Multiple sequence alignment - TraesCS3D01G009400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G009400 chr3D 100.000 4422 0 0 1 4422 3200135 3195714 0.000000e+00 8167.0
1 TraesCS3D01G009400 chr3D 87.136 653 69 13 2203 2848 3223496 3222852 0.000000e+00 726.0
2 TraesCS3D01G009400 chr3D 83.547 468 66 9 2968 3426 3222687 3222222 1.140000e-115 427.0
3 TraesCS3D01G009400 chr3D 78.696 629 76 30 673 1259 3224807 3224195 2.510000e-97 366.0
4 TraesCS3D01G009400 chr3D 98.810 168 2 0 505 672 32278182 32278349 2.590000e-77 300.0
5 TraesCS3D01G009400 chr3D 82.906 234 36 4 4146 4375 3221508 3221275 1.610000e-49 207.0
6 TraesCS3D01G009400 chr3A 83.859 2125 245 53 783 2838 374087 371992 0.000000e+00 1934.0
7 TraesCS3D01G009400 chr3A 87.372 681 71 12 2175 2848 399637 398965 0.000000e+00 767.0
8 TraesCS3D01G009400 chr3A 82.432 592 86 16 2844 3426 371918 371336 6.600000e-138 501.0
9 TraesCS3D01G009400 chr3A 84.946 465 62 7 2968 3426 398517 398055 8.660000e-127 464.0
10 TraesCS3D01G009400 chr3A 79.836 610 79 25 681 1259 401056 400460 5.330000e-109 405.0
11 TraesCS3D01G009400 chr3A 78.398 412 83 4 2434 2842 126719 126311 3.390000e-66 263.0
12 TraesCS3D01G009400 chr3A 82.479 234 37 4 4146 4375 397083 396850 7.500000e-48 202.0
13 TraesCS3D01G009400 chr3A 88.462 130 12 3 267 393 374675 374546 2.130000e-33 154.0
14 TraesCS3D01G009400 chr3A 95.652 46 0 1 463 506 401123 401078 6.140000e-09 73.1
15 TraesCS3D01G009400 chr3B 89.608 1453 99 29 1415 2843 2308996 2310420 0.000000e+00 1799.0
16 TraesCS3D01G009400 chr3B 91.473 903 66 8 3527 4420 2311153 2312053 0.000000e+00 1230.0
17 TraesCS3D01G009400 chr3B 83.269 1034 143 24 1831 2851 2171144 2170128 0.000000e+00 924.0
18 TraesCS3D01G009400 chr3B 83.480 1023 131 28 1831 2841 2297803 2298799 0.000000e+00 918.0
19 TraesCS3D01G009400 chr3B 91.298 678 39 8 2844 3505 2310488 2311161 0.000000e+00 907.0
20 TraesCS3D01G009400 chr3B 87.682 755 30 33 663 1407 2308200 2308901 0.000000e+00 821.0
21 TraesCS3D01G009400 chr3B 87.141 661 81 4 2185 2842 2161961 2161302 0.000000e+00 747.0
22 TraesCS3D01G009400 chr3B 84.839 653 64 19 977 1612 2163448 2162814 3.760000e-175 625.0
23 TraesCS3D01G009400 chr3B 76.226 1325 194 71 505 1783 2172715 2171466 1.370000e-164 590.0
24 TraesCS3D01G009400 chr3B 82.585 557 86 9 2860 3411 2161220 2160670 8.600000e-132 481.0
25 TraesCS3D01G009400 chr3B 77.405 925 124 48 777 1661 2296457 2297336 5.180000e-129 472.0
26 TraesCS3D01G009400 chr3B 83.547 468 69 7 2965 3426 2298969 2299434 8.790000e-117 431.0
27 TraesCS3D01G009400 chr3B 82.759 464 74 6 2968 3426 2169967 2169505 4.120000e-110 409.0
28 TraesCS3D01G009400 chr3B 84.790 309 38 7 4096 4401 2160564 2160262 7.190000e-78 302.0
29 TraesCS3D01G009400 chr3B 83.988 331 30 11 1670 1995 2162672 2162360 3.340000e-76 296.0
30 TraesCS3D01G009400 chr3B 93.671 79 5 0 429 507 2308121 2308199 7.770000e-23 119.0
31 TraesCS3D01G009400 chr3B 92.000 75 6 0 3352 3426 2128446 2128372 6.050000e-19 106.0
32 TraesCS3D01G009400 chr3B 91.026 78 7 0 3349 3426 2325029 2325106 6.050000e-19 106.0
33 TraesCS3D01G009400 chr4B 79.903 413 83 0 2430 2842 653429734 653429322 2.000000e-78 303.0
34 TraesCS3D01G009400 chr2D 99.398 166 1 0 504 669 602707811 602707976 7.190000e-78 302.0
35 TraesCS3D01G009400 chr5D 98.810 168 2 0 505 672 451486593 451486426 2.590000e-77 300.0
36 TraesCS3D01G009400 chr5D 95.135 185 8 1 492 675 436805979 436806163 1.560000e-74 291.0
37 TraesCS3D01G009400 chr4D 98.810 168 2 0 505 672 10770690 10770523 2.590000e-77 300.0
38 TraesCS3D01G009400 chr6D 97.688 173 3 1 504 675 286634345 286634173 3.340000e-76 296.0
39 TraesCS3D01G009400 chr6D 97.159 176 4 1 504 679 472748226 472748052 3.340000e-76 296.0
40 TraesCS3D01G009400 chr6D 96.629 178 5 1 504 681 257631236 257631060 1.200000e-75 294.0
41 TraesCS3D01G009400 chr1D 97.688 173 2 2 504 676 115018594 115018764 3.340000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G009400 chr3D 3195714 3200135 4421 True 8167.00 8167 100.000000 1 4422 1 chr3D.!!$R1 4421
1 TraesCS3D01G009400 chr3D 3221275 3224807 3532 True 431.50 726 83.071250 673 4375 4 chr3D.!!$R2 3702
2 TraesCS3D01G009400 chr3A 371336 374675 3339 True 863.00 1934 84.917667 267 3426 3 chr3A.!!$R2 3159
3 TraesCS3D01G009400 chr3A 396850 401123 4273 True 382.22 767 86.057000 463 4375 5 chr3A.!!$R3 3912
4 TraesCS3D01G009400 chr3B 2308121 2312053 3932 False 975.20 1799 90.746400 429 4420 5 chr3B.!!$F3 3991
5 TraesCS3D01G009400 chr3B 2169505 2172715 3210 True 641.00 924 80.751333 505 3426 3 chr3B.!!$R3 2921
6 TraesCS3D01G009400 chr3B 2296457 2299434 2977 False 607.00 918 81.477333 777 3426 3 chr3B.!!$F2 2649
7 TraesCS3D01G009400 chr3B 2160262 2163448 3186 True 490.20 747 84.668600 977 4401 5 chr3B.!!$R2 3424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 1133 0.033601 TCCCATTTAAGCCACGCCAT 60.034 50.0 0.00 0.0 0.00 4.40 F
1184 1571 0.682852 TCCAACCCTGTAAGACCACG 59.317 55.0 0.00 0.0 34.07 4.94 F
1265 1667 1.670949 TAGCTGCTTCTCTCCAGGCG 61.671 60.0 7.79 0.0 0.00 5.52 F
2737 4047 0.179062 GCACAGAGAGGCCGATCATT 60.179 55.0 12.12 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2511 3821 0.532573 ATGATGCAACTCGTCGACCT 59.467 50.000 10.58 0.0 33.35 3.85 R
2642 3952 1.148273 GTGCCGATGCCTCCCAATA 59.852 57.895 0.00 0.0 36.33 1.90 R
2761 4071 1.219393 CTCGGCACCTTCTTCCTCC 59.781 63.158 0.00 0.0 0.00 4.30 R
3821 5547 0.914644 TCTTTGCTCCTGGCTATGCT 59.085 50.000 0.00 0.0 42.39 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.002797 AGGCTTGTCAAATCCGGC 57.997 55.556 0.00 0.00 0.00 6.13
18 19 1.074775 AGGCTTGTCAAATCCGGCA 59.925 52.632 0.00 0.00 0.00 5.69
19 20 1.212751 GGCTTGTCAAATCCGGCAC 59.787 57.895 0.00 0.00 0.00 5.01
20 21 1.212751 GCTTGTCAAATCCGGCACC 59.787 57.895 0.00 0.00 0.00 5.01
21 22 1.883021 CTTGTCAAATCCGGCACCC 59.117 57.895 0.00 0.00 0.00 4.61
22 23 0.609131 CTTGTCAAATCCGGCACCCT 60.609 55.000 0.00 0.00 0.00 4.34
23 24 0.693622 TTGTCAAATCCGGCACCCTA 59.306 50.000 0.00 0.00 0.00 3.53
24 25 0.916086 TGTCAAATCCGGCACCCTAT 59.084 50.000 0.00 0.00 0.00 2.57
25 26 1.308998 GTCAAATCCGGCACCCTATG 58.691 55.000 0.00 0.00 0.00 2.23
26 27 0.182537 TCAAATCCGGCACCCTATGG 59.817 55.000 0.00 0.00 37.80 2.74
34 35 4.569180 CACCCTATGGCAGCCGGG 62.569 72.222 19.03 19.03 42.53 5.73
50 51 4.740822 GGCACGCAGGGGGACATT 62.741 66.667 0.00 0.00 0.00 2.71
51 52 3.443045 GCACGCAGGGGGACATTG 61.443 66.667 0.00 0.00 0.00 2.82
52 53 2.751436 CACGCAGGGGGACATTGG 60.751 66.667 0.00 0.00 0.00 3.16
53 54 3.256960 ACGCAGGGGGACATTGGT 61.257 61.111 0.00 0.00 0.00 3.67
54 55 2.751436 CGCAGGGGGACATTGGTG 60.751 66.667 0.00 0.00 0.00 4.17
55 56 3.070576 GCAGGGGGACATTGGTGC 61.071 66.667 0.00 0.00 34.10 5.01
56 57 2.440147 CAGGGGGACATTGGTGCA 59.560 61.111 0.00 0.00 37.04 4.57
57 58 1.228831 CAGGGGGACATTGGTGCAA 60.229 57.895 0.00 0.00 37.04 4.08
58 59 0.831288 CAGGGGGACATTGGTGCAAA 60.831 55.000 0.00 0.00 37.04 3.68
59 60 0.542702 AGGGGGACATTGGTGCAAAG 60.543 55.000 0.00 0.00 37.04 2.77
60 61 0.541764 GGGGGACATTGGTGCAAAGA 60.542 55.000 0.00 0.00 37.04 2.52
61 62 1.560505 GGGGACATTGGTGCAAAGAT 58.439 50.000 0.00 0.00 37.04 2.40
62 63 2.622977 GGGGGACATTGGTGCAAAGATA 60.623 50.000 0.00 0.00 37.04 1.98
63 64 3.299503 GGGGACATTGGTGCAAAGATAT 58.700 45.455 0.00 0.00 37.04 1.63
64 65 3.068590 GGGGACATTGGTGCAAAGATATG 59.931 47.826 0.00 0.00 37.04 1.78
65 66 3.068590 GGGACATTGGTGCAAAGATATGG 59.931 47.826 0.00 0.00 37.04 2.74
66 67 3.068590 GGACATTGGTGCAAAGATATGGG 59.931 47.826 0.00 0.00 35.12 4.00
67 68 3.701040 GACATTGGTGCAAAGATATGGGT 59.299 43.478 0.00 0.00 0.00 4.51
68 69 3.448301 ACATTGGTGCAAAGATATGGGTG 59.552 43.478 0.00 0.00 0.00 4.61
69 70 3.448093 TTGGTGCAAAGATATGGGTGA 57.552 42.857 0.00 0.00 0.00 4.02
70 71 3.003394 TGGTGCAAAGATATGGGTGAG 57.997 47.619 0.00 0.00 0.00 3.51
71 72 2.575735 TGGTGCAAAGATATGGGTGAGA 59.424 45.455 0.00 0.00 0.00 3.27
72 73 3.010027 TGGTGCAAAGATATGGGTGAGAA 59.990 43.478 0.00 0.00 0.00 2.87
73 74 3.629398 GGTGCAAAGATATGGGTGAGAAG 59.371 47.826 0.00 0.00 0.00 2.85
74 75 3.065925 GTGCAAAGATATGGGTGAGAAGC 59.934 47.826 0.00 0.00 0.00 3.86
75 76 3.282021 GCAAAGATATGGGTGAGAAGCA 58.718 45.455 0.00 0.00 0.00 3.91
76 77 3.696051 GCAAAGATATGGGTGAGAAGCAA 59.304 43.478 0.00 0.00 0.00 3.91
77 78 4.439289 GCAAAGATATGGGTGAGAAGCAAC 60.439 45.833 0.00 0.00 0.00 4.17
78 79 3.185246 AGATATGGGTGAGAAGCAACG 57.815 47.619 0.00 0.00 34.00 4.10
79 80 2.501723 AGATATGGGTGAGAAGCAACGT 59.498 45.455 0.00 0.00 34.00 3.99
80 81 2.851263 TATGGGTGAGAAGCAACGTT 57.149 45.000 0.00 0.00 34.00 3.99
81 82 1.238439 ATGGGTGAGAAGCAACGTTG 58.762 50.000 23.90 23.90 34.00 4.10
91 92 3.834726 CAACGTTGCAGGGTGGAA 58.165 55.556 16.51 0.00 0.00 3.53
92 93 2.111162 CAACGTTGCAGGGTGGAAA 58.889 52.632 16.51 0.00 26.96 3.13
93 94 0.248866 CAACGTTGCAGGGTGGAAAC 60.249 55.000 16.51 0.00 26.96 2.78
94 95 0.395173 AACGTTGCAGGGTGGAAACT 60.395 50.000 0.00 0.00 26.96 2.66
95 96 0.395173 ACGTTGCAGGGTGGAAACTT 60.395 50.000 0.00 0.00 26.96 2.66
96 97 0.310854 CGTTGCAGGGTGGAAACTTC 59.689 55.000 0.00 0.00 26.96 3.01
97 98 1.692411 GTTGCAGGGTGGAAACTTCT 58.308 50.000 0.00 0.00 26.96 2.85
98 99 1.338020 GTTGCAGGGTGGAAACTTCTG 59.662 52.381 0.00 0.00 26.96 3.02
99 100 1.959848 GCAGGGTGGAAACTTCTGC 59.040 57.895 0.00 0.00 42.89 4.26
100 101 1.527433 GCAGGGTGGAAACTTCTGCC 61.527 60.000 0.00 0.00 43.36 4.85
101 102 1.073199 AGGGTGGAAACTTCTGCCG 59.927 57.895 0.00 0.00 0.00 5.69
102 103 1.971695 GGGTGGAAACTTCTGCCGG 60.972 63.158 0.00 0.00 0.00 6.13
103 104 1.971695 GGTGGAAACTTCTGCCGGG 60.972 63.158 2.18 0.00 0.00 5.73
104 105 1.228154 GTGGAAACTTCTGCCGGGT 60.228 57.895 2.18 0.00 0.00 5.28
105 106 1.228124 TGGAAACTTCTGCCGGGTG 60.228 57.895 2.18 0.00 0.00 4.61
106 107 1.072505 GGAAACTTCTGCCGGGTGA 59.927 57.895 2.18 0.00 0.00 4.02
107 108 0.955919 GGAAACTTCTGCCGGGTGAG 60.956 60.000 2.18 0.00 0.00 3.51
108 109 0.034896 GAAACTTCTGCCGGGTGAGA 59.965 55.000 2.18 0.00 0.00 3.27
109 110 0.035458 AAACTTCTGCCGGGTGAGAG 59.965 55.000 2.18 0.00 0.00 3.20
110 111 1.122019 AACTTCTGCCGGGTGAGAGT 61.122 55.000 2.18 0.00 0.00 3.24
111 112 0.251653 ACTTCTGCCGGGTGAGAGTA 60.252 55.000 2.18 0.00 0.00 2.59
112 113 0.457851 CTTCTGCCGGGTGAGAGTAG 59.542 60.000 2.18 0.00 0.00 2.57
113 114 0.970937 TTCTGCCGGGTGAGAGTAGG 60.971 60.000 2.18 0.00 0.00 3.18
115 116 2.760385 GCCGGGTGAGAGTAGGCT 60.760 66.667 2.18 0.00 44.06 4.58
116 117 1.455217 GCCGGGTGAGAGTAGGCTA 60.455 63.158 2.18 0.00 44.06 3.93
117 118 1.736365 GCCGGGTGAGAGTAGGCTAC 61.736 65.000 16.93 16.93 44.06 3.58
118 119 0.395311 CCGGGTGAGAGTAGGCTACA 60.395 60.000 25.48 2.88 0.00 2.74
119 120 1.471119 CGGGTGAGAGTAGGCTACAA 58.529 55.000 25.48 6.38 0.00 2.41
120 121 2.032620 CGGGTGAGAGTAGGCTACAAT 58.967 52.381 25.48 13.74 0.00 2.71
121 122 2.431057 CGGGTGAGAGTAGGCTACAATT 59.569 50.000 25.48 10.88 0.00 2.32
122 123 3.118738 CGGGTGAGAGTAGGCTACAATTT 60.119 47.826 25.48 5.63 0.00 1.82
123 124 4.623171 CGGGTGAGAGTAGGCTACAATTTT 60.623 45.833 25.48 5.24 0.00 1.82
124 125 5.394883 CGGGTGAGAGTAGGCTACAATTTTA 60.395 44.000 25.48 5.05 0.00 1.52
125 126 6.049790 GGGTGAGAGTAGGCTACAATTTTAG 58.950 44.000 25.48 0.00 0.00 1.85
126 127 6.127140 GGGTGAGAGTAGGCTACAATTTTAGA 60.127 42.308 25.48 0.00 0.00 2.10
127 128 6.981559 GGTGAGAGTAGGCTACAATTTTAGAG 59.018 42.308 25.48 0.00 0.00 2.43
128 129 7.363968 GGTGAGAGTAGGCTACAATTTTAGAGT 60.364 40.741 25.48 1.45 0.00 3.24
129 130 8.035984 GTGAGAGTAGGCTACAATTTTAGAGTT 58.964 37.037 25.48 0.91 0.00 3.01
130 131 8.251721 TGAGAGTAGGCTACAATTTTAGAGTTC 58.748 37.037 25.48 10.15 0.00 3.01
131 132 8.368962 AGAGTAGGCTACAATTTTAGAGTTCT 57.631 34.615 25.48 12.12 0.00 3.01
132 133 8.254508 AGAGTAGGCTACAATTTTAGAGTTCTG 58.745 37.037 25.48 0.00 0.00 3.02
133 134 8.135382 AGTAGGCTACAATTTTAGAGTTCTGA 57.865 34.615 25.48 0.00 0.00 3.27
134 135 8.763601 AGTAGGCTACAATTTTAGAGTTCTGAT 58.236 33.333 25.48 0.00 0.00 2.90
137 138 8.207545 AGGCTACAATTTTAGAGTTCTGATAGG 58.792 37.037 2.74 0.00 0.00 2.57
138 139 7.041712 GGCTACAATTTTAGAGTTCTGATAGGC 60.042 40.741 2.74 0.00 0.00 3.93
139 140 7.713073 GCTACAATTTTAGAGTTCTGATAGGCT 59.287 37.037 2.74 0.00 0.00 4.58
141 142 8.950208 ACAATTTTAGAGTTCTGATAGGCTAC 57.050 34.615 0.00 0.00 0.00 3.58
142 143 8.763601 ACAATTTTAGAGTTCTGATAGGCTACT 58.236 33.333 0.00 0.00 0.00 2.57
143 144 9.606631 CAATTTTAGAGTTCTGATAGGCTACTT 57.393 33.333 0.00 0.00 0.00 2.24
144 145 9.825109 AATTTTAGAGTTCTGATAGGCTACTTC 57.175 33.333 0.00 0.00 0.00 3.01
145 146 6.963083 TTAGAGTTCTGATAGGCTACTTCC 57.037 41.667 0.00 0.00 0.00 3.46
146 147 5.137412 AGAGTTCTGATAGGCTACTTCCT 57.863 43.478 0.00 0.00 40.21 3.36
147 148 5.524535 AGAGTTCTGATAGGCTACTTCCTT 58.475 41.667 0.00 0.00 37.66 3.36
148 149 5.596772 AGAGTTCTGATAGGCTACTTCCTTC 59.403 44.000 0.00 0.00 37.66 3.46
149 150 4.339814 AGTTCTGATAGGCTACTTCCTTCG 59.660 45.833 0.00 0.00 37.66 3.79
150 151 4.166246 TCTGATAGGCTACTTCCTTCGA 57.834 45.455 0.00 0.00 37.66 3.71
151 152 4.730966 TCTGATAGGCTACTTCCTTCGAT 58.269 43.478 0.00 0.00 37.66 3.59
152 153 4.762765 TCTGATAGGCTACTTCCTTCGATC 59.237 45.833 0.00 0.00 37.66 3.69
153 154 4.730966 TGATAGGCTACTTCCTTCGATCT 58.269 43.478 0.00 0.00 37.66 2.75
154 155 5.877491 TGATAGGCTACTTCCTTCGATCTA 58.123 41.667 0.00 0.00 37.66 1.98
155 156 6.304624 TGATAGGCTACTTCCTTCGATCTAA 58.695 40.000 0.00 0.00 37.66 2.10
156 157 6.776116 TGATAGGCTACTTCCTTCGATCTAAA 59.224 38.462 0.00 0.00 37.66 1.85
157 158 7.451877 TGATAGGCTACTTCCTTCGATCTAAAT 59.548 37.037 0.00 0.00 37.66 1.40
158 159 6.487299 AGGCTACTTCCTTCGATCTAAATT 57.513 37.500 0.00 0.00 30.82 1.82
159 160 7.598759 AGGCTACTTCCTTCGATCTAAATTA 57.401 36.000 0.00 0.00 30.82 1.40
160 161 8.019656 AGGCTACTTCCTTCGATCTAAATTAA 57.980 34.615 0.00 0.00 30.82 1.40
161 162 8.652290 AGGCTACTTCCTTCGATCTAAATTAAT 58.348 33.333 0.00 0.00 30.82 1.40
162 163 9.274206 GGCTACTTCCTTCGATCTAAATTAATT 57.726 33.333 0.00 0.00 0.00 1.40
166 167 9.667107 ACTTCCTTCGATCTAAATTAATTGACA 57.333 29.630 0.39 0.00 0.00 3.58
167 168 9.922305 CTTCCTTCGATCTAAATTAATTGACAC 57.078 33.333 0.39 0.00 0.00 3.67
168 169 9.667107 TTCCTTCGATCTAAATTAATTGACACT 57.333 29.630 0.39 0.00 0.00 3.55
169 170 9.314321 TCCTTCGATCTAAATTAATTGACACTC 57.686 33.333 0.39 0.00 0.00 3.51
170 171 9.098355 CCTTCGATCTAAATTAATTGACACTCA 57.902 33.333 0.39 0.00 0.00 3.41
171 172 9.907576 CTTCGATCTAAATTAATTGACACTCAC 57.092 33.333 0.39 0.00 0.00 3.51
172 173 8.996024 TCGATCTAAATTAATTGACACTCACA 57.004 30.769 0.39 0.00 0.00 3.58
173 174 9.599866 TCGATCTAAATTAATTGACACTCACAT 57.400 29.630 0.39 0.00 0.00 3.21
224 225 7.817478 ACATTTAAAAGTAGTGCTATTTTGGGC 59.183 33.333 0.00 0.00 0.00 5.36
225 226 7.533289 TTTAAAAGTAGTGCTATTTTGGGCT 57.467 32.000 1.42 0.00 0.00 5.19
226 227 7.533289 TTAAAAGTAGTGCTATTTTGGGCTT 57.467 32.000 1.42 0.00 0.00 4.35
227 228 6.419484 AAAAGTAGTGCTATTTTGGGCTTT 57.581 33.333 1.42 0.00 0.00 3.51
228 229 5.644977 AAGTAGTGCTATTTTGGGCTTTC 57.355 39.130 0.00 0.00 0.00 2.62
229 230 3.689649 AGTAGTGCTATTTTGGGCTTTCG 59.310 43.478 0.00 0.00 0.00 3.46
230 231 1.818674 AGTGCTATTTTGGGCTTTCGG 59.181 47.619 0.00 0.00 0.00 4.30
231 232 0.530288 TGCTATTTTGGGCTTTCGGC 59.470 50.000 0.00 0.00 40.90 5.54
232 233 0.817654 GCTATTTTGGGCTTTCGGCT 59.182 50.000 0.00 0.00 41.46 5.52
233 234 1.469767 GCTATTTTGGGCTTTCGGCTG 60.470 52.381 0.00 0.00 41.46 4.85
234 235 1.134946 CTATTTTGGGCTTTCGGCTGG 59.865 52.381 0.00 0.00 41.46 4.85
235 236 1.543944 ATTTTGGGCTTTCGGCTGGG 61.544 55.000 0.00 0.00 41.46 4.45
260 261 2.842058 GCTCATGCCCAGGCCTAT 59.158 61.111 3.98 0.00 41.09 2.57
261 262 1.152368 GCTCATGCCCAGGCCTATT 59.848 57.895 3.98 0.00 41.09 1.73
262 263 0.468771 GCTCATGCCCAGGCCTATTT 60.469 55.000 3.98 0.00 41.09 1.40
263 264 1.613836 CTCATGCCCAGGCCTATTTC 58.386 55.000 3.98 0.00 41.09 2.17
264 265 0.185901 TCATGCCCAGGCCTATTTCC 59.814 55.000 3.98 0.00 41.09 3.13
265 266 0.186873 CATGCCCAGGCCTATTTCCT 59.813 55.000 3.98 0.00 41.09 3.36
270 271 0.183731 CCAGGCCTATTTCCTCCACC 59.816 60.000 3.98 0.00 0.00 4.61
276 277 3.447586 GGCCTATTTCCTCCACCTTTTTC 59.552 47.826 0.00 0.00 0.00 2.29
278 279 3.694566 CCTATTTCCTCCACCTTTTTCGG 59.305 47.826 0.00 0.00 0.00 4.30
279 280 2.740506 TTTCCTCCACCTTTTTCGGT 57.259 45.000 0.00 0.00 37.93 4.69
300 301 4.501400 GGTTCAATGACAAAAGGGACCAAG 60.501 45.833 0.00 0.00 0.00 3.61
303 304 2.452600 TGACAAAAGGGACCAAGCTT 57.547 45.000 0.00 0.00 0.00 3.74
339 341 4.020307 CCTTGCCCAACCAAATTACTTCAT 60.020 41.667 0.00 0.00 0.00 2.57
352 354 7.756722 CCAAATTACTTCATCACAGATTTGGTC 59.243 37.037 13.88 0.00 43.25 4.02
354 356 3.690460 ACTTCATCACAGATTTGGTCCC 58.310 45.455 0.00 0.00 0.00 4.46
358 361 1.741028 TCACAGATTTGGTCCCTGGA 58.259 50.000 0.00 0.00 32.52 3.86
361 364 3.117322 TCACAGATTTGGTCCCTGGAAAA 60.117 43.478 0.00 0.00 32.52 2.29
366 369 6.211384 ACAGATTTGGTCCCTGGAAAATTAAG 59.789 38.462 0.00 0.00 32.52 1.85
389 392 5.654650 AGTTTGGTTGTGAATCAAAGTACCA 59.345 36.000 1.36 0.00 37.81 3.25
390 393 5.508200 TTGGTTGTGAATCAAAGTACCAC 57.492 39.130 0.00 0.00 34.26 4.16
395 398 3.139397 TGTGAATCAAAGTACCACCCCTT 59.861 43.478 0.00 0.00 0.00 3.95
396 399 4.149598 GTGAATCAAAGTACCACCCCTTT 58.850 43.478 0.00 0.00 0.00 3.11
397 400 4.587262 GTGAATCAAAGTACCACCCCTTTT 59.413 41.667 0.00 0.00 0.00 2.27
398 401 5.069914 GTGAATCAAAGTACCACCCCTTTTT 59.930 40.000 0.00 0.00 0.00 1.94
399 402 5.303333 TGAATCAAAGTACCACCCCTTTTTC 59.697 40.000 0.00 0.00 0.00 2.29
400 403 3.215975 TCAAAGTACCACCCCTTTTTCG 58.784 45.455 0.00 0.00 0.00 3.46
401 404 3.117963 TCAAAGTACCACCCCTTTTTCGA 60.118 43.478 0.00 0.00 0.00 3.71
402 405 3.801307 AAGTACCACCCCTTTTTCGAT 57.199 42.857 0.00 0.00 0.00 3.59
403 406 4.914177 AAGTACCACCCCTTTTTCGATA 57.086 40.909 0.00 0.00 0.00 2.92
404 407 5.446260 AAGTACCACCCCTTTTTCGATAT 57.554 39.130 0.00 0.00 0.00 1.63
405 408 6.564557 AAGTACCACCCCTTTTTCGATATA 57.435 37.500 0.00 0.00 0.00 0.86
406 409 6.564557 AGTACCACCCCTTTTTCGATATAA 57.435 37.500 0.00 0.00 0.00 0.98
407 410 6.961042 AGTACCACCCCTTTTTCGATATAAA 58.039 36.000 0.00 0.00 0.00 1.40
408 411 7.052248 AGTACCACCCCTTTTTCGATATAAAG 58.948 38.462 7.74 7.74 0.00 1.85
409 412 5.198207 ACCACCCCTTTTTCGATATAAAGG 58.802 41.667 19.57 19.57 46.44 3.11
416 419 7.385778 CCTTTTTCGATATAAAGGGTGTTGA 57.614 36.000 19.09 0.00 44.26 3.18
417 420 7.822658 CCTTTTTCGATATAAAGGGTGTTGAA 58.177 34.615 19.09 0.00 44.26 2.69
418 421 7.968405 CCTTTTTCGATATAAAGGGTGTTGAAG 59.032 37.037 19.09 0.00 44.26 3.02
419 422 7.989416 TTTTCGATATAAAGGGTGTTGAAGT 57.011 32.000 0.00 0.00 0.00 3.01
420 423 9.504708 TTTTTCGATATAAAGGGTGTTGAAGTA 57.495 29.630 0.00 0.00 0.00 2.24
421 424 8.483307 TTTCGATATAAAGGGTGTTGAAGTAC 57.517 34.615 0.00 0.00 0.00 2.73
422 425 6.267817 TCGATATAAAGGGTGTTGAAGTACG 58.732 40.000 0.00 0.00 0.00 3.67
423 426 6.038356 CGATATAAAGGGTGTTGAAGTACGT 58.962 40.000 0.00 0.00 0.00 3.57
424 427 6.197842 CGATATAAAGGGTGTTGAAGTACGTC 59.802 42.308 1.40 1.40 0.00 4.34
425 428 2.538512 AAGGGTGTTGAAGTACGTCC 57.461 50.000 6.34 0.00 0.00 4.79
426 429 1.416243 AGGGTGTTGAAGTACGTCCA 58.584 50.000 6.34 0.00 0.00 4.02
427 430 1.069668 AGGGTGTTGAAGTACGTCCAC 59.930 52.381 6.34 6.23 0.00 4.02
430 433 2.937799 GGTGTTGAAGTACGTCCACAAA 59.062 45.455 15.46 0.00 0.00 2.83
525 530 5.303845 ACATACTCCCTCCGTTCCTAAATAC 59.696 44.000 0.00 0.00 0.00 1.89
526 531 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
527 532 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
534 539 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
538 543 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
539 544 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
543 548 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
546 551 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
547 552 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
548 553 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
549 554 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
550 555 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
551 556 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
552 557 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
553 558 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
554 559 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
566 571 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
619 624 7.833786 TCACTCATTTTACTCCGTATGTAGTT 58.166 34.615 0.00 0.00 0.00 2.24
620 625 8.959548 TCACTCATTTTACTCCGTATGTAGTTA 58.040 33.333 0.00 0.00 0.00 2.24
621 626 9.017669 CACTCATTTTACTCCGTATGTAGTTAC 57.982 37.037 0.00 0.00 0.00 2.50
623 628 9.798994 CTCATTTTACTCCGTATGTAGTTACTT 57.201 33.333 0.00 0.00 0.00 2.24
625 630 9.362539 CATTTTACTCCGTATGTAGTTACTTGT 57.637 33.333 0.00 0.00 0.00 3.16
626 631 9.933723 ATTTTACTCCGTATGTAGTTACTTGTT 57.066 29.630 0.00 0.00 0.00 2.83
627 632 8.746922 TTTACTCCGTATGTAGTTACTTGTTG 57.253 34.615 0.00 0.00 0.00 3.33
630 635 7.436118 ACTCCGTATGTAGTTACTTGTTGAAA 58.564 34.615 0.00 0.00 0.00 2.69
631 636 8.092687 ACTCCGTATGTAGTTACTTGTTGAAAT 58.907 33.333 0.00 0.00 0.00 2.17
632 637 8.246908 TCCGTATGTAGTTACTTGTTGAAATG 57.753 34.615 0.00 0.00 0.00 2.32
633 638 6.959311 CCGTATGTAGTTACTTGTTGAAATGC 59.041 38.462 0.00 0.00 0.00 3.56
637 642 7.667043 TGTAGTTACTTGTTGAAATGCCTAG 57.333 36.000 0.00 0.00 0.00 3.02
644 649 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
645 650 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
646 651 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
647 652 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
728 736 3.618594 GTGCTGCGGTGTCCATATATATG 59.381 47.826 14.78 14.78 0.00 1.78
736 744 6.735145 GCGGTGTCCATATATATGTAGCTACC 60.735 46.154 21.01 16.73 31.82 3.18
737 745 6.320418 CGGTGTCCATATATATGTAGCTACCA 59.680 42.308 21.01 9.44 31.82 3.25
738 746 7.468768 CGGTGTCCATATATATGTAGCTACCAG 60.469 44.444 21.01 12.15 31.82 4.00
756 1040 7.426929 CTACCAGTAGCATATTTTCCACATC 57.573 40.000 0.00 0.00 0.00 3.06
757 1041 4.816385 ACCAGTAGCATATTTTCCACATCG 59.184 41.667 0.00 0.00 0.00 3.84
822 1133 0.033601 TCCCATTTAAGCCACGCCAT 60.034 50.000 0.00 0.00 0.00 4.40
827 1138 0.885196 TTTAAGCCACGCCATTCCAC 59.115 50.000 0.00 0.00 0.00 4.02
844 1155 3.199671 TCCACTCCTCCTACTACCTCTT 58.800 50.000 0.00 0.00 0.00 2.85
846 1157 4.982956 TCCACTCCTCCTACTACCTCTTAT 59.017 45.833 0.00 0.00 0.00 1.73
854 1165 6.839657 CCTCCTACTACCTCTTATTCCTTTGA 59.160 42.308 0.00 0.00 0.00 2.69
909 1224 3.603158 AAAACAAAACACCCACTCCAC 57.397 42.857 0.00 0.00 0.00 4.02
949 1336 2.420129 GCATTTCGACCTAGACCACCAT 60.420 50.000 0.00 0.00 0.00 3.55
957 1344 1.001888 TAGACCACCATACCGGCCA 59.998 57.895 0.00 0.00 39.03 5.36
974 1361 1.955157 CAGCTGCTAGCAGATCCGC 60.955 63.158 41.87 28.91 45.56 5.54
992 1379 1.007271 CGACTCCTTGTGCGTGAGT 60.007 57.895 0.00 0.00 41.83 3.41
1184 1571 0.682852 TCCAACCCTGTAAGACCACG 59.317 55.000 0.00 0.00 34.07 4.94
1187 1574 2.290071 CCAACCCTGTAAGACCACGAAT 60.290 50.000 0.00 0.00 34.07 3.34
1204 1591 5.692204 CCACGAATCAGTACTCCATATGTTC 59.308 44.000 1.24 0.00 0.00 3.18
1262 1664 4.159506 ACTTAGTTAGCTGCTTCTCTCCAG 59.840 45.833 7.79 6.71 0.00 3.86
1263 1665 1.830477 AGTTAGCTGCTTCTCTCCAGG 59.170 52.381 7.79 0.00 0.00 4.45
1265 1667 1.670949 TAGCTGCTTCTCTCCAGGCG 61.671 60.000 7.79 0.00 0.00 5.52
1540 2117 6.211184 TGGAATGTGTTGCTTTCCTCATAAAT 59.789 34.615 11.42 0.00 46.09 1.40
1623 2230 6.299805 TGTTGATGAGATTAGCTACTGGTT 57.700 37.500 0.00 0.00 0.00 3.67
1624 2231 6.108687 TGTTGATGAGATTAGCTACTGGTTG 58.891 40.000 0.00 0.00 0.00 3.77
1682 2416 9.958285 GTACATATATACGAGCATTGAAACATG 57.042 33.333 0.00 0.00 0.00 3.21
1694 2428 7.719483 AGCATTGAAACATGGGTATCATTAAG 58.281 34.615 0.00 0.00 32.92 1.85
1717 2453 5.471456 AGCCTTGCCTCTATTTCATATTTCG 59.529 40.000 0.00 0.00 0.00 3.46
1757 2498 4.291249 ACAGCCCCAAGTTCCTAGAAATAA 59.709 41.667 0.00 0.00 0.00 1.40
1774 2515 9.803315 CTAGAAATAACAAGCTAGTGTCATGTA 57.197 33.333 0.00 0.00 0.00 2.29
1800 2848 6.210385 TGAAAGGCCAAGCTAACAATAAATCA 59.790 34.615 5.01 0.00 0.00 2.57
1900 2951 7.824289 TCTGTTTGAAATTACTATCAGGGTGAG 59.176 37.037 0.00 0.00 0.00 3.51
1901 2952 7.685481 TGTTTGAAATTACTATCAGGGTGAGA 58.315 34.615 0.00 0.00 0.00 3.27
1980 3042 5.204409 TGTACCAAGTACAACTTCGATGT 57.796 39.130 5.14 0.00 44.56 3.06
1981 3043 4.986034 TGTACCAAGTACAACTTCGATGTG 59.014 41.667 4.52 2.58 44.56 3.21
2053 3206 8.148999 GGACTAATATCCAACTAAGGACGAAAT 58.851 37.037 0.00 0.00 41.30 2.17
2054 3207 8.888579 ACTAATATCCAACTAAGGACGAAATG 57.111 34.615 0.00 0.00 41.30 2.32
2173 3343 6.405538 ACATTTGGGTGGCACAAATAAATAG 58.594 36.000 20.82 14.25 44.29 1.73
2180 3350 6.544564 GGGTGGCACAAATAAATAGTTAGCTA 59.455 38.462 20.82 0.00 44.16 3.32
2226 3524 9.516314 AGAAACAAAAAGTCTAAAGAAAATCCG 57.484 29.630 0.00 0.00 0.00 4.18
2292 3590 9.034544 CATACTCGAAAGATTTATCATGTGTGA 57.965 33.333 0.00 0.00 40.84 3.58
2511 3821 4.630644 ACATCAAGAAGCTCAAGGAGAA 57.369 40.909 0.00 0.00 0.00 2.87
2642 3952 3.146847 GGGTCACCAAAACGAGAGAAAT 58.853 45.455 0.00 0.00 36.50 2.17
2737 4047 0.179062 GCACAGAGAGGCCGATCATT 60.179 55.000 12.12 0.00 0.00 2.57
2743 4053 1.622811 GAGAGGCCGATCATTCTCCAT 59.377 52.381 6.22 0.00 31.95 3.41
2853 4516 0.184692 TCCCAGGTTGCACACATGAA 59.815 50.000 12.95 1.85 39.73 2.57
2941 4605 8.718102 ACGTTTTCTTCTAGTGTGCATATTAT 57.282 30.769 0.00 0.00 0.00 1.28
3078 4748 7.877003 TCGATGATTCCTCTCTATGTAGAAAC 58.123 38.462 0.00 0.00 0.00 2.78
3080 4750 9.004717 CGATGATTCCTCTCTATGTAGAAACTA 57.995 37.037 0.00 0.00 0.00 2.24
3119 4790 4.142513 GCTAGCCAAGAAGTTTGAGAATGG 60.143 45.833 2.29 0.00 0.00 3.16
3140 4813 4.290155 GGCATTAGATAAAACATGTGCCG 58.710 43.478 0.00 0.00 41.07 5.69
3196 4871 2.097825 TCTCCACCCGCTAGAACTTAC 58.902 52.381 0.00 0.00 0.00 2.34
3430 5109 5.605534 AGAGCATTGGTATGATAGTGTGTC 58.394 41.667 0.00 0.00 33.37 3.67
3508 5227 5.886609 TGGAAACAGACCCTTCATTATTCA 58.113 37.500 0.00 0.00 35.01 2.57
3509 5228 5.710099 TGGAAACAGACCCTTCATTATTCAC 59.290 40.000 0.00 0.00 35.01 3.18
3510 5229 5.710099 GGAAACAGACCCTTCATTATTCACA 59.290 40.000 0.00 0.00 0.00 3.58
3511 5230 6.208599 GGAAACAGACCCTTCATTATTCACAA 59.791 38.462 0.00 0.00 0.00 3.33
3512 5231 7.255801 GGAAACAGACCCTTCATTATTCACAAA 60.256 37.037 0.00 0.00 0.00 2.83
3513 5232 7.595819 AACAGACCCTTCATTATTCACAAAA 57.404 32.000 0.00 0.00 0.00 2.44
3514 5233 7.595819 ACAGACCCTTCATTATTCACAAAAA 57.404 32.000 0.00 0.00 0.00 1.94
3515 5234 7.661040 ACAGACCCTTCATTATTCACAAAAAG 58.339 34.615 0.00 0.00 0.00 2.27
3516 5235 7.505585 ACAGACCCTTCATTATTCACAAAAAGA 59.494 33.333 0.00 0.00 0.00 2.52
3517 5236 8.359642 CAGACCCTTCATTATTCACAAAAAGAA 58.640 33.333 0.00 0.00 0.00 2.52
3518 5237 8.923270 AGACCCTTCATTATTCACAAAAAGAAA 58.077 29.630 0.00 0.00 0.00 2.52
3519 5238 9.541143 GACCCTTCATTATTCACAAAAAGAAAA 57.459 29.630 0.00 0.00 0.00 2.29
3520 5239 9.898152 ACCCTTCATTATTCACAAAAAGAAAAA 57.102 25.926 0.00 0.00 0.00 1.94
3545 5264 7.603651 ACAGACCCTTCATTAGCTATATAACG 58.396 38.462 0.00 0.00 0.00 3.18
3618 5338 3.895232 TGCTCTTTGATCTACCACCTC 57.105 47.619 0.00 0.00 0.00 3.85
3619 5339 3.173151 TGCTCTTTGATCTACCACCTCA 58.827 45.455 0.00 0.00 0.00 3.86
3649 5369 3.995199 ACAGTAACCATGTCTGTCTGTG 58.005 45.455 0.00 0.00 37.84 3.66
3654 5374 1.349026 ACCATGTCTGTCTGTGAAGGG 59.651 52.381 0.00 0.00 0.00 3.95
3664 5384 3.055021 TGTCTGTGAAGGGTTGTTGTACA 60.055 43.478 0.00 0.00 0.00 2.90
3742 5468 2.125024 GCATGGTGCAAATGCCCC 60.125 61.111 20.04 0.91 43.78 5.80
3746 5472 1.753470 TGGTGCAAATGCCCCAAAG 59.247 52.632 7.15 0.00 45.42 2.77
3859 5586 7.639945 GCAAAGAGCGGTAAATACTATGAATT 58.360 34.615 0.00 0.00 0.00 2.17
3961 5688 6.772233 TGTTCTCTCAACATCCAGATTTTGAA 59.228 34.615 9.75 2.69 37.14 2.69
3964 5691 8.048534 TCTCTCAACATCCAGATTTTGAAATC 57.951 34.615 9.75 8.11 43.96 2.17
3971 5698 3.381272 TCCAGATTTTGAAATCCGGATGC 59.619 43.478 19.95 14.03 43.54 3.91
4094 6122 9.953825 GTTATGTTGACTAAAGTATCAAACGAG 57.046 33.333 0.00 0.00 36.62 4.18
4110 6138 6.845908 TCAAACGAGGGAGTATACTATAGGT 58.154 40.000 5.09 0.00 0.00 3.08
4161 6189 8.384365 GTCGTTCCAAATTAGAGAAAGAGATTC 58.616 37.037 0.00 0.00 38.39 2.52
4178 6209 8.489676 AAGAGATTCTAAATGAGAGGCAGATA 57.510 34.615 0.00 0.00 34.93 1.98
4252 6283 1.110442 TTTTGGGCCCATTAGATGCG 58.890 50.000 29.23 0.00 0.00 4.73
4333 6365 2.474410 AAGCTTACCAGGAAGGAACG 57.526 50.000 0.00 0.00 41.22 3.95
4420 6452 6.111382 TCTTTTGTTGAAAATTGCATCCACA 58.889 32.000 0.00 0.00 30.59 4.17
4421 6453 6.766944 TCTTTTGTTGAAAATTGCATCCACAT 59.233 30.769 0.00 0.00 30.59 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.074775 TGCCGGATTTGACAAGCCT 59.925 52.632 5.05 0.00 36.17 4.58
2 3 1.212751 GGTGCCGGATTTGACAAGC 59.787 57.895 5.05 0.00 0.00 4.01
3 4 0.609131 AGGGTGCCGGATTTGACAAG 60.609 55.000 5.05 0.00 0.00 3.16
4 5 0.693622 TAGGGTGCCGGATTTGACAA 59.306 50.000 5.05 0.00 0.00 3.18
5 6 0.916086 ATAGGGTGCCGGATTTGACA 59.084 50.000 5.05 0.00 0.00 3.58
6 7 1.308998 CATAGGGTGCCGGATTTGAC 58.691 55.000 5.05 0.00 0.00 3.18
8 9 1.455383 GCCATAGGGTGCCGGATTTG 61.455 60.000 5.05 0.00 36.17 2.32
9 10 1.152756 GCCATAGGGTGCCGGATTT 60.153 57.895 5.05 0.00 36.17 2.17
10 11 2.343475 CTGCCATAGGGTGCCGGATT 62.343 60.000 5.05 0.00 36.17 3.01
11 12 2.772191 TGCCATAGGGTGCCGGAT 60.772 61.111 5.05 0.00 36.17 4.18
12 13 3.479203 CTGCCATAGGGTGCCGGA 61.479 66.667 5.05 0.00 36.17 5.14
17 18 4.569180 CCCGGCTGCCATAGGGTG 62.569 72.222 20.29 0.00 39.05 4.61
33 34 4.740822 AATGTCCCCCTGCGTGCC 62.741 66.667 0.00 0.00 0.00 5.01
34 35 3.443045 CAATGTCCCCCTGCGTGC 61.443 66.667 0.00 0.00 0.00 5.34
35 36 2.751436 CCAATGTCCCCCTGCGTG 60.751 66.667 0.00 0.00 0.00 5.34
36 37 3.256960 ACCAATGTCCCCCTGCGT 61.257 61.111 0.00 0.00 0.00 5.24
37 38 2.751436 CACCAATGTCCCCCTGCG 60.751 66.667 0.00 0.00 0.00 5.18
38 39 3.070576 GCACCAATGTCCCCCTGC 61.071 66.667 0.00 0.00 0.00 4.85
39 40 0.831288 TTTGCACCAATGTCCCCCTG 60.831 55.000 0.00 0.00 0.00 4.45
40 41 0.542702 CTTTGCACCAATGTCCCCCT 60.543 55.000 0.00 0.00 0.00 4.79
41 42 0.541764 TCTTTGCACCAATGTCCCCC 60.542 55.000 0.00 0.00 0.00 5.40
42 43 1.560505 ATCTTTGCACCAATGTCCCC 58.439 50.000 0.00 0.00 0.00 4.81
43 44 3.068590 CCATATCTTTGCACCAATGTCCC 59.931 47.826 0.00 0.00 0.00 4.46
44 45 3.068590 CCCATATCTTTGCACCAATGTCC 59.931 47.826 0.00 0.00 0.00 4.02
45 46 3.701040 ACCCATATCTTTGCACCAATGTC 59.299 43.478 0.00 0.00 0.00 3.06
46 47 3.448301 CACCCATATCTTTGCACCAATGT 59.552 43.478 0.00 0.00 0.00 2.71
47 48 3.700539 TCACCCATATCTTTGCACCAATG 59.299 43.478 0.00 0.00 0.00 2.82
48 49 3.956199 CTCACCCATATCTTTGCACCAAT 59.044 43.478 0.00 0.00 0.00 3.16
49 50 3.010027 TCTCACCCATATCTTTGCACCAA 59.990 43.478 0.00 0.00 0.00 3.67
50 51 2.575735 TCTCACCCATATCTTTGCACCA 59.424 45.455 0.00 0.00 0.00 4.17
51 52 3.281727 TCTCACCCATATCTTTGCACC 57.718 47.619 0.00 0.00 0.00 5.01
52 53 3.065925 GCTTCTCACCCATATCTTTGCAC 59.934 47.826 0.00 0.00 0.00 4.57
53 54 3.282021 GCTTCTCACCCATATCTTTGCA 58.718 45.455 0.00 0.00 0.00 4.08
54 55 3.282021 TGCTTCTCACCCATATCTTTGC 58.718 45.455 0.00 0.00 0.00 3.68
55 56 4.201851 CGTTGCTTCTCACCCATATCTTTG 60.202 45.833 0.00 0.00 0.00 2.77
56 57 3.941483 CGTTGCTTCTCACCCATATCTTT 59.059 43.478 0.00 0.00 0.00 2.52
57 58 3.055094 ACGTTGCTTCTCACCCATATCTT 60.055 43.478 0.00 0.00 0.00 2.40
58 59 2.501723 ACGTTGCTTCTCACCCATATCT 59.498 45.455 0.00 0.00 0.00 1.98
59 60 2.906354 ACGTTGCTTCTCACCCATATC 58.094 47.619 0.00 0.00 0.00 1.63
60 61 3.009723 CAACGTTGCTTCTCACCCATAT 58.990 45.455 16.51 0.00 0.00 1.78
61 62 2.422597 CAACGTTGCTTCTCACCCATA 58.577 47.619 16.51 0.00 0.00 2.74
62 63 1.238439 CAACGTTGCTTCTCACCCAT 58.762 50.000 16.51 0.00 0.00 4.00
63 64 2.701587 CAACGTTGCTTCTCACCCA 58.298 52.632 16.51 0.00 0.00 4.51
74 75 0.248866 GTTTCCACCCTGCAACGTTG 60.249 55.000 23.90 23.90 0.00 4.10
75 76 0.395173 AGTTTCCACCCTGCAACGTT 60.395 50.000 0.00 0.00 0.00 3.99
76 77 0.395173 AAGTTTCCACCCTGCAACGT 60.395 50.000 0.00 0.00 0.00 3.99
77 78 0.310854 GAAGTTTCCACCCTGCAACG 59.689 55.000 0.00 0.00 0.00 4.10
78 79 1.338020 CAGAAGTTTCCACCCTGCAAC 59.662 52.381 0.00 0.00 0.00 4.17
79 80 1.691196 CAGAAGTTTCCACCCTGCAA 58.309 50.000 0.00 0.00 0.00 4.08
80 81 0.823356 GCAGAAGTTTCCACCCTGCA 60.823 55.000 0.00 0.00 43.97 4.41
81 82 1.527433 GGCAGAAGTTTCCACCCTGC 61.527 60.000 0.00 0.00 43.88 4.85
82 83 1.237285 CGGCAGAAGTTTCCACCCTG 61.237 60.000 0.00 0.00 0.00 4.45
83 84 1.073199 CGGCAGAAGTTTCCACCCT 59.927 57.895 0.00 0.00 0.00 4.34
84 85 1.971695 CCGGCAGAAGTTTCCACCC 60.972 63.158 0.00 0.00 0.00 4.61
85 86 1.971695 CCCGGCAGAAGTTTCCACC 60.972 63.158 0.00 0.00 0.00 4.61
86 87 1.228154 ACCCGGCAGAAGTTTCCAC 60.228 57.895 0.00 0.00 0.00 4.02
87 88 1.228124 CACCCGGCAGAAGTTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
88 89 0.955919 CTCACCCGGCAGAAGTTTCC 60.956 60.000 0.00 0.00 0.00 3.13
89 90 0.034896 TCTCACCCGGCAGAAGTTTC 59.965 55.000 0.00 0.00 0.00 2.78
90 91 0.035458 CTCTCACCCGGCAGAAGTTT 59.965 55.000 0.00 0.00 0.00 2.66
91 92 1.122019 ACTCTCACCCGGCAGAAGTT 61.122 55.000 0.00 0.00 0.00 2.66
92 93 0.251653 TACTCTCACCCGGCAGAAGT 60.252 55.000 0.00 5.38 0.00 3.01
93 94 0.457851 CTACTCTCACCCGGCAGAAG 59.542 60.000 0.00 0.00 0.00 2.85
94 95 0.970937 CCTACTCTCACCCGGCAGAA 60.971 60.000 0.00 0.00 0.00 3.02
95 96 1.379977 CCTACTCTCACCCGGCAGA 60.380 63.158 0.00 0.00 0.00 4.26
96 97 3.082579 GCCTACTCTCACCCGGCAG 62.083 68.421 0.00 0.00 40.41 4.85
97 98 2.219449 TAGCCTACTCTCACCCGGCA 62.219 60.000 0.00 0.00 43.07 5.69
98 99 1.455217 TAGCCTACTCTCACCCGGC 60.455 63.158 0.00 0.00 40.99 6.13
99 100 0.395311 TGTAGCCTACTCTCACCCGG 60.395 60.000 3.13 0.00 0.00 5.73
100 101 1.471119 TTGTAGCCTACTCTCACCCG 58.529 55.000 3.13 0.00 0.00 5.28
101 102 4.489306 AAATTGTAGCCTACTCTCACCC 57.511 45.455 3.13 0.00 0.00 4.61
102 103 6.875076 TCTAAAATTGTAGCCTACTCTCACC 58.125 40.000 3.13 0.00 0.00 4.02
103 104 7.548967 ACTCTAAAATTGTAGCCTACTCTCAC 58.451 38.462 3.13 0.00 0.00 3.51
104 105 7.719871 ACTCTAAAATTGTAGCCTACTCTCA 57.280 36.000 3.13 0.00 0.00 3.27
105 106 8.471609 AGAACTCTAAAATTGTAGCCTACTCTC 58.528 37.037 3.13 0.00 0.00 3.20
106 107 8.254508 CAGAACTCTAAAATTGTAGCCTACTCT 58.745 37.037 3.13 0.00 0.00 3.24
107 108 8.251721 TCAGAACTCTAAAATTGTAGCCTACTC 58.748 37.037 3.13 0.00 0.00 2.59
108 109 8.135382 TCAGAACTCTAAAATTGTAGCCTACT 57.865 34.615 3.13 0.00 0.00 2.57
109 110 8.950208 ATCAGAACTCTAAAATTGTAGCCTAC 57.050 34.615 0.00 0.00 0.00 3.18
111 112 8.207545 CCTATCAGAACTCTAAAATTGTAGCCT 58.792 37.037 0.00 0.00 0.00 4.58
112 113 7.041712 GCCTATCAGAACTCTAAAATTGTAGCC 60.042 40.741 0.00 0.00 0.00 3.93
113 114 7.713073 AGCCTATCAGAACTCTAAAATTGTAGC 59.287 37.037 0.00 0.00 0.00 3.58
116 117 8.763601 AGTAGCCTATCAGAACTCTAAAATTGT 58.236 33.333 0.00 0.00 0.00 2.71
117 118 9.606631 AAGTAGCCTATCAGAACTCTAAAATTG 57.393 33.333 0.00 0.00 0.00 2.32
118 119 9.825109 GAAGTAGCCTATCAGAACTCTAAAATT 57.175 33.333 0.00 0.00 0.00 1.82
119 120 8.425703 GGAAGTAGCCTATCAGAACTCTAAAAT 58.574 37.037 0.00 0.00 0.00 1.82
120 121 7.620094 AGGAAGTAGCCTATCAGAACTCTAAAA 59.380 37.037 0.00 0.00 36.22 1.52
121 122 7.126733 AGGAAGTAGCCTATCAGAACTCTAAA 58.873 38.462 0.00 0.00 36.22 1.85
122 123 6.674573 AGGAAGTAGCCTATCAGAACTCTAA 58.325 40.000 0.00 0.00 36.22 2.10
123 124 6.268855 AGGAAGTAGCCTATCAGAACTCTA 57.731 41.667 0.00 0.00 36.22 2.43
124 125 5.137412 AGGAAGTAGCCTATCAGAACTCT 57.863 43.478 0.00 0.00 36.22 3.24
125 126 5.506649 CGAAGGAAGTAGCCTATCAGAACTC 60.507 48.000 0.00 0.00 37.26 3.01
126 127 4.339814 CGAAGGAAGTAGCCTATCAGAACT 59.660 45.833 0.00 0.00 37.26 3.01
127 128 4.338682 TCGAAGGAAGTAGCCTATCAGAAC 59.661 45.833 0.00 0.00 37.26 3.01
128 129 4.533815 TCGAAGGAAGTAGCCTATCAGAA 58.466 43.478 0.00 0.00 37.26 3.02
129 130 4.166246 TCGAAGGAAGTAGCCTATCAGA 57.834 45.455 0.00 0.00 37.26 3.27
130 131 4.764823 AGATCGAAGGAAGTAGCCTATCAG 59.235 45.833 0.00 0.00 37.26 2.90
131 132 4.730966 AGATCGAAGGAAGTAGCCTATCA 58.269 43.478 0.00 0.00 37.26 2.15
132 133 6.821031 TTAGATCGAAGGAAGTAGCCTATC 57.179 41.667 0.00 0.00 37.26 2.08
133 134 7.784470 ATTTAGATCGAAGGAAGTAGCCTAT 57.216 36.000 0.00 0.00 37.26 2.57
134 135 7.598759 AATTTAGATCGAAGGAAGTAGCCTA 57.401 36.000 0.00 0.00 37.26 3.93
135 136 6.487299 AATTTAGATCGAAGGAAGTAGCCT 57.513 37.500 0.00 0.00 40.93 4.58
136 137 8.834749 ATTAATTTAGATCGAAGGAAGTAGCC 57.165 34.615 0.00 0.00 0.00 3.93
140 141 9.667107 TGTCAATTAATTTAGATCGAAGGAAGT 57.333 29.630 0.00 0.00 0.00 3.01
141 142 9.922305 GTGTCAATTAATTTAGATCGAAGGAAG 57.078 33.333 0.00 0.00 0.00 3.46
142 143 9.667107 AGTGTCAATTAATTTAGATCGAAGGAA 57.333 29.630 0.00 0.00 0.00 3.36
143 144 9.314321 GAGTGTCAATTAATTTAGATCGAAGGA 57.686 33.333 0.00 0.00 0.00 3.36
144 145 9.098355 TGAGTGTCAATTAATTTAGATCGAAGG 57.902 33.333 0.00 0.00 0.00 3.46
145 146 9.907576 GTGAGTGTCAATTAATTTAGATCGAAG 57.092 33.333 0.00 0.00 0.00 3.79
146 147 9.430623 TGTGAGTGTCAATTAATTTAGATCGAA 57.569 29.630 0.00 0.00 0.00 3.71
147 148 8.996024 TGTGAGTGTCAATTAATTTAGATCGA 57.004 30.769 0.00 0.00 0.00 3.59
198 199 7.817478 GCCCAAAATAGCACTACTTTTAAATGT 59.183 33.333 11.09 11.09 0.00 2.71
199 200 8.034804 AGCCCAAAATAGCACTACTTTTAAATG 58.965 33.333 0.00 0.00 0.00 2.32
200 201 8.134202 AGCCCAAAATAGCACTACTTTTAAAT 57.866 30.769 0.00 0.00 0.00 1.40
201 202 7.533289 AGCCCAAAATAGCACTACTTTTAAA 57.467 32.000 0.00 0.00 0.00 1.52
202 203 7.533289 AAGCCCAAAATAGCACTACTTTTAA 57.467 32.000 0.00 0.00 0.00 1.52
203 204 7.533289 AAAGCCCAAAATAGCACTACTTTTA 57.467 32.000 0.00 0.00 0.00 1.52
204 205 6.419484 AAAGCCCAAAATAGCACTACTTTT 57.581 33.333 0.00 0.00 0.00 2.27
205 206 5.335661 CGAAAGCCCAAAATAGCACTACTTT 60.336 40.000 0.00 0.00 0.00 2.66
206 207 4.156008 CGAAAGCCCAAAATAGCACTACTT 59.844 41.667 0.00 0.00 0.00 2.24
207 208 3.689649 CGAAAGCCCAAAATAGCACTACT 59.310 43.478 0.00 0.00 0.00 2.57
208 209 3.181500 CCGAAAGCCCAAAATAGCACTAC 60.181 47.826 0.00 0.00 0.00 2.73
209 210 3.013921 CCGAAAGCCCAAAATAGCACTA 58.986 45.455 0.00 0.00 0.00 2.74
210 211 1.818674 CCGAAAGCCCAAAATAGCACT 59.181 47.619 0.00 0.00 0.00 4.40
211 212 1.735700 GCCGAAAGCCCAAAATAGCAC 60.736 52.381 0.00 0.00 34.35 4.40
212 213 0.530288 GCCGAAAGCCCAAAATAGCA 59.470 50.000 0.00 0.00 34.35 3.49
213 214 0.817654 AGCCGAAAGCCCAAAATAGC 59.182 50.000 0.00 0.00 45.47 2.97
214 215 1.134946 CCAGCCGAAAGCCCAAAATAG 59.865 52.381 0.00 0.00 45.47 1.73
215 216 1.181786 CCAGCCGAAAGCCCAAAATA 58.818 50.000 0.00 0.00 45.47 1.40
216 217 1.543944 CCCAGCCGAAAGCCCAAAAT 61.544 55.000 0.00 0.00 45.47 1.82
217 218 2.206536 CCCAGCCGAAAGCCCAAAA 61.207 57.895 0.00 0.00 45.47 2.44
218 219 2.600173 CCCAGCCGAAAGCCCAAA 60.600 61.111 0.00 0.00 45.47 3.28
243 244 0.468771 AAATAGGCCTGGGCATGAGC 60.469 55.000 23.25 0.00 44.11 4.26
244 245 1.613836 GAAATAGGCCTGGGCATGAG 58.386 55.000 23.25 0.00 44.11 2.90
245 246 0.185901 GGAAATAGGCCTGGGCATGA 59.814 55.000 23.25 7.50 44.11 3.07
246 247 0.186873 AGGAAATAGGCCTGGGCATG 59.813 55.000 23.25 0.00 44.11 4.06
247 248 0.480252 GAGGAAATAGGCCTGGGCAT 59.520 55.000 23.25 10.44 44.11 4.40
248 249 1.645402 GGAGGAAATAGGCCTGGGCA 61.645 60.000 23.25 8.87 44.11 5.36
249 250 1.151679 GGAGGAAATAGGCCTGGGC 59.848 63.158 17.99 13.15 35.44 5.36
250 251 0.183731 GTGGAGGAAATAGGCCTGGG 59.816 60.000 17.99 0.00 35.44 4.45
251 252 0.183731 GGTGGAGGAAATAGGCCTGG 59.816 60.000 17.99 0.00 35.44 4.45
252 253 1.216990 AGGTGGAGGAAATAGGCCTG 58.783 55.000 17.99 0.00 35.44 4.85
253 254 1.987080 AAGGTGGAGGAAATAGGCCT 58.013 50.000 11.78 11.78 38.81 5.19
254 255 2.828661 AAAGGTGGAGGAAATAGGCC 57.171 50.000 0.00 0.00 0.00 5.19
255 256 3.128764 CGAAAAAGGTGGAGGAAATAGGC 59.871 47.826 0.00 0.00 0.00 3.93
256 257 3.694566 CCGAAAAAGGTGGAGGAAATAGG 59.305 47.826 0.00 0.00 0.00 2.57
257 258 4.332828 ACCGAAAAAGGTGGAGGAAATAG 58.667 43.478 0.00 0.00 44.07 1.73
258 259 4.376225 ACCGAAAAAGGTGGAGGAAATA 57.624 40.909 0.00 0.00 44.07 1.40
259 260 3.238788 ACCGAAAAAGGTGGAGGAAAT 57.761 42.857 0.00 0.00 44.07 2.17
260 261 2.740506 ACCGAAAAAGGTGGAGGAAA 57.259 45.000 0.00 0.00 44.07 3.13
261 262 2.092321 TGAACCGAAAAAGGTGGAGGAA 60.092 45.455 0.00 0.00 45.21 3.36
262 263 1.491332 TGAACCGAAAAAGGTGGAGGA 59.509 47.619 0.00 0.00 45.21 3.71
263 264 1.975660 TGAACCGAAAAAGGTGGAGG 58.024 50.000 0.00 0.00 45.21 4.30
264 265 3.568007 TCATTGAACCGAAAAAGGTGGAG 59.432 43.478 0.00 0.00 45.21 3.86
265 266 3.316868 GTCATTGAACCGAAAAAGGTGGA 59.683 43.478 0.00 0.00 45.21 4.02
270 271 5.234116 CCCTTTTGTCATTGAACCGAAAAAG 59.766 40.000 0.00 0.00 34.49 2.27
276 277 2.030274 GGTCCCTTTTGTCATTGAACCG 60.030 50.000 0.00 0.00 0.00 4.44
278 279 4.620982 CTTGGTCCCTTTTGTCATTGAAC 58.379 43.478 0.00 0.00 0.00 3.18
279 280 3.069443 GCTTGGTCCCTTTTGTCATTGAA 59.931 43.478 0.00 0.00 0.00 2.69
339 341 1.741028 TCCAGGGACCAAATCTGTGA 58.259 50.000 0.00 0.00 0.00 3.58
352 354 5.757808 CACAACCAAACTTAATTTTCCAGGG 59.242 40.000 0.00 0.00 0.00 4.45
354 356 8.661352 ATTCACAACCAAACTTAATTTTCCAG 57.339 30.769 0.00 0.00 0.00 3.86
361 364 9.744468 GTACTTTGATTCACAACCAAACTTAAT 57.256 29.630 0.00 0.00 38.29 1.40
366 369 5.746721 GTGGTACTTTGATTCACAACCAAAC 59.253 40.000 9.12 0.00 37.40 2.93
395 398 7.989416 ACTTCAACACCCTTTATATCGAAAA 57.011 32.000 0.00 0.00 0.00 2.29
396 399 7.276218 CGTACTTCAACACCCTTTATATCGAAA 59.724 37.037 0.00 0.00 0.00 3.46
397 400 6.753279 CGTACTTCAACACCCTTTATATCGAA 59.247 38.462 0.00 0.00 0.00 3.71
398 401 6.127647 ACGTACTTCAACACCCTTTATATCGA 60.128 38.462 0.00 0.00 0.00 3.59
399 402 6.038356 ACGTACTTCAACACCCTTTATATCG 58.962 40.000 0.00 0.00 0.00 2.92
400 403 6.478016 GGACGTACTTCAACACCCTTTATATC 59.522 42.308 1.42 0.00 0.00 1.63
401 404 6.070653 TGGACGTACTTCAACACCCTTTATAT 60.071 38.462 0.00 0.00 0.00 0.86
402 405 5.245751 TGGACGTACTTCAACACCCTTTATA 59.754 40.000 0.00 0.00 0.00 0.98
403 406 4.040706 TGGACGTACTTCAACACCCTTTAT 59.959 41.667 0.00 0.00 0.00 1.40
404 407 3.387374 TGGACGTACTTCAACACCCTTTA 59.613 43.478 0.00 0.00 0.00 1.85
405 408 2.171027 TGGACGTACTTCAACACCCTTT 59.829 45.455 0.00 0.00 0.00 3.11
406 409 1.764134 TGGACGTACTTCAACACCCTT 59.236 47.619 0.00 0.00 0.00 3.95
407 410 1.069668 GTGGACGTACTTCAACACCCT 59.930 52.381 0.00 0.00 0.00 4.34
408 411 1.202557 TGTGGACGTACTTCAACACCC 60.203 52.381 5.49 0.00 0.00 4.61
409 412 2.228138 TGTGGACGTACTTCAACACC 57.772 50.000 5.49 0.00 0.00 4.16
410 413 4.603231 TTTTGTGGACGTACTTCAACAC 57.397 40.909 9.01 5.61 0.00 3.32
411 414 5.821516 ATTTTTGTGGACGTACTTCAACA 57.178 34.783 5.49 5.49 0.00 3.33
412 415 8.617761 TTTTATTTTTGTGGACGTACTTCAAC 57.382 30.769 0.00 0.00 0.00 3.18
449 452 2.641815 GAGGGAGCACCAGAATATCCAT 59.358 50.000 1.58 0.00 43.89 3.41
525 530 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
526 531 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
527 532 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
534 539 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
538 543 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
539 544 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
543 548 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
619 624 6.995686 TGTCTTTCTAGGCATTTCAACAAGTA 59.004 34.615 0.00 0.00 29.10 2.24
620 625 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
621 626 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
623 628 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
625 630 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
626 631 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
630 635 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
631 636 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
632 637 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
633 638 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
637 642 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
644 649 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
645 650 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
646 651 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
647 652 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
698 706 2.967076 ACCGCAGCACACGAACAG 60.967 61.111 0.00 0.00 0.00 3.16
736 744 6.128445 GGATCGATGTGGAAAATATGCTACTG 60.128 42.308 0.54 0.00 0.00 2.74
737 745 5.934625 GGATCGATGTGGAAAATATGCTACT 59.065 40.000 0.54 0.00 0.00 2.57
738 746 5.163953 CGGATCGATGTGGAAAATATGCTAC 60.164 44.000 0.54 0.00 0.00 3.58
822 1133 3.199671 AGAGGTAGTAGGAGGAGTGGAA 58.800 50.000 0.00 0.00 0.00 3.53
827 1138 6.208840 AGGAATAAGAGGTAGTAGGAGGAG 57.791 45.833 0.00 0.00 0.00 3.69
846 1157 7.611855 GGTAGGAGATGAAGAATTTCAAAGGAA 59.388 37.037 0.00 0.00 45.82 3.36
854 1165 5.428131 AGCAGAGGTAGGAGATGAAGAATTT 59.572 40.000 0.00 0.00 0.00 1.82
909 1224 0.179062 CAACCAGGCTGCTAGCTAGG 60.179 60.000 22.10 12.30 41.99 3.02
949 1336 3.849951 GCTAGCAGCTGGCCGGTA 61.850 66.667 19.83 0.00 46.50 4.02
957 1344 2.420890 GCGGATCTGCTAGCAGCT 59.579 61.111 35.21 28.38 42.97 4.24
974 1361 1.007271 ACTCACGCACAAGGAGTCG 60.007 57.895 0.00 0.00 37.31 4.18
992 1379 0.247460 CTGCACCTCCATCTCGAACA 59.753 55.000 0.00 0.00 0.00 3.18
1262 1664 1.560860 GCCAGATCGATTAGCACGCC 61.561 60.000 0.00 0.00 0.00 5.68
1263 1665 1.560860 GGCCAGATCGATTAGCACGC 61.561 60.000 14.63 5.34 0.00 5.34
1265 1667 0.106708 TGGGCCAGATCGATTAGCAC 59.893 55.000 0.00 12.30 0.00 4.40
1383 1828 8.375506 TGGATACTGGTGGATACTGAATTAATC 58.624 37.037 0.00 0.00 35.02 1.75
1384 1829 8.275187 TGGATACTGGTGGATACTGAATTAAT 57.725 34.615 0.00 0.00 35.02 1.40
1385 1830 7.684317 TGGATACTGGTGGATACTGAATTAA 57.316 36.000 0.00 0.00 35.02 1.40
1466 2043 1.207329 ACGTAGACCTCAATTGCTCCC 59.793 52.381 0.00 0.00 0.00 4.30
1479 2056 2.711924 CCGAGGCCGTACGTAGAC 59.288 66.667 15.21 1.30 0.00 2.59
1600 2190 5.939764 ACCAGTAGCTAATCTCATCAACA 57.060 39.130 0.00 0.00 0.00 3.33
1601 2191 6.341316 TCAACCAGTAGCTAATCTCATCAAC 58.659 40.000 0.00 0.00 0.00 3.18
1602 2192 6.544928 TCAACCAGTAGCTAATCTCATCAA 57.455 37.500 0.00 0.00 0.00 2.57
1603 2193 6.544928 TTCAACCAGTAGCTAATCTCATCA 57.455 37.500 0.00 0.00 0.00 3.07
1604 2194 7.212976 TGATTCAACCAGTAGCTAATCTCATC 58.787 38.462 0.00 0.00 0.00 2.92
1605 2195 7.129457 TGATTCAACCAGTAGCTAATCTCAT 57.871 36.000 0.00 0.00 0.00 2.90
1609 2211 5.762218 AGCATGATTCAACCAGTAGCTAATC 59.238 40.000 0.00 0.00 0.00 1.75
1623 2230 6.403527 CGTGAGGTCAAAATAAGCATGATTCA 60.404 38.462 0.00 0.00 0.00 2.57
1624 2231 5.967674 CGTGAGGTCAAAATAAGCATGATTC 59.032 40.000 0.00 0.00 0.00 2.52
1682 2416 3.149981 GAGGCAAGGCTTAATGATACCC 58.850 50.000 0.00 0.00 0.00 3.69
1694 2428 5.335191 CCGAAATATGAAATAGAGGCAAGGC 60.335 44.000 0.00 0.00 28.50 4.35
1717 2453 5.105351 GGGGCTGTATATTCAAAATATGCCC 60.105 44.000 20.20 20.20 43.39 5.36
1757 2498 5.877012 CCTTTCATACATGACACTAGCTTGT 59.123 40.000 0.00 0.00 36.36 3.16
1774 2515 6.603940 TTTATTGTTAGCTTGGCCTTTCAT 57.396 33.333 3.32 0.00 0.00 2.57
1900 2951 3.944015 CTCATCCCTGAGTTCCATTTGTC 59.056 47.826 0.00 0.00 43.35 3.18
1901 2952 3.960571 CTCATCCCTGAGTTCCATTTGT 58.039 45.455 0.00 0.00 43.35 2.83
1980 3042 9.605275 CTCAAAAATCTCACTTCATACTATCCA 57.395 33.333 0.00 0.00 0.00 3.41
1981 3043 9.823647 TCTCAAAAATCTCACTTCATACTATCC 57.176 33.333 0.00 0.00 0.00 2.59
2034 3187 6.469410 ACAACATTTCGTCCTTAGTTGGATA 58.531 36.000 0.00 0.00 40.29 2.59
2068 3222 6.817765 ATTTTCATCCTGTGTACATCGTTT 57.182 33.333 0.00 0.00 0.00 3.60
2112 3266 9.383519 CTACAAGGCATTCTTTCTTATCAGTTA 57.616 33.333 0.00 0.00 32.41 2.24
2226 3524 7.617041 AATCATCTCCTGTAAAACTAACAGC 57.383 36.000 0.00 0.00 42.47 4.40
2268 3566 9.599866 AATCACACATGATAAATCTTTCGAGTA 57.400 29.630 0.00 0.00 45.26 2.59
2424 3734 6.163476 TCCTATATACACATTTAAGGCGCAG 58.837 40.000 10.83 0.00 0.00 5.18
2511 3821 0.532573 ATGATGCAACTCGTCGACCT 59.467 50.000 10.58 0.00 33.35 3.85
2630 3940 4.200092 GCCTCCCAATATTTCTCTCGTTT 58.800 43.478 0.00 0.00 0.00 3.60
2642 3952 1.148273 GTGCCGATGCCTCCCAATA 59.852 57.895 0.00 0.00 36.33 1.90
2682 3992 3.492383 CACATCCAAGCTCGTATCATCAC 59.508 47.826 0.00 0.00 0.00 3.06
2761 4071 1.219393 CTCGGCACCTTCTTCCTCC 59.781 63.158 0.00 0.00 0.00 4.30
2853 4516 9.872684 ATTTATGGTCAAGATGAATACTTGGAT 57.127 29.630 0.00 0.00 43.11 3.41
2996 4663 1.280710 TCATCTTCCCTTTGCGCCTTA 59.719 47.619 4.18 0.00 0.00 2.69
3002 4669 4.741342 CATCACTTTCATCTTCCCTTTGC 58.259 43.478 0.00 0.00 0.00 3.68
3078 4748 5.410924 GCTAGCTTTCCCCAATTTTGTTAG 58.589 41.667 7.70 0.00 0.00 2.34
3080 4750 3.007940 GGCTAGCTTTCCCCAATTTTGTT 59.992 43.478 15.72 0.00 0.00 2.83
3119 4790 4.920376 ACGGCACATGTTTTATCTAATGC 58.080 39.130 0.00 0.00 0.00 3.56
3244 4919 9.844257 ATATTTAGATGGAAAGAAGTCCTTCAG 57.156 33.333 9.54 0.00 41.94 3.02
3282 4958 9.058174 TGTGAATTTCGTGGAAAAGTAGATAAA 57.942 29.630 0.00 0.00 35.11 1.40
3493 5212 9.541143 TTTTCTTTTTGTGAATAATGAAGGGTC 57.459 29.630 0.00 0.00 0.00 4.46
3494 5213 9.898152 TTTTTCTTTTTGTGAATAATGAAGGGT 57.102 25.926 0.00 0.00 0.00 4.34
3501 5220 9.325198 GGGTCTGTTTTTCTTTTTGTGAATAAT 57.675 29.630 0.00 0.00 0.00 1.28
3502 5221 8.536175 AGGGTCTGTTTTTCTTTTTGTGAATAA 58.464 29.630 0.00 0.00 0.00 1.40
3503 5222 8.073467 AGGGTCTGTTTTTCTTTTTGTGAATA 57.927 30.769 0.00 0.00 0.00 1.75
3504 5223 6.946340 AGGGTCTGTTTTTCTTTTTGTGAAT 58.054 32.000 0.00 0.00 0.00 2.57
3505 5224 6.353404 AGGGTCTGTTTTTCTTTTTGTGAA 57.647 33.333 0.00 0.00 0.00 3.18
3506 5225 5.993748 AGGGTCTGTTTTTCTTTTTGTGA 57.006 34.783 0.00 0.00 0.00 3.58
3507 5226 6.162777 TGAAGGGTCTGTTTTTCTTTTTGTG 58.837 36.000 0.00 0.00 0.00 3.33
3508 5227 6.353404 TGAAGGGTCTGTTTTTCTTTTTGT 57.647 33.333 0.00 0.00 0.00 2.83
3509 5228 7.848223 AATGAAGGGTCTGTTTTTCTTTTTG 57.152 32.000 0.00 0.00 0.00 2.44
3510 5229 7.710907 GCTAATGAAGGGTCTGTTTTTCTTTTT 59.289 33.333 0.00 0.00 0.00 1.94
3511 5230 7.069950 AGCTAATGAAGGGTCTGTTTTTCTTTT 59.930 33.333 0.00 0.00 0.00 2.27
3512 5231 6.551227 AGCTAATGAAGGGTCTGTTTTTCTTT 59.449 34.615 0.00 0.00 0.00 2.52
3513 5232 6.071320 AGCTAATGAAGGGTCTGTTTTTCTT 58.929 36.000 0.00 0.00 0.00 2.52
3514 5233 5.635120 AGCTAATGAAGGGTCTGTTTTTCT 58.365 37.500 0.00 0.00 0.00 2.52
3515 5234 5.966742 AGCTAATGAAGGGTCTGTTTTTC 57.033 39.130 0.00 0.00 0.00 2.29
3518 5237 9.780186 GTTATATAGCTAATGAAGGGTCTGTTT 57.220 33.333 0.00 0.00 0.00 2.83
3519 5238 8.088981 CGTTATATAGCTAATGAAGGGTCTGTT 58.911 37.037 0.00 0.00 0.00 3.16
3520 5239 7.232941 ACGTTATATAGCTAATGAAGGGTCTGT 59.767 37.037 0.00 0.00 0.00 3.41
3521 5240 7.603651 ACGTTATATAGCTAATGAAGGGTCTG 58.396 38.462 0.00 0.00 0.00 3.51
3522 5241 7.670559 AGACGTTATATAGCTAATGAAGGGTCT 59.329 37.037 0.00 3.39 0.00 3.85
3523 5242 7.828712 AGACGTTATATAGCTAATGAAGGGTC 58.171 38.462 0.00 1.04 0.00 4.46
3524 5243 7.778185 AGACGTTATATAGCTAATGAAGGGT 57.222 36.000 0.00 0.00 0.00 4.34
3525 5244 8.524487 AGAAGACGTTATATAGCTAATGAAGGG 58.476 37.037 0.00 0.00 0.00 3.95
3575 5295 6.332630 CAATCAACATCCTTTTCCATACACC 58.667 40.000 0.00 0.00 0.00 4.16
3576 5296 5.807011 GCAATCAACATCCTTTTCCATACAC 59.193 40.000 0.00 0.00 0.00 2.90
3644 5364 3.916359 TGTACAACAACCCTTCACAGA 57.084 42.857 0.00 0.00 0.00 3.41
3649 5369 3.305335 CCAGCAATGTACAACAACCCTTC 60.305 47.826 0.00 0.00 0.00 3.46
3654 5374 4.568152 AACTCCAGCAATGTACAACAAC 57.432 40.909 0.00 0.00 0.00 3.32
3706 5427 8.407832 CACCATGCAATAGTCAAAATATTGAGA 58.592 33.333 10.38 0.00 45.88 3.27
3742 5468 2.896685 TGGGCAAGTTTGGGATACTTTG 59.103 45.455 0.00 0.00 33.73 2.77
3821 5547 0.914644 TCTTTGCTCCTGGCTATGCT 59.085 50.000 0.00 0.00 42.39 3.79
3825 5551 1.219124 CGCTCTTTGCTCCTGGCTA 59.781 57.895 0.00 0.00 42.39 3.93
3827 5553 2.521958 TACCGCTCTTTGCTCCTGGC 62.522 60.000 0.00 0.00 40.11 4.85
3864 5591 6.090898 GCTCGCCGACAAATTCATATATACTT 59.909 38.462 0.00 0.00 0.00 2.24
3908 5635 8.971073 AGTTCATTCCCCTAAGTAATGAATTTG 58.029 33.333 11.55 0.00 45.93 2.32
3961 5688 4.526970 ACTTAATTGTCAGCATCCGGATT 58.473 39.130 16.19 0.00 0.00 3.01
3964 5691 5.811399 TTAACTTAATTGTCAGCATCCGG 57.189 39.130 0.00 0.00 0.00 5.14
4094 6122 9.452287 CTGAGTCTTAACCTATAGTATACTCCC 57.548 40.741 9.12 0.00 31.92 4.30
4110 6138 9.409918 ACATATAGAGTACTTGCTGAGTCTTAA 57.590 33.333 0.00 0.00 39.86 1.85
4252 6283 5.760253 TCTTGACAATGAGGAAGAAAGTGAC 59.240 40.000 0.00 0.00 0.00 3.67
4365 6397 2.159517 GCTAGCAACCAATCACTTTCGG 60.160 50.000 10.63 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.