAACCGCG 59.133 61.111 0.00 0.00 0.00 6.46
825 855 1.045407 TAGACACGTGGGTTGCTCTT 58.955 50.000 21.57 0.00 0.00 2.85
849 882 4.399004 AGAGACCATGTCAATCTAGTGC 57.601 45.455 0.00 0.00 34.60 4.40
873 907 4.814234 TGCTATGTACGCCTTGGATTTTAG 59.186 41.667 0.00 0.00 0.00 1.85
875 909 5.296035 GCTATGTACGCCTTGGATTTTAGTT 59.704 40.000 0.00 0.00 0.00 2.24
876 910 5.560966 ATGTACGCCTTGGATTTTAGTTG 57.439 39.130 0.00 0.00 0.00 3.16
877 911 3.754323 TGTACGCCTTGGATTTTAGTTGG 59.246 43.478 0.00 0.00 0.00 3.77
878 912 1.544246 ACGCCTTGGATTTTAGTTGGC 59.456 47.619 0.00 0.00 35.94 4.52
879 913 1.543802 CGCCTTGGATTTTAGTTGGCA 59.456 47.619 0.00 0.00 38.87 4.92
880 914 2.029470 CGCCTTGGATTTTAGTTGGCAA 60.029 45.455 0.00 0.00 38.87 4.52
882 916 3.006859 GCCTTGGATTTTAGTTGGCAACT 59.993 43.478 32.96 32.96 45.40 3.16
883 917 4.809673 CCTTGGATTTTAGTTGGCAACTC 58.190 43.478 34.23 20.10 41.77 3.01
884 918 4.475944 CTTGGATTTTAGTTGGCAACTCG 58.524 43.478 34.23 10.25 41.77 4.18
885 919 2.817258 TGGATTTTAGTTGGCAACTCGG 59.183 45.455 34.23 0.00 41.77 4.63
886 920 2.817844 GGATTTTAGTTGGCAACTCGGT 59.182 45.455 34.23 19.26 41.77 4.69
911 949 5.466058 CAGCTGCAGCCAAGCTATATATATC 59.534 44.000 34.39 1.27 43.38 1.63
912 950 4.754114 GCTGCAGCCAAGCTATATATATCC 59.246 45.833 28.76 0.00 36.40 2.59
913 951 5.685861 GCTGCAGCCAAGCTATATATATCCA 60.686 44.000 28.76 0.00 36.40 3.41
914 952 6.505048 TGCAGCCAAGCTATATATATCCAT 57.495 37.500 0.00 0.00 36.40 3.41
916 954 7.674120 TGCAGCCAAGCTATATATATCCATAG 58.326 38.462 0.00 0.00 36.40 2.23
940 991 1.065854 GCCACAGAATCAGCTACCACT 60.066 52.381 0.00 0.00 0.00 4.00
941 992 2.616510 GCCACAGAATCAGCTACCACTT 60.617 50.000 0.00 0.00 0.00 3.16
963 1014 4.560128 TCTCAACACACAAAGCTAGCTAG 58.440 43.478 19.70 16.84 0.00 3.42
964 1015 4.280929 TCTCAACACACAAAGCTAGCTAGA 59.719 41.667 25.15 10.01 0.00 2.43
965 1016 4.307432 TCAACACACAAAGCTAGCTAGAC 58.693 43.478 25.15 15.03 0.00 2.59
966 1017 3.320673 ACACACAAAGCTAGCTAGACC 57.679 47.619 25.15 7.60 0.00 3.85
967 1018 2.028020 ACACACAAAGCTAGCTAGACCC 60.028 50.000 25.15 6.84 0.00 4.46
968 1019 2.028112 CACACAAAGCTAGCTAGACCCA 60.028 50.000 25.15 0.00 0.00 4.51
975 1026 4.186077 AGCTAGCTAGACCCATAGACAA 57.814 45.455 25.15 0.00 0.00 3.18
977 1028 3.304794 GCTAGCTAGACCCATAGACAACG 60.305 52.174 25.15 0.00 0.00 4.10
986 1037 3.263425 ACCCATAGACAACGTCCATTTCT 59.737 43.478 0.00 0.00 32.18 2.52
990 1041 1.616865 AGACAACGTCCATTTCTCCGA 59.383 47.619 0.00 0.00 32.18 4.55
991 1042 2.233922 AGACAACGTCCATTTCTCCGAT 59.766 45.455 0.00 0.00 32.18 4.18
995 1046 4.081862 ACAACGTCCATTTCTCCGATAGAA 60.082 41.667 0.00 0.00 42.62 2.10
996 1047 4.043037 ACGTCCATTTCTCCGATAGAAC 57.957 45.455 0.27 0.00 44.02 3.01
1008 1059 3.199946 TCCGATAGAACAAAATGGCCTCT 59.800 43.478 3.32 0.00 39.76 3.69
1011 1062 5.335127 CGATAGAACAAAATGGCCTCTTTG 58.665 41.667 21.56 21.56 37.08 2.77
1018 1069 2.222227 AATGGCCTCTTTGTCTTCCC 57.778 50.000 3.32 0.00 0.00 3.97
1053 1104 6.643388 TCTCTTCACTGCTATTCTTGCATTA 58.357 36.000 0.00 0.00 39.86 1.90
1065 1116 3.273434 TCTTGCATTAGTCTCATGGCAC 58.727 45.455 0.00 0.00 0.00 5.01
1166 1217 6.688637 TCCTTTCATCACTGCATATTTGAG 57.311 37.500 0.00 0.00 0.00 3.02
1181 1232 7.774625 TGCATATTTGAGTTCTTGGATATGTCA 59.225 33.333 0.00 0.00 32.68 3.58
1346 1419 3.195610 ACATGCCGAGAGACACAAAGATA 59.804 43.478 0.00 0.00 0.00 1.98
1361 1434 2.403252 AGATAAGCAAGGTTGGGTCG 57.597 50.000 0.00 0.00 0.00 4.79
1496 1569 1.763968 CCACTGAGATCCTCACCGTA 58.236 55.000 0.00 0.00 35.39 4.02
1763 1836 2.489073 GGCCTTTCAGGTGGAGAAGAAA 60.489 50.000 0.00 0.00 37.80 2.52
1836 1909 2.992689 TTGCACCGGTCGCTAGGA 60.993 61.111 23.38 4.93 0.00 2.94
1843 1916 0.174845 CCGGTCGCTAGGATTTGACA 59.825 55.000 0.00 0.00 33.04 3.58
1865 1938 9.081997 TGACAACAAAATTGTATTCTTTGTGAC 57.918 29.630 0.00 0.00 41.25 3.67
1988 2099 8.333908 CAAGTGCTCATGATTACAATCTCTAAC 58.666 37.037 0.00 0.00 36.39 2.34
1991 2102 9.534565 GTGCTCATGATTACAATCTCTAACTTA 57.465 33.333 0.00 0.00 36.39 2.24
2014 2125 4.577834 TTCGATTACTGCATGTCGGATA 57.422 40.909 9.32 0.00 35.01 2.59
2027 2138 0.536687 TCGGATATCTCGCGACCCTT 60.537 55.000 3.71 0.00 0.00 3.95
2038 2149 2.889045 TCGCGACCCTTGCTTAGTATAT 59.111 45.455 3.71 0.00 0.00 0.86
2039 2150 4.074259 TCGCGACCCTTGCTTAGTATATA 58.926 43.478 3.71 0.00 0.00 0.86
2040 2151 4.703575 TCGCGACCCTTGCTTAGTATATAT 59.296 41.667 3.71 0.00 0.00 0.86
2041 2152 5.882000 TCGCGACCCTTGCTTAGTATATATA 59.118 40.000 3.71 0.00 0.00 0.86
2047 2158 5.221461 CCCTTGCTTAGTATATATAGGCCGG 60.221 48.000 0.00 0.00 0.00 6.13
2056 2167 7.623999 AGTATATATAGGCCGGTACTAGCTA 57.376 40.000 1.90 0.00 0.00 3.32
2066 2178 2.743126 CGGTACTAGCTAGGAAGGATCG 59.257 54.545 24.35 5.14 0.00 3.69
2075 2187 3.556365 GCTAGGAAGGATCGTTGCTAAAC 59.444 47.826 23.80 17.19 38.55 2.01
2085 2197 6.653320 AGGATCGTTGCTAAACAAACTTATGA 59.347 34.615 0.00 0.00 40.82 2.15
2087 2199 7.968405 GGATCGTTGCTAAACAAACTTATGAAT 59.032 33.333 0.00 0.00 40.82 2.57
2088 2200 8.673626 ATCGTTGCTAAACAAACTTATGAATG 57.326 30.769 0.00 0.00 40.82 2.67
2089 2201 7.081349 TCGTTGCTAAACAAACTTATGAATGG 58.919 34.615 0.00 0.00 40.82 3.16
2090 2202 6.861055 CGTTGCTAAACAAACTTATGAATGGT 59.139 34.615 0.00 0.00 40.82 3.55
2091 2203 7.148983 CGTTGCTAAACAAACTTATGAATGGTG 60.149 37.037 0.00 0.00 40.82 4.17
2092 2204 6.155827 TGCTAAACAAACTTATGAATGGTGC 58.844 36.000 0.00 0.00 0.00 5.01
2093 2205 6.015519 TGCTAAACAAACTTATGAATGGTGCT 60.016 34.615 0.00 0.00 0.00 4.40
2094 2206 6.868339 GCTAAACAAACTTATGAATGGTGCTT 59.132 34.615 0.00 0.00 0.00 3.91
2097 2209 5.954335 ACAAACTTATGAATGGTGCTTAGC 58.046 37.500 0.00 0.00 0.00 3.09
2099 2211 6.884295 ACAAACTTATGAATGGTGCTTAGCTA 59.116 34.615 5.60 0.00 0.00 3.32
2100 2212 7.393234 ACAAACTTATGAATGGTGCTTAGCTAA 59.607 33.333 5.60 5.94 0.00 3.09
2116 2228 7.339732 CTTAGCTAAGCTATGATTTACACGG 57.660 40.000 20.13 0.00 41.01 4.94
2117 2229 4.632153 AGCTAAGCTATGATTTACACGGG 58.368 43.478 0.00 0.00 36.99 5.28
2119 2231 2.256117 AGCTATGATTTACACGGGGC 57.744 50.000 0.00 0.00 0.00 5.80
2120 2232 1.768870 AGCTATGATTTACACGGGGCT 59.231 47.619 0.00 0.00 0.00 5.19
2124 2236 4.154195 GCTATGATTTACACGGGGCTAATG 59.846 45.833 0.00 0.00 0.00 1.90
2125 2237 2.925724 TGATTTACACGGGGCTAATGG 58.074 47.619 0.00 0.00 0.00 3.16
2126 2238 2.240160 TGATTTACACGGGGCTAATGGT 59.760 45.455 0.00 0.00 0.00 3.55
2127 2239 2.883122 TTTACACGGGGCTAATGGTT 57.117 45.000 0.00 0.00 0.00 3.67
2131 2243 0.541863 CACGGGGCTAATGGTTCTCT 59.458 55.000 0.00 0.00 0.00 3.10
2132 2244 0.541863 ACGGGGCTAATGGTTCTCTG 59.458 55.000 0.00 0.00 0.00 3.35
2133 2245 0.541863 CGGGGCTAATGGTTCTCTGT 59.458 55.000 0.00 0.00 0.00 3.41
2134 2246 1.065418 CGGGGCTAATGGTTCTCTGTT 60.065 52.381 0.00 0.00 0.00 3.16
2135 2247 2.369394 GGGGCTAATGGTTCTCTGTTG 58.631 52.381 0.00 0.00 0.00 3.33
2137 2249 3.054655 GGGGCTAATGGTTCTCTGTTGTA 60.055 47.826 0.00 0.00 0.00 2.41
2140 2252 6.465894 GGGGCTAATGGTTCTCTGTTGTATAT 60.466 42.308 0.00 0.00 0.00 0.86
2141 2253 7.256547 GGGGCTAATGGTTCTCTGTTGTATATA 60.257 40.741 0.00 0.00 0.00 0.86
2149 2261 9.374711 TGGTTCTCTGTTGTATATATATCACCA 57.625 33.333 0.00 0.00 0.00 4.17
2188 2300 9.185680 ACCTACAAACATTACATAAATCCTTCC 57.814 33.333 0.00 0.00 0.00 3.46
2189 2301 9.408648 CCTACAAACATTACATAAATCCTTCCT 57.591 33.333 0.00 0.00 0.00 3.36
2191 2303 7.547227 ACAAACATTACATAAATCCTTCCTGC 58.453 34.615 0.00 0.00 0.00 4.85
2192 2304 7.178274 ACAAACATTACATAAATCCTTCCTGCA 59.822 33.333 0.00 0.00 0.00 4.41
2193 2305 7.716799 AACATTACATAAATCCTTCCTGCAA 57.283 32.000 0.00 0.00 0.00 4.08
2195 2307 6.891908 ACATTACATAAATCCTTCCTGCAACT 59.108 34.615 0.00 0.00 0.00 3.16
2196 2308 7.397192 ACATTACATAAATCCTTCCTGCAACTT 59.603 33.333 0.00 0.00 0.00 2.66
2197 2309 7.775053 TTACATAAATCCTTCCTGCAACTTT 57.225 32.000 0.00 0.00 0.00 2.66
2199 2311 7.066307 ACATAAATCCTTCCTGCAACTTTTT 57.934 32.000 0.00 0.00 0.00 1.94
2201 2313 8.646900 ACATAAATCCTTCCTGCAACTTTTTAA 58.353 29.630 0.00 0.00 0.00 1.52
2202 2314 9.657419 CATAAATCCTTCCTGCAACTTTTTAAT 57.343 29.630 0.00 0.00 0.00 1.40
2288 2400 8.954950 TTTCATTGTGATTGTAATTGTTTGGT 57.045 26.923 0.00 0.00 0.00 3.67
2290 2402 8.586570 TCATTGTGATTGTAATTGTTTGGTTC 57.413 30.769 0.00 0.00 0.00 3.62
2291 2403 8.200120 TCATTGTGATTGTAATTGTTTGGTTCA 58.800 29.630 0.00 0.00 0.00 3.18
2292 2404 8.824781 CATTGTGATTGTAATTGTTTGGTTCAA 58.175 29.630 0.00 0.00 0.00 2.69
2293 2405 8.777865 TTGTGATTGTAATTGTTTGGTTCAAA 57.222 26.923 0.00 0.00 0.00 2.69
2327 2439 9.860898 AAAGTAATATTCTGTTTTCCATTGCTC 57.139 29.630 0.00 0.00 0.00 4.26
2328 2440 8.814038 AGTAATATTCTGTTTTCCATTGCTCT 57.186 30.769 0.00 0.00 0.00 4.09
2329 2441 9.905713 AGTAATATTCTGTTTTCCATTGCTCTA 57.094 29.630 0.00 0.00 0.00 2.43
2330 2442 9.937175 GTAATATTCTGTTTTCCATTGCTCTAC 57.063 33.333 0.00 0.00 0.00 2.59
2331 2443 8.579850 AATATTCTGTTTTCCATTGCTCTACA 57.420 30.769 0.00 0.00 0.00 2.74
2332 2444 5.689383 TTCTGTTTTCCATTGCTCTACAC 57.311 39.130 0.00 0.00 0.00 2.90
2333 2445 4.713553 TCTGTTTTCCATTGCTCTACACA 58.286 39.130 0.00 0.00 0.00 3.72
2334 2446 5.129634 TCTGTTTTCCATTGCTCTACACAA 58.870 37.500 0.00 0.00 0.00 3.33
2335 2447 5.592282 TCTGTTTTCCATTGCTCTACACAAA 59.408 36.000 0.00 0.00 0.00 2.83
2336 2448 6.096141 TCTGTTTTCCATTGCTCTACACAAAA 59.904 34.615 0.00 0.00 0.00 2.44
2337 2449 6.272318 TGTTTTCCATTGCTCTACACAAAAG 58.728 36.000 0.00 0.00 0.00 2.27
2338 2450 6.127479 TGTTTTCCATTGCTCTACACAAAAGT 60.127 34.615 0.00 0.00 0.00 2.66
2339 2451 5.437289 TTCCATTGCTCTACACAAAAGTG 57.563 39.130 0.00 0.00 0.00 3.16
2340 2452 4.460263 TCCATTGCTCTACACAAAAGTGT 58.540 39.130 6.50 6.50 41.00 3.55
2341 2453 4.887071 TCCATTGCTCTACACAAAAGTGTT 59.113 37.500 6.57 0.00 38.64 3.32
2342 2454 4.977963 CCATTGCTCTACACAAAAGTGTTG 59.022 41.667 6.57 5.30 38.64 3.33
2343 2455 5.221028 CCATTGCTCTACACAAAAGTGTTGA 60.221 40.000 6.57 9.29 38.64 3.18
2344 2456 6.441274 CATTGCTCTACACAAAAGTGTTGAT 58.559 36.000 11.94 0.00 38.13 2.57
2345 2457 5.422666 TGCTCTACACAAAAGTGTTGATG 57.577 39.130 11.94 8.45 38.13 3.07
2346 2458 5.122519 TGCTCTACACAAAAGTGTTGATGA 58.877 37.500 11.94 4.25 38.13 2.92
2347 2459 5.764686 TGCTCTACACAAAAGTGTTGATGAT 59.235 36.000 11.94 0.00 38.13 2.45
2348 2460 6.262944 TGCTCTACACAAAAGTGTTGATGATT 59.737 34.615 11.94 0.00 38.13 2.57
2349 2461 6.798959 GCTCTACACAAAAGTGTTGATGATTC 59.201 38.462 11.94 0.00 38.13 2.52
2350 2462 7.308229 GCTCTACACAAAAGTGTTGATGATTCT 60.308 37.037 11.94 0.00 38.13 2.40
2351 2463 9.208022 CTCTACACAAAAGTGTTGATGATTCTA 57.792 33.333 11.94 0.00 38.13 2.10
2352 2464 9.208022 TCTACACAAAAGTGTTGATGATTCTAG 57.792 33.333 6.57 0.00 38.64 2.43
2353 2465 9.208022 CTACACAAAAGTGTTGATGATTCTAGA 57.792 33.333 6.57 0.00 38.64 2.43
2354 2466 8.450578 ACACAAAAGTGTTGATGATTCTAGAA 57.549 30.769 7.82 7.82 35.07 2.10
2355 2467 8.345565 ACACAAAAGTGTTGATGATTCTAGAAC 58.654 33.333 7.48 2.86 35.07 3.01
2356 2468 7.805071 CACAAAAGTGTTGATGATTCTAGAACC 59.195 37.037 7.48 0.00 35.07 3.62
2357 2469 7.040409 ACAAAAGTGTTGATGATTCTAGAACCC 60.040 37.037 7.48 3.58 32.58 4.11
2358 2470 6.380079 AAGTGTTGATGATTCTAGAACCCT 57.620 37.500 7.48 0.00 0.00 4.34
2359 2471 5.983540 AGTGTTGATGATTCTAGAACCCTC 58.016 41.667 7.48 0.74 0.00 4.30
2360 2472 5.485353 AGTGTTGATGATTCTAGAACCCTCA 59.515 40.000 7.48 8.49 0.00 3.86
2361 2473 6.013379 AGTGTTGATGATTCTAGAACCCTCAA 60.013 38.462 12.19 12.19 0.00 3.02
2362 2474 6.655003 GTGTTGATGATTCTAGAACCCTCAAA 59.345 38.462 16.51 7.16 0.00 2.69
2363 2475 7.337942 GTGTTGATGATTCTAGAACCCTCAAAT 59.662 37.037 16.51 0.88 0.00 2.32
2364 2476 7.337689 TGTTGATGATTCTAGAACCCTCAAATG 59.662 37.037 16.51 0.00 0.00 2.32
2365 2477 7.199167 TGATGATTCTAGAACCCTCAAATGA 57.801 36.000 7.48 0.00 0.00 2.57
2366 2478 7.809238 TGATGATTCTAGAACCCTCAAATGAT 58.191 34.615 7.48 0.00 0.00 2.45
2367 2479 7.935755 TGATGATTCTAGAACCCTCAAATGATC 59.064 37.037 7.48 3.26 0.00 2.92
2368 2480 6.283694 TGATTCTAGAACCCTCAAATGATCG 58.716 40.000 7.48 0.00 0.00 3.69
2369 2481 5.932619 TTCTAGAACCCTCAAATGATCGA 57.067 39.130 0.00 0.00 0.00 3.59
2370 2482 5.521906 TCTAGAACCCTCAAATGATCGAG 57.478 43.478 0.00 0.00 0.00 4.04
2371 2483 2.911484 AGAACCCTCAAATGATCGAGC 58.089 47.619 0.00 0.00 0.00 5.03
2372 2484 2.237143 AGAACCCTCAAATGATCGAGCA 59.763 45.455 5.53 5.53 0.00 4.26
2373 2485 2.029838 ACCCTCAAATGATCGAGCAC 57.970 50.000 5.03 0.00 0.00 4.40
2374 2486 1.278985 ACCCTCAAATGATCGAGCACA 59.721 47.619 5.03 0.00 0.00 4.57
2375 2487 2.290260 ACCCTCAAATGATCGAGCACAA 60.290 45.455 5.03 0.00 0.00 3.33
2376 2488 2.353889 CCCTCAAATGATCGAGCACAAG 59.646 50.000 5.03 0.81 0.00 3.16
2377 2489 2.223203 CCTCAAATGATCGAGCACAAGC 60.223 50.000 5.03 0.00 42.56 4.01
2392 2504 5.314923 GCACAAGCTCTAATTTCAATGGA 57.685 39.130 0.00 0.00 37.91 3.41
2393 2505 5.713025 GCACAAGCTCTAATTTCAATGGAA 58.287 37.500 0.00 0.00 37.91 3.53
2394 2506 6.335777 GCACAAGCTCTAATTTCAATGGAAT 58.664 36.000 0.00 0.00 37.91 3.01
2395 2507 6.255020 GCACAAGCTCTAATTTCAATGGAATG 59.745 38.462 0.00 0.00 37.91 2.67
2396 2508 6.755141 CACAAGCTCTAATTTCAATGGAATGG 59.245 38.462 0.00 0.00 31.93 3.16
2397 2509 6.438425 ACAAGCTCTAATTTCAATGGAATGGT 59.562 34.615 0.00 0.00 31.93 3.55
2398 2510 6.461110 AGCTCTAATTTCAATGGAATGGTG 57.539 37.500 0.00 0.00 31.93 4.17
2399 2511 6.189859 AGCTCTAATTTCAATGGAATGGTGA 58.810 36.000 0.00 0.00 31.93 4.02
2400 2512 6.320672 AGCTCTAATTTCAATGGAATGGTGAG 59.679 38.462 0.00 0.00 31.93 3.51
2401 2513 6.096001 GCTCTAATTTCAATGGAATGGTGAGT 59.904 38.462 10.73 0.00 31.93 3.41
2402 2514 7.283127 GCTCTAATTTCAATGGAATGGTGAGTA 59.717 37.037 10.73 0.00 31.93 2.59
2403 2515 8.506168 TCTAATTTCAATGGAATGGTGAGTAC 57.494 34.615 0.00 0.00 31.93 2.73
2404 2516 8.328758 TCTAATTTCAATGGAATGGTGAGTACT 58.671 33.333 0.00 0.00 31.93 2.73
2405 2517 6.764308 ATTTCAATGGAATGGTGAGTACTG 57.236 37.500 0.00 0.00 31.93 2.74
2406 2518 4.220693 TCAATGGAATGGTGAGTACTGG 57.779 45.455 0.00 0.00 0.00 4.00
2407 2519 3.843619 TCAATGGAATGGTGAGTACTGGA 59.156 43.478 0.00 0.00 0.00 3.86
2408 2520 4.474651 TCAATGGAATGGTGAGTACTGGAT 59.525 41.667 0.00 0.00 0.00 3.41
2409 2521 3.912496 TGGAATGGTGAGTACTGGATG 57.088 47.619 0.00 0.00 0.00 3.51
2410 2522 3.181329 TGGAATGGTGAGTACTGGATGT 58.819 45.455 0.00 0.00 0.00 3.06
2411 2523 3.197766 TGGAATGGTGAGTACTGGATGTC 59.802 47.826 0.00 0.00 0.00 3.06
2412 2524 3.452627 GGAATGGTGAGTACTGGATGTCT 59.547 47.826 0.00 0.00 0.00 3.41
2413 2525 4.442192 GGAATGGTGAGTACTGGATGTCTC 60.442 50.000 0.00 0.00 0.00 3.36
2414 2526 2.092323 TGGTGAGTACTGGATGTCTCG 58.908 52.381 0.00 0.00 0.00 4.04
2415 2527 1.202313 GGTGAGTACTGGATGTCTCGC 60.202 57.143 0.00 0.00 35.07 5.03
2416 2528 1.472878 GTGAGTACTGGATGTCTCGCA 59.527 52.381 0.00 0.00 35.47 5.10
2417 2529 1.472878 TGAGTACTGGATGTCTCGCAC 59.527 52.381 0.00 0.00 0.00 5.34
2418 2530 0.818296 AGTACTGGATGTCTCGCACC 59.182 55.000 0.00 0.00 0.00 5.01
2419 2531 0.179108 GTACTGGATGTCTCGCACCC 60.179 60.000 0.00 0.00 0.00 4.61
2420 2532 1.327690 TACTGGATGTCTCGCACCCC 61.328 60.000 0.00 0.00 0.00 4.95
2421 2533 2.284625 TGGATGTCTCGCACCCCT 60.285 61.111 0.00 0.00 0.00 4.79
2422 2534 1.001120 TGGATGTCTCGCACCCCTA 59.999 57.895 0.00 0.00 0.00 3.53
2423 2535 1.043116 TGGATGTCTCGCACCCCTAG 61.043 60.000 0.00 0.00 0.00 3.02
2424 2536 1.068250 GATGTCTCGCACCCCTAGC 59.932 63.158 0.00 0.00 0.00 3.42
2425 2537 1.381872 ATGTCTCGCACCCCTAGCT 60.382 57.895 0.00 0.00 0.00 3.32
2426 2538 0.978146 ATGTCTCGCACCCCTAGCTT 60.978 55.000 0.00 0.00 0.00 3.74
2427 2539 0.323999 TGTCTCGCACCCCTAGCTTA 60.324 55.000 0.00 0.00 0.00 3.09
2428 2540 0.386113 GTCTCGCACCCCTAGCTTAG 59.614 60.000 0.00 0.00 0.00 2.18
2429 2541 0.033405 TCTCGCACCCCTAGCTTAGT 60.033 55.000 0.00 0.00 0.00 2.24
2430 2542 1.213678 TCTCGCACCCCTAGCTTAGTA 59.786 52.381 0.00 0.00 0.00 1.82
2431 2543 1.337387 CTCGCACCCCTAGCTTAGTAC 59.663 57.143 0.00 0.00 0.00 2.73
2432 2544 0.030369 CGCACCCCTAGCTTAGTACG 59.970 60.000 0.00 0.00 0.00 3.67
2433 2545 1.109609 GCACCCCTAGCTTAGTACGT 58.890 55.000 0.00 0.00 0.00 3.57
2434 2546 1.202382 GCACCCCTAGCTTAGTACGTG 60.202 57.143 0.00 0.00 0.00 4.49
2435 2547 1.109609 ACCCCTAGCTTAGTACGTGC 58.890 55.000 0.00 0.00 0.00 5.34
2436 2548 1.108776 CCCCTAGCTTAGTACGTGCA 58.891 55.000 6.38 0.00 0.00 4.57
2437 2549 1.067212 CCCCTAGCTTAGTACGTGCAG 59.933 57.143 6.38 0.00 0.00 4.41
2438 2550 2.022195 CCCTAGCTTAGTACGTGCAGA 58.978 52.381 6.38 0.00 0.00 4.26
2439 2551 2.623889 CCCTAGCTTAGTACGTGCAGAT 59.376 50.000 6.38 0.00 0.00 2.90
2440 2552 3.819337 CCCTAGCTTAGTACGTGCAGATA 59.181 47.826 6.38 0.00 0.00 1.98
2441 2553 4.320348 CCCTAGCTTAGTACGTGCAGATAC 60.320 50.000 6.38 0.00 0.00 2.24
2442 2554 4.515944 CCTAGCTTAGTACGTGCAGATACT 59.484 45.833 6.38 13.04 35.76 2.12
2443 2555 5.699915 CCTAGCTTAGTACGTGCAGATACTA 59.300 44.000 6.38 11.37 33.65 1.82
2444 2556 5.676532 AGCTTAGTACGTGCAGATACTAG 57.323 43.478 6.38 10.72 35.76 2.57
2445 2557 4.023878 AGCTTAGTACGTGCAGATACTAGC 60.024 45.833 18.77 18.77 35.76 3.42
2446 2558 4.023878 GCTTAGTACGTGCAGATACTAGCT 60.024 45.833 6.38 0.00 35.76 3.32
2447 2559 3.972950 AGTACGTGCAGATACTAGCTG 57.027 47.619 6.38 0.00 36.47 4.24
2448 2560 2.619177 AGTACGTGCAGATACTAGCTGG 59.381 50.000 6.38 0.00 34.00 4.85
2449 2561 0.747255 ACGTGCAGATACTAGCTGGG 59.253 55.000 0.85 0.00 34.00 4.45
2450 2562 1.032794 CGTGCAGATACTAGCTGGGA 58.967 55.000 0.85 0.00 34.00 4.37
2451 2563 1.409064 CGTGCAGATACTAGCTGGGAA 59.591 52.381 0.85 0.00 34.00 3.97
2452 2564 2.544694 CGTGCAGATACTAGCTGGGAAG 60.545 54.545 0.85 0.00 34.00 3.46
2453 2565 2.432510 GTGCAGATACTAGCTGGGAAGT 59.567 50.000 0.85 0.00 34.00 3.01
2454 2566 2.695666 TGCAGATACTAGCTGGGAAGTC 59.304 50.000 0.85 0.00 34.00 3.01
2455 2567 2.036604 GCAGATACTAGCTGGGAAGTCC 59.963 54.545 0.85 0.00 34.00 3.85
2466 2578 3.884226 GGAAGTCCCCCTGCTAAAG 57.116 57.895 0.00 0.00 0.00 1.85
2467 2579 1.286248 GGAAGTCCCCCTGCTAAAGA 58.714 55.000 0.00 0.00 0.00 2.52
2468 2580 1.633945 GGAAGTCCCCCTGCTAAAGAA 59.366 52.381 0.00 0.00 0.00 2.52
2469 2581 2.041216 GGAAGTCCCCCTGCTAAAGAAA 59.959 50.000 0.00 0.00 0.00 2.52
2470 2582 2.881111 AGTCCCCCTGCTAAAGAAAC 57.119 50.000 0.00 0.00 0.00 2.78
2471 2583 2.349445 AGTCCCCCTGCTAAAGAAACT 58.651 47.619 0.00 0.00 0.00 2.66
2472 2584 2.716969 AGTCCCCCTGCTAAAGAAACTT 59.283 45.455 0.00 0.00 0.00 2.66
2473 2585 3.914435 AGTCCCCCTGCTAAAGAAACTTA 59.086 43.478 0.00 0.00 0.00 2.24
2474 2586 4.540502 AGTCCCCCTGCTAAAGAAACTTAT 59.459 41.667 0.00 0.00 0.00 1.73
2483 2595 7.552687 CCTGCTAAAGAAACTTATGTATGGTGA 59.447 37.037 0.00 0.00 0.00 4.02
2500 2612 9.555727 TGTATGGTGATTAGCTAAATTAGGTTC 57.444 33.333 10.85 3.78 37.70 3.62
2501 2613 7.730364 ATGGTGATTAGCTAAATTAGGTTCG 57.270 36.000 10.85 0.00 37.70 3.95
2515 2628 1.120530 GGTTCGAGAGGGGCTAATGA 58.879 55.000 0.00 0.00 0.00 2.57
2525 2638 4.133078 GAGGGGCTAATGATTCTCTGTTG 58.867 47.826 0.00 0.00 0.00 3.33
2526 2639 2.620585 GGGGCTAATGATTCTCTGTTGC 59.379 50.000 0.00 0.00 0.00 4.17
2544 2657 3.361443 CGTAGCTTGCCGTGAAAAC 57.639 52.632 0.00 0.00 0.00 2.43
2549 2662 2.294074 AGCTTGCCGTGAAAACTGTAA 58.706 42.857 0.00 0.00 0.00 2.41
2561 2703 8.450964 CCGTGAAAACTGTAAAATCATATGAGT 58.549 33.333 11.78 5.59 0.00 3.41
2638 2781 8.463930 TCTCTCAATTTGTGGTGTCTTAATTT 57.536 30.769 0.00 0.00 0.00 1.82
2639 2782 8.352201 TCTCTCAATTTGTGGTGTCTTAATTTG 58.648 33.333 0.00 0.00 0.00 2.32
2695 2840 7.791029 TGTGCTATTGTCTAATATTGGAGTGA 58.209 34.615 1.12 0.00 0.00 3.41
2711 4063 6.596309 TGGAGTGATTATGTAGATAGCAGG 57.404 41.667 0.00 0.00 0.00 4.85
2734 4086 1.200020 CGGACCCAGAGCAAAAATGAC 59.800 52.381 0.00 0.00 0.00 3.06
2739 4091 0.109132 CAGAGCAAAAATGACCCGGC 60.109 55.000 0.00 0.00 0.00 6.13
2765 4117 3.055613 CATGTACACCATGCACGATTG 57.944 47.619 0.00 0.00 44.21 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.094118 TGGCGTACATATATATGCACTCTGTTA 60.094 37.037 20.46 2.67 38.60 2.41
1 2 6.100004 GGCGTACATATATATGCACTCTGTT 58.900 40.000 20.46 3.55 38.60 3.16
3 4 5.650543 TGGCGTACATATATATGCACTCTG 58.349 41.667 20.46 8.39 38.60 3.35
6 7 5.661056 ACTGGCGTACATATATATGCACT 57.339 39.130 20.46 6.17 38.60 4.40
7 8 5.867174 TCAACTGGCGTACATATATATGCAC 59.133 40.000 20.46 17.05 38.60 4.57
8 9 6.031751 TCAACTGGCGTACATATATATGCA 57.968 37.500 20.46 7.07 38.60 3.96
9 10 6.100004 ACTCAACTGGCGTACATATATATGC 58.900 40.000 20.46 8.18 37.19 3.14
19 20 1.067142 TGATGGACTCAACTGGCGTAC 60.067 52.381 0.00 0.00 0.00 3.67
22 23 1.742761 ATTGATGGACTCAACTGGCG 58.257 50.000 0.00 0.00 46.37 5.69
24 25 5.707298 ACAAACTATTGATGGACTCAACTGG 59.293 40.000 0.00 0.00 46.37 4.00
35 36 8.839947 TCGCATTTAATCACAAACTATTGATG 57.160 30.769 0.00 0.00 38.94 3.07
43 44 7.504922 TTTAGCATCGCATTTAATCACAAAC 57.495 32.000 0.00 0.00 0.00 2.93
119 120 2.086869 ACAACAGCTCACATGGTATGC 58.913 47.619 0.00 0.00 0.00 3.14
127 128 1.441311 TCGCAGACAACAGCTCACA 59.559 52.632 0.00 0.00 0.00 3.58
195 196 2.563427 GCTCTTCTTGCGTTGGCC 59.437 61.111 0.00 0.00 38.85 5.36
209 210 2.952978 TCCTATGTCCTTCTCTTCGCTC 59.047 50.000 0.00 0.00 0.00 5.03
210 211 3.019799 TCCTATGTCCTTCTCTTCGCT 57.980 47.619 0.00 0.00 0.00 4.93
213 214 5.205056 TCCTCTTCCTATGTCCTTCTCTTC 58.795 45.833 0.00 0.00 0.00 2.87
224 225 3.137176 TCAAATGGCCTCCTCTTCCTATG 59.863 47.826 3.32 0.00 0.00 2.23
236 237 4.129380 GCAAAAAGAAACTCAAATGGCCT 58.871 39.130 3.32 0.00 0.00 5.19
251 252 4.925068 ACACAGCTACTTTCAGCAAAAAG 58.075 39.130 8.75 8.75 44.35 2.27
252 253 4.981806 ACACAGCTACTTTCAGCAAAAA 57.018 36.364 0.00 0.00 44.35 1.94
253 254 4.981806 AACACAGCTACTTTCAGCAAAA 57.018 36.364 0.00 0.00 44.35 2.44
254 255 4.439974 CCAAACACAGCTACTTTCAGCAAA 60.440 41.667 0.00 0.00 44.35 3.68
265 266 1.225855 CGAAGCACCAAACACAGCTA 58.774 50.000 0.00 0.00 36.07 3.32
267 268 0.100503 AACGAAGCACCAAACACAGC 59.899 50.000 0.00 0.00 0.00 4.40
268 269 1.132262 ACAACGAAGCACCAAACACAG 59.868 47.619 0.00 0.00 0.00 3.66
277 279 1.544686 CCAACAACACAACGAAGCAC 58.455 50.000 0.00 0.00 0.00 4.40
294 296 1.152355 CCTTCCCAAAGCCAACCCA 60.152 57.895 0.00 0.00 0.00 4.51
295 297 2.583441 GCCTTCCCAAAGCCAACCC 61.583 63.158 0.00 0.00 0.00 4.11
330 333 8.406297 GTTTCACAAAATCACCTACTCTTTCTT 58.594 33.333 0.00 0.00 0.00 2.52
343 346 7.953158 TTTTGTTGACTGTTTCACAAAATCA 57.047 28.000 15.84 2.61 38.67 2.57
371 374 3.507786 GCCATGCATGCATACACATATG 58.492 45.455 31.73 18.47 41.16 1.78
384 387 3.162666 CCATTTCTATCTGGCCATGCAT 58.837 45.455 5.51 0.93 0.00 3.96
385 388 2.091720 ACCATTTCTATCTGGCCATGCA 60.092 45.455 5.51 0.00 35.88 3.96
386 389 2.555757 GACCATTTCTATCTGGCCATGC 59.444 50.000 5.51 0.00 35.88 4.06
387 390 3.824133 TGACCATTTCTATCTGGCCATG 58.176 45.455 5.51 0.00 35.88 3.66
412 415 9.574516 CTACACCTGCTCCCTTAATTAAATTAT 57.425 33.333 0.00 0.00 0.00 1.28
420 423 3.452627 CACTCTACACCTGCTCCCTTAAT 59.547 47.826 0.00 0.00 0.00 1.40
425 428 1.219393 GCACTCTACACCTGCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
426 429 1.153745 CGCACTCTACACCTGCTCC 60.154 63.158 0.00 0.00 0.00 4.70
467 470 6.502136 AAAGAGACTTCCGAAAATTGATCC 57.498 37.500 0.00 0.00 0.00 3.36
468 471 7.148623 ACGTAAAGAGACTTCCGAAAATTGATC 60.149 37.037 0.00 0.00 0.00 2.92
474 477 5.865552 CCATACGTAAAGAGACTTCCGAAAA 59.134 40.000 0.00 0.00 0.00 2.29
479 482 5.069501 ACACCATACGTAAAGAGACTTCC 57.930 43.478 0.00 0.00 0.00 3.46
485 488 7.226325 AGCTAGTAGTACACCATACGTAAAGAG 59.774 40.741 0.00 0.00 0.00 2.85
491 494 6.586344 TCTAAGCTAGTAGTACACCATACGT 58.414 40.000 2.52 0.00 0.00 3.57
492 495 7.488187 TTCTAAGCTAGTAGTACACCATACG 57.512 40.000 2.52 0.00 0.00 3.06
512 515 6.152932 AGACAACGTCAGGTTAGTTTTCTA 57.847 37.500 0.00 0.00 36.49 2.10
520 523 2.696707 AGACCAAGACAACGTCAGGTTA 59.303 45.455 11.12 0.00 41.08 2.85
531 534 1.262417 TATCACGCCAGACCAAGACA 58.738 50.000 0.00 0.00 0.00 3.41
573 578 6.401474 GCATGACAGTGACACAGTATAAAGTG 60.401 42.308 8.59 4.69 41.40 3.16
574 579 5.639506 GCATGACAGTGACACAGTATAAAGT 59.360 40.000 8.59 0.00 0.00 2.66
579 584 3.683365 TGCATGACAGTGACACAGTAT 57.317 42.857 8.59 0.00 0.00 2.12
580 585 3.006752 TCATGCATGACAGTGACACAGTA 59.993 43.478 25.42 0.00 0.00 2.74
583 588 2.547299 TCATGCATGACAGTGACACA 57.453 45.000 25.42 0.00 0.00 3.72
641 651 5.061179 AGGTTACGCCATATATTCAACACC 58.939 41.667 0.00 0.00 40.61 4.16
642 652 6.259167 TCAAGGTTACGCCATATATTCAACAC 59.741 38.462 0.00 0.00 40.61 3.32
643 653 6.350103 TCAAGGTTACGCCATATATTCAACA 58.650 36.000 0.00 0.00 40.61 3.33
662 672 4.584325 AGATCAACTAGCTAGCTCTCAAGG 59.416 45.833 23.26 7.57 0.00 3.61
677 687 7.175293 CGACTAGGTTATTAGGCTAGATCAACT 59.825 40.741 0.00 0.00 0.00 3.16
678 688 7.306953 CGACTAGGTTATTAGGCTAGATCAAC 58.693 42.308 0.00 0.00 0.00 3.18
679 689 6.072064 GCGACTAGGTTATTAGGCTAGATCAA 60.072 42.308 0.00 0.00 0.00 2.57
680 690 5.415077 GCGACTAGGTTATTAGGCTAGATCA 59.585 44.000 0.00 0.00 0.00 2.92
681 691 5.163632 GGCGACTAGGTTATTAGGCTAGATC 60.164 48.000 0.00 0.00 0.00 2.75
683 693 4.077822 GGCGACTAGGTTATTAGGCTAGA 58.922 47.826 0.00 0.00 0.00 2.43
685 695 4.077822 GAGGCGACTAGGTTATTAGGCTA 58.922 47.826 0.00 0.00 44.43 3.93
686 696 2.892215 GAGGCGACTAGGTTATTAGGCT 59.108 50.000 0.00 0.00 44.43 4.58
687 697 2.626743 TGAGGCGACTAGGTTATTAGGC 59.373 50.000 0.00 0.00 44.43 3.93
688 698 4.810790 CATGAGGCGACTAGGTTATTAGG 58.189 47.826 0.00 0.00 44.43 2.69
689 699 4.238514 GCATGAGGCGACTAGGTTATTAG 58.761 47.826 0.00 0.00 44.43 1.73
690 700 4.252971 GCATGAGGCGACTAGGTTATTA 57.747 45.455 0.00 0.00 44.43 0.98
691 701 3.113260 GCATGAGGCGACTAGGTTATT 57.887 47.619 0.00 0.00 44.43 1.40
692 702 2.821991 GCATGAGGCGACTAGGTTAT 57.178 50.000 0.00 0.00 44.43 1.89
712 722 2.158871 ACTCTCGGTAGCAACAAACCAA 60.159 45.455 0.00 0.00 35.35 3.67
729 743 8.908786 TGCATGCTAGCTAATTAATTAACTCT 57.091 30.769 20.33 10.47 34.99 3.24
786 815 6.307077 TGTCTAATTAACATGTCTTGACGACG 59.693 38.462 0.00 0.00 45.87 5.12
787 816 7.445836 GTGTCTAATTAACATGTCTTGACGAC 58.554 38.462 0.00 3.73 43.14 4.34
798 827 4.155280 GCAACCCACGTGTCTAATTAACAT 59.845 41.667 15.65 0.00 0.00 2.71
809 838 0.107410 TTGAAGAGCAACCCACGTGT 60.107 50.000 15.65 0.00 0.00 4.49
825 855 5.625426 GCACTAGATTGACATGGTCTCTTGA 60.625 44.000 0.00 0.00 33.15 3.02
849 882 2.533266 ATCCAAGGCGTACATAGCAG 57.467 50.000 0.00 0.00 36.08 4.24
873 907 1.598130 AGCTGACCGAGTTGCCAAC 60.598 57.895 0.00 0.00 0.00 3.77
875 909 2.031012 CAGCTGACCGAGTTGCCA 59.969 61.111 8.42 0.00 0.00 4.92
878 912 2.675056 GCTGCAGCTGACCGAGTTG 61.675 63.158 31.33 0.00 38.21 3.16
879 913 2.358003 GCTGCAGCTGACCGAGTT 60.358 61.111 31.33 0.00 38.21 3.01
880 914 4.385405 GGCTGCAGCTGACCGAGT 62.385 66.667 35.82 0.00 41.70 4.18
882 916 3.889134 CTTGGCTGCAGCTGACCGA 62.889 63.158 35.82 18.90 41.70 4.69
883 917 3.429141 CTTGGCTGCAGCTGACCG 61.429 66.667 35.82 17.16 41.70 4.79
884 918 3.745803 GCTTGGCTGCAGCTGACC 61.746 66.667 35.82 20.88 41.70 4.02
885 919 2.672307 AGCTTGGCTGCAGCTGAC 60.672 61.111 35.82 21.24 46.25 3.51
912 950 2.812591 GCTGATTCTGTGGCCATCTATG 59.187 50.000 9.72 0.00 0.00 2.23
913 951 2.709934 AGCTGATTCTGTGGCCATCTAT 59.290 45.455 9.72 0.00 0.00 1.98
914 952 2.121948 AGCTGATTCTGTGGCCATCTA 58.878 47.619 9.72 0.00 0.00 1.98
916 954 2.216898 GTAGCTGATTCTGTGGCCATC 58.783 52.381 9.72 1.58 0.00 3.51
940 991 3.808728 AGCTAGCTTTGTGTGTTGAGAA 58.191 40.909 12.68 0.00 0.00 2.87
941 992 3.475566 AGCTAGCTTTGTGTGTTGAGA 57.524 42.857 12.68 0.00 0.00 3.27
963 1014 2.981859 ATGGACGTTGTCTATGGGTC 57.018 50.000 0.00 0.00 32.68 4.46
964 1015 3.263425 AGAAATGGACGTTGTCTATGGGT 59.737 43.478 0.00 0.00 34.13 4.51
965 1016 3.871594 GAGAAATGGACGTTGTCTATGGG 59.128 47.826 0.00 0.00 34.13 4.00
966 1017 3.871594 GGAGAAATGGACGTTGTCTATGG 59.128 47.826 0.00 0.00 34.13 2.74
967 1018 3.551890 CGGAGAAATGGACGTTGTCTATG 59.448 47.826 0.00 0.00 34.13 2.23
968 1019 3.446161 TCGGAGAAATGGACGTTGTCTAT 59.554 43.478 0.00 0.00 35.32 1.98
975 1026 3.446161 TGTTCTATCGGAGAAATGGACGT 59.554 43.478 0.00 0.00 45.90 4.34
977 1028 6.737254 TTTTGTTCTATCGGAGAAATGGAC 57.263 37.500 2.73 0.00 45.90 4.02
986 1037 3.199946 AGAGGCCATTTTGTTCTATCGGA 59.800 43.478 5.01 0.00 0.00 4.55
990 1041 6.012745 AGACAAAGAGGCCATTTTGTTCTAT 58.987 36.000 27.81 16.79 44.88 1.98
991 1042 5.385198 AGACAAAGAGGCCATTTTGTTCTA 58.615 37.500 27.81 0.00 44.88 2.10
995 1046 3.321968 GGAAGACAAAGAGGCCATTTTGT 59.678 43.478 27.62 27.62 46.83 2.83
996 1047 3.306294 GGGAAGACAAAGAGGCCATTTTG 60.306 47.826 22.97 22.97 39.55 2.44
1008 1059 0.112412 GGAAGCAGGGGGAAGACAAA 59.888 55.000 0.00 0.00 0.00 2.83
1011 1062 0.034960 GAAGGAAGCAGGGGGAAGAC 60.035 60.000 0.00 0.00 0.00 3.01
1018 1069 1.627834 AGTGAAGAGAAGGAAGCAGGG 59.372 52.381 0.00 0.00 0.00 4.45
1053 1104 2.009042 GCTAAAGCGTGCCATGAGACT 61.009 52.381 0.00 0.00 0.00 3.24
1095 1146 1.733399 GTCCGCGACACAGAAGTCC 60.733 63.158 8.23 0.00 35.07 3.85
1144 1195 6.446781 ACTCAAATATGCAGTGATGAAAGG 57.553 37.500 0.00 0.00 0.00 3.11
1203 1256 7.038659 TGAATACACAAACAAGGAAAAAGTGG 58.961 34.615 0.00 0.00 0.00 4.00
1346 1419 1.164041 CGTTCGACCCAACCTTGCTT 61.164 55.000 0.00 0.00 0.00 3.91
1361 1434 4.303586 GACGTTAATCAAGGTCACGTTC 57.696 45.455 0.00 0.00 44.96 3.95
1496 1569 1.093159 CGTAGAGCGTACCCTCAAGT 58.907 55.000 10.10 0.00 34.26 3.16
1508 1581 0.388134 TGACGAAGCCAACGTAGAGC 60.388 55.000 0.00 0.00 43.97 4.09
1724 1797 2.013563 GCCTTGGCGAGAACATCATCA 61.014 52.381 2.43 0.00 0.00 3.07
1935 2011 8.635765 TGTGAGCAAAGGAAACTAGAATAATT 57.364 30.769 0.00 0.00 42.68 1.40
1940 2016 5.189928 TGTTGTGAGCAAAGGAAACTAGAA 58.810 37.500 0.00 0.00 42.68 2.10
1945 2021 4.110036 ACTTGTTGTGAGCAAAGGAAAC 57.890 40.909 0.00 0.00 36.22 2.78
1988 2099 5.462068 TCCGACATGCAGTAATCGAAATAAG 59.538 40.000 11.82 0.00 36.70 1.73
1991 2102 3.792401 TCCGACATGCAGTAATCGAAAT 58.208 40.909 11.82 0.00 36.70 2.17
1995 2106 4.738124 AGATATCCGACATGCAGTAATCG 58.262 43.478 0.00 0.00 0.00 3.34
2000 2111 1.336332 GCGAGATATCCGACATGCAGT 60.336 52.381 15.11 0.00 0.00 4.40
2014 2125 0.103208 CTAAGCAAGGGTCGCGAGAT 59.897 55.000 10.24 0.00 45.19 2.75
2027 2138 6.666678 AGTACCGGCCTATATATACTAAGCA 58.333 40.000 0.00 0.00 0.00 3.91
2038 2149 3.184628 TCCTAGCTAGTACCGGCCTATA 58.815 50.000 19.31 0.00 0.00 1.31
2039 2150 1.991070 TCCTAGCTAGTACCGGCCTAT 59.009 52.381 19.31 0.00 0.00 2.57
2040 2151 1.438469 TCCTAGCTAGTACCGGCCTA 58.562 55.000 19.31 0.51 0.00 3.93
2041 2152 0.554792 TTCCTAGCTAGTACCGGCCT 59.445 55.000 19.31 0.00 0.00 5.19
2047 2158 4.557097 GCAACGATCCTTCCTAGCTAGTAC 60.557 50.000 19.31 2.39 0.00 2.73
2056 2167 3.695830 TGTTTAGCAACGATCCTTCCT 57.304 42.857 0.00 0.00 35.40 3.36
2066 2178 7.359181 GCACCATTCATAAGTTTGTTTAGCAAC 60.359 37.037 0.00 0.00 36.72 4.17
2075 2187 6.199937 AGCTAAGCACCATTCATAAGTTTG 57.800 37.500 0.00 0.00 0.00 2.93
2092 2204 6.366332 CCCGTGTAAATCATAGCTTAGCTAAG 59.634 42.308 26.20 26.20 44.62 2.18
2093 2205 6.220930 CCCGTGTAAATCATAGCTTAGCTAA 58.779 40.000 18.34 5.94 44.62 3.09
2094 2206 5.279306 CCCCGTGTAAATCATAGCTTAGCTA 60.279 44.000 16.76 16.76 45.55 3.32
2097 2209 3.746492 GCCCCGTGTAAATCATAGCTTAG 59.254 47.826 0.00 0.00 0.00 2.18
2099 2211 2.172717 AGCCCCGTGTAAATCATAGCTT 59.827 45.455 0.00 0.00 0.00 3.74
2100 2212 1.768870 AGCCCCGTGTAAATCATAGCT 59.231 47.619 0.00 0.00 0.00 3.32
2102 2214 4.695455 CCATTAGCCCCGTGTAAATCATAG 59.305 45.833 0.00 0.00 0.00 2.23
2103 2215 4.103469 ACCATTAGCCCCGTGTAAATCATA 59.897 41.667 0.00 0.00 0.00 2.15
2104 2216 3.117663 ACCATTAGCCCCGTGTAAATCAT 60.118 43.478 0.00 0.00 0.00 2.45
2105 2217 2.240160 ACCATTAGCCCCGTGTAAATCA 59.760 45.455 0.00 0.00 0.00 2.57
2106 2218 2.927028 ACCATTAGCCCCGTGTAAATC 58.073 47.619 0.00 0.00 0.00 2.17
2108 2220 2.306512 AGAACCATTAGCCCCGTGTAAA 59.693 45.455 0.00 0.00 0.00 2.01
2109 2221 1.910671 AGAACCATTAGCCCCGTGTAA 59.089 47.619 0.00 0.00 0.00 2.41
2110 2222 1.483415 GAGAACCATTAGCCCCGTGTA 59.517 52.381 0.00 0.00 0.00 2.90
2111 2223 0.252197 GAGAACCATTAGCCCCGTGT 59.748 55.000 0.00 0.00 0.00 4.49
2112 2224 0.541863 AGAGAACCATTAGCCCCGTG 59.458 55.000 0.00 0.00 0.00 4.94
2113 2225 0.541863 CAGAGAACCATTAGCCCCGT 59.458 55.000 0.00 0.00 0.00 5.28
2114 2226 0.541863 ACAGAGAACCATTAGCCCCG 59.458 55.000 0.00 0.00 0.00 5.73
2115 2227 2.290960 ACAACAGAGAACCATTAGCCCC 60.291 50.000 0.00 0.00 0.00 5.80
2116 2228 3.073274 ACAACAGAGAACCATTAGCCC 57.927 47.619 0.00 0.00 0.00 5.19
2162 2274 9.185680 GGAAGGATTTATGTAATGTTTGTAGGT 57.814 33.333 0.00 0.00 0.00 3.08
2165 2277 8.682710 GCAGGAAGGATTTATGTAATGTTTGTA 58.317 33.333 0.00 0.00 0.00 2.41
2166 2278 7.178274 TGCAGGAAGGATTTATGTAATGTTTGT 59.822 33.333 0.00 0.00 0.00 2.83
2167 2279 7.546358 TGCAGGAAGGATTTATGTAATGTTTG 58.454 34.615 0.00 0.00 0.00 2.93
2171 2283 7.338800 AGTTGCAGGAAGGATTTATGTAATG 57.661 36.000 0.00 0.00 0.00 1.90
2172 2284 7.961326 AAGTTGCAGGAAGGATTTATGTAAT 57.039 32.000 0.00 0.00 0.00 1.89
2173 2285 7.775053 AAAGTTGCAGGAAGGATTTATGTAA 57.225 32.000 0.00 0.00 0.00 2.41
2176 2288 9.657419 ATTAAAAAGTTGCAGGAAGGATTTATG 57.343 29.630 0.00 0.00 0.00 1.90
2262 2374 9.388506 ACCAAACAATTACAATCACAATGAAAA 57.611 25.926 0.00 0.00 0.00 2.29
2263 2375 8.954950 ACCAAACAATTACAATCACAATGAAA 57.045 26.923 0.00 0.00 0.00 2.69
2264 2376 8.954950 AACCAAACAATTACAATCACAATGAA 57.045 26.923 0.00 0.00 0.00 2.57
2265 2377 8.200120 TGAACCAAACAATTACAATCACAATGA 58.800 29.630 0.00 0.00 0.00 2.57
2266 2378 8.362860 TGAACCAAACAATTACAATCACAATG 57.637 30.769 0.00 0.00 0.00 2.82
2268 2380 8.777865 TTTGAACCAAACAATTACAATCACAA 57.222 26.923 0.00 0.00 0.00 3.33
2301 2413 9.860898 GAGCAATGGAAAACAGAATATTACTTT 57.139 29.630 0.00 0.00 0.00 2.66
2302 2414 9.247861 AGAGCAATGGAAAACAGAATATTACTT 57.752 29.630 0.00 0.00 0.00 2.24
2303 2415 8.814038 AGAGCAATGGAAAACAGAATATTACT 57.186 30.769 0.00 0.00 0.00 2.24
2304 2416 9.937175 GTAGAGCAATGGAAAACAGAATATTAC 57.063 33.333 0.00 0.00 0.00 1.89
2305 2417 9.679661 TGTAGAGCAATGGAAAACAGAATATTA 57.320 29.630 0.00 0.00 0.00 0.98
2306 2418 8.462016 GTGTAGAGCAATGGAAAACAGAATATT 58.538 33.333 0.00 0.00 0.00 1.28
2307 2419 7.611467 TGTGTAGAGCAATGGAAAACAGAATAT 59.389 33.333 0.00 0.00 0.00 1.28
2308 2420 6.939730 TGTGTAGAGCAATGGAAAACAGAATA 59.060 34.615 0.00 0.00 0.00 1.75
2309 2421 5.769662 TGTGTAGAGCAATGGAAAACAGAAT 59.230 36.000 0.00 0.00 0.00 2.40
2310 2422 5.129634 TGTGTAGAGCAATGGAAAACAGAA 58.870 37.500 0.00 0.00 0.00 3.02
2311 2423 4.713553 TGTGTAGAGCAATGGAAAACAGA 58.286 39.130 0.00 0.00 0.00 3.41
2312 2424 5.437289 TTGTGTAGAGCAATGGAAAACAG 57.563 39.130 0.00 0.00 0.00 3.16
2313 2425 5.843673 TTTGTGTAGAGCAATGGAAAACA 57.156 34.783 0.00 0.00 0.00 2.83
2314 2426 6.198966 CACTTTTGTGTAGAGCAATGGAAAAC 59.801 38.462 0.00 0.00 44.94 2.43
2315 2427 6.272318 CACTTTTGTGTAGAGCAATGGAAAA 58.728 36.000 0.00 0.00 44.94 2.29
2316 2428 5.830912 CACTTTTGTGTAGAGCAATGGAAA 58.169 37.500 0.00 0.00 44.94 3.13
2317 2429 5.437289 CACTTTTGTGTAGAGCAATGGAA 57.563 39.130 0.00 0.00 44.94 3.53
2331 2443 7.040409 GGGTTCTAGAATCATCAACACTTTTGT 60.040 37.037 17.41 0.00 37.67 2.83
2332 2444 7.175641 AGGGTTCTAGAATCATCAACACTTTTG 59.824 37.037 17.41 0.00 25.41 2.44
2333 2445 7.234355 AGGGTTCTAGAATCATCAACACTTTT 58.766 34.615 17.41 0.00 25.41 2.27
2334 2446 6.784031 AGGGTTCTAGAATCATCAACACTTT 58.216 36.000 17.41 0.00 25.41 2.66
2335 2447 6.013379 TGAGGGTTCTAGAATCATCAACACTT 60.013 38.462 26.35 0.00 38.99 3.16
2336 2448 5.485353 TGAGGGTTCTAGAATCATCAACACT 59.515 40.000 26.35 11.34 38.99 3.55
2337 2449 5.734720 TGAGGGTTCTAGAATCATCAACAC 58.265 41.667 26.35 6.62 38.99 3.32
2338 2450 6.373005 TTGAGGGTTCTAGAATCATCAACA 57.627 37.500 31.68 17.94 44.20 3.33
2340 2452 7.632861 TCATTTGAGGGTTCTAGAATCATCAA 58.367 34.615 31.68 31.68 46.38 2.57
2341 2453 7.199167 TCATTTGAGGGTTCTAGAATCATCA 57.801 36.000 25.15 25.15 40.01 3.07
2342 2454 7.117523 CGATCATTTGAGGGTTCTAGAATCATC 59.882 40.741 20.82 20.82 33.25 2.92
2343 2455 6.933521 CGATCATTTGAGGGTTCTAGAATCAT 59.066 38.462 17.41 10.56 0.00 2.45
2344 2456 6.098266 TCGATCATTTGAGGGTTCTAGAATCA 59.902 38.462 17.41 10.24 0.00 2.57
2345 2457 6.516718 TCGATCATTTGAGGGTTCTAGAATC 58.483 40.000 8.75 7.97 0.00 2.52
2346 2458 6.485830 TCGATCATTTGAGGGTTCTAGAAT 57.514 37.500 8.75 0.00 0.00 2.40
2347 2459 5.682471 GCTCGATCATTTGAGGGTTCTAGAA 60.682 44.000 0.00 0.00 34.37 2.10
2348 2460 4.202161 GCTCGATCATTTGAGGGTTCTAGA 60.202 45.833 0.00 0.00 34.37 2.43
2349 2461 4.054671 GCTCGATCATTTGAGGGTTCTAG 58.945 47.826 0.00 0.00 34.37 2.43
2350 2462 3.450817 TGCTCGATCATTTGAGGGTTCTA 59.549 43.478 0.00 0.00 34.37 2.10
2351 2463 2.237143 TGCTCGATCATTTGAGGGTTCT 59.763 45.455 0.00 0.00 34.37 3.01
2352 2464 2.352960 GTGCTCGATCATTTGAGGGTTC 59.647 50.000 0.00 0.00 34.37 3.62
2353 2465 2.290260 TGTGCTCGATCATTTGAGGGTT 60.290 45.455 0.00 0.00 34.37 4.11
2354 2466 1.278985 TGTGCTCGATCATTTGAGGGT 59.721 47.619 0.00 0.00 34.37 4.34
2355 2467 2.028420 TGTGCTCGATCATTTGAGGG 57.972 50.000 0.00 0.00 34.37 4.30
2356 2468 2.223203 GCTTGTGCTCGATCATTTGAGG 60.223 50.000 0.00 0.00 34.37 3.86
2357 2469 3.048942 GCTTGTGCTCGATCATTTGAG 57.951 47.619 0.00 0.00 36.57 3.02
2369 2481 6.154021 ATTCCATTGAAATTAGAGCTTGTGCT 59.846 34.615 0.00 0.00 42.66 4.40
2370 2482 5.314923 TCCATTGAAATTAGAGCTTGTGC 57.685 39.130 0.00 0.00 40.05 4.57
2371 2483 6.755141 CCATTCCATTGAAATTAGAGCTTGTG 59.245 38.462 0.00 0.00 33.32 3.33
2372 2484 6.438425 ACCATTCCATTGAAATTAGAGCTTGT 59.562 34.615 0.00 0.00 33.32 3.16
2373 2485 6.755141 CACCATTCCATTGAAATTAGAGCTTG 59.245 38.462 0.00 0.00 33.32 4.01
2374 2486 6.664816 TCACCATTCCATTGAAATTAGAGCTT 59.335 34.615 0.00 0.00 33.32 3.74
2375 2487 6.189859 TCACCATTCCATTGAAATTAGAGCT 58.810 36.000 0.00 0.00 33.32 4.09
2376 2488 6.096001 ACTCACCATTCCATTGAAATTAGAGC 59.904 38.462 0.00 0.00 33.32 4.09
2377 2489 7.636150 ACTCACCATTCCATTGAAATTAGAG 57.364 36.000 0.00 0.00 33.32 2.43
2378 2490 8.328758 AGTACTCACCATTCCATTGAAATTAGA 58.671 33.333 0.00 0.00 33.32 2.10
2379 2491 8.400947 CAGTACTCACCATTCCATTGAAATTAG 58.599 37.037 0.00 0.00 33.32 1.73
2380 2492 7.339212 CCAGTACTCACCATTCCATTGAAATTA 59.661 37.037 0.00 0.00 33.32 1.40
2381 2493 6.153340 CCAGTACTCACCATTCCATTGAAATT 59.847 38.462 0.00 0.00 33.32 1.82
2382 2494 5.653769 CCAGTACTCACCATTCCATTGAAAT 59.346 40.000 0.00 0.00 33.32 2.17
2383 2495 5.009631 CCAGTACTCACCATTCCATTGAAA 58.990 41.667 0.00 0.00 33.32 2.69
2384 2496 4.288366 TCCAGTACTCACCATTCCATTGAA 59.712 41.667 0.00 0.00 34.33 2.69
2385 2497 3.843619 TCCAGTACTCACCATTCCATTGA 59.156 43.478 0.00 0.00 0.00 2.57
2386 2498 4.220693 TCCAGTACTCACCATTCCATTG 57.779 45.455 0.00 0.00 0.00 2.82
2387 2499 4.228210 ACATCCAGTACTCACCATTCCATT 59.772 41.667 0.00 0.00 0.00 3.16
2388 2500 3.782523 ACATCCAGTACTCACCATTCCAT 59.217 43.478 0.00 0.00 0.00 3.41
2389 2501 3.181329 ACATCCAGTACTCACCATTCCA 58.819 45.455 0.00 0.00 0.00 3.53
2390 2502 3.452627 AGACATCCAGTACTCACCATTCC 59.547 47.826 0.00 0.00 0.00 3.01
2391 2503 4.688021 GAGACATCCAGTACTCACCATTC 58.312 47.826 0.00 0.00 0.00 2.67
2392 2504 3.131223 CGAGACATCCAGTACTCACCATT 59.869 47.826 0.00 0.00 0.00 3.16
2393 2505 2.690497 CGAGACATCCAGTACTCACCAT 59.310 50.000 0.00 0.00 0.00 3.55
2394 2506 2.092323 CGAGACATCCAGTACTCACCA 58.908 52.381 0.00 0.00 0.00 4.17
2395 2507 1.202313 GCGAGACATCCAGTACTCACC 60.202 57.143 0.00 0.00 0.00 4.02
2396 2508 1.472878 TGCGAGACATCCAGTACTCAC 59.527 52.381 0.00 0.00 0.00 3.51
2397 2509 1.472878 GTGCGAGACATCCAGTACTCA 59.527 52.381 0.00 0.00 0.00 3.41
2398 2510 1.202313 GGTGCGAGACATCCAGTACTC 60.202 57.143 0.00 0.00 0.00 2.59
2399 2511 0.818296 GGTGCGAGACATCCAGTACT 59.182 55.000 0.00 0.00 0.00 2.73
2400 2512 3.347411 GGTGCGAGACATCCAGTAC 57.653 57.895 0.00 0.00 0.00 2.73
2406 2518 1.068250 GCTAGGGGTGCGAGACATC 59.932 63.158 0.00 0.00 0.00 3.06
2407 2519 0.978146 AAGCTAGGGGTGCGAGACAT 60.978 55.000 0.00 0.00 35.28 3.06
2408 2520 0.323999 TAAGCTAGGGGTGCGAGACA 60.324 55.000 0.00 0.00 35.28 3.41
2409 2521 0.386113 CTAAGCTAGGGGTGCGAGAC 59.614 60.000 0.00 0.00 35.28 3.36
2410 2522 0.033405 ACTAAGCTAGGGGTGCGAGA 60.033 55.000 0.00 0.00 35.28 4.04
2411 2523 1.337387 GTACTAAGCTAGGGGTGCGAG 59.663 57.143 0.00 0.00 35.28 5.03
2412 2524 1.396653 GTACTAAGCTAGGGGTGCGA 58.603 55.000 0.00 0.00 35.28 5.10
2413 2525 0.030369 CGTACTAAGCTAGGGGTGCG 59.970 60.000 0.00 0.00 35.28 5.34
2414 2526 1.109609 ACGTACTAAGCTAGGGGTGC 58.890 55.000 0.00 0.00 0.00 5.01
2415 2527 1.202382 GCACGTACTAAGCTAGGGGTG 60.202 57.143 0.00 0.00 0.00 4.61
2416 2528 1.109609 GCACGTACTAAGCTAGGGGT 58.890 55.000 0.00 0.00 0.00 4.95
2417 2529 1.067212 CTGCACGTACTAAGCTAGGGG 59.933 57.143 0.00 0.00 0.00 4.79
2418 2530 2.022195 TCTGCACGTACTAAGCTAGGG 58.978 52.381 0.00 0.00 0.00 3.53
2419 2531 3.992260 ATCTGCACGTACTAAGCTAGG 57.008 47.619 0.00 0.00 0.00 3.02
2420 2532 5.676532 AGTATCTGCACGTACTAAGCTAG 57.323 43.478 4.80 0.00 29.75 3.42
2421 2533 5.178996 GCTAGTATCTGCACGTACTAAGCTA 59.821 44.000 12.22 0.00 34.13 3.32
2422 2534 4.023878 GCTAGTATCTGCACGTACTAAGCT 60.024 45.833 12.22 0.00 34.13 3.74
2423 2535 4.023878 AGCTAGTATCTGCACGTACTAAGC 60.024 45.833 12.22 14.86 34.13 3.09
2424 2536 5.444983 CAGCTAGTATCTGCACGTACTAAG 58.555 45.833 12.22 8.90 34.13 2.18
2425 2537 4.275196 CCAGCTAGTATCTGCACGTACTAA 59.725 45.833 12.22 1.53 34.13 2.24
2426 2538 3.813724 CCAGCTAGTATCTGCACGTACTA 59.186 47.826 11.15 11.15 33.48 1.82
2427 2539 2.619177 CCAGCTAGTATCTGCACGTACT 59.381 50.000 10.24 10.24 35.47 2.73
2428 2540 2.287668 CCCAGCTAGTATCTGCACGTAC 60.288 54.545 0.00 0.00 0.00 3.67
2429 2541 1.954382 CCCAGCTAGTATCTGCACGTA 59.046 52.381 0.00 0.00 0.00 3.57
2430 2542 0.747255 CCCAGCTAGTATCTGCACGT 59.253 55.000 0.00 0.00 0.00 4.49
2431 2543 1.032794 TCCCAGCTAGTATCTGCACG 58.967 55.000 0.00 0.00 0.00 5.34
2432 2544 2.432510 ACTTCCCAGCTAGTATCTGCAC 59.567 50.000 0.00 0.00 0.00 4.57
2433 2545 2.695666 GACTTCCCAGCTAGTATCTGCA 59.304 50.000 0.00 0.00 0.00 4.41
2434 2546 2.036604 GGACTTCCCAGCTAGTATCTGC 59.963 54.545 0.00 0.00 34.14 4.26
2448 2560 1.286248 TCTTTAGCAGGGGGACTTCC 58.714 55.000 0.00 0.00 0.00 3.46
2449 2561 3.082548 GTTTCTTTAGCAGGGGGACTTC 58.917 50.000 0.00 0.00 0.00 3.01
2450 2562 2.716969 AGTTTCTTTAGCAGGGGGACTT 59.283 45.455 0.00 0.00 0.00 3.01
2451 2563 2.349445 AGTTTCTTTAGCAGGGGGACT 58.651 47.619 0.00 0.00 0.00 3.85
2452 2564 2.881111 AGTTTCTTTAGCAGGGGGAC 57.119 50.000 0.00 0.00 0.00 4.46
2453 2565 4.291249 ACATAAGTTTCTTTAGCAGGGGGA 59.709 41.667 0.00 0.00 0.00 4.81
2454 2566 4.600062 ACATAAGTTTCTTTAGCAGGGGG 58.400 43.478 0.00 0.00 0.00 5.40
2455 2567 6.263168 CCATACATAAGTTTCTTTAGCAGGGG 59.737 42.308 0.00 0.00 0.00 4.79
2456 2568 6.828785 ACCATACATAAGTTTCTTTAGCAGGG 59.171 38.462 0.00 0.00 0.00 4.45
2457 2569 7.552687 TCACCATACATAAGTTTCTTTAGCAGG 59.447 37.037 0.00 0.00 0.00 4.85
2458 2570 8.492673 TCACCATACATAAGTTTCTTTAGCAG 57.507 34.615 0.00 0.00 0.00 4.24
2459 2571 9.461312 AATCACCATACATAAGTTTCTTTAGCA 57.539 29.630 0.00 0.00 0.00 3.49
2463 2575 9.686683 AGCTAATCACCATACATAAGTTTCTTT 57.313 29.630 0.00 0.00 0.00 2.52
2474 2586 9.555727 GAACCTAATTTAGCTAATCACCATACA 57.444 33.333 7.08 0.00 0.00 2.29
2483 2595 6.239629 CCCCTCTCGAACCTAATTTAGCTAAT 60.240 42.308 7.08 0.00 0.00 1.73
2500 2612 2.896685 AGAGAATCATTAGCCCCTCTCG 59.103 50.000 0.00 0.00 37.82 4.04
2501 2613 3.645687 ACAGAGAATCATTAGCCCCTCTC 59.354 47.826 0.00 0.00 37.82 3.20
2515 2628 1.734465 GCAAGCTACGCAACAGAGAAT 59.266 47.619 3.25 0.00 0.00 2.40
2525 2638 0.724785 GTTTTCACGGCAAGCTACGC 60.725 55.000 5.44 2.59 0.00 4.42
2526 2639 0.865769 AGTTTTCACGGCAAGCTACG 59.134 50.000 4.13 4.13 0.00 3.51
2611 2754 5.757850 AAGACACCACAAATTGAGAGAAC 57.242 39.130 0.00 0.00 0.00 3.01
2686 2831 7.310921 CCCTGCTATCTACATAATCACTCCAAT 60.311 40.741 0.00 0.00 0.00 3.16
2692 2837 4.508662 GCCCCTGCTATCTACATAATCAC 58.491 47.826 0.00 0.00 33.53 3.06
2695 2840 2.501723 CCGCCCCTGCTATCTACATAAT 59.498 50.000 0.00 0.00 34.43 1.28
2701 2846 1.533273 GGTCCGCCCCTGCTATCTA 60.533 63.158 0.00 0.00 34.43 1.98
2720 4072 0.109132 GCCGGGTCATTTTTGCTCTG 60.109 55.000 2.18 0.00 0.00 3.35
2734 4086 2.510691 GTACATGTGGACGCCGGG 60.511 66.667 9.11 0.00 0.00 5.73
2758 4110 0.180171 TGCCTGGTATCCCAATCGTG 59.820 55.000 0.00 0.00 41.27 4.35
2765 4117 8.491134 TGTATGTATATTATTGCCTGGTATCCC 58.509 37.037 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.