Multiple sequence alignment - TraesCS3D01G010700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G010700 chr3D 100.000 5207 0 0 1 5207 3991755 3986549 0.000000e+00 9616.0
1 TraesCS3D01G010700 chr3D 100.000 178 0 0 5455 5632 3986301 3986124 4.210000e-86 329.0
2 TraesCS3D01G010700 chr3D 89.714 175 17 1 3836 4010 87926161 87925988 7.340000e-54 222.0
3 TraesCS3D01G010700 chr3D 86.755 151 18 2 4116 4266 577859636 577859784 3.490000e-37 167.0
4 TraesCS3D01G010700 chr3D 83.824 136 20 1 5495 5628 303355366 303355501 1.650000e-25 128.0
5 TraesCS3D01G010700 chr3D 97.436 39 0 1 1381 1418 463716858 463716896 1.310000e-06 65.8
6 TraesCS3D01G010700 chr3A 92.972 2120 80 27 1236 3340 9549782 9547717 0.000000e+00 3025.0
7 TraesCS3D01G010700 chr3A 89.987 749 49 14 3376 4105 9547719 9546978 0.000000e+00 944.0
8 TraesCS3D01G010700 chr3A 93.600 500 26 2 740 1237 9550519 9550024 0.000000e+00 741.0
9 TraesCS3D01G010700 chr3A 90.036 562 31 12 4263 4808 9546990 9546438 0.000000e+00 704.0
10 TraesCS3D01G010700 chr3A 90.164 305 23 6 1 304 9551158 9550860 1.900000e-104 390.0
11 TraesCS3D01G010700 chr3A 90.751 173 12 4 3836 4007 450010309 450010478 1.580000e-55 228.0
12 TraesCS3D01G010700 chr3A 81.595 163 26 3 5473 5632 624250499 624250660 1.270000e-26 132.0
13 TraesCS3D01G010700 chr3B 94.056 673 34 4 1437 2108 6252723 6252056 0.000000e+00 1016.0
14 TraesCS3D01G010700 chr3B 86.778 537 33 14 4306 4808 6250908 6250376 1.060000e-156 564.0
15 TraesCS3D01G010700 chr3B 89.604 404 37 2 4321 4724 6190628 6190230 5.030000e-140 508.0
16 TraesCS3D01G010700 chr3B 83.174 523 65 17 2577 3087 6251969 6251458 1.850000e-124 457.0
17 TraesCS3D01G010700 chr3B 85.430 453 30 20 796 1233 6253480 6253049 6.700000e-119 438.0
18 TraesCS3D01G010700 chr3B 94.595 185 10 0 3450 3634 6251203 6251019 2.570000e-73 287.0
19 TraesCS3D01G010700 chr3B 86.192 239 23 6 4824 5062 6248892 6248664 3.370000e-62 250.0
20 TraesCS3D01G010700 chr3B 86.266 233 18 3 3611 3833 6191008 6190780 2.030000e-59 241.0
21 TraesCS3D01G010700 chr3B 88.482 191 9 2 5455 5632 6248451 6248261 9.500000e-53 219.0
22 TraesCS3D01G010700 chr3B 90.000 110 9 2 3998 4105 6190776 6190667 2.120000e-29 141.0
23 TraesCS3D01G010700 chr3B 80.921 152 28 1 4116 4267 726359815 726359665 9.910000e-23 119.0
24 TraesCS3D01G010700 chr3B 94.118 34 2 0 577 610 783464423 783464390 1.000000e-02 52.8
25 TraesCS3D01G010700 chrUn 87.529 433 51 1 4297 4729 259481847 259481418 1.090000e-136 497.0
26 TraesCS3D01G010700 chrUn 84.979 233 20 4 3611 3833 259482202 259481975 7.340000e-54 222.0
27 TraesCS3D01G010700 chrUn 86.719 128 17 0 4116 4243 112855232 112855359 5.880000e-30 143.0
28 TraesCS3D01G010700 chrUn 90.000 110 9 1 3998 4105 259481971 259481862 2.120000e-29 141.0
29 TraesCS3D01G010700 chr2B 78.004 491 67 26 1 471 148422665 148423134 2.590000e-68 270.0
30 TraesCS3D01G010700 chr2B 89.205 176 17 2 3826 4001 206593729 206593556 9.500000e-53 219.0
31 TraesCS3D01G010700 chr2B 81.068 206 26 8 76 280 639181758 639181565 9.770000e-33 152.0
32 TraesCS3D01G010700 chr2B 100.000 28 0 0 577 604 439358655 439358682 1.000000e-02 52.8
33 TraesCS3D01G010700 chr2D 79.059 425 56 21 64 471 97278578 97278986 1.560000e-65 261.0
34 TraesCS3D01G010700 chr2D 73.726 628 106 41 9 604 376378003 376378603 2.070000e-44 191.0
35 TraesCS3D01G010700 chr2D 89.552 67 2 3 3286 3349 28839877 28839941 4.680000e-11 80.5
36 TraesCS3D01G010700 chr2D 85.507 69 8 1 538 604 26494881 26494949 2.820000e-08 71.3
37 TraesCS3D01G010700 chr2D 100.000 35 0 0 1387 1421 440323257 440323223 1.310000e-06 65.8
38 TraesCS3D01G010700 chr2D 100.000 35 0 0 1384 1418 473292196 473292230 1.310000e-06 65.8
39 TraesCS3D01G010700 chr2D 100.000 33 0 0 1386 1418 388818864 388818832 1.690000e-05 62.1
40 TraesCS3D01G010700 chr2D 97.222 36 0 1 1391 1425 114515579 114515544 6.090000e-05 60.2
41 TraesCS3D01G010700 chr2D 100.000 30 0 0 93 122 38790150 38790179 7.880000e-04 56.5
42 TraesCS3D01G010700 chr4A 90.110 182 14 4 3836 4016 97529993 97530171 3.390000e-57 233.0
43 TraesCS3D01G010700 chr4A 84.106 151 22 1 5473 5621 503609115 503609265 1.640000e-30 145.0
44 TraesCS3D01G010700 chr4A 92.157 51 2 2 1372 1422 740125677 740125725 2.820000e-08 71.3
45 TraesCS3D01G010700 chr4A 100.000 35 0 0 1388 1422 602248852 602248886 1.310000e-06 65.8
46 TraesCS3D01G010700 chr4A 100.000 33 0 0 1384 1416 681664836 681664804 1.690000e-05 62.1
47 TraesCS3D01G010700 chr1D 90.698 172 13 3 3828 3998 225704777 225704946 5.680000e-55 226.0
48 TraesCS3D01G010700 chr1D 100.000 36 0 0 1383 1418 476562500 476562465 3.640000e-07 67.6
49 TraesCS3D01G010700 chr1D 100.000 34 0 0 1385 1418 24714460 24714493 4.710000e-06 63.9
50 TraesCS3D01G010700 chr1D 100.000 33 0 0 1390 1422 333224072 333224104 1.690000e-05 62.1
51 TraesCS3D01G010700 chr1D 100.000 32 0 0 1387 1418 476562403 476562434 6.090000e-05 60.2
52 TraesCS3D01G010700 chr1D 97.143 35 0 1 1383 1416 38585673 38585639 2.190000e-04 58.4
53 TraesCS3D01G010700 chr1D 96.970 33 0 1 1387 1419 38585581 38585612 3.000000e-03 54.7
54 TraesCS3D01G010700 chr1D 100.000 29 0 0 1390 1418 353028795 353028767 3.000000e-03 54.7
55 TraesCS3D01G010700 chr4D 90.588 170 13 3 3836 4005 334164552 334164386 7.340000e-54 222.0
56 TraesCS3D01G010700 chr4D 100.000 42 0 0 3298 3339 62770192 62770233 1.680000e-10 78.7
57 TraesCS3D01G010700 chr4D 100.000 34 0 0 1385 1418 474587670 474587637 4.710000e-06 63.9
58 TraesCS3D01G010700 chr4B 89.205 176 17 2 3826 4001 549841746 549841919 9.500000e-53 219.0
59 TraesCS3D01G010700 chr4B 86.034 179 17 7 76 253 44182692 44182863 9.640000e-43 185.0
60 TraesCS3D01G010700 chr4B 92.500 40 2 1 1377 1416 644323131 644323093 7.880000e-04 56.5
61 TraesCS3D01G010700 chr2A 89.205 176 16 3 3836 4011 342647560 342647388 3.420000e-52 217.0
62 TraesCS3D01G010700 chr2A 83.516 91 12 3 95 184 765585924 765585836 1.300000e-11 82.4
63 TraesCS3D01G010700 chr2A 89.231 65 6 1 3286 3349 30798889 30798953 4.680000e-11 80.5
64 TraesCS3D01G010700 chr2A 89.231 65 6 1 3286 3349 30818609 30818673 4.680000e-11 80.5
65 TraesCS3D01G010700 chr2A 81.319 91 9 7 81 168 223610923 223611008 3.640000e-07 67.6
66 TraesCS3D01G010700 chr2A 87.755 49 6 0 556 604 624035709 624035757 2.190000e-04 58.4
67 TraesCS3D01G010700 chr1B 89.205 176 16 3 3826 4001 355947471 355947299 3.420000e-52 217.0
68 TraesCS3D01G010700 chr1B 74.089 494 83 29 128 604 21669122 21669587 1.620000e-35 161.0
69 TraesCS3D01G010700 chr1B 86.364 132 16 2 5496 5625 640598358 640598489 5.880000e-30 143.0
70 TraesCS3D01G010700 chr1B 81.379 145 19 8 81 220 622189209 622189068 1.660000e-20 111.0
71 TraesCS3D01G010700 chr5A 85.897 156 21 1 4105 4260 255492085 255491931 1.260000e-36 165.0
72 TraesCS3D01G010700 chr5A 80.808 99 14 3 80 176 561512423 561512328 7.830000e-09 73.1
73 TraesCS3D01G010700 chr7D 84.000 150 24 0 4116 4265 12179812 12179663 1.640000e-30 145.0
74 TraesCS3D01G010700 chr7D 85.507 138 20 0 4103 4240 28813250 28813387 1.640000e-30 145.0
75 TraesCS3D01G010700 chr7D 92.453 53 3 1 89 141 27818894 27818843 2.180000e-09 75.0
76 TraesCS3D01G010700 chr7D 100.000 38 0 0 1386 1423 96769779 96769742 2.820000e-08 71.3
77 TraesCS3D01G010700 chr7D 88.333 60 4 2 3284 3342 177120087 177120030 1.010000e-07 69.4
78 TraesCS3D01G010700 chr7D 97.368 38 1 0 1385 1422 192021125 192021162 1.310000e-06 65.8
79 TraesCS3D01G010700 chr5D 87.805 123 13 1 5496 5616 33062722 33062844 5.880000e-30 143.0
80 TraesCS3D01G010700 chr5D 84.892 139 16 4 5482 5616 37033160 37033023 9.840000e-28 135.0
81 TraesCS3D01G010700 chr5D 82.069 145 23 2 5479 5621 482546553 482546696 2.760000e-23 121.0
82 TraesCS3D01G010700 chr5D 85.714 84 10 2 94 176 300319393 300319311 2.800000e-13 87.9
83 TraesCS3D01G010700 chr5D 100.000 34 0 0 1385 1418 282007010 282007043 4.710000e-06 63.9
84 TraesCS3D01G010700 chr5D 94.595 37 2 0 1380 1416 315928969 315929005 2.190000e-04 58.4
85 TraesCS3D01G010700 chr6B 72.407 540 113 28 5 529 261664839 261664321 7.610000e-29 139.0
86 TraesCS3D01G010700 chr6B 81.879 149 27 0 4118 4266 7144446 7144594 5.920000e-25 126.0
87 TraesCS3D01G010700 chr6B 97.826 46 1 0 3298 3343 632187340 632187295 4.680000e-11 80.5
88 TraesCS3D01G010700 chr6B 97.500 40 0 1 1387 1425 82186798 82186837 3.640000e-07 67.6
89 TraesCS3D01G010700 chr7B 83.459 133 20 1 5496 5626 483234243 483234375 7.660000e-24 122.0
90 TraesCS3D01G010700 chr7B 84.270 89 11 3 4106 4193 717345121 717345207 3.620000e-12 84.2
91 TraesCS3D01G010700 chr7B 100.000 38 0 0 1386 1423 51082136 51082099 2.820000e-08 71.3
92 TraesCS3D01G010700 chr7A 80.921 152 19 7 4117 4266 696091527 696091384 1.660000e-20 111.0
93 TraesCS3D01G010700 chr7A 93.878 49 1 2 1385 1432 82192119 82192166 7.830000e-09 73.1
94 TraesCS3D01G010700 chr7A 100.000 38 0 0 1386 1423 99813520 99813483 2.820000e-08 71.3
95 TraesCS3D01G010700 chr6A 100.000 45 0 0 3298 3342 507148560 507148516 3.620000e-12 84.2
96 TraesCS3D01G010700 chr6A 100.000 32 0 0 1387 1418 222555005 222554974 6.090000e-05 60.2
97 TraesCS3D01G010700 chr6D 89.474 57 4 1 3287 3343 23096039 23096093 2.820000e-08 71.3
98 TraesCS3D01G010700 chr6D 100.000 31 0 0 1386 1416 168220628 168220598 2.190000e-04 58.4
99 TraesCS3D01G010700 chr6D 100.000 31 0 0 1386 1416 360685150 360685120 2.190000e-04 58.4
100 TraesCS3D01G010700 chr6D 80.822 73 11 3 577 647 147647829 147647758 3.000000e-03 54.7
101 TraesCS3D01G010700 chr1A 97.059 34 1 0 1385 1418 493816593 493816626 2.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G010700 chr3D 3986124 3991755 5631 True 4972.500000 9616 100.000000 1 5632 2 chr3D.!!$R2 5631
1 TraesCS3D01G010700 chr3A 9546438 9551158 4720 True 1160.800000 3025 91.351800 1 4808 5 chr3A.!!$R1 4807
2 TraesCS3D01G010700 chr3B 6248261 6253480 5219 True 461.571429 1016 88.386714 796 5632 7 chr3B.!!$R4 4836
3 TraesCS3D01G010700 chr3B 6190230 6191008 778 True 296.666667 508 88.623333 3611 4724 3 chr3B.!!$R3 1113
4 TraesCS3D01G010700 chrUn 259481418 259482202 784 True 286.666667 497 87.502667 3611 4729 3 chrUn.!!$R1 1118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 747 0.673333 TACCGTGATGCTGCTTGTGG 60.673 55.000 0.00 0.00 0.00 4.17 F
1220 1275 0.036875 ACTTGGTGCCTGCTAGTTCC 59.963 55.000 0.00 0.00 0.00 3.62 F
1882 2204 1.130561 GCTACGGCATGGTTGAGTTTC 59.869 52.381 0.00 0.00 38.54 2.78 F
2362 2705 0.249784 CCCATCAGTGATGCCTCTCG 60.250 60.000 25.08 11.75 38.59 4.04 F
3764 4129 0.602905 AGAAACTGCGGTGCTGGTAC 60.603 55.000 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 2204 0.039165 TAGACTGTGCTGACTGTGCG 60.039 55.0 0.00 0.00 34.62 5.34 R
2176 2507 0.108615 AGAACCAAGATCGCTGGTCG 60.109 55.0 19.26 0.00 34.39 4.79 R
2998 3348 0.172803 CTGCAGAAAAGCTCCCATGC 59.827 55.0 8.42 6.91 34.99 4.06 R
4129 4498 0.029035 CGAGCCAATTCTCAGCATGC 59.971 55.0 10.51 10.51 34.76 4.06 R
4870 6747 0.034756 TGATCACCTCACCGTTGTGG 59.965 55.0 0.00 0.00 42.98 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 7.520119 ACACATGTATACTTTGTCATACACG 57.480 36.000 0.00 0.00 39.70 4.49
209 211 9.034544 ACATCTTTTGAATACTGTTTTTCAAGC 57.965 29.630 14.28 0.00 41.42 4.01
212 214 8.031864 TCTTTTGAATACTGTTTTTCAAGCACA 58.968 29.630 14.28 3.09 41.42 4.57
225 227 9.553418 GTTTTTCAAGCACATGTTAAAACATTT 57.447 25.926 5.60 0.00 46.95 2.32
395 397 7.993821 TTTTGAATGTACGAAGCATTTTTGA 57.006 28.000 0.00 0.00 36.77 2.69
396 398 7.993821 TTTGAATGTACGAAGCATTTTTGAA 57.006 28.000 0.00 0.00 36.77 2.69
397 399 6.984740 TGAATGTACGAAGCATTTTTGAAC 57.015 33.333 0.00 0.00 36.77 3.18
398 400 6.734137 TGAATGTACGAAGCATTTTTGAACT 58.266 32.000 0.00 0.00 36.77 3.01
399 401 7.866729 TGAATGTACGAAGCATTTTTGAACTA 58.133 30.769 0.00 0.00 36.77 2.24
400 402 7.801315 TGAATGTACGAAGCATTTTTGAACTAC 59.199 33.333 0.00 0.00 36.77 2.73
401 403 6.606234 TGTACGAAGCATTTTTGAACTACA 57.394 33.333 0.00 0.00 0.00 2.74
402 404 6.423862 TGTACGAAGCATTTTTGAACTACAC 58.576 36.000 0.00 0.00 0.00 2.90
403 405 5.493133 ACGAAGCATTTTTGAACTACACA 57.507 34.783 0.00 0.00 0.00 3.72
404 406 5.885881 ACGAAGCATTTTTGAACTACACAA 58.114 33.333 0.00 0.00 0.00 3.33
405 407 6.326375 ACGAAGCATTTTTGAACTACACAAA 58.674 32.000 0.00 0.00 35.81 2.83
406 408 6.978080 ACGAAGCATTTTTGAACTACACAAAT 59.022 30.769 0.00 0.00 38.79 2.32
407 409 8.132362 ACGAAGCATTTTTGAACTACACAAATA 58.868 29.630 0.00 0.00 36.95 1.40
408 410 8.963130 CGAAGCATTTTTGAACTACACAAATAA 58.037 29.630 0.00 0.00 36.95 1.40
477 479 3.971245 TGGGTGACATTTTTATTGGCC 57.029 42.857 0.00 0.00 0.00 5.36
479 481 2.093181 GGGTGACATTTTTATTGGCCCC 60.093 50.000 0.00 0.00 0.00 5.80
480 482 2.569404 GGTGACATTTTTATTGGCCCCA 59.431 45.455 0.00 0.00 0.00 4.96
484 486 5.532779 GTGACATTTTTATTGGCCCCAAAAA 59.467 36.000 16.63 16.63 39.55 1.94
531 534 8.649841 CATTTTTGGTACACATGATTGACATTC 58.350 33.333 0.00 0.00 39.29 2.67
533 536 6.890979 TTGGTACACATGATTGACATTCAA 57.109 33.333 0.00 0.00 38.56 2.69
534 537 7.465353 TTGGTACACATGATTGACATTCAAT 57.535 32.000 0.00 0.96 44.49 2.57
582 588 6.767524 TTGTATGCACCCGAAATATTTTCT 57.232 33.333 1.43 0.00 0.00 2.52
699 739 8.803397 TGTAATCTATATACTACCGTGATGCT 57.197 34.615 0.00 0.00 0.00 3.79
703 743 4.873746 ATATACTACCGTGATGCTGCTT 57.126 40.909 0.00 0.00 0.00 3.91
707 747 0.673333 TACCGTGATGCTGCTTGTGG 60.673 55.000 0.00 0.00 0.00 4.17
717 757 1.228429 TGCTTGTGGTTACTGGGCC 60.228 57.895 0.00 0.00 0.00 5.80
721 761 4.029809 GTGGTTACTGGGCCGGCT 62.030 66.667 28.56 9.11 0.00 5.52
722 762 2.284773 TGGTTACTGGGCCGGCTA 60.285 61.111 28.56 15.15 0.00 3.93
723 763 2.363975 TGGTTACTGGGCCGGCTAG 61.364 63.158 28.56 25.58 0.00 3.42
724 764 2.203029 GTTACTGGGCCGGCTAGC 60.203 66.667 28.56 9.90 0.00 3.42
726 766 2.432300 TTACTGGGCCGGCTAGCTC 61.432 63.158 28.56 9.02 0.00 4.09
923 976 1.243342 CCGCCCACAAAGATCTTGCA 61.243 55.000 9.17 0.00 0.00 4.08
952 1005 3.394836 GCGGTCTTGCCCTCTCCT 61.395 66.667 0.00 0.00 0.00 3.69
957 1010 1.304962 TCTTGCCCTCTCCTACGCA 60.305 57.895 0.00 0.00 0.00 5.24
980 1033 4.736896 GAGCCACCACGGACGGAC 62.737 72.222 0.00 0.00 36.56 4.79
1087 1142 1.633561 CAAGAGCATCGCTTTCTCGA 58.366 50.000 0.00 0.00 39.88 4.04
1179 1234 3.193757 CCGGAGATCGTCGGTTCA 58.806 61.111 17.71 0.00 41.23 3.18
1216 1271 0.905357 AGGTACTTGGTGCCTGCTAG 59.095 55.000 6.52 0.00 46.38 3.42
1220 1275 0.036875 ACTTGGTGCCTGCTAGTTCC 59.963 55.000 0.00 0.00 0.00 3.62
1472 1793 5.014228 ACCCTAAGATGTAAAGTTTCTGCCT 59.986 40.000 0.00 0.00 0.00 4.75
1476 1797 8.041323 CCTAAGATGTAAAGTTTCTGCCTCTTA 58.959 37.037 0.00 2.80 0.00 2.10
1503 1824 1.213013 CTAGACTCAACCGTGCGCT 59.787 57.895 9.73 0.00 0.00 5.92
1523 1844 4.379793 CGCTTGAGCTTATTGTTTGTTCAC 59.620 41.667 1.07 0.00 39.32 3.18
1769 2091 1.497991 ATGTGTATACGATGTGCCGC 58.502 50.000 0.00 0.00 0.00 6.53
1773 2095 1.137513 GTATACGATGTGCCGCCTTC 58.862 55.000 0.00 0.00 0.00 3.46
1882 2204 1.130561 GCTACGGCATGGTTGAGTTTC 59.869 52.381 0.00 0.00 38.54 2.78
1911 2233 2.560542 CAGCACAGTCTAGTGAAGGAGT 59.439 50.000 0.00 0.00 42.05 3.85
1993 2315 6.238786 CGTATCTGCTCATACTACTTGGTCTT 60.239 42.308 4.69 0.00 0.00 3.01
2176 2507 4.550076 CCTGATATCTGGGGATTGAGTC 57.450 50.000 18.54 0.00 33.71 3.36
2204 2547 2.363683 GATCTTGGTTCTTGCTGGGAG 58.636 52.381 0.00 0.00 0.00 4.30
2222 2565 2.877168 GGAGATGCTTGTCATGGATCAC 59.123 50.000 18.43 13.44 35.05 3.06
2223 2566 3.538591 GAGATGCTTGTCATGGATCACA 58.461 45.455 18.43 0.00 35.05 3.58
2224 2567 3.943381 GAGATGCTTGTCATGGATCACAA 59.057 43.478 18.43 0.00 35.05 3.33
2244 2587 1.435168 AGGGGTAGAGGGATGAGGATC 59.565 57.143 0.00 0.00 0.00 3.36
2260 2603 2.521841 AGGATCAGATGAGAGGAGGGAA 59.478 50.000 0.00 0.00 0.00 3.97
2261 2604 2.899256 GGATCAGATGAGAGGAGGGAAG 59.101 54.545 0.00 0.00 0.00 3.46
2262 2605 3.437784 GGATCAGATGAGAGGAGGGAAGA 60.438 52.174 0.00 0.00 0.00 2.87
2263 2606 3.311167 TCAGATGAGAGGAGGGAAGAG 57.689 52.381 0.00 0.00 0.00 2.85
2264 2607 2.855599 TCAGATGAGAGGAGGGAAGAGA 59.144 50.000 0.00 0.00 0.00 3.10
2265 2608 3.117550 TCAGATGAGAGGAGGGAAGAGAG 60.118 52.174 0.00 0.00 0.00 3.20
2266 2609 3.117550 CAGATGAGAGGAGGGAAGAGAGA 60.118 52.174 0.00 0.00 0.00 3.10
2267 2610 3.139025 AGATGAGAGGAGGGAAGAGAGAG 59.861 52.174 0.00 0.00 0.00 3.20
2268 2611 2.567862 TGAGAGGAGGGAAGAGAGAGA 58.432 52.381 0.00 0.00 0.00 3.10
2291 2634 3.115390 AGAGAGAGAGAGAGCAGGTAGT 58.885 50.000 0.00 0.00 0.00 2.73
2341 2684 0.517316 GTTTTGCTACTGCTCCCACG 59.483 55.000 0.00 0.00 40.48 4.94
2347 2690 1.305802 TACTGCTCCCACGTCCCAT 60.306 57.895 0.00 0.00 0.00 4.00
2351 2694 2.660064 GCTCCCACGTCCCATCAGT 61.660 63.158 0.00 0.00 0.00 3.41
2353 2696 1.229051 TCCCACGTCCCATCAGTGA 60.229 57.895 0.00 0.00 38.06 3.41
2362 2705 0.249784 CCCATCAGTGATGCCTCTCG 60.250 60.000 25.08 11.75 38.59 4.04
2364 2707 0.749049 CATCAGTGATGCCTCTCGGA 59.251 55.000 19.79 0.00 33.17 4.55
2387 2730 3.414272 GCAGGCTTGGTGCTATCG 58.586 61.111 0.00 0.00 42.39 2.92
2397 2740 0.864455 GGTGCTATCGATTGCTGAGC 59.136 55.000 27.59 19.07 0.00 4.26
2403 2746 3.873805 TCGATTGCTGAGCGATAGG 57.126 52.632 7.25 3.09 41.93 2.57
2417 2760 1.754803 CGATAGGTACAAGAGGGTGCA 59.245 52.381 0.00 0.00 0.00 4.57
2422 2765 1.339151 GGTACAAGAGGGTGCAGGAAG 60.339 57.143 0.00 0.00 0.00 3.46
2423 2766 1.348036 GTACAAGAGGGTGCAGGAAGT 59.652 52.381 0.00 0.00 0.00 3.01
2430 2773 2.540145 GGTGCAGGAAGTAACACCG 58.460 57.895 0.00 0.00 42.84 4.94
2441 2784 2.151202 AGTAACACCGGTTGCAATCTG 58.849 47.619 2.97 3.54 41.46 2.90
2442 2785 1.199097 GTAACACCGGTTGCAATCTGG 59.801 52.381 19.34 19.34 39.17 3.86
2446 2789 1.545582 CACCGGTTGCAATCTGGATTT 59.454 47.619 24.74 7.80 35.49 2.17
2447 2790 2.029110 CACCGGTTGCAATCTGGATTTT 60.029 45.455 24.74 7.53 35.49 1.82
2453 2796 7.147742 ACCGGTTGCAATCTGGATTTTTATTAT 60.148 33.333 24.74 4.55 35.49 1.28
2455 2798 9.097257 CGGTTGCAATCTGGATTTTTATTATTT 57.903 29.630 8.32 0.00 0.00 1.40
2504 2847 9.988815 AGTACCTTATATTGTCAATCTGTCATC 57.011 33.333 0.07 0.00 0.00 2.92
2569 2912 1.076014 CTTACCCAACCCACACCCC 59.924 63.158 0.00 0.00 0.00 4.95
2815 3162 2.856222 AGGCAAGTGCAATATCTAGGC 58.144 47.619 5.52 0.00 44.36 3.93
2949 3299 3.994392 TCCTTGATTACGAGAGTTGTTGC 59.006 43.478 0.00 0.00 46.40 4.17
3071 3426 7.119699 CAGTATGACTGCTTATGTTTCCTCAAA 59.880 37.037 0.00 0.00 39.62 2.69
3168 3523 2.050918 TCCATGGAACGTATGGGCATA 58.949 47.619 13.46 0.00 44.18 3.14
3181 3536 5.451381 CGTATGGGCATACAACTAGTCTTCA 60.451 44.000 0.00 0.00 42.82 3.02
3182 3537 4.901197 TGGGCATACAACTAGTCTTCAA 57.099 40.909 0.00 0.00 0.00 2.69
3342 3697 9.502035 TCATATATTTAGGAACGGAGGGAATAT 57.498 33.333 0.00 0.00 0.00 1.28
3345 3700 4.595762 TTAGGAACGGAGGGAATATTCG 57.404 45.455 9.32 0.88 0.00 3.34
3346 3701 2.395619 AGGAACGGAGGGAATATTCGT 58.604 47.619 9.32 1.52 35.48 3.85
3347 3702 2.770232 AGGAACGGAGGGAATATTCGTT 59.230 45.455 10.55 10.55 44.96 3.85
3348 3703 3.962718 AGGAACGGAGGGAATATTCGTTA 59.037 43.478 9.32 0.00 42.84 3.18
3349 3704 4.053983 GGAACGGAGGGAATATTCGTTAC 58.946 47.826 9.32 7.47 42.84 2.50
3350 3705 4.441913 GGAACGGAGGGAATATTCGTTACA 60.442 45.833 13.74 0.00 42.28 2.41
3351 3706 4.950205 ACGGAGGGAATATTCGTTACAT 57.050 40.909 9.32 0.00 0.00 2.29
3352 3707 4.628074 ACGGAGGGAATATTCGTTACATG 58.372 43.478 9.32 0.00 0.00 3.21
3353 3708 4.100498 ACGGAGGGAATATTCGTTACATGT 59.900 41.667 9.32 2.69 0.00 3.21
3354 3709 4.447724 CGGAGGGAATATTCGTTACATGTG 59.552 45.833 9.11 0.00 0.00 3.21
3355 3710 4.213482 GGAGGGAATATTCGTTACATGTGC 59.787 45.833 9.11 0.03 0.00 4.57
3356 3711 4.776349 AGGGAATATTCGTTACATGTGCA 58.224 39.130 9.11 0.00 0.00 4.57
3357 3712 5.189928 AGGGAATATTCGTTACATGTGCAA 58.810 37.500 9.11 0.00 0.00 4.08
3358 3713 5.650266 AGGGAATATTCGTTACATGTGCAAA 59.350 36.000 9.11 0.00 0.00 3.68
3359 3714 6.321181 AGGGAATATTCGTTACATGTGCAAAT 59.679 34.615 9.11 5.80 0.00 2.32
3360 3715 6.636850 GGGAATATTCGTTACATGTGCAAATC 59.363 38.462 9.11 0.00 0.00 2.17
3361 3716 6.636850 GGAATATTCGTTACATGTGCAAATCC 59.363 38.462 9.11 1.28 0.00 3.01
3362 3717 6.942532 ATATTCGTTACATGTGCAAATCCT 57.057 33.333 9.11 0.00 0.00 3.24
3363 3718 4.678509 TTCGTTACATGTGCAAATCCTC 57.321 40.909 9.11 0.00 0.00 3.71
3364 3719 3.669536 TCGTTACATGTGCAAATCCTCA 58.330 40.909 9.11 0.00 0.00 3.86
3365 3720 4.260985 TCGTTACATGTGCAAATCCTCAT 58.739 39.130 9.11 0.00 0.00 2.90
3366 3721 5.423886 TCGTTACATGTGCAAATCCTCATA 58.576 37.500 9.11 0.00 0.00 2.15
3367 3722 6.054941 TCGTTACATGTGCAAATCCTCATAT 58.945 36.000 9.11 0.00 0.00 1.78
3368 3723 6.202762 TCGTTACATGTGCAAATCCTCATATC 59.797 38.462 9.11 0.00 0.00 1.63
3369 3724 6.018016 CGTTACATGTGCAAATCCTCATATCA 60.018 38.462 9.11 0.00 0.00 2.15
3370 3725 7.308169 CGTTACATGTGCAAATCCTCATATCAT 60.308 37.037 9.11 0.00 0.00 2.45
3371 3726 6.327279 ACATGTGCAAATCCTCATATCATG 57.673 37.500 0.00 0.00 36.99 3.07
3372 3727 5.243060 ACATGTGCAAATCCTCATATCATGG 59.757 40.000 0.00 0.00 35.81 3.66
3373 3728 4.795469 TGTGCAAATCCTCATATCATGGT 58.205 39.130 0.00 0.00 0.00 3.55
3374 3729 5.939447 TGTGCAAATCCTCATATCATGGTA 58.061 37.500 0.00 0.00 0.00 3.25
3375 3730 5.999600 TGTGCAAATCCTCATATCATGGTAG 59.000 40.000 0.00 0.00 0.00 3.18
3376 3731 6.183361 TGTGCAAATCCTCATATCATGGTAGA 60.183 38.462 0.00 0.00 0.00 2.59
3377 3732 6.712095 GTGCAAATCCTCATATCATGGTAGAA 59.288 38.462 0.00 0.00 0.00 2.10
3441 3796 6.456853 GCTTCATAATGAACACTGTATTCGCA 60.457 38.462 0.00 0.00 32.21 5.10
3647 4002 7.556844 CAGGTTAGATATCCACAACAACTAGT 58.443 38.462 0.00 0.00 0.00 2.57
3736 4101 9.035890 TGATACTGCTAGCCTACATAATATGTT 57.964 33.333 13.29 0.00 41.63 2.71
3764 4129 0.602905 AGAAACTGCGGTGCTGGTAC 60.603 55.000 0.00 0.00 0.00 3.34
3800 4165 6.379988 TGCTCACTTAGAAACTTTTTCCCTTT 59.620 34.615 0.00 0.00 0.00 3.11
3833 4198 2.604614 GGTGCAGTTTGCCGTTTAAGAG 60.605 50.000 0.00 0.00 44.23 2.85
3848 4213 1.939980 AAGAGCTACTCCCTCCGTTT 58.060 50.000 0.00 0.00 0.00 3.60
3856 4221 5.839606 AGCTACTCCCTCCGTTTCTAAATAT 59.160 40.000 0.00 0.00 0.00 1.28
3857 4222 5.927115 GCTACTCCCTCCGTTTCTAAATATG 59.073 44.000 0.00 0.00 0.00 1.78
3859 4224 6.555463 ACTCCCTCCGTTTCTAAATATGAA 57.445 37.500 0.00 0.00 0.00 2.57
3860 4225 6.346896 ACTCCCTCCGTTTCTAAATATGAAC 58.653 40.000 0.00 0.00 0.00 3.18
3862 4227 5.427481 TCCCTCCGTTTCTAAATATGAACCT 59.573 40.000 0.00 0.00 0.00 3.50
3863 4228 6.069847 TCCCTCCGTTTCTAAATATGAACCTT 60.070 38.462 0.00 0.00 0.00 3.50
3898 4263 9.778741 ATTTCAATATGAACTACATACGGATGT 57.221 29.630 19.12 19.12 43.12 3.06
3908 4273 9.831737 GAACTACATACGGATGTATATAAACGT 57.168 33.333 20.64 10.41 45.42 3.99
3927 4292 7.878477 AAACGTATTTTAGAGTGTCGATTCA 57.122 32.000 0.00 0.00 0.00 2.57
3928 4293 6.866179 ACGTATTTTAGAGTGTCGATTCAC 57.134 37.500 0.00 0.00 38.46 3.18
3937 4302 4.410492 AGTGTCGATTCACTCATTTTGC 57.590 40.909 2.98 0.00 44.07 3.68
3941 4306 2.672874 TCGATTCACTCATTTTGCTCCG 59.327 45.455 0.00 0.00 0.00 4.63
3958 4325 3.611057 GCTCCGTATGTAGTCCGTATTGG 60.611 52.174 0.00 0.00 40.09 3.16
4016 4383 6.539103 GGGAGTACATCTGAAATTTACCTGTC 59.461 42.308 0.00 0.00 0.00 3.51
4024 4391 9.971922 CATCTGAAATTTACCTGTCTTTTCTTT 57.028 29.630 0.00 0.00 0.00 2.52
4057 4424 6.401394 TGTGAGAGTTGACATAGATTCTTGG 58.599 40.000 0.00 0.00 0.00 3.61
4080 4447 4.199310 GGCAAGTATCTGCTATTGAACCA 58.801 43.478 0.00 0.00 42.25 3.67
4105 4474 2.033141 TGCTCTTGGGCTGTGCTC 59.967 61.111 0.00 0.00 0.00 4.26
4106 4475 2.033141 GCTCTTGGGCTGTGCTCA 59.967 61.111 0.00 0.00 37.19 4.26
4107 4476 2.331132 GCTCTTGGGCTGTGCTCAC 61.331 63.158 0.00 0.00 39.49 3.51
4108 4477 1.374190 CTCTTGGGCTGTGCTCACT 59.626 57.895 1.47 0.00 39.49 3.41
4109 4478 0.954449 CTCTTGGGCTGTGCTCACTG 60.954 60.000 1.47 2.29 39.49 3.66
4110 4479 1.970114 CTTGGGCTGTGCTCACTGG 60.970 63.158 8.59 0.57 39.49 4.00
4111 4480 2.401699 CTTGGGCTGTGCTCACTGGA 62.402 60.000 8.59 0.00 39.49 3.86
4112 4481 1.993701 TTGGGCTGTGCTCACTGGAA 61.994 55.000 8.59 0.00 39.49 3.53
4113 4482 1.228245 GGGCTGTGCTCACTGGAAA 60.228 57.895 8.59 0.00 0.00 3.13
4114 4483 0.823356 GGGCTGTGCTCACTGGAAAA 60.823 55.000 8.59 0.00 0.00 2.29
4115 4484 1.032014 GGCTGTGCTCACTGGAAAAA 58.968 50.000 8.59 0.00 0.00 1.94
4133 4502 3.729526 AAAATAGCGCGCTATAGCATG 57.270 42.857 43.81 15.86 42.21 4.06
4134 4503 1.002366 AATAGCGCGCTATAGCATGC 58.998 50.000 43.81 23.81 42.21 4.06
4135 4504 2.341543 AGCGCGCTATAGCATGCT 59.658 55.556 35.79 26.57 43.41 3.79
4136 4505 0.733909 TAGCGCGCTATAGCATGCTG 60.734 55.000 34.05 22.05 46.22 4.41
4137 4506 2.023771 GCGCGCTATAGCATGCTGA 61.024 57.895 30.42 16.50 42.21 4.26
4138 4507 1.953353 GCGCGCTATAGCATGCTGAG 61.953 60.000 30.42 25.12 42.21 3.35
4139 4508 0.387750 CGCGCTATAGCATGCTGAGA 60.388 55.000 30.42 11.15 42.21 3.27
4140 4509 1.788258 GCGCTATAGCATGCTGAGAA 58.212 50.000 30.42 10.73 42.21 2.87
4141 4510 2.344950 GCGCTATAGCATGCTGAGAAT 58.655 47.619 30.42 17.50 42.21 2.40
4142 4511 2.740981 GCGCTATAGCATGCTGAGAATT 59.259 45.455 30.42 4.34 42.21 2.17
4143 4512 3.424565 GCGCTATAGCATGCTGAGAATTG 60.425 47.826 30.42 16.45 42.21 2.32
4144 4513 3.124806 CGCTATAGCATGCTGAGAATTGG 59.875 47.826 30.42 12.17 42.21 3.16
4145 4514 3.119919 GCTATAGCATGCTGAGAATTGGC 60.120 47.826 30.42 17.26 41.59 4.52
4146 4515 2.723322 TAGCATGCTGAGAATTGGCT 57.277 45.000 30.42 1.31 0.00 4.75
4147 4516 1.390565 AGCATGCTGAGAATTGGCTC 58.609 50.000 21.98 0.00 35.46 4.70
4148 4517 0.029035 GCATGCTGAGAATTGGCTCG 59.971 55.000 11.37 0.00 37.73 5.03
4149 4518 0.029035 CATGCTGAGAATTGGCTCGC 59.971 55.000 0.00 0.00 37.73 5.03
4150 4519 0.107312 ATGCTGAGAATTGGCTCGCT 60.107 50.000 0.00 0.00 37.73 4.93
4151 4520 0.536724 TGCTGAGAATTGGCTCGCTA 59.463 50.000 0.00 0.00 37.73 4.26
4152 4521 1.066215 TGCTGAGAATTGGCTCGCTAA 60.066 47.619 0.00 0.00 37.73 3.09
4153 4522 2.009774 GCTGAGAATTGGCTCGCTAAA 58.990 47.619 0.00 0.00 37.73 1.85
4154 4523 2.615912 GCTGAGAATTGGCTCGCTAAAT 59.384 45.455 0.00 0.00 37.73 1.40
4155 4524 3.809832 GCTGAGAATTGGCTCGCTAAATA 59.190 43.478 0.00 0.00 37.73 1.40
4156 4525 4.273480 GCTGAGAATTGGCTCGCTAAATAA 59.727 41.667 0.00 0.00 37.73 1.40
4157 4526 5.220854 GCTGAGAATTGGCTCGCTAAATAAA 60.221 40.000 0.00 0.00 37.73 1.40
4158 4527 6.514048 GCTGAGAATTGGCTCGCTAAATAAAT 60.514 38.462 0.00 0.00 37.73 1.40
4159 4528 7.333528 TGAGAATTGGCTCGCTAAATAAATT 57.666 32.000 0.00 0.00 37.73 1.82
4160 4529 8.445275 TGAGAATTGGCTCGCTAAATAAATTA 57.555 30.769 0.00 0.00 37.73 1.40
4161 4530 8.559536 TGAGAATTGGCTCGCTAAATAAATTAG 58.440 33.333 0.00 0.00 37.46 1.73
4162 4531 8.451908 AGAATTGGCTCGCTAAATAAATTAGT 57.548 30.769 0.00 0.00 42.58 2.24
4163 4532 9.555727 AGAATTGGCTCGCTAAATAAATTAGTA 57.444 29.630 0.00 0.00 42.58 1.82
4167 4536 9.767228 TTGGCTCGCTAAATAAATTAGTATACA 57.233 29.630 5.50 0.00 42.58 2.29
4168 4537 9.767228 TGGCTCGCTAAATAAATTAGTATACAA 57.233 29.630 5.50 0.00 42.58 2.41
4177 4546 9.609346 AAATAAATTAGTATACAACACCTCGCT 57.391 29.630 5.50 0.00 0.00 4.93
4182 4551 9.909644 AATTAGTATACAACACCTCGCTAATAG 57.090 33.333 5.50 0.00 30.61 1.73
4183 4552 5.770417 AGTATACAACACCTCGCTAATAGC 58.230 41.667 5.50 1.41 38.02 2.97
4184 4553 4.665833 ATACAACACCTCGCTAATAGCA 57.334 40.909 13.15 0.00 42.58 3.49
4185 4554 2.618053 ACAACACCTCGCTAATAGCAC 58.382 47.619 13.15 0.00 42.58 4.40
4186 4555 2.028476 ACAACACCTCGCTAATAGCACA 60.028 45.455 13.15 0.00 42.58 4.57
4187 4556 2.295253 ACACCTCGCTAATAGCACAC 57.705 50.000 13.15 0.00 42.58 3.82
4188 4557 1.825474 ACACCTCGCTAATAGCACACT 59.175 47.619 13.15 0.00 42.58 3.55
4189 4558 3.021695 ACACCTCGCTAATAGCACACTA 58.978 45.455 13.15 0.00 42.58 2.74
4190 4559 3.637229 ACACCTCGCTAATAGCACACTAT 59.363 43.478 13.15 0.00 42.58 2.12
4191 4560 4.825634 ACACCTCGCTAATAGCACACTATA 59.174 41.667 13.15 0.00 42.58 1.31
4192 4561 5.048643 ACACCTCGCTAATAGCACACTATAG 60.049 44.000 13.15 0.00 42.58 1.31
4193 4562 4.082679 ACCTCGCTAATAGCACACTATAGC 60.083 45.833 13.15 0.00 42.58 2.97
4194 4563 4.079665 TCGCTAATAGCACACTATAGCG 57.920 45.455 16.73 16.73 46.43 4.26
4195 4564 2.594654 CGCTAATAGCACACTATAGCGC 59.405 50.000 13.15 0.00 43.52 5.92
4196 4565 2.594654 GCTAATAGCACACTATAGCGCG 59.405 50.000 7.49 0.00 41.89 6.86
4197 4566 3.669824 GCTAATAGCACACTATAGCGCGA 60.670 47.826 12.10 0.00 41.89 5.87
4198 4567 3.577649 AATAGCACACTATAGCGCGAT 57.422 42.857 12.10 5.99 38.18 4.58
4199 4568 4.696899 AATAGCACACTATAGCGCGATA 57.303 40.909 12.10 9.16 38.18 2.92
4200 4569 4.902443 ATAGCACACTATAGCGCGATAT 57.098 40.909 21.68 21.68 37.33 1.63
4201 4570 6.373186 AATAGCACACTATAGCGCGATATA 57.627 37.500 21.59 21.59 38.18 0.86
4202 4571 4.280101 AGCACACTATAGCGCGATATAG 57.720 45.455 36.80 36.80 40.26 1.31
4203 4572 2.784380 GCACACTATAGCGCGATATAGC 59.216 50.000 37.80 26.61 38.70 2.97
4204 4573 3.730963 GCACACTATAGCGCGATATAGCA 60.731 47.826 37.80 16.39 38.70 3.49
4205 4574 4.602006 CACACTATAGCGCGATATAGCAT 58.398 43.478 37.80 27.70 38.70 3.79
4206 4575 4.439123 CACACTATAGCGCGATATAGCATG 59.561 45.833 37.80 32.03 38.70 4.06
4207 4576 3.423536 CACTATAGCGCGATATAGCATGC 59.576 47.826 37.80 10.51 38.70 4.06
4208 4577 2.879002 ATAGCGCGATATAGCATGCT 57.121 45.000 25.99 25.99 37.52 3.79
4209 4578 3.990318 ATAGCGCGATATAGCATGCTA 57.010 42.857 28.72 28.72 39.25 3.49
4210 4579 2.654749 AGCGCGATATAGCATGCTAA 57.345 45.000 30.06 19.16 33.28 3.09
4211 4580 2.263077 AGCGCGATATAGCATGCTAAC 58.737 47.619 30.06 21.36 33.28 2.34
4212 4581 1.992667 GCGCGATATAGCATGCTAACA 59.007 47.619 30.06 20.82 36.85 2.41
4213 4582 2.028523 GCGCGATATAGCATGCTAACAG 59.971 50.000 30.06 20.95 36.85 3.16
4214 4583 2.028523 CGCGATATAGCATGCTAACAGC 59.971 50.000 30.06 26.93 38.28 4.40
4215 4584 2.028523 GCGATATAGCATGCTAACAGCG 59.971 50.000 30.44 30.44 39.70 5.18
4216 4585 3.245797 CGATATAGCATGCTAACAGCGT 58.754 45.455 30.06 15.59 46.26 5.07
4217 4586 4.412207 CGATATAGCATGCTAACAGCGTA 58.588 43.478 30.06 17.21 46.26 4.42
4218 4587 4.263209 CGATATAGCATGCTAACAGCGTAC 59.737 45.833 30.06 14.24 46.26 3.67
4219 4588 3.735237 ATAGCATGCTAACAGCGTACT 57.265 42.857 30.06 8.63 46.26 2.73
4220 4589 2.386661 AGCATGCTAACAGCGTACTT 57.613 45.000 21.21 0.00 46.26 2.24
4221 4590 2.699954 AGCATGCTAACAGCGTACTTT 58.300 42.857 21.21 0.00 46.26 2.66
4222 4591 2.416547 AGCATGCTAACAGCGTACTTTG 59.583 45.455 21.21 0.00 46.26 2.77
4223 4592 2.415168 GCATGCTAACAGCGTACTTTGA 59.585 45.455 11.37 0.00 46.26 2.69
4224 4593 3.484229 GCATGCTAACAGCGTACTTTGAG 60.484 47.826 11.37 0.00 46.26 3.02
4225 4594 2.683968 TGCTAACAGCGTACTTTGAGG 58.316 47.619 1.08 0.00 46.26 3.86
4226 4595 1.393883 GCTAACAGCGTACTTTGAGGC 59.606 52.381 1.08 0.00 0.00 4.70
4227 4596 2.000447 CTAACAGCGTACTTTGAGGCC 59.000 52.381 0.00 0.00 0.00 5.19
4228 4597 0.949105 AACAGCGTACTTTGAGGCCG 60.949 55.000 0.00 0.00 0.00 6.13
4229 4598 2.100631 CAGCGTACTTTGAGGCCGG 61.101 63.158 0.00 0.00 0.00 6.13
4230 4599 3.497031 GCGTACTTTGAGGCCGGC 61.497 66.667 21.18 21.18 0.00 6.13
4231 4600 3.186047 CGTACTTTGAGGCCGGCG 61.186 66.667 22.54 7.92 0.00 6.46
4232 4601 3.497031 GTACTTTGAGGCCGGCGC 61.497 66.667 22.54 15.96 0.00 6.53
4233 4602 3.702048 TACTTTGAGGCCGGCGCT 61.702 61.111 22.54 18.95 34.44 5.92
4234 4603 2.352821 TACTTTGAGGCCGGCGCTA 61.353 57.895 22.54 9.28 34.44 4.26
4235 4604 1.682451 TACTTTGAGGCCGGCGCTAT 61.682 55.000 22.54 6.00 34.44 2.97
4236 4605 1.819632 CTTTGAGGCCGGCGCTATT 60.820 57.895 22.54 2.67 34.44 1.73
4237 4606 1.376609 CTTTGAGGCCGGCGCTATTT 61.377 55.000 22.54 0.60 34.44 1.40
4238 4607 0.963355 TTTGAGGCCGGCGCTATTTT 60.963 50.000 22.54 0.00 34.44 1.82
4239 4608 1.653094 TTGAGGCCGGCGCTATTTTG 61.653 55.000 22.54 0.00 34.44 2.44
4240 4609 2.045340 AGGCCGGCGCTATTTTGT 60.045 55.556 22.54 0.00 34.44 2.83
4241 4610 1.654023 GAGGCCGGCGCTATTTTGTT 61.654 55.000 22.54 0.00 34.44 2.83
4242 4611 1.516169 GGCCGGCGCTATTTTGTTG 60.516 57.895 22.54 0.00 34.44 3.33
4243 4612 1.504446 GCCGGCGCTATTTTGTTGA 59.496 52.632 12.58 0.00 0.00 3.18
4244 4613 0.109504 GCCGGCGCTATTTTGTTGAA 60.110 50.000 12.58 0.00 0.00 2.69
4245 4614 1.895051 CCGGCGCTATTTTGTTGAAG 58.105 50.000 7.64 0.00 0.00 3.02
4246 4615 1.199097 CCGGCGCTATTTTGTTGAAGT 59.801 47.619 7.64 0.00 0.00 3.01
4247 4616 2.241722 CGGCGCTATTTTGTTGAAGTG 58.758 47.619 7.64 0.00 0.00 3.16
4248 4617 1.985684 GGCGCTATTTTGTTGAAGTGC 59.014 47.619 7.64 0.00 43.12 4.40
4249 4618 1.643810 GCGCTATTTTGTTGAAGTGCG 59.356 47.619 0.00 0.00 44.10 5.34
4250 4619 1.643810 CGCTATTTTGTTGAAGTGCGC 59.356 47.619 0.00 0.00 35.98 6.09
4251 4620 2.665519 CGCTATTTTGTTGAAGTGCGCT 60.666 45.455 9.73 0.00 35.98 5.92
4252 4621 2.658325 GCTATTTTGTTGAAGTGCGCTG 59.342 45.455 9.73 0.00 0.00 5.18
4253 4622 2.869233 ATTTTGTTGAAGTGCGCTGT 57.131 40.000 9.73 0.00 0.00 4.40
4254 4623 2.645730 TTTTGTTGAAGTGCGCTGTT 57.354 40.000 9.73 0.79 0.00 3.16
4255 4624 2.645730 TTTGTTGAAGTGCGCTGTTT 57.354 40.000 9.73 0.00 0.00 2.83
4256 4625 2.645730 TTGTTGAAGTGCGCTGTTTT 57.354 40.000 9.73 0.00 0.00 2.43
4257 4626 2.645730 TGTTGAAGTGCGCTGTTTTT 57.354 40.000 9.73 0.00 0.00 1.94
4306 4675 0.682855 CCAATACGGCCACCCATGTT 60.683 55.000 2.24 0.00 0.00 2.71
4442 4811 1.222113 GGAGCTCCAACCAGGCTAC 59.778 63.158 28.43 0.00 36.37 3.58
4475 4844 0.810031 ACAACCTCGGCGATGCATAC 60.810 55.000 11.27 0.00 0.00 2.39
4604 4973 1.386550 GGGCATGTACAAGGGGGTT 59.613 57.895 0.00 0.00 0.00 4.11
4619 4988 1.364901 GGTTCCGGTGAAGACGACA 59.635 57.895 0.00 0.00 0.00 4.35
4667 5049 2.665519 CGAATTCGTGCCTCAGTTTTGG 60.666 50.000 19.67 0.00 34.11 3.28
4677 5075 2.808543 CCTCAGTTTTGGACAGTAGCAC 59.191 50.000 0.00 0.00 0.00 4.40
4715 5114 6.483307 TGAGAAGTTGTATGTAGCATATTGGC 59.517 38.462 0.00 0.00 0.00 4.52
4717 5116 4.065088 AGTTGTATGTAGCATATTGGCGG 58.935 43.478 0.00 0.00 39.27 6.13
4744 5153 3.319755 TCCGTCCGTTGTAGAATGTTTC 58.680 45.455 0.00 0.00 0.00 2.78
4751 5160 5.119588 TCCGTTGTAGAATGTTTCGAATGTC 59.880 40.000 0.00 0.00 34.02 3.06
4755 5164 3.729526 AGAATGTTTCGAATGTCAGCG 57.270 42.857 0.00 0.00 34.02 5.18
4761 5170 2.765108 TTCGAATGTCAGCGCAAAAA 57.235 40.000 11.47 0.00 0.00 1.94
4762 5171 2.987413 TCGAATGTCAGCGCAAAAAT 57.013 40.000 11.47 0.00 0.00 1.82
4764 5173 4.411993 TCGAATGTCAGCGCAAAAATAA 57.588 36.364 11.47 0.00 0.00 1.40
4765 5174 4.980590 TCGAATGTCAGCGCAAAAATAAT 58.019 34.783 11.47 0.00 0.00 1.28
4766 5175 6.112994 TCGAATGTCAGCGCAAAAATAATA 57.887 33.333 11.47 0.00 0.00 0.98
4767 5176 6.724263 TCGAATGTCAGCGCAAAAATAATAT 58.276 32.000 11.47 0.00 0.00 1.28
4800 5209 0.889186 TTTTGAGGTCCGCTCCAAGC 60.889 55.000 0.00 0.00 38.02 4.01
4808 5217 1.224592 CCGCTCCAAGCCCATAACT 59.775 57.895 0.00 0.00 38.18 2.24
4812 6608 1.134098 GCTCCAAGCCCATAACTGCTA 60.134 52.381 0.00 0.00 36.66 3.49
4813 6609 2.487986 GCTCCAAGCCCATAACTGCTAT 60.488 50.000 0.00 0.00 36.66 2.97
4869 6746 5.705609 TCGATAGTGTATCAGCTTATGCA 57.294 39.130 3.16 0.00 38.60 3.96
4870 6747 5.461526 TCGATAGTGTATCAGCTTATGCAC 58.538 41.667 18.20 18.20 41.25 4.57
4871 6748 4.623167 CGATAGTGTATCAGCTTATGCACC 59.377 45.833 21.09 8.89 41.70 5.01
4872 6749 3.912496 AGTGTATCAGCTTATGCACCA 57.088 42.857 21.09 0.00 41.70 4.17
4873 6750 3.535561 AGTGTATCAGCTTATGCACCAC 58.464 45.455 21.09 8.81 41.70 4.16
4876 6753 3.689161 TGTATCAGCTTATGCACCACAAC 59.311 43.478 3.16 0.00 42.74 3.32
4877 6754 1.155889 TCAGCTTATGCACCACAACG 58.844 50.000 3.16 0.00 42.74 4.10
4878 6755 0.168788 CAGCTTATGCACCACAACGG 59.831 55.000 3.16 0.00 42.74 4.44
4901 6778 2.627699 GAGGTGATCAAGTTTTGCCCAA 59.372 45.455 0.00 0.00 0.00 4.12
4905 6782 4.452114 GGTGATCAAGTTTTGCCCAATTTC 59.548 41.667 0.00 0.00 0.00 2.17
4908 6785 6.038050 GTGATCAAGTTTTGCCCAATTTCAAA 59.962 34.615 0.00 0.00 0.00 2.69
4920 6797 3.555586 CCAATTTCAAAGCCCCTTCACTG 60.556 47.826 0.00 0.00 0.00 3.66
4928 6805 0.033109 GCCCCTTCACTGCCCTTATT 60.033 55.000 0.00 0.00 0.00 1.40
4930 6807 1.005924 CCCCTTCACTGCCCTTATTGT 59.994 52.381 0.00 0.00 0.00 2.71
4955 6832 2.139323 TCGAAGGTAGGCTAGCTCAA 57.861 50.000 25.07 11.72 35.05 3.02
4973 6850 4.202441 CTCAAGACGAATCCCCATTTGAT 58.798 43.478 0.00 0.00 0.00 2.57
4978 6855 4.399303 AGACGAATCCCCATTTGATTCAAC 59.601 41.667 12.05 6.22 45.37 3.18
4985 6862 3.505680 CCCCATTTGATTCAACGAAGTCA 59.494 43.478 0.00 0.00 45.00 3.41
4987 6864 5.335127 CCCATTTGATTCAACGAAGTCATC 58.665 41.667 0.00 0.00 45.00 2.92
4991 6868 6.618287 TTTGATTCAACGAAGTCATCAACT 57.382 33.333 0.00 0.00 45.00 3.16
5003 6880 6.591834 CGAAGTCATCAACTAGTCAGGAATTT 59.408 38.462 0.00 0.00 37.17 1.82
5016 6893 6.653989 AGTCAGGAATTTCAAGATACCGAAT 58.346 36.000 0.00 0.00 0.00 3.34
5027 6904 3.104512 AGATACCGAATGTTGAGACCCA 58.895 45.455 0.00 0.00 0.00 4.51
5028 6905 3.133003 AGATACCGAATGTTGAGACCCAG 59.867 47.826 0.00 0.00 0.00 4.45
5071 6976 3.439440 AAAAACTGAGCCTCCCCAC 57.561 52.632 0.00 0.00 0.00 4.61
5099 7004 1.474143 GGAGCAACCAGGAGTAGATGC 60.474 57.143 0.00 0.00 38.79 3.91
5133 7038 2.893637 ACGCCTGTGAATCTGTGATAC 58.106 47.619 0.00 0.00 0.00 2.24
5145 7050 6.266330 TGAATCTGTGATACCATCAGGAGTAG 59.734 42.308 0.00 0.00 40.53 2.57
5167 7072 0.396811 AAGACCAACCACGAGGGAAG 59.603 55.000 3.29 0.00 41.15 3.46
5186 7091 1.834263 AGCAGTAGAGAATTTCGCCCT 59.166 47.619 0.00 0.00 0.00 5.19
5194 7099 0.608130 GAATTTCGCCCTTGCCCTTT 59.392 50.000 0.00 0.00 0.00 3.11
5485 7390 3.255642 GCAGGTGCCTTGTCATCTTTAAA 59.744 43.478 0.00 0.00 34.31 1.52
5492 7397 5.407387 TGCCTTGTCATCTTTAAACGTCTAC 59.593 40.000 0.00 0.00 0.00 2.59
5498 7403 8.181487 TGTCATCTTTAAACGTCTACTAATGC 57.819 34.615 0.00 0.00 0.00 3.56
5580 7496 0.179129 CAAACATGGCCGGATTCTGC 60.179 55.000 5.05 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 9.642327 AATGTACAACGTGTATGACAAAGTATA 57.358 29.630 0.00 0.00 35.05 1.47
370 372 8.412608 TCAAAAATGCTTCGTACATTCAAAAA 57.587 26.923 0.00 0.00 36.74 1.94
371 373 7.993821 TCAAAAATGCTTCGTACATTCAAAA 57.006 28.000 0.00 0.00 36.74 2.44
372 374 7.704472 AGTTCAAAAATGCTTCGTACATTCAAA 59.296 29.630 0.00 0.00 36.74 2.69
373 375 7.199766 AGTTCAAAAATGCTTCGTACATTCAA 58.800 30.769 0.00 0.00 36.74 2.69
374 376 6.734137 AGTTCAAAAATGCTTCGTACATTCA 58.266 32.000 0.00 0.00 36.74 2.57
375 377 7.801315 TGTAGTTCAAAAATGCTTCGTACATTC 59.199 33.333 0.00 0.00 36.74 2.67
376 378 7.589954 GTGTAGTTCAAAAATGCTTCGTACATT 59.410 33.333 0.00 0.00 39.38 2.71
377 379 7.075741 GTGTAGTTCAAAAATGCTTCGTACAT 58.924 34.615 0.00 0.00 0.00 2.29
378 380 6.037281 TGTGTAGTTCAAAAATGCTTCGTACA 59.963 34.615 0.00 0.00 0.00 2.90
379 381 6.423862 TGTGTAGTTCAAAAATGCTTCGTAC 58.576 36.000 0.00 0.00 0.00 3.67
380 382 6.606234 TGTGTAGTTCAAAAATGCTTCGTA 57.394 33.333 0.00 0.00 0.00 3.43
381 383 5.493133 TGTGTAGTTCAAAAATGCTTCGT 57.507 34.783 0.00 0.00 0.00 3.85
382 384 6.804534 TTTGTGTAGTTCAAAAATGCTTCG 57.195 33.333 0.00 0.00 32.86 3.79
457 459 2.569404 GGGCCAATAAAAATGTCACCCA 59.431 45.455 4.39 0.00 34.82 4.51
459 461 2.569404 TGGGGCCAATAAAAATGTCACC 59.431 45.455 4.39 0.00 0.00 4.02
493 496 9.197694 TGTGTACCAAAAATGTTATTTATGTGC 57.802 29.630 0.00 0.00 0.00 4.57
501 504 9.638239 GTCAATCATGTGTACCAAAAATGTTAT 57.362 29.630 0.00 0.00 0.00 1.89
525 528 8.231304 ACGTGAATGAAAAATGATTGAATGTC 57.769 30.769 0.00 0.00 0.00 3.06
674 680 8.674607 CAGCATCACGGTAGTATATAGATTACA 58.325 37.037 2.93 0.00 0.00 2.41
675 681 7.644551 GCAGCATCACGGTAGTATATAGATTAC 59.355 40.741 0.00 0.00 0.00 1.89
676 682 7.556635 AGCAGCATCACGGTAGTATATAGATTA 59.443 37.037 0.00 0.00 0.00 1.75
679 685 5.254115 AGCAGCATCACGGTAGTATATAGA 58.746 41.667 0.00 0.00 0.00 1.98
680 686 5.568685 AGCAGCATCACGGTAGTATATAG 57.431 43.478 0.00 0.00 0.00 1.31
681 687 5.243060 ACAAGCAGCATCACGGTAGTATATA 59.757 40.000 0.00 0.00 0.00 0.86
683 689 3.383505 ACAAGCAGCATCACGGTAGTATA 59.616 43.478 0.00 0.00 0.00 1.47
684 690 2.168521 ACAAGCAGCATCACGGTAGTAT 59.831 45.455 0.00 0.00 0.00 2.12
685 691 1.548719 ACAAGCAGCATCACGGTAGTA 59.451 47.619 0.00 0.00 0.00 1.82
686 692 0.321671 ACAAGCAGCATCACGGTAGT 59.678 50.000 0.00 0.00 0.00 2.73
687 693 0.723414 CACAAGCAGCATCACGGTAG 59.277 55.000 0.00 0.00 0.00 3.18
688 694 0.673333 CCACAAGCAGCATCACGGTA 60.673 55.000 0.00 0.00 0.00 4.02
690 696 1.518056 AACCACAAGCAGCATCACGG 61.518 55.000 0.00 0.00 0.00 4.94
693 733 2.153645 CAGTAACCACAAGCAGCATCA 58.846 47.619 0.00 0.00 0.00 3.07
696 736 0.537143 CCCAGTAACCACAAGCAGCA 60.537 55.000 0.00 0.00 0.00 4.41
699 739 1.228429 GGCCCAGTAACCACAAGCA 60.228 57.895 0.00 0.00 0.00 3.91
703 743 4.338710 GCCGGCCCAGTAACCACA 62.339 66.667 18.11 0.00 0.00 4.17
707 747 2.203029 GCTAGCCGGCCCAGTAAC 60.203 66.667 26.15 4.40 0.00 2.50
742 782 4.874977 GACGCCTAGGCACGGCTC 62.875 72.222 32.47 14.33 45.37 4.70
762 802 2.589890 CGGCTATGTGACGCTTACC 58.410 57.895 0.00 0.00 41.83 2.85
957 1010 4.379243 CCGTGGTGGCTCGCTTCT 62.379 66.667 0.00 0.00 0.00 2.85
1176 1231 1.598962 GCCAGTGCAGCAGAGTGAA 60.599 57.895 0.00 0.00 37.47 3.18
1177 1232 2.031616 GCCAGTGCAGCAGAGTGA 59.968 61.111 0.00 0.00 37.47 3.41
1179 1234 2.498291 CTACGCCAGTGCAGCAGAGT 62.498 60.000 0.00 0.00 37.32 3.24
1216 1271 4.881850 AGATGTCGGATTTGGTAATGGAAC 59.118 41.667 0.00 0.00 0.00 3.62
1220 1275 6.194796 ACAAAGATGTCGGATTTGGTAATG 57.805 37.500 6.72 0.00 38.06 1.90
1381 1702 0.535797 GGAACGGAGGGAGTACTTGG 59.464 60.000 0.00 0.00 0.00 3.61
1472 1793 8.362639 ACGGTTGAGTCTAGTTTATGTTTAAGA 58.637 33.333 0.00 0.00 0.00 2.10
1476 1797 5.178809 GCACGGTTGAGTCTAGTTTATGTTT 59.821 40.000 0.00 0.00 0.00 2.83
1503 1824 6.201226 TGTGTGAACAAACAATAAGCTCAA 57.799 33.333 0.00 0.00 0.00 3.02
1705 2027 7.062605 GTCCAGAAACAATAAACGTTCGAGATA 59.937 37.037 0.00 0.00 0.00 1.98
1719 2041 7.759433 CAGTAAAAACAACAGTCCAGAAACAAT 59.241 33.333 0.00 0.00 0.00 2.71
1759 2081 3.499737 GTGGAAGGCGGCACATCG 61.500 66.667 13.08 0.00 0.00 3.84
1769 2091 2.230660 GGAAGTTTCTGGTGTGGAAGG 58.769 52.381 0.00 0.00 0.00 3.46
1773 2095 2.629002 CCGGAAGTTTCTGGTGTGG 58.371 57.895 10.93 0.00 46.49 4.17
1882 2204 0.039165 TAGACTGTGCTGACTGTGCG 60.039 55.000 0.00 0.00 34.62 5.34
2135 2466 2.357154 GGGGAACTATGTTGATGCAGGT 60.357 50.000 0.00 0.00 0.00 4.00
2136 2467 2.092212 AGGGGAACTATGTTGATGCAGG 60.092 50.000 0.00 0.00 0.00 4.85
2143 2474 5.513788 CCCAGATATCAGGGGAACTATGTTG 60.514 48.000 22.68 0.00 45.08 3.33
2176 2507 0.108615 AGAACCAAGATCGCTGGTCG 60.109 55.000 19.26 0.00 34.39 4.79
2204 2547 3.066342 CCTTGTGATCCATGACAAGCATC 59.934 47.826 15.96 0.55 46.26 3.91
2222 2565 1.062121 TCCTCATCCCTCTACCCCTTG 60.062 57.143 0.00 0.00 0.00 3.61
2223 2566 1.330155 TCCTCATCCCTCTACCCCTT 58.670 55.000 0.00 0.00 0.00 3.95
2224 2567 1.435168 GATCCTCATCCCTCTACCCCT 59.565 57.143 0.00 0.00 0.00 4.79
2244 2587 3.117550 TCTCTCTTCCCTCCTCTCATCTG 60.118 52.174 0.00 0.00 0.00 2.90
2260 2603 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2261 2604 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
2262 2605 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
2263 2606 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
2264 2607 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
2265 2608 3.494048 CCTGCTCTCTCTCTCTCTCTCTC 60.494 56.522 0.00 0.00 0.00 3.20
2266 2609 2.437281 CCTGCTCTCTCTCTCTCTCTCT 59.563 54.545 0.00 0.00 0.00 3.10
2267 2610 2.171448 ACCTGCTCTCTCTCTCTCTCTC 59.829 54.545 0.00 0.00 0.00 3.20
2268 2611 2.200081 ACCTGCTCTCTCTCTCTCTCT 58.800 52.381 0.00 0.00 0.00 3.10
2291 2634 2.159382 GCCAGCAGCAACTAAGGTTAA 58.841 47.619 0.00 0.00 42.97 2.01
2341 2684 0.835941 AGAGGCATCACTGATGGGAC 59.164 55.000 18.74 4.29 40.10 4.46
2362 2705 2.045536 CCAAGCCTGCTGAGGTCC 60.046 66.667 0.00 0.00 42.15 4.46
2364 2707 2.433446 CACCAAGCCTGCTGAGGT 59.567 61.111 9.90 9.90 42.15 3.85
2387 2730 3.371102 TGTACCTATCGCTCAGCAATC 57.629 47.619 0.00 0.00 0.00 2.67
2397 2740 1.754803 TGCACCCTCTTGTACCTATCG 59.245 52.381 0.00 0.00 0.00 2.92
2403 2746 1.348036 ACTTCCTGCACCCTCTTGTAC 59.652 52.381 0.00 0.00 0.00 2.90
2417 2760 0.470766 TGCAACCGGTGTTACTTCCT 59.529 50.000 8.52 0.00 32.09 3.36
2422 2765 1.199097 CCAGATTGCAACCGGTGTTAC 59.801 52.381 8.52 0.00 32.09 2.50
2423 2766 1.072489 TCCAGATTGCAACCGGTGTTA 59.928 47.619 8.52 0.00 32.09 2.41
2429 2772 8.647143 AATAATAAAAATCCAGATTGCAACCG 57.353 30.769 0.00 0.00 0.00 4.44
2497 2840 4.047822 GGAGTAATCTTGCTCGATGACAG 58.952 47.826 6.21 0.00 40.30 3.51
2504 2847 3.688553 GGGGGAGTAATCTTGCTCG 57.311 57.895 2.58 0.00 40.30 5.03
2531 2874 6.093633 GGTAAGTGTGTTATTAAAGGCAGGAG 59.906 42.308 0.00 0.00 0.00 3.69
2532 2875 5.941647 GGTAAGTGTGTTATTAAAGGCAGGA 59.058 40.000 0.00 0.00 0.00 3.86
2533 2876 5.124936 GGGTAAGTGTGTTATTAAAGGCAGG 59.875 44.000 0.00 0.00 0.00 4.85
2534 2877 5.708230 TGGGTAAGTGTGTTATTAAAGGCAG 59.292 40.000 0.00 0.00 0.00 4.85
2535 2878 5.632118 TGGGTAAGTGTGTTATTAAAGGCA 58.368 37.500 0.00 0.00 0.00 4.75
2536 2879 6.384224 GTTGGGTAAGTGTGTTATTAAAGGC 58.616 40.000 0.00 0.00 0.00 4.35
2538 2881 6.490721 TGGGTTGGGTAAGTGTGTTATTAAAG 59.509 38.462 0.00 0.00 0.00 1.85
2540 2883 5.769162 GTGGGTTGGGTAAGTGTGTTATTAA 59.231 40.000 0.00 0.00 0.00 1.40
2541 2884 5.163120 TGTGGGTTGGGTAAGTGTGTTATTA 60.163 40.000 0.00 0.00 0.00 0.98
2542 2885 4.146564 GTGGGTTGGGTAAGTGTGTTATT 58.853 43.478 0.00 0.00 0.00 1.40
2543 2886 3.138653 TGTGGGTTGGGTAAGTGTGTTAT 59.861 43.478 0.00 0.00 0.00 1.89
2590 2933 2.767505 AGGAACTCATGTTGACCGTTC 58.232 47.619 0.00 0.00 36.39 3.95
2739 3084 7.275560 AGCAAACTACTGAAAATGTTGTCAAAC 59.724 33.333 0.00 0.00 36.78 2.93
2815 3162 2.512286 ATGCCCGCATGTCACTCG 60.512 61.111 0.33 0.00 35.03 4.18
2949 3299 1.805495 CGATGTCAGCCAGGTCATCAG 60.805 57.143 12.81 5.78 37.21 2.90
2998 3348 0.172803 CTGCAGAAAAGCTCCCATGC 59.827 55.000 8.42 6.91 34.99 4.06
3006 3356 4.848299 CGAGAACAAATACTGCAGAAAAGC 59.152 41.667 23.35 1.71 0.00 3.51
3342 3697 4.068599 TGAGGATTTGCACATGTAACGAA 58.931 39.130 0.00 0.20 0.00 3.85
3344 3699 4.621068 ATGAGGATTTGCACATGTAACG 57.379 40.909 0.00 0.00 0.00 3.18
3345 3700 7.263100 TGATATGAGGATTTGCACATGTAAC 57.737 36.000 0.00 0.00 0.00 2.50
3346 3701 7.040271 CCATGATATGAGGATTTGCACATGTAA 60.040 37.037 0.00 0.00 33.29 2.41
3347 3702 6.431852 CCATGATATGAGGATTTGCACATGTA 59.568 38.462 0.00 0.00 33.29 2.29
3348 3703 5.243060 CCATGATATGAGGATTTGCACATGT 59.757 40.000 0.00 0.00 33.29 3.21
3349 3704 5.243060 ACCATGATATGAGGATTTGCACATG 59.757 40.000 0.00 0.00 34.41 3.21
3350 3705 5.391256 ACCATGATATGAGGATTTGCACAT 58.609 37.500 0.00 0.00 0.00 3.21
3351 3706 4.795469 ACCATGATATGAGGATTTGCACA 58.205 39.130 0.00 0.00 0.00 4.57
3352 3707 6.233434 TCTACCATGATATGAGGATTTGCAC 58.767 40.000 0.00 0.00 0.00 4.57
3353 3708 6.438186 TCTACCATGATATGAGGATTTGCA 57.562 37.500 0.00 0.00 0.00 4.08
3354 3709 6.712095 TGTTCTACCATGATATGAGGATTTGC 59.288 38.462 0.00 0.00 0.00 3.68
3355 3710 7.389884 CCTGTTCTACCATGATATGAGGATTTG 59.610 40.741 0.00 0.00 0.00 2.32
3356 3711 7.072961 ACCTGTTCTACCATGATATGAGGATTT 59.927 37.037 0.00 0.00 0.00 2.17
3357 3712 6.560304 ACCTGTTCTACCATGATATGAGGATT 59.440 38.462 0.00 0.00 0.00 3.01
3358 3713 6.087456 ACCTGTTCTACCATGATATGAGGAT 58.913 40.000 0.00 0.00 0.00 3.24
3359 3714 5.467738 ACCTGTTCTACCATGATATGAGGA 58.532 41.667 0.00 0.00 0.00 3.71
3360 3715 5.815233 ACCTGTTCTACCATGATATGAGG 57.185 43.478 0.00 0.00 0.00 3.86
3361 3716 6.586344 ACAACCTGTTCTACCATGATATGAG 58.414 40.000 0.00 0.00 0.00 2.90
3362 3717 6.384015 AGACAACCTGTTCTACCATGATATGA 59.616 38.462 0.00 0.00 0.00 2.15
3363 3718 6.586344 AGACAACCTGTTCTACCATGATATG 58.414 40.000 0.00 0.00 0.00 1.78
3364 3719 6.814954 AGACAACCTGTTCTACCATGATAT 57.185 37.500 0.00 0.00 0.00 1.63
3365 3720 6.620877 AAGACAACCTGTTCTACCATGATA 57.379 37.500 0.00 0.00 0.00 2.15
3366 3721 5.505181 AAGACAACCTGTTCTACCATGAT 57.495 39.130 0.00 0.00 0.00 2.45
3367 3722 4.974645 AAGACAACCTGTTCTACCATGA 57.025 40.909 0.00 0.00 0.00 3.07
3368 3723 8.258007 TCTATAAAGACAACCTGTTCTACCATG 58.742 37.037 0.00 0.00 0.00 3.66
3369 3724 8.375493 TCTATAAAGACAACCTGTTCTACCAT 57.625 34.615 0.00 0.00 0.00 3.55
3370 3725 7.786046 TCTATAAAGACAACCTGTTCTACCA 57.214 36.000 0.00 0.00 0.00 3.25
3371 3726 8.312564 ACTTCTATAAAGACAACCTGTTCTACC 58.687 37.037 0.00 0.00 0.00 3.18
3372 3727 9.708092 AACTTCTATAAAGACAACCTGTTCTAC 57.292 33.333 0.00 0.00 0.00 2.59
3373 3728 9.924650 GAACTTCTATAAAGACAACCTGTTCTA 57.075 33.333 0.00 0.00 0.00 2.10
3374 3729 8.652290 AGAACTTCTATAAAGACAACCTGTTCT 58.348 33.333 0.00 0.00 35.78 3.01
3375 3730 8.834749 AGAACTTCTATAAAGACAACCTGTTC 57.165 34.615 0.00 0.00 0.00 3.18
3376 3731 9.274206 GAAGAACTTCTATAAAGACAACCTGTT 57.726 33.333 7.24 0.00 36.69 3.16
3377 3732 8.429641 TGAAGAACTTCTATAAAGACAACCTGT 58.570 33.333 14.31 0.00 40.14 4.00
3441 3796 8.931385 ATAATTAAGTATGGTTGACGTAACGT 57.069 30.769 0.00 0.00 45.10 3.99
3736 4101 3.242936 GCACCGCAGTTTCTAAGAACAAA 60.243 43.478 0.00 0.00 31.94 2.83
3751 4116 1.599518 CCAAAGTACCAGCACCGCA 60.600 57.895 0.00 0.00 0.00 5.69
3764 4129 7.335422 AGTTTCTAAGTGAGCATGATACCAAAG 59.665 37.037 0.00 0.00 0.00 2.77
3800 4165 4.393371 GCAAACTGCACCTTTGGTTAAAAA 59.607 37.500 12.10 0.00 44.26 1.94
3833 4198 3.881937 TTTAGAAACGGAGGGAGTAGC 57.118 47.619 0.00 0.00 0.00 3.58
3869 4234 9.692749 TCCGTATGTAGTTCATATTGAAATCTC 57.307 33.333 0.00 0.00 38.22 2.75
3903 4268 7.597743 AGTGAATCGACACTCTAAAATACGTTT 59.402 33.333 2.98 0.00 46.36 3.60
3917 4282 4.398247 GAGCAAAATGAGTGAATCGACAC 58.602 43.478 0.00 0.00 40.60 3.67
3918 4283 3.436704 GGAGCAAAATGAGTGAATCGACA 59.563 43.478 0.00 0.00 0.00 4.35
3919 4284 3.484229 CGGAGCAAAATGAGTGAATCGAC 60.484 47.826 0.00 0.00 0.00 4.20
3920 4285 2.672874 CGGAGCAAAATGAGTGAATCGA 59.327 45.455 0.00 0.00 0.00 3.59
3921 4286 2.416547 ACGGAGCAAAATGAGTGAATCG 59.583 45.455 0.00 0.00 0.00 3.34
3922 4287 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3925 4290 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3926 4291 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3927 4292 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3928 4293 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3929 4294 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
3930 4295 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
3933 4298 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
3935 4300 2.330440 TACGGACTACATACGGAGCA 57.670 50.000 0.00 0.00 0.00 4.26
3936 4301 3.562505 CAATACGGACTACATACGGAGC 58.437 50.000 0.00 0.00 0.00 4.70
3937 4302 3.817084 TCCAATACGGACTACATACGGAG 59.183 47.826 0.00 0.00 39.64 4.63
3970 4337 7.513091 ACTCCCTCCGTTCCTAAATATAAGATT 59.487 37.037 0.00 0.00 0.00 2.40
3971 4338 7.017531 ACTCCCTCCGTTCCTAAATATAAGAT 58.982 38.462 0.00 0.00 0.00 2.40
4016 4383 9.626045 AACTCTCACAAAACTGTAAAAGAAAAG 57.374 29.630 0.00 0.00 0.00 2.27
4024 4391 8.201464 TCTATGTCAACTCTCACAAAACTGTAA 58.799 33.333 0.00 0.00 0.00 2.41
4057 4424 3.565902 GGTTCAATAGCAGATACTTGCCC 59.434 47.826 0.00 0.00 45.18 5.36
4080 4447 4.139786 CACAGCCCAAGAGCACATATATT 58.860 43.478 0.00 0.00 34.23 1.28
4112 4481 3.667960 GCATGCTATAGCGCGCTATTTTT 60.668 43.478 46.76 31.85 45.83 1.94
4113 4482 2.159653 GCATGCTATAGCGCGCTATTTT 60.160 45.455 46.76 32.19 45.83 1.82
4114 4483 1.394917 GCATGCTATAGCGCGCTATTT 59.605 47.619 46.76 32.85 45.83 1.40
4115 4484 1.002366 GCATGCTATAGCGCGCTATT 58.998 50.000 46.76 33.01 45.83 1.73
4116 4485 0.174389 AGCATGCTATAGCGCGCTAT 59.826 50.000 44.16 44.16 45.37 2.97
4117 4486 0.733909 CAGCATGCTATAGCGCGCTA 60.734 55.000 39.72 39.72 45.42 4.26
4118 4487 2.341543 AGCATGCTATAGCGCGCT 59.658 55.556 38.01 38.01 45.83 5.92
4119 4488 1.953353 CTCAGCATGCTATAGCGCGC 61.953 60.000 26.66 26.66 45.83 6.86
4120 4489 0.387750 TCTCAGCATGCTATAGCGCG 60.388 55.000 22.19 13.65 45.83 6.86
4121 4490 1.788258 TTCTCAGCATGCTATAGCGC 58.212 50.000 22.19 16.91 45.83 5.92
4122 4491 3.124806 CCAATTCTCAGCATGCTATAGCG 59.875 47.826 22.19 7.86 45.83 4.26
4123 4492 3.119919 GCCAATTCTCAGCATGCTATAGC 60.120 47.826 22.19 18.18 42.50 2.97
4124 4493 4.325119 AGCCAATTCTCAGCATGCTATAG 58.675 43.478 22.19 20.09 34.76 1.31
4125 4494 4.321718 GAGCCAATTCTCAGCATGCTATA 58.678 43.478 22.19 10.89 34.76 1.31
4126 4495 3.147629 GAGCCAATTCTCAGCATGCTAT 58.852 45.455 22.19 7.46 34.76 2.97
4127 4496 2.569059 GAGCCAATTCTCAGCATGCTA 58.431 47.619 22.19 4.85 34.76 3.49
4128 4497 1.390565 GAGCCAATTCTCAGCATGCT 58.609 50.000 16.30 16.30 34.76 3.79
4129 4498 0.029035 CGAGCCAATTCTCAGCATGC 59.971 55.000 10.51 10.51 34.76 4.06
4130 4499 0.029035 GCGAGCCAATTCTCAGCATG 59.971 55.000 0.00 0.00 34.86 4.06
4131 4500 0.107312 AGCGAGCCAATTCTCAGCAT 60.107 50.000 10.95 0.00 36.12 3.79
4132 4501 0.536724 TAGCGAGCCAATTCTCAGCA 59.463 50.000 10.95 0.45 36.12 4.41
4133 4502 1.656652 TTAGCGAGCCAATTCTCAGC 58.343 50.000 0.00 0.00 34.91 4.26
4134 4503 5.991328 TTATTTAGCGAGCCAATTCTCAG 57.009 39.130 0.00 0.00 33.41 3.35
4135 4504 6.942532 ATTTATTTAGCGAGCCAATTCTCA 57.057 33.333 0.00 0.00 33.41 3.27
4136 4505 8.560374 ACTAATTTATTTAGCGAGCCAATTCTC 58.440 33.333 0.00 0.00 40.94 2.87
4137 4506 8.451908 ACTAATTTATTTAGCGAGCCAATTCT 57.548 30.769 0.00 0.00 40.94 2.40
4141 4510 9.767228 TGTATACTAATTTATTTAGCGAGCCAA 57.233 29.630 4.17 0.00 40.94 4.52
4142 4511 9.767228 TTGTATACTAATTTATTTAGCGAGCCA 57.233 29.630 4.17 0.00 40.94 4.75
4151 4520 9.609346 AGCGAGGTGTTGTATACTAATTTATTT 57.391 29.630 4.17 0.00 0.00 1.40
4156 4525 9.909644 CTATTAGCGAGGTGTTGTATACTAATT 57.090 33.333 4.17 0.00 32.80 1.40
4157 4526 8.027771 GCTATTAGCGAGGTGTTGTATACTAAT 58.972 37.037 4.17 0.00 34.45 1.73
4158 4527 7.013559 TGCTATTAGCGAGGTGTTGTATACTAA 59.986 37.037 10.94 0.00 46.26 2.24
4159 4528 6.487668 TGCTATTAGCGAGGTGTTGTATACTA 59.512 38.462 10.94 0.00 46.26 1.82
4160 4529 5.301045 TGCTATTAGCGAGGTGTTGTATACT 59.699 40.000 10.94 0.00 46.26 2.12
4161 4530 5.401674 GTGCTATTAGCGAGGTGTTGTATAC 59.598 44.000 10.94 0.00 46.26 1.47
4162 4531 5.068067 TGTGCTATTAGCGAGGTGTTGTATA 59.932 40.000 10.94 0.00 46.26 1.47
4163 4532 4.142026 TGTGCTATTAGCGAGGTGTTGTAT 60.142 41.667 10.94 0.00 46.26 2.29
4164 4533 3.193903 TGTGCTATTAGCGAGGTGTTGTA 59.806 43.478 10.94 0.00 46.26 2.41
4165 4534 2.028476 TGTGCTATTAGCGAGGTGTTGT 60.028 45.455 10.94 0.00 46.26 3.32
4166 4535 2.348666 GTGTGCTATTAGCGAGGTGTTG 59.651 50.000 10.94 0.00 46.26 3.33
4167 4536 2.233922 AGTGTGCTATTAGCGAGGTGTT 59.766 45.455 10.94 0.00 46.26 3.32
4168 4537 1.825474 AGTGTGCTATTAGCGAGGTGT 59.175 47.619 10.94 0.00 46.26 4.16
4169 4538 2.586258 AGTGTGCTATTAGCGAGGTG 57.414 50.000 10.94 0.00 46.26 4.00
4170 4539 4.082679 GCTATAGTGTGCTATTAGCGAGGT 60.083 45.833 10.94 0.00 46.26 3.85
4171 4540 4.416620 GCTATAGTGTGCTATTAGCGAGG 58.583 47.826 10.94 0.00 46.26 4.63
4172 4541 4.092120 CGCTATAGTGTGCTATTAGCGAG 58.908 47.826 15.33 1.57 46.18 5.03
4173 4542 3.669824 GCGCTATAGTGTGCTATTAGCGA 60.670 47.826 22.31 0.00 46.18 4.93
4174 4543 2.594654 GCGCTATAGTGTGCTATTAGCG 59.405 50.000 14.57 15.91 46.26 4.26
4175 4544 2.594654 CGCGCTATAGTGTGCTATTAGC 59.405 50.000 13.54 8.80 42.82 3.09
4176 4545 4.079665 TCGCGCTATAGTGTGCTATTAG 57.920 45.455 19.76 1.89 40.87 1.73
4177 4546 4.696899 ATCGCGCTATAGTGTGCTATTA 57.303 40.909 19.76 5.02 40.87 0.98
4178 4547 3.577649 ATCGCGCTATAGTGTGCTATT 57.422 42.857 19.76 4.33 40.87 1.73
4179 4548 4.902443 ATATCGCGCTATAGTGTGCTAT 57.098 40.909 19.76 16.90 40.87 2.97
4180 4549 4.260661 GCTATATCGCGCTATAGTGTGCTA 60.261 45.833 28.17 15.52 40.87 3.49
4181 4550 3.487711 GCTATATCGCGCTATAGTGTGCT 60.488 47.826 28.17 13.94 40.87 4.40
4182 4551 2.784380 GCTATATCGCGCTATAGTGTGC 59.216 50.000 28.17 16.81 39.78 4.57
4183 4552 4.016113 TGCTATATCGCGCTATAGTGTG 57.984 45.455 28.17 18.74 35.17 3.82
4184 4553 4.602006 CATGCTATATCGCGCTATAGTGT 58.398 43.478 28.17 18.54 35.17 3.55
4185 4554 3.423536 GCATGCTATATCGCGCTATAGTG 59.576 47.826 28.17 22.35 35.17 2.74
4186 4555 3.316588 AGCATGCTATATCGCGCTATAGT 59.683 43.478 28.17 13.91 35.17 2.12
4187 4556 3.894920 AGCATGCTATATCGCGCTATAG 58.105 45.455 25.40 25.40 35.61 1.31
4188 4557 3.990318 AGCATGCTATATCGCGCTATA 57.010 42.857 21.21 4.63 0.00 1.31
4189 4558 2.879002 AGCATGCTATATCGCGCTAT 57.121 45.000 21.21 7.70 0.00 2.97
4190 4559 3.119637 TGTTAGCATGCTATATCGCGCTA 60.120 43.478 27.35 7.05 30.90 4.26
4191 4560 2.263077 GTTAGCATGCTATATCGCGCT 58.737 47.619 27.35 0.82 32.62 5.92
4192 4561 1.992667 TGTTAGCATGCTATATCGCGC 59.007 47.619 27.35 12.10 0.00 6.86
4193 4562 2.028523 GCTGTTAGCATGCTATATCGCG 59.971 50.000 27.35 13.61 41.89 5.87
4194 4563 2.028523 CGCTGTTAGCATGCTATATCGC 59.971 50.000 27.35 22.89 42.58 4.58
4195 4564 3.245797 ACGCTGTTAGCATGCTATATCG 58.754 45.455 27.35 25.56 42.58 2.92
4196 4565 5.403246 AGTACGCTGTTAGCATGCTATATC 58.597 41.667 27.35 19.55 42.58 1.63
4197 4566 5.392767 AGTACGCTGTTAGCATGCTATAT 57.607 39.130 27.35 11.97 42.58 0.86
4198 4567 4.848562 AGTACGCTGTTAGCATGCTATA 57.151 40.909 27.35 17.94 42.58 1.31
4199 4568 3.735237 AGTACGCTGTTAGCATGCTAT 57.265 42.857 27.35 14.17 42.58 2.97
4200 4569 3.520290 AAGTACGCTGTTAGCATGCTA 57.480 42.857 23.52 23.52 42.58 3.49
4201 4570 2.386661 AAGTACGCTGTTAGCATGCT 57.613 45.000 25.99 25.99 42.58 3.79
4202 4571 2.415168 TCAAAGTACGCTGTTAGCATGC 59.585 45.455 10.51 10.51 42.58 4.06
4203 4572 3.062639 CCTCAAAGTACGCTGTTAGCATG 59.937 47.826 1.45 0.00 42.58 4.06
4204 4573 3.262420 CCTCAAAGTACGCTGTTAGCAT 58.738 45.455 1.45 0.00 42.58 3.79
4205 4574 2.683968 CCTCAAAGTACGCTGTTAGCA 58.316 47.619 1.45 0.00 42.58 3.49
4206 4575 1.393883 GCCTCAAAGTACGCTGTTAGC 59.606 52.381 0.00 0.00 38.02 3.09
4207 4576 2.000447 GGCCTCAAAGTACGCTGTTAG 59.000 52.381 0.00 0.00 0.00 2.34
4208 4577 1.670674 CGGCCTCAAAGTACGCTGTTA 60.671 52.381 0.00 0.00 0.00 2.41
4209 4578 0.949105 CGGCCTCAAAGTACGCTGTT 60.949 55.000 0.00 0.00 0.00 3.16
4210 4579 1.374252 CGGCCTCAAAGTACGCTGT 60.374 57.895 0.00 0.00 0.00 4.40
4211 4580 2.100631 CCGGCCTCAAAGTACGCTG 61.101 63.158 0.00 0.00 0.00 5.18
4212 4581 2.264794 CCGGCCTCAAAGTACGCT 59.735 61.111 0.00 0.00 0.00 5.07
4213 4582 3.497031 GCCGGCCTCAAAGTACGC 61.497 66.667 18.11 0.00 0.00 4.42
4214 4583 3.186047 CGCCGGCCTCAAAGTACG 61.186 66.667 23.46 0.00 0.00 3.67
4215 4584 2.567564 TAGCGCCGGCCTCAAAGTAC 62.568 60.000 23.46 0.00 41.24 2.73
4216 4585 1.682451 ATAGCGCCGGCCTCAAAGTA 61.682 55.000 23.46 3.04 41.24 2.24
4217 4586 2.536997 AATAGCGCCGGCCTCAAAGT 62.537 55.000 23.46 0.44 41.24 2.66
4218 4587 1.376609 AAATAGCGCCGGCCTCAAAG 61.377 55.000 23.46 6.63 41.24 2.77
4219 4588 0.963355 AAAATAGCGCCGGCCTCAAA 60.963 50.000 23.46 4.57 41.24 2.69
4220 4589 1.377987 AAAATAGCGCCGGCCTCAA 60.378 52.632 23.46 4.08 41.24 3.02
4221 4590 2.112198 CAAAATAGCGCCGGCCTCA 61.112 57.895 23.46 5.81 41.24 3.86
4222 4591 1.654023 AACAAAATAGCGCCGGCCTC 61.654 55.000 23.46 13.49 41.24 4.70
4223 4592 1.677633 AACAAAATAGCGCCGGCCT 60.678 52.632 23.46 21.00 41.24 5.19
4224 4593 1.516169 CAACAAAATAGCGCCGGCC 60.516 57.895 23.46 14.23 41.24 6.13
4225 4594 0.109504 TTCAACAAAATAGCGCCGGC 60.110 50.000 19.07 19.07 40.37 6.13
4226 4595 1.199097 ACTTCAACAAAATAGCGCCGG 59.801 47.619 2.29 0.00 0.00 6.13
4227 4596 2.241722 CACTTCAACAAAATAGCGCCG 58.758 47.619 2.29 0.00 0.00 6.46
4228 4597 1.985684 GCACTTCAACAAAATAGCGCC 59.014 47.619 2.29 0.00 0.00 6.53
4229 4598 1.643810 CGCACTTCAACAAAATAGCGC 59.356 47.619 0.00 0.00 37.43 5.92
4230 4599 1.643810 GCGCACTTCAACAAAATAGCG 59.356 47.619 0.30 0.00 45.89 4.26
4231 4600 2.658325 CAGCGCACTTCAACAAAATAGC 59.342 45.455 11.47 0.00 0.00 2.97
4232 4601 3.888934 ACAGCGCACTTCAACAAAATAG 58.111 40.909 11.47 0.00 0.00 1.73
4233 4602 3.980646 ACAGCGCACTTCAACAAAATA 57.019 38.095 11.47 0.00 0.00 1.40
4234 4603 2.869233 ACAGCGCACTTCAACAAAAT 57.131 40.000 11.47 0.00 0.00 1.82
4235 4604 2.645730 AACAGCGCACTTCAACAAAA 57.354 40.000 11.47 0.00 0.00 2.44
4236 4605 2.645730 AAACAGCGCACTTCAACAAA 57.354 40.000 11.47 0.00 0.00 2.83
4237 4606 2.645730 AAAACAGCGCACTTCAACAA 57.354 40.000 11.47 0.00 0.00 2.83
4238 4607 2.645730 AAAAACAGCGCACTTCAACA 57.354 40.000 11.47 0.00 0.00 3.33
4256 4625 3.258123 GGATAAGCACAGCCAAGGAAAAA 59.742 43.478 0.00 0.00 0.00 1.94
4257 4626 2.825532 GGATAAGCACAGCCAAGGAAAA 59.174 45.455 0.00 0.00 0.00 2.29
4258 4627 2.224992 TGGATAAGCACAGCCAAGGAAA 60.225 45.455 0.00 0.00 0.00 3.13
4259 4628 1.354031 TGGATAAGCACAGCCAAGGAA 59.646 47.619 0.00 0.00 0.00 3.36
4260 4629 0.991146 TGGATAAGCACAGCCAAGGA 59.009 50.000 0.00 0.00 0.00 3.36
4261 4630 1.098050 GTGGATAAGCACAGCCAAGG 58.902 55.000 0.00 0.00 31.18 3.61
4262 4631 2.119801 AGTGGATAAGCACAGCCAAG 57.880 50.000 0.00 0.00 31.18 3.61
4263 4632 3.712016 TTAGTGGATAAGCACAGCCAA 57.288 42.857 0.00 0.00 31.18 4.52
4264 4633 3.712016 TTTAGTGGATAAGCACAGCCA 57.288 42.857 0.00 0.00 0.00 4.75
4265 4634 4.380550 GGTTTTTAGTGGATAAGCACAGCC 60.381 45.833 0.00 0.00 0.00 4.85
4266 4635 4.217550 TGGTTTTTAGTGGATAAGCACAGC 59.782 41.667 0.00 0.00 0.00 4.40
4267 4636 5.957842 TGGTTTTTAGTGGATAAGCACAG 57.042 39.130 0.00 0.00 0.00 3.66
4268 4637 6.909550 ATTGGTTTTTAGTGGATAAGCACA 57.090 33.333 0.00 0.00 0.00 4.57
4269 4638 6.964934 CGTATTGGTTTTTAGTGGATAAGCAC 59.035 38.462 0.00 0.00 0.00 4.40
4270 4639 6.094325 CCGTATTGGTTTTTAGTGGATAAGCA 59.906 38.462 0.00 0.00 0.00 3.91
4271 4640 6.492254 CCGTATTGGTTTTTAGTGGATAAGC 58.508 40.000 0.00 0.00 0.00 3.09
4272 4641 6.459161 GGCCGTATTGGTTTTTAGTGGATAAG 60.459 42.308 0.00 0.00 41.21 1.73
4273 4642 5.357596 GGCCGTATTGGTTTTTAGTGGATAA 59.642 40.000 0.00 0.00 41.21 1.75
4442 4811 2.962786 TTGTTCCACGCCGTCACG 60.963 61.111 0.00 0.00 39.50 4.35
4475 4844 1.153667 GAGGTCCTTCTGCTGCTCG 60.154 63.158 0.00 0.00 0.00 5.03
4604 4973 0.820482 TGTCTGTCGTCTTCACCGGA 60.820 55.000 9.46 0.00 0.00 5.14
4667 5049 6.368791 TCATCATGTTTACAAGTGCTACTGTC 59.631 38.462 0.00 0.00 0.00 3.51
4677 5075 9.764870 CATACAACTTCTCATCATGTTTACAAG 57.235 33.333 0.00 0.00 0.00 3.16
4729 5129 5.911421 TGACATTCGAAACATTCTACAACG 58.089 37.500 0.00 0.00 0.00 4.10
4744 5153 6.974677 ATATTATTTTTGCGCTGACATTCG 57.025 33.333 9.73 0.00 0.00 3.34
4765 5174 9.120538 GGACCTCAAAAGCAAATTCTACATATA 57.879 33.333 0.00 0.00 0.00 0.86
4766 5175 7.201732 CGGACCTCAAAAGCAAATTCTACATAT 60.202 37.037 0.00 0.00 0.00 1.78
4767 5176 6.093495 CGGACCTCAAAAGCAAATTCTACATA 59.907 38.462 0.00 0.00 0.00 2.29
4784 5193 3.706373 GGCTTGGAGCGGACCTCA 61.706 66.667 0.00 0.00 43.62 3.86
4788 5197 1.095807 GTTATGGGCTTGGAGCGGAC 61.096 60.000 0.00 0.00 43.62 4.79
4818 6614 8.472683 AAATAATTTATTTGTTAGCAAGCGCA 57.527 26.923 11.47 0.00 37.53 6.09
4854 6731 3.625649 TGTGGTGCATAAGCTGATACA 57.374 42.857 0.00 0.00 42.74 2.29
4858 6735 1.155889 CGTTGTGGTGCATAAGCTGA 58.844 50.000 0.00 0.00 42.74 4.26
4870 6747 0.034756 TGATCACCTCACCGTTGTGG 59.965 55.000 0.00 0.00 42.98 4.17
4871 6748 1.800586 CTTGATCACCTCACCGTTGTG 59.199 52.381 0.00 0.00 44.18 3.33
4872 6749 1.416401 ACTTGATCACCTCACCGTTGT 59.584 47.619 0.00 0.00 32.17 3.32
4873 6750 2.169832 ACTTGATCACCTCACCGTTG 57.830 50.000 0.00 0.00 32.17 4.10
4876 6753 2.350772 GCAAAACTTGATCACCTCACCG 60.351 50.000 0.00 0.00 32.17 4.94
4877 6754 2.029918 GGCAAAACTTGATCACCTCACC 60.030 50.000 0.00 0.00 32.17 4.02
4878 6755 2.029918 GGGCAAAACTTGATCACCTCAC 60.030 50.000 0.00 0.00 32.17 3.51
4879 6756 2.238521 GGGCAAAACTTGATCACCTCA 58.761 47.619 0.00 0.00 0.00 3.86
4880 6757 2.238521 TGGGCAAAACTTGATCACCTC 58.761 47.619 0.00 0.00 0.00 3.85
4881 6758 2.380064 TGGGCAAAACTTGATCACCT 57.620 45.000 0.00 0.00 0.00 4.00
4882 6759 3.683365 ATTGGGCAAAACTTGATCACC 57.317 42.857 0.00 0.00 0.00 4.02
4883 6760 5.055812 TGAAATTGGGCAAAACTTGATCAC 58.944 37.500 0.00 0.00 0.00 3.06
4884 6761 5.287674 TGAAATTGGGCAAAACTTGATCA 57.712 34.783 0.00 0.00 0.00 2.92
4885 6762 6.616774 TTTGAAATTGGGCAAAACTTGATC 57.383 33.333 0.00 0.00 31.64 2.92
4886 6763 5.008911 GCTTTGAAATTGGGCAAAACTTGAT 59.991 36.000 0.00 0.00 34.01 2.57
4887 6764 4.335037 GCTTTGAAATTGGGCAAAACTTGA 59.665 37.500 0.00 0.00 34.01 3.02
4888 6765 4.497842 GGCTTTGAAATTGGGCAAAACTTG 60.498 41.667 0.00 0.00 34.01 3.16
4901 6778 1.620323 GCAGTGAAGGGGCTTTGAAAT 59.380 47.619 0.00 0.00 0.00 2.17
4905 6782 2.278330 GGGCAGTGAAGGGGCTTTG 61.278 63.158 0.00 0.00 0.00 2.77
4908 6785 0.921256 ATAAGGGCAGTGAAGGGGCT 60.921 55.000 0.00 0.00 0.00 5.19
4937 6814 2.025155 TCTTGAGCTAGCCTACCTTCG 58.975 52.381 12.13 0.00 0.00 3.79
4946 6823 1.539280 GGGGATTCGTCTTGAGCTAGC 60.539 57.143 6.62 6.62 0.00 3.42
4947 6824 1.757118 TGGGGATTCGTCTTGAGCTAG 59.243 52.381 0.00 0.00 0.00 3.42
4973 6850 5.838529 TGACTAGTTGATGACTTCGTTGAA 58.161 37.500 0.00 0.00 39.86 2.69
4978 6855 4.703645 TCCTGACTAGTTGATGACTTCG 57.296 45.455 0.00 0.00 39.86 3.79
4985 6862 9.606631 GTATCTTGAAATTCCTGACTAGTTGAT 57.393 33.333 0.00 0.00 0.00 2.57
4987 6864 7.010552 CGGTATCTTGAAATTCCTGACTAGTTG 59.989 40.741 0.00 0.00 0.00 3.16
4991 6868 6.785337 TCGGTATCTTGAAATTCCTGACTA 57.215 37.500 0.00 0.00 0.00 2.59
5003 6880 4.382685 GGGTCTCAACATTCGGTATCTTGA 60.383 45.833 0.00 0.00 0.00 3.02
5016 6893 2.325484 TGTAAGCTCTGGGTCTCAACA 58.675 47.619 0.00 0.00 0.00 3.33
5027 6904 4.755123 GGTGTGTATTGTGTTGTAAGCTCT 59.245 41.667 0.00 0.00 0.00 4.09
5028 6905 4.083484 GGGTGTGTATTGTGTTGTAAGCTC 60.083 45.833 0.00 0.00 0.00 4.09
5062 6939 2.501610 CTTAGAGCGTGGGGAGGC 59.498 66.667 0.00 0.00 0.00 4.70
5063 6940 1.381327 TCCTTAGAGCGTGGGGAGG 60.381 63.158 0.00 0.00 0.00 4.30
5064 6941 2.119886 CTCCTTAGAGCGTGGGGAG 58.880 63.158 0.00 0.00 37.76 4.30
5065 6942 4.356979 CTCCTTAGAGCGTGGGGA 57.643 61.111 0.00 0.00 32.13 4.81
5110 7015 0.952497 CACAGATTCACAGGCGTGCT 60.952 55.000 6.26 0.00 43.28 4.40
5119 7024 5.163364 ACTCCTGATGGTATCACAGATTCAC 60.163 44.000 7.03 0.00 35.06 3.18
5133 7038 3.636679 TGGTCTTCTCTACTCCTGATGG 58.363 50.000 0.00 0.00 0.00 3.51
5145 7050 0.037232 CCCTCGTGGTTGGTCTTCTC 60.037 60.000 2.33 0.00 0.00 2.87
5167 7072 2.317530 AGGGCGAAATTCTCTACTGC 57.682 50.000 0.00 0.00 0.00 4.40
5459 7364 0.322816 ATGACAAGGCACCTGCGATT 60.323 50.000 0.00 0.00 43.26 3.34
5463 7368 1.251251 AAAGATGACAAGGCACCTGC 58.749 50.000 0.00 0.00 41.14 4.85
5465 7370 3.502211 CGTTTAAAGATGACAAGGCACCT 59.498 43.478 0.00 0.00 0.00 4.00
5468 7373 4.385825 AGACGTTTAAAGATGACAAGGCA 58.614 39.130 0.00 0.00 0.00 4.75
5485 7390 7.849804 AATTTGATTGAGCATTAGTAGACGT 57.150 32.000 0.00 0.00 0.00 4.34
5498 7403 8.361592 AGCAACTGAAGAAAAATTTGATTGAG 57.638 30.769 0.00 0.00 0.00 3.02
5580 7496 3.243002 GGGTGACTATCGAAGTTCCGTAG 60.243 52.174 0.00 2.84 39.07 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.