Multiple sequence alignment - TraesCS3D01G009300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G009300 chr3D 100.000 4717 0 0 1 4717 3100715 3095999 0.000000e+00 8711.0
1 TraesCS3D01G009300 chr3D 77.067 1548 255 63 2241 3742 3180247 3178754 0.000000e+00 800.0
2 TraesCS3D01G009300 chr3D 82.464 844 103 32 2691 3527 3151924 3151119 0.000000e+00 697.0
3 TraesCS3D01G009300 chr3D 88.864 449 31 10 465 907 3155600 3155165 6.950000e-148 534.0
4 TraesCS3D01G009300 chr3D 81.086 571 89 13 2403 2960 3084364 3083800 5.600000e-119 438.0
5 TraesCS3D01G009300 chr3D 81.716 536 69 15 3578 4108 3150858 3150347 2.030000e-113 420.0
6 TraesCS3D01G009300 chr3D 89.697 330 23 6 1067 1392 3155080 3154758 1.220000e-110 411.0
7 TraesCS3D01G009300 chr3D 80.309 518 49 28 894 1382 3181631 3181138 4.520000e-90 342.0
8 TraesCS3D01G009300 chr3D 96.026 151 6 0 22 172 283723910 283723760 3.650000e-61 246.0
9 TraesCS3D01G009300 chr3D 96.026 151 6 0 22 172 362929162 362929012 3.650000e-61 246.0
10 TraesCS3D01G009300 chr3D 92.857 112 8 0 1374 1485 527767474 527767363 3.780000e-36 163.0
11 TraesCS3D01G009300 chr3D 84.302 172 17 5 265 434 3157478 3157315 4.890000e-35 159.0
12 TraesCS3D01G009300 chr3D 91.964 112 9 0 1374 1485 142073087 142072976 1.760000e-34 158.0
13 TraesCS3D01G009300 chr3D 89.362 94 9 1 1475 1568 3154759 3154667 2.980000e-22 117.0
14 TraesCS3D01G009300 chr3B 89.389 1800 160 15 2433 4221 2129647 2127868 0.000000e+00 2237.0
15 TraesCS3D01G009300 chr3B 89.150 1788 161 16 2419 4192 2323813 2325581 0.000000e+00 2196.0
16 TraesCS3D01G009300 chr3B 89.787 705 45 8 705 1392 2130994 2130300 0.000000e+00 878.0
17 TraesCS3D01G009300 chr3B 89.886 702 44 8 705 1389 2322482 2323173 0.000000e+00 878.0
18 TraesCS3D01G009300 chr3B 76.176 1679 286 77 2222 3859 2145146 2143541 0.000000e+00 780.0
19 TraesCS3D01G009300 chr3B 83.069 567 86 7 2401 2961 2344895 2345457 1.510000e-139 507.0
20 TraesCS3D01G009300 chr3B 89.062 320 27 3 1664 1980 2130242 2129928 1.590000e-104 390.0
21 TraesCS3D01G009300 chr3B 89.062 320 27 3 1664 1980 2323234 2323548 1.590000e-104 390.0
22 TraesCS3D01G009300 chr3B 95.960 198 8 0 2007 2204 2129853 2129656 5.890000e-84 322.0
23 TraesCS3D01G009300 chr3B 95.960 198 8 0 2007 2204 2323623 2323820 5.890000e-84 322.0
24 TraesCS3D01G009300 chr3B 86.932 176 20 2 3562 3734 2108679 2108504 1.340000e-45 195.0
25 TraesCS3D01G009300 chr3B 91.964 112 9 0 1374 1485 122310336 122310225 1.760000e-34 158.0
26 TraesCS3D01G009300 chr3B 82.353 170 10 9 465 632 2322305 2322456 3.830000e-26 130.0
27 TraesCS3D01G009300 chr3B 95.745 47 2 0 993 1039 2110709 2110663 5.060000e-10 76.8
28 TraesCS3D01G009300 chr3B 100.000 34 0 0 1153 1186 2110595 2110562 3.940000e-06 63.9
29 TraesCS3D01G009300 chr3A 87.761 1291 130 19 2202 3476 206756 205478 0.000000e+00 1483.0
30 TraesCS3D01G009300 chr3A 84.286 1120 152 16 3613 4717 205036 203926 0.000000e+00 1072.0
31 TraesCS3D01G009300 chr3A 87.227 595 37 16 465 1048 208437 207871 3.980000e-180 641.0
32 TraesCS3D01G009300 chr3A 93.808 323 13 2 1076 1391 207887 207565 3.300000e-131 479.0
33 TraesCS3D01G009300 chr3A 80.093 432 84 2 2541 2971 372398 371968 2.120000e-83 320.0
34 TraesCS3D01G009300 chr3A 80.000 275 44 9 3562 3833 130119 129853 4.820000e-45 193.0
35 TraesCS3D01G009300 chr3A 81.928 249 19 12 212 434 209432 209184 2.240000e-43 187.0
36 TraesCS3D01G009300 chr3A 91.964 112 9 0 1374 1485 170890006 170889895 1.760000e-34 158.0
37 TraesCS3D01G009300 chr3A 81.507 146 23 2 1247 1392 127522 127381 2.980000e-22 117.0
38 TraesCS3D01G009300 chr4B 78.301 765 141 16 2518 3277 653429755 653429011 1.990000e-128 470.0
39 TraesCS3D01G009300 chr5A 77.385 849 152 30 2475 3307 690564031 690564855 7.150000e-128 468.0
40 TraesCS3D01G009300 chr1D 100.000 151 0 0 22 172 180946629 180946479 3.590000e-71 279.0
41 TraesCS3D01G009300 chr5D 96.689 151 5 0 22 172 208255834 208255684 7.840000e-63 252.0
42 TraesCS3D01G009300 chr5D 95.364 151 7 0 22 172 558188683 558188533 1.700000e-59 241.0
43 TraesCS3D01G009300 chr4D 96.689 151 5 0 22 172 502241815 502241665 7.840000e-63 252.0
44 TraesCS3D01G009300 chr4D 95.364 151 7 0 22 172 450475357 450475507 1.700000e-59 241.0
45 TraesCS3D01G009300 chr6A 95.364 151 7 0 22 172 410702272 410702422 1.700000e-59 241.0
46 TraesCS3D01G009300 chr2D 95.364 151 7 0 22 172 310147518 310147668 1.700000e-59 241.0
47 TraesCS3D01G009300 chr2D 91.964 112 8 1 1374 1485 212144438 212144328 6.320000e-34 156.0
48 TraesCS3D01G009300 chr1A 91.964 112 9 0 1374 1485 78795367 78795256 1.760000e-34 158.0
49 TraesCS3D01G009300 chr6D 93.204 103 7 0 1374 1476 140998100 140998202 8.180000e-33 152.0
50 TraesCS3D01G009300 chr6D 93.204 103 7 0 1374 1476 265690336 265690438 8.180000e-33 152.0
51 TraesCS3D01G009300 chr6D 93.204 103 7 0 1374 1476 377764574 377764676 8.180000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G009300 chr3D 3095999 3100715 4716 True 8711.000000 8711 100.0000 1 4717 1 chr3D.!!$R2 4716
1 TraesCS3D01G009300 chr3D 3178754 3181631 2877 True 571.000000 800 78.6880 894 3742 2 chr3D.!!$R8 2848
2 TraesCS3D01G009300 chr3D 3083800 3084364 564 True 438.000000 438 81.0860 2403 2960 1 chr3D.!!$R1 557
3 TraesCS3D01G009300 chr3D 3150347 3157478 7131 True 389.666667 697 86.0675 265 4108 6 chr3D.!!$R7 3843
4 TraesCS3D01G009300 chr3B 2127868 2130994 3126 True 956.750000 2237 91.0495 705 4221 4 chr3B.!!$R4 3516
5 TraesCS3D01G009300 chr3B 2322305 2325581 3276 False 783.200000 2196 89.2822 465 4192 5 chr3B.!!$F2 3727
6 TraesCS3D01G009300 chr3B 2143541 2145146 1605 True 780.000000 780 76.1760 2222 3859 1 chr3B.!!$R1 1637
7 TraesCS3D01G009300 chr3B 2344895 2345457 562 False 507.000000 507 83.0690 2401 2961 1 chr3B.!!$F1 560
8 TraesCS3D01G009300 chr3A 203926 209432 5506 True 772.400000 1483 87.0020 212 4717 5 chr3A.!!$R4 4505
9 TraesCS3D01G009300 chr4B 653429011 653429755 744 True 470.000000 470 78.3010 2518 3277 1 chr4B.!!$R1 759
10 TraesCS3D01G009300 chr5A 690564031 690564855 824 False 468.000000 468 77.3850 2475 3307 1 chr5A.!!$F1 832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.033504 AAGGACTACGTGCACCAGTG 59.966 55.0 20.26 5.77 0.00 3.66 F
67 68 0.035458 GTGCACCAGTGGTAGCTCTT 59.965 55.0 26.51 0.03 32.11 2.85 F
326 355 0.179166 CACGGGCATGCAACACATAC 60.179 55.0 21.36 0.00 36.64 2.39 F
938 2993 0.179468 GCTGGCCCTTATCCGTACAA 59.821 55.0 0.00 0.00 0.00 2.41 F
1405 3507 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.0 0.00 0.00 36.12 3.53 F
2716 6912 0.183971 CCCACTACCACCACAACCAA 59.816 55.0 0.00 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 5492 0.179127 CTCGATCGAGGAAAGCAGCA 60.179 55.000 32.81 0.85 38.51 4.41 R
1960 5917 2.634815 ATGCGAATTCAGAGCTGGAT 57.365 45.000 6.22 0.00 0.00 3.41 R
2232 6404 1.014352 ACTAATGGTTTCGATGGCGC 58.986 50.000 0.00 0.00 37.46 6.53 R
2673 6869 0.470341 GAGATGCCACTAACTCCCCC 59.530 60.000 0.00 0.00 0.00 5.40 R
3182 7387 1.812571 AGCCAGCGTTCGAAAATGAAT 59.187 42.857 0.00 0.00 0.00 2.57 R
4148 8941 0.116940 ATTGGTTGGGGATGCCAGTT 59.883 50.000 5.30 0.00 33.41 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.795165 TTTTTGCAGCGGTGGTACA 58.205 47.368 17.54 2.78 0.00 2.90
21 22 1.323412 TTTTTGCAGCGGTGGTACAT 58.677 45.000 17.54 0.00 44.52 2.29
22 23 0.878416 TTTTGCAGCGGTGGTACATC 59.122 50.000 17.54 0.00 44.52 3.06
23 24 0.036164 TTTGCAGCGGTGGTACATCT 59.964 50.000 17.54 0.00 44.52 2.90
24 25 0.036164 TTGCAGCGGTGGTACATCTT 59.964 50.000 17.54 0.00 44.52 2.40
25 26 0.391130 TGCAGCGGTGGTACATCTTC 60.391 55.000 17.54 0.00 44.52 2.87
26 27 0.108138 GCAGCGGTGGTACATCTTCT 60.108 55.000 17.54 0.00 44.52 2.85
27 28 1.676014 GCAGCGGTGGTACATCTTCTT 60.676 52.381 17.54 0.00 44.52 2.52
28 29 2.699954 CAGCGGTGGTACATCTTCTTT 58.300 47.619 6.74 0.00 44.52 2.52
29 30 3.074412 CAGCGGTGGTACATCTTCTTTT 58.926 45.455 6.74 0.00 44.52 2.27
30 31 3.502211 CAGCGGTGGTACATCTTCTTTTT 59.498 43.478 6.74 0.00 44.52 1.94
31 32 3.751698 AGCGGTGGTACATCTTCTTTTTC 59.248 43.478 0.00 0.00 44.52 2.29
32 33 3.751698 GCGGTGGTACATCTTCTTTTTCT 59.248 43.478 0.00 0.00 44.52 2.52
33 34 4.215613 GCGGTGGTACATCTTCTTTTTCTT 59.784 41.667 0.00 0.00 44.52 2.52
34 35 5.278315 GCGGTGGTACATCTTCTTTTTCTTT 60.278 40.000 0.00 0.00 44.52 2.52
35 36 6.734871 GCGGTGGTACATCTTCTTTTTCTTTT 60.735 38.462 0.00 0.00 44.52 2.27
36 37 7.200455 CGGTGGTACATCTTCTTTTTCTTTTT 58.800 34.615 0.00 0.00 44.52 1.94
37 38 8.347035 CGGTGGTACATCTTCTTTTTCTTTTTA 58.653 33.333 0.00 0.00 44.52 1.52
38 39 9.678941 GGTGGTACATCTTCTTTTTCTTTTTAG 57.321 33.333 0.00 0.00 44.52 1.85
48 49 9.865484 CTTCTTTTTCTTTTTAGAAGGACTACG 57.135 33.333 0.00 0.00 39.77 3.51
49 50 8.953368 TCTTTTTCTTTTTAGAAGGACTACGT 57.047 30.769 0.00 0.00 0.00 3.57
50 51 8.823818 TCTTTTTCTTTTTAGAAGGACTACGTG 58.176 33.333 0.00 0.00 0.00 4.49
51 52 6.535274 TTTCTTTTTAGAAGGACTACGTGC 57.465 37.500 0.00 0.00 0.00 5.34
52 53 5.204409 TCTTTTTAGAAGGACTACGTGCA 57.796 39.130 0.00 0.00 0.00 4.57
53 54 4.986659 TCTTTTTAGAAGGACTACGTGCAC 59.013 41.667 6.82 6.82 0.00 4.57
54 55 3.308438 TTTAGAAGGACTACGTGCACC 57.692 47.619 12.15 0.00 0.00 5.01
55 56 1.913778 TAGAAGGACTACGTGCACCA 58.086 50.000 12.15 0.00 0.00 4.17
56 57 0.603569 AGAAGGACTACGTGCACCAG 59.396 55.000 12.15 11.32 0.00 4.00
57 58 0.317479 GAAGGACTACGTGCACCAGT 59.683 55.000 16.44 16.44 0.00 4.00
58 59 0.033504 AAGGACTACGTGCACCAGTG 59.966 55.000 20.26 5.77 0.00 3.66
59 60 1.374252 GGACTACGTGCACCAGTGG 60.374 63.158 20.26 7.91 0.00 4.00
60 61 1.366366 GACTACGTGCACCAGTGGT 59.634 57.895 20.26 16.42 35.62 4.16
61 62 0.599558 GACTACGTGCACCAGTGGTA 59.400 55.000 16.22 11.37 32.11 3.25
62 63 0.601558 ACTACGTGCACCAGTGGTAG 59.398 55.000 16.22 20.57 37.26 3.18
63 64 0.736325 CTACGTGCACCAGTGGTAGC 60.736 60.000 16.22 20.20 32.11 3.58
64 65 1.183030 TACGTGCACCAGTGGTAGCT 61.183 55.000 26.51 15.45 32.11 3.32
65 66 1.738099 CGTGCACCAGTGGTAGCTC 60.738 63.158 26.51 23.15 32.11 4.09
66 67 1.674057 GTGCACCAGTGGTAGCTCT 59.326 57.895 26.51 0.70 32.11 4.09
67 68 0.035458 GTGCACCAGTGGTAGCTCTT 59.965 55.000 26.51 0.03 32.11 2.85
68 69 0.764890 TGCACCAGTGGTAGCTCTTT 59.235 50.000 26.51 0.00 32.11 2.52
69 70 1.160137 GCACCAGTGGTAGCTCTTTG 58.840 55.000 16.22 0.60 32.11 2.77
70 71 1.270839 GCACCAGTGGTAGCTCTTTGA 60.271 52.381 16.22 0.00 32.11 2.69
71 72 2.693069 CACCAGTGGTAGCTCTTTGAG 58.307 52.381 16.22 0.00 32.11 3.02
72 73 2.300152 CACCAGTGGTAGCTCTTTGAGA 59.700 50.000 16.22 0.00 32.11 3.27
73 74 2.564947 ACCAGTGGTAGCTCTTTGAGAG 59.435 50.000 14.87 0.61 38.72 3.20
74 75 2.564947 CCAGTGGTAGCTCTTTGAGAGT 59.435 50.000 0.00 0.00 44.12 3.24
75 76 3.367910 CCAGTGGTAGCTCTTTGAGAGTC 60.368 52.174 0.00 0.32 44.12 3.36
76 77 3.509575 CAGTGGTAGCTCTTTGAGAGTCT 59.490 47.826 6.80 0.00 44.12 3.24
77 78 4.021544 CAGTGGTAGCTCTTTGAGAGTCTT 60.022 45.833 6.80 0.00 44.12 3.01
78 79 4.021544 AGTGGTAGCTCTTTGAGAGTCTTG 60.022 45.833 6.80 0.00 44.12 3.02
79 80 3.898123 TGGTAGCTCTTTGAGAGTCTTGT 59.102 43.478 6.80 0.00 44.12 3.16
80 81 4.345257 TGGTAGCTCTTTGAGAGTCTTGTT 59.655 41.667 6.80 0.00 44.12 2.83
81 82 4.926832 GGTAGCTCTTTGAGAGTCTTGTTC 59.073 45.833 6.80 0.00 44.12 3.18
82 83 4.679373 AGCTCTTTGAGAGTCTTGTTCA 57.321 40.909 6.80 0.00 44.12 3.18
83 84 5.028549 AGCTCTTTGAGAGTCTTGTTCAA 57.971 39.130 6.80 0.00 44.12 2.69
84 85 5.619220 AGCTCTTTGAGAGTCTTGTTCAAT 58.381 37.500 6.80 0.00 44.12 2.57
85 86 6.060788 AGCTCTTTGAGAGTCTTGTTCAATT 58.939 36.000 6.80 0.00 44.12 2.32
86 87 6.204495 AGCTCTTTGAGAGTCTTGTTCAATTC 59.796 38.462 6.80 0.00 44.12 2.17
87 88 6.204495 GCTCTTTGAGAGTCTTGTTCAATTCT 59.796 38.462 6.80 0.00 44.12 2.40
88 89 7.255070 GCTCTTTGAGAGTCTTGTTCAATTCTT 60.255 37.037 6.80 0.00 44.12 2.52
89 90 8.511604 TCTTTGAGAGTCTTGTTCAATTCTTT 57.488 30.769 0.00 0.00 31.54 2.52
90 91 8.960591 TCTTTGAGAGTCTTGTTCAATTCTTTT 58.039 29.630 0.00 0.00 31.54 2.27
91 92 9.578439 CTTTGAGAGTCTTGTTCAATTCTTTTT 57.422 29.630 0.00 0.00 31.54 1.94
92 93 8.915871 TTGAGAGTCTTGTTCAATTCTTTTTG 57.084 30.769 0.00 0.00 0.00 2.44
93 94 7.483307 TGAGAGTCTTGTTCAATTCTTTTTGG 58.517 34.615 0.00 0.00 0.00 3.28
94 95 6.809869 AGAGTCTTGTTCAATTCTTTTTGGG 58.190 36.000 0.00 0.00 0.00 4.12
95 96 6.381133 AGAGTCTTGTTCAATTCTTTTTGGGT 59.619 34.615 0.00 0.00 0.00 4.51
96 97 6.340522 AGTCTTGTTCAATTCTTTTTGGGTG 58.659 36.000 0.00 0.00 0.00 4.61
97 98 6.070824 AGTCTTGTTCAATTCTTTTTGGGTGT 60.071 34.615 0.00 0.00 0.00 4.16
98 99 6.255670 GTCTTGTTCAATTCTTTTTGGGTGTC 59.744 38.462 0.00 0.00 0.00 3.67
99 100 5.017294 TGTTCAATTCTTTTTGGGTGTCC 57.983 39.130 0.00 0.00 0.00 4.02
100 101 4.141824 TGTTCAATTCTTTTTGGGTGTCCC 60.142 41.667 0.00 0.00 45.71 4.46
101 102 3.922375 TCAATTCTTTTTGGGTGTCCCT 58.078 40.909 6.38 0.00 45.70 4.20
102 103 3.895041 TCAATTCTTTTTGGGTGTCCCTC 59.105 43.478 6.38 0.00 45.70 4.30
103 104 3.611025 ATTCTTTTTGGGTGTCCCTCA 57.389 42.857 6.38 0.00 45.70 3.86
104 105 2.656947 TCTTTTTGGGTGTCCCTCAG 57.343 50.000 6.38 0.00 45.70 3.35
105 106 1.144913 TCTTTTTGGGTGTCCCTCAGG 59.855 52.381 6.38 0.00 45.70 3.86
106 107 1.144913 CTTTTTGGGTGTCCCTCAGGA 59.855 52.381 0.00 0.00 45.70 3.86
107 108 1.455822 TTTTGGGTGTCCCTCAGGAT 58.544 50.000 0.00 0.00 46.41 3.24
108 109 2.352561 TTTGGGTGTCCCTCAGGATA 57.647 50.000 0.00 0.00 46.41 2.59
109 110 2.352561 TTGGGTGTCCCTCAGGATAA 57.647 50.000 0.00 0.00 46.41 1.75
110 111 2.352561 TGGGTGTCCCTCAGGATAAA 57.647 50.000 0.00 0.00 46.41 1.40
111 112 2.196595 TGGGTGTCCCTCAGGATAAAG 58.803 52.381 0.00 0.00 46.41 1.85
112 113 2.197465 GGGTGTCCCTCAGGATAAAGT 58.803 52.381 0.00 0.00 46.41 2.66
113 114 2.092914 GGGTGTCCCTCAGGATAAAGTG 60.093 54.545 0.00 0.00 46.41 3.16
114 115 2.092914 GGTGTCCCTCAGGATAAAGTGG 60.093 54.545 0.00 0.00 46.41 4.00
115 116 2.572104 GTGTCCCTCAGGATAAAGTGGT 59.428 50.000 0.00 0.00 46.41 4.16
116 117 3.009143 GTGTCCCTCAGGATAAAGTGGTT 59.991 47.826 0.00 0.00 46.41 3.67
117 118 3.263425 TGTCCCTCAGGATAAAGTGGTTC 59.737 47.826 0.00 0.00 46.41 3.62
118 119 2.844348 TCCCTCAGGATAAAGTGGTTCC 59.156 50.000 0.00 0.00 37.19 3.62
119 120 2.092375 CCCTCAGGATAAAGTGGTTCCC 60.092 54.545 0.00 0.00 33.47 3.97
120 121 2.420129 CCTCAGGATAAAGTGGTTCCCG 60.420 54.545 0.00 0.00 0.00 5.14
121 122 2.500098 CTCAGGATAAAGTGGTTCCCGA 59.500 50.000 0.00 0.00 0.00 5.14
122 123 2.500098 TCAGGATAAAGTGGTTCCCGAG 59.500 50.000 0.00 0.00 0.00 4.63
123 124 2.236395 CAGGATAAAGTGGTTCCCGAGT 59.764 50.000 0.00 0.00 0.00 4.18
124 125 2.500504 AGGATAAAGTGGTTCCCGAGTC 59.499 50.000 0.00 0.00 0.00 3.36
125 126 2.235402 GGATAAAGTGGTTCCCGAGTCA 59.765 50.000 0.00 0.00 0.00 3.41
126 127 3.118371 GGATAAAGTGGTTCCCGAGTCAT 60.118 47.826 0.00 0.00 0.00 3.06
127 128 2.474410 AAAGTGGTTCCCGAGTCATC 57.526 50.000 0.00 0.00 0.00 2.92
128 129 0.613777 AAGTGGTTCCCGAGTCATCC 59.386 55.000 0.00 0.00 0.00 3.51
129 130 0.252284 AGTGGTTCCCGAGTCATCCT 60.252 55.000 0.00 0.00 0.00 3.24
130 131 1.006758 AGTGGTTCCCGAGTCATCCTA 59.993 52.381 0.00 0.00 0.00 2.94
131 132 1.136500 GTGGTTCCCGAGTCATCCTAC 59.864 57.143 0.00 0.00 0.00 3.18
132 133 0.751452 GGTTCCCGAGTCATCCTACC 59.249 60.000 0.00 0.00 0.00 3.18
133 134 1.688627 GGTTCCCGAGTCATCCTACCT 60.689 57.143 0.00 0.00 0.00 3.08
134 135 1.682323 GTTCCCGAGTCATCCTACCTC 59.318 57.143 0.00 0.00 0.00 3.85
135 136 0.185416 TCCCGAGTCATCCTACCTCC 59.815 60.000 0.00 0.00 0.00 4.30
136 137 0.186386 CCCGAGTCATCCTACCTCCT 59.814 60.000 0.00 0.00 0.00 3.69
137 138 1.611519 CCGAGTCATCCTACCTCCTC 58.388 60.000 0.00 0.00 0.00 3.71
138 139 1.144093 CCGAGTCATCCTACCTCCTCT 59.856 57.143 0.00 0.00 0.00 3.69
139 140 2.372504 CCGAGTCATCCTACCTCCTCTA 59.627 54.545 0.00 0.00 0.00 2.43
140 141 3.558321 CCGAGTCATCCTACCTCCTCTAG 60.558 56.522 0.00 0.00 0.00 2.43
141 142 3.071892 CGAGTCATCCTACCTCCTCTAGT 59.928 52.174 0.00 0.00 0.00 2.57
142 143 4.648651 GAGTCATCCTACCTCCTCTAGTC 58.351 52.174 0.00 0.00 0.00 2.59
143 144 4.048600 AGTCATCCTACCTCCTCTAGTCA 58.951 47.826 0.00 0.00 0.00 3.41
144 145 4.667858 AGTCATCCTACCTCCTCTAGTCAT 59.332 45.833 0.00 0.00 0.00 3.06
145 146 5.135362 AGTCATCCTACCTCCTCTAGTCATT 59.865 44.000 0.00 0.00 0.00 2.57
146 147 6.333168 AGTCATCCTACCTCCTCTAGTCATTA 59.667 42.308 0.00 0.00 0.00 1.90
147 148 6.431852 GTCATCCTACCTCCTCTAGTCATTAC 59.568 46.154 0.00 0.00 0.00 1.89
148 149 6.333168 TCATCCTACCTCCTCTAGTCATTACT 59.667 42.308 0.00 0.00 39.91 2.24
149 150 6.593759 TCCTACCTCCTCTAGTCATTACTT 57.406 41.667 0.00 0.00 37.15 2.24
150 151 6.982899 TCCTACCTCCTCTAGTCATTACTTT 58.017 40.000 0.00 0.00 37.15 2.66
151 152 8.110743 TCCTACCTCCTCTAGTCATTACTTTA 57.889 38.462 0.00 0.00 37.15 1.85
152 153 8.563502 TCCTACCTCCTCTAGTCATTACTTTAA 58.436 37.037 0.00 0.00 37.15 1.52
153 154 8.631797 CCTACCTCCTCTAGTCATTACTTTAAC 58.368 40.741 0.00 0.00 37.15 2.01
154 155 9.186837 CTACCTCCTCTAGTCATTACTTTAACA 57.813 37.037 0.00 0.00 37.15 2.41
155 156 8.068892 ACCTCCTCTAGTCATTACTTTAACAG 57.931 38.462 0.00 0.00 37.15 3.16
156 157 6.981559 CCTCCTCTAGTCATTACTTTAACAGC 59.018 42.308 0.00 0.00 37.15 4.40
157 158 7.363880 CCTCCTCTAGTCATTACTTTAACAGCA 60.364 40.741 0.00 0.00 37.15 4.41
158 159 8.079211 TCCTCTAGTCATTACTTTAACAGCAT 57.921 34.615 0.00 0.00 37.15 3.79
159 160 7.981789 TCCTCTAGTCATTACTTTAACAGCATG 59.018 37.037 0.00 0.00 38.68 4.06
160 161 7.981789 CCTCTAGTCATTACTTTAACAGCATGA 59.018 37.037 0.00 0.00 36.97 3.07
161 162 9.539825 CTCTAGTCATTACTTTAACAGCATGAT 57.460 33.333 0.00 0.00 36.97 2.45
162 163 9.534565 TCTAGTCATTACTTTAACAGCATGATC 57.465 33.333 0.00 0.00 36.97 2.92
163 164 9.317936 CTAGTCATTACTTTAACAGCATGATCA 57.682 33.333 0.00 0.00 36.97 2.92
164 165 8.743085 AGTCATTACTTTAACAGCATGATCAT 57.257 30.769 1.18 1.18 32.85 2.45
165 166 9.182214 AGTCATTACTTTAACAGCATGATCATT 57.818 29.630 5.16 0.00 32.85 2.57
166 167 9.229784 GTCATTACTTTAACAGCATGATCATTG 57.770 33.333 5.16 5.62 39.69 2.82
167 168 9.176460 TCATTACTTTAACAGCATGATCATTGA 57.824 29.630 13.20 4.08 39.69 2.57
168 169 9.961265 CATTACTTTAACAGCATGATCATTGAT 57.039 29.630 13.20 0.00 39.69 2.57
176 177 8.637196 AACAGCATGATCATTGATATTCATCT 57.363 30.769 13.20 0.00 39.69 2.90
177 178 9.734984 AACAGCATGATCATTGATATTCATCTA 57.265 29.630 13.20 0.00 39.69 1.98
178 179 9.163899 ACAGCATGATCATTGATATTCATCTAC 57.836 33.333 13.20 0.00 39.69 2.59
179 180 9.384764 CAGCATGATCATTGATATTCATCTACT 57.615 33.333 5.16 0.00 39.69 2.57
180 181 9.602568 AGCATGATCATTGATATTCATCTACTC 57.397 33.333 5.16 0.00 31.93 2.59
181 182 8.541312 GCATGATCATTGATATTCATCTACTCG 58.459 37.037 5.16 0.00 31.93 4.18
182 183 9.798994 CATGATCATTGATATTCATCTACTCGA 57.201 33.333 5.16 0.00 31.93 4.04
198 199 7.493743 TCTACTCGATGACAGTTTATCTACC 57.506 40.000 0.00 0.00 0.00 3.18
199 200 5.517322 ACTCGATGACAGTTTATCTACCC 57.483 43.478 0.00 0.00 0.00 3.69
200 201 5.202004 ACTCGATGACAGTTTATCTACCCT 58.798 41.667 0.00 0.00 0.00 4.34
201 202 5.657302 ACTCGATGACAGTTTATCTACCCTT 59.343 40.000 0.00 0.00 0.00 3.95
202 203 6.145338 TCGATGACAGTTTATCTACCCTTC 57.855 41.667 0.00 0.00 0.00 3.46
203 204 5.068723 TCGATGACAGTTTATCTACCCTTCC 59.931 44.000 0.00 0.00 0.00 3.46
204 205 5.163447 CGATGACAGTTTATCTACCCTTCCA 60.163 44.000 0.00 0.00 0.00 3.53
205 206 6.463049 CGATGACAGTTTATCTACCCTTCCAT 60.463 42.308 0.00 0.00 0.00 3.41
206 207 7.255836 CGATGACAGTTTATCTACCCTTCCATA 60.256 40.741 0.00 0.00 0.00 2.74
207 208 7.931015 TGACAGTTTATCTACCCTTCCATAT 57.069 36.000 0.00 0.00 0.00 1.78
208 209 7.735917 TGACAGTTTATCTACCCTTCCATATG 58.264 38.462 0.00 0.00 0.00 1.78
209 210 6.534634 ACAGTTTATCTACCCTTCCATATGC 58.465 40.000 0.00 0.00 0.00 3.14
210 211 5.940470 CAGTTTATCTACCCTTCCATATGCC 59.060 44.000 0.00 0.00 0.00 4.40
214 215 2.567169 TCTACCCTTCCATATGCCGATG 59.433 50.000 0.00 0.00 0.00 3.84
275 277 5.928976 ACAATTCATATCCGAACCTCATGA 58.071 37.500 0.00 0.00 0.00 3.07
289 291 4.216708 ACCTCATGACTAGCTAGGTTACC 58.783 47.826 24.35 8.65 37.25 2.85
295 297 7.067421 TCATGACTAGCTAGGTTACCTACAAT 58.933 38.462 24.35 0.00 34.61 2.71
321 323 2.672651 CTCCACGGGCATGCAACA 60.673 61.111 21.36 0.00 0.00 3.33
323 325 3.293714 CCACGGGCATGCAACACA 61.294 61.111 21.36 0.00 0.00 3.72
326 355 0.179166 CACGGGCATGCAACACATAC 60.179 55.000 21.36 0.00 36.64 2.39
332 361 3.432186 GGGCATGCAACACATACTCTCTA 60.432 47.826 21.36 0.00 36.64 2.43
335 364 3.526931 TGCAACACATACTCTCTAGGC 57.473 47.619 0.00 0.00 0.00 3.93
345 374 3.579335 ACTCTCTAGGCGTGTTTTCTC 57.421 47.619 0.00 0.00 0.00 2.87
387 417 1.339438 ACCACATCCAGTCAGCATCAC 60.339 52.381 0.00 0.00 0.00 3.06
396 426 5.255687 TCCAGTCAGCATCACATTATTGTT 58.744 37.500 0.00 0.00 32.34 2.83
440 2339 3.340727 GCTTGGCTAGCTGCAATTG 57.659 52.632 15.72 0.00 46.77 2.32
468 2477 8.685838 TTTCTACAAGTAAGTTTATTGTGGCT 57.314 30.769 13.01 0.00 37.69 4.75
490 2499 2.156098 GGTACAAACGGCAGAAATCCA 58.844 47.619 0.00 0.00 0.00 3.41
516 2527 2.032426 CACTTGCGCTCAATCATGCATA 59.968 45.455 9.73 0.00 37.17 3.14
517 2532 2.032550 ACTTGCGCTCAATCATGCATAC 59.967 45.455 9.73 0.00 37.17 2.39
520 2535 1.501169 CGCTCAATCATGCATACCGA 58.499 50.000 0.00 0.00 0.00 4.69
525 2540 1.129251 CAATCATGCATACCGATCGCC 59.871 52.381 10.32 0.00 0.00 5.54
529 2544 0.674581 ATGCATACCGATCGCCCATG 60.675 55.000 10.32 12.73 0.00 3.66
531 2546 2.034879 CATACCGATCGCCCATGGC 61.035 63.158 10.32 0.58 46.75 4.40
541 2556 4.838152 CCCATGGCCGAGTGTCCG 62.838 72.222 6.09 0.00 0.00 4.79
578 2610 1.676006 GCTTAACCAATGGATCCACGG 59.324 52.381 24.50 24.50 0.00 4.94
742 2774 3.390135 TCCGTTGATATTTCTCCATCGC 58.610 45.455 0.00 0.00 0.00 4.58
892 2947 6.543100 ACATGTAGTAGTAAGAGCAGGAGTAC 59.457 42.308 0.00 0.00 0.00 2.73
938 2993 0.179468 GCTGGCCCTTATCCGTACAA 59.821 55.000 0.00 0.00 0.00 2.41
1044 3129 4.098807 GCCTCGGTATCTTCTTCTTCTTCT 59.901 45.833 0.00 0.00 0.00 2.85
1045 3130 5.394773 GCCTCGGTATCTTCTTCTTCTTCTT 60.395 44.000 0.00 0.00 0.00 2.52
1046 3131 6.270064 CCTCGGTATCTTCTTCTTCTTCTTC 58.730 44.000 0.00 0.00 0.00 2.87
1105 3190 9.132521 CTTCTTCACTTTTATTGCATTTCGATT 57.867 29.630 0.00 0.00 0.00 3.34
1251 3341 3.274288 GCAAAGGTACTGATGGAGAAGG 58.726 50.000 0.00 0.00 40.86 3.46
1254 3344 3.767309 AGGTACTGATGGAGAAGGAGT 57.233 47.619 0.00 0.00 37.18 3.85
1255 3345 3.637769 AGGTACTGATGGAGAAGGAGTC 58.362 50.000 0.00 0.00 37.18 3.36
1256 3346 3.011821 AGGTACTGATGGAGAAGGAGTCA 59.988 47.826 0.00 0.00 37.18 3.41
1262 3355 4.420206 TGATGGAGAAGGAGTCAGAGAAA 58.580 43.478 0.00 0.00 0.00 2.52
1354 3455 3.498397 CACGCTGTAAGAACCAAGAACAT 59.502 43.478 0.00 0.00 34.07 2.71
1400 3502 5.505173 TTTCTTATTACGTACTCCCTCCG 57.495 43.478 0.00 0.00 0.00 4.63
1401 3503 4.156455 TCTTATTACGTACTCCCTCCGT 57.844 45.455 0.00 0.00 38.53 4.69
1402 3504 4.526970 TCTTATTACGTACTCCCTCCGTT 58.473 43.478 0.00 0.00 36.12 4.44
1403 3505 4.576463 TCTTATTACGTACTCCCTCCGTTC 59.424 45.833 0.00 0.00 36.12 3.95
1404 3506 1.463674 TTACGTACTCCCTCCGTTCC 58.536 55.000 0.00 0.00 36.12 3.62
1405 3507 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
1406 3508 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
1407 3509 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
1408 3510 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
1409 3511 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
1410 3512 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
1411 3513 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1412 3514 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1413 3515 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1414 3516 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1415 3517 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1416 3518 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1417 3519 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
1418 3520 4.181578 CTCCGTTCCAAATTACTCGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1419 3521 3.930229 TCCGTTCCAAATTACTCGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
1420 3522 3.063452 CCGTTCCAAATTACTCGTCATGG 59.937 47.826 0.00 0.00 0.00 3.66
1421 3523 3.682858 CGTTCCAAATTACTCGTCATGGT 59.317 43.478 0.00 0.00 0.00 3.55
1422 3524 4.153475 CGTTCCAAATTACTCGTCATGGTT 59.847 41.667 0.00 0.00 0.00 3.67
1423 3525 5.334569 CGTTCCAAATTACTCGTCATGGTTT 60.335 40.000 0.00 0.00 0.00 3.27
1424 3526 6.443792 GTTCCAAATTACTCGTCATGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
1425 3527 7.571613 CGTTCCAAATTACTCGTCATGGTTTTA 60.572 37.037 0.00 0.00 0.00 1.52
1426 3528 7.372451 TCCAAATTACTCGTCATGGTTTTAG 57.628 36.000 0.00 0.00 0.00 1.85
1427 3529 6.938030 TCCAAATTACTCGTCATGGTTTTAGT 59.062 34.615 0.00 0.00 0.00 2.24
1428 3530 7.446013 TCCAAATTACTCGTCATGGTTTTAGTT 59.554 33.333 0.00 0.00 0.00 2.24
1429 3531 7.749126 CCAAATTACTCGTCATGGTTTTAGTTC 59.251 37.037 0.00 0.00 0.00 3.01
1430 3532 7.972832 AATTACTCGTCATGGTTTTAGTTCA 57.027 32.000 0.00 0.00 0.00 3.18
1431 3533 7.972832 ATTACTCGTCATGGTTTTAGTTCAA 57.027 32.000 0.00 0.00 0.00 2.69
1432 3534 7.789273 TTACTCGTCATGGTTTTAGTTCAAA 57.211 32.000 0.00 0.00 0.00 2.69
1433 3535 6.877611 ACTCGTCATGGTTTTAGTTCAAAT 57.122 33.333 0.00 0.00 0.00 2.32
1434 3536 7.272037 ACTCGTCATGGTTTTAGTTCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
1435 3537 7.712797 ACTCGTCATGGTTTTAGTTCAAATTT 58.287 30.769 0.00 0.00 0.00 1.82
1436 3538 7.647715 ACTCGTCATGGTTTTAGTTCAAATTTG 59.352 33.333 12.15 12.15 0.00 2.32
1437 3539 7.708051 TCGTCATGGTTTTAGTTCAAATTTGA 58.292 30.769 16.91 16.91 34.92 2.69
1438 3540 8.191446 TCGTCATGGTTTTAGTTCAAATTTGAA 58.809 29.630 26.01 26.01 44.31 2.69
1452 3554 8.844441 TTCAAATTTGAACTAAAACCACTACG 57.156 30.769 26.01 0.00 41.88 3.51
1453 3555 8.211116 TCAAATTTGAACTAAAACCACTACGA 57.789 30.769 18.45 0.00 33.55 3.43
1454 3556 8.339714 TCAAATTTGAACTAAAACCACTACGAG 58.660 33.333 18.45 0.00 33.55 4.18
1455 3557 7.797038 AATTTGAACTAAAACCACTACGAGT 57.203 32.000 0.00 0.00 0.00 4.18
1456 3558 8.891671 AATTTGAACTAAAACCACTACGAGTA 57.108 30.769 0.00 0.00 0.00 2.59
1457 3559 8.891671 ATTTGAACTAAAACCACTACGAGTAA 57.108 30.769 0.00 0.00 0.00 2.24
1458 3560 8.891671 TTTGAACTAAAACCACTACGAGTAAT 57.108 30.769 0.00 0.00 0.00 1.89
1459 3561 8.891671 TTGAACTAAAACCACTACGAGTAATT 57.108 30.769 0.00 0.00 0.00 1.40
1460 3562 8.891671 TGAACTAAAACCACTACGAGTAATTT 57.108 30.769 0.00 0.00 0.00 1.82
1461 3563 8.767085 TGAACTAAAACCACTACGAGTAATTTG 58.233 33.333 0.00 0.00 0.00 2.32
1462 3564 7.662604 ACTAAAACCACTACGAGTAATTTGG 57.337 36.000 0.00 0.00 0.00 3.28
1463 3565 7.444299 ACTAAAACCACTACGAGTAATTTGGA 58.556 34.615 10.45 0.00 0.00 3.53
1464 3566 7.933033 ACTAAAACCACTACGAGTAATTTGGAA 59.067 33.333 10.45 0.00 0.00 3.53
1465 3567 6.549912 AAACCACTACGAGTAATTTGGAAC 57.450 37.500 10.45 0.00 0.00 3.62
1466 3568 5.217978 ACCACTACGAGTAATTTGGAACA 57.782 39.130 10.45 0.00 0.00 3.18
1467 3569 5.235516 ACCACTACGAGTAATTTGGAACAG 58.764 41.667 10.45 0.00 42.39 3.16
1468 3570 5.011329 ACCACTACGAGTAATTTGGAACAGA 59.989 40.000 10.45 0.00 42.39 3.41
1469 3571 5.577164 CCACTACGAGTAATTTGGAACAGAG 59.423 44.000 0.00 0.00 42.39 3.35
1470 3572 5.577164 CACTACGAGTAATTTGGAACAGAGG 59.423 44.000 0.00 0.00 42.39 3.69
1471 3573 3.939066 ACGAGTAATTTGGAACAGAGGG 58.061 45.455 0.00 0.00 42.39 4.30
1472 3574 3.581332 ACGAGTAATTTGGAACAGAGGGA 59.419 43.478 0.00 0.00 42.39 4.20
1473 3575 4.184629 CGAGTAATTTGGAACAGAGGGAG 58.815 47.826 0.00 0.00 42.39 4.30
1503 3605 6.153510 ACTGAATAGTGTGATAGCTTGTGAGA 59.846 38.462 0.00 0.00 35.34 3.27
1540 3642 8.988060 TCTCCAGTTCTCCATGTTTATATTGTA 58.012 33.333 0.00 0.00 0.00 2.41
1541 3643 9.784531 CTCCAGTTCTCCATGTTTATATTGTAT 57.215 33.333 0.00 0.00 0.00 2.29
1562 3664 2.961526 TCTCATACCGTCCAGAAAGC 57.038 50.000 0.00 0.00 0.00 3.51
1575 3677 7.065443 ACCGTCCAGAAAGCAATAAGTTTATAC 59.935 37.037 0.00 0.00 0.00 1.47
1613 3715 6.849305 CGTATTTAAGTGGCGAATGGTAATTC 59.151 38.462 0.00 0.00 39.12 2.17
1651 3753 8.723311 TGGACATTTATTTTCACTTTAGGTACG 58.277 33.333 0.00 0.00 0.00 3.67
1711 3817 6.811170 AGTGAAATGTTTAAATGTAATGGCCG 59.189 34.615 0.00 0.00 0.00 6.13
1713 3819 3.512033 TGTTTAAATGTAATGGCCGCC 57.488 42.857 1.04 1.04 0.00 6.13
1752 5441 9.201127 CTCATCACATGAAATATCGTACTCAAT 57.799 33.333 0.00 0.00 39.11 2.57
1801 5490 7.542130 CAGGCATTAAGTTTTCTTGGAATGTAC 59.458 37.037 0.00 0.00 40.70 2.90
1803 5492 7.081976 GCATTAAGTTTTCTTGGAATGTACGT 58.918 34.615 0.00 0.00 40.70 3.57
1818 5757 0.530744 TACGTGCTGCTTTCCTCGAT 59.469 50.000 0.00 0.00 0.00 3.59
1827 5766 2.029380 TGCTTTCCTCGATCGAGTTCAA 60.029 45.455 35.85 24.57 40.44 2.69
1839 5778 3.218453 TCGAGTTCAATTTTCCTGCCAA 58.782 40.909 0.00 0.00 0.00 4.52
1869 5814 2.574006 TGCAGCTCCAAATTCTCAGT 57.426 45.000 0.00 0.00 0.00 3.41
1909 5858 7.227711 TCACGTTTGAAATATGAAGTCTTTCCA 59.772 33.333 0.00 0.00 32.09 3.53
1982 5939 4.871933 TCCAGCTCTGAATTCGCATATA 57.128 40.909 0.04 0.00 0.00 0.86
1984 5941 5.798132 TCCAGCTCTGAATTCGCATATAAT 58.202 37.500 0.04 0.00 0.00 1.28
1985 5942 6.935167 TCCAGCTCTGAATTCGCATATAATA 58.065 36.000 0.04 0.00 0.00 0.98
1986 5943 7.559486 TCCAGCTCTGAATTCGCATATAATAT 58.441 34.615 0.04 0.00 0.00 1.28
1987 5944 8.043113 TCCAGCTCTGAATTCGCATATAATATT 58.957 33.333 0.04 0.00 0.00 1.28
1988 5945 8.333908 CCAGCTCTGAATTCGCATATAATATTC 58.666 37.037 0.04 0.00 0.00 1.75
1989 5946 8.054819 CAGCTCTGAATTCGCATATAATATTCG 58.945 37.037 0.04 0.00 0.00 3.34
1990 5947 6.843279 GCTCTGAATTCGCATATAATATTCGC 59.157 38.462 0.04 0.00 0.00 4.70
1992 5949 8.424274 TCTGAATTCGCATATAATATTCGCAT 57.576 30.769 0.04 0.00 0.00 4.73
1993 5950 8.330302 TCTGAATTCGCATATAATATTCGCATG 58.670 33.333 0.04 0.00 0.00 4.06
2017 6031 8.640063 TGATATAGTATTGCTTCATGCCAAAT 57.360 30.769 0.00 0.00 42.00 2.32
2187 6229 3.150767 CGAATTAAGTCACACCCCCAAA 58.849 45.455 3.55 0.00 0.00 3.28
2199 6241 2.230266 CACCCCCAAAATCAACTAACGG 59.770 50.000 0.00 0.00 0.00 4.44
2249 6421 1.745232 AAGCGCCATCGAAACCATTA 58.255 45.000 2.29 0.00 38.10 1.90
2297 6469 1.160329 GGCATGTCGAGGTATGGTGC 61.160 60.000 0.00 0.00 0.00 5.01
2330 6502 5.925969 ACTGCAAAGTACAAACCAATTATGC 59.074 36.000 0.00 0.00 0.00 3.14
2373 6546 4.390264 TGGTTAACGTGTGATGATTTGGA 58.610 39.130 0.00 0.00 0.00 3.53
2465 6648 5.767168 ACTCTTCCATTGTCTTGAAAAGGAG 59.233 40.000 0.00 0.00 46.24 3.69
2492 6675 2.372264 TCTGAGCCAAGGAAATCATGC 58.628 47.619 0.00 0.00 0.00 4.06
2493 6676 2.097036 CTGAGCCAAGGAAATCATGCA 58.903 47.619 0.00 0.00 0.00 3.96
2494 6677 2.693591 CTGAGCCAAGGAAATCATGCAT 59.306 45.455 0.00 0.00 0.00 3.96
2495 6678 2.691526 TGAGCCAAGGAAATCATGCATC 59.308 45.455 0.00 0.00 0.00 3.91
2499 6682 3.619929 GCCAAGGAAATCATGCATCAAAC 59.380 43.478 0.00 0.00 0.00 2.93
2716 6912 0.183971 CCCACTACCACCACAACCAA 59.816 55.000 0.00 0.00 0.00 3.67
2741 6937 4.699522 GGTGCGGGGTCACTGGAC 62.700 72.222 0.00 0.00 45.24 4.02
2928 7124 2.295909 TCTGTTGCTGGCCACAAAATAC 59.704 45.455 18.42 10.22 0.00 1.89
3057 7257 1.809271 CGCATGAGTCCTTGGATCCAG 60.809 57.143 15.53 9.22 0.00 3.86
3062 7262 2.305927 TGAGTCCTTGGATCCAGGTTTC 59.694 50.000 21.40 19.48 0.00 2.78
3065 7265 2.092914 GTCCTTGGATCCAGGTTTCGAT 60.093 50.000 21.40 0.00 0.00 3.59
3178 7383 8.054152 AGAAATGATTTTTGTGGCAAAAGTTT 57.946 26.923 7.04 7.51 0.00 2.66
3179 7384 8.522003 AGAAATGATTTTTGTGGCAAAAGTTTT 58.478 25.926 7.04 0.00 0.00 2.43
3359 7579 2.797177 AAGAGGAAACTGCAGATCCC 57.203 50.000 28.11 21.82 44.43 3.85
3371 7591 1.773653 GCAGATCCCCAGATTCCTCTT 59.226 52.381 0.00 0.00 30.90 2.85
3377 7597 6.044171 CAGATCCCCAGATTCCTCTTTAATCT 59.956 42.308 0.00 0.00 42.95 2.40
3434 7657 2.981859 TAAAGGAGGAAAGCTAGCCG 57.018 50.000 12.13 0.00 0.00 5.52
3527 7890 3.244353 CCCTCCATACTGGCTAGAATGTG 60.244 52.174 3.17 0.00 37.47 3.21
3768 8552 9.744468 AAAATCCACACAGAACTGTATTAAAAC 57.256 29.630 7.15 0.00 42.83 2.43
3770 8554 8.635765 ATCCACACAGAACTGTATTAAAACAT 57.364 30.769 7.15 0.00 42.83 2.71
3787 8574 9.924650 ATTAAAACATCCTATAGACGGTACATC 57.075 33.333 0.00 0.00 0.00 3.06
3872 8661 7.284261 TGTCTTCTCCATGTTAATTTCACAACA 59.716 33.333 0.00 0.00 38.89 3.33
3875 8664 7.815840 TCTCCATGTTAATTTCACAACAAGA 57.184 32.000 0.00 0.00 38.11 3.02
3894 8683 9.778993 CAACAAGATCGACATATGAAGAAAATT 57.221 29.630 10.38 2.79 0.00 1.82
4064 8853 7.331687 CCGAATAGGCTTGTTTTCATTTTTGAT 59.668 33.333 0.00 0.00 0.00 2.57
4065 8854 8.711457 CGAATAGGCTTGTTTTCATTTTTGATT 58.289 29.630 0.00 0.00 0.00 2.57
4113 8906 7.668052 AGCCCAACAAAATACAACTTACATCTA 59.332 33.333 0.00 0.00 0.00 1.98
4114 8907 8.466798 GCCCAACAAAATACAACTTACATCTAT 58.533 33.333 0.00 0.00 0.00 1.98
4135 8928 9.807649 ATCTATTTTCTTTGGTGCAATACATTC 57.192 29.630 0.00 0.00 0.00 2.67
4148 8941 5.065914 GCAATACATTCATTGAGCCCTAGA 58.934 41.667 0.00 0.00 38.01 2.43
4151 8944 4.851639 ACATTCATTGAGCCCTAGAACT 57.148 40.909 0.00 0.00 0.00 3.01
4170 8963 0.413037 TGGCATCCCCAACCAATCTT 59.587 50.000 0.00 0.00 41.82 2.40
4176 8969 3.838244 TCCCCAACCAATCTTCTATCG 57.162 47.619 0.00 0.00 0.00 2.92
4187 8980 8.366671 ACCAATCTTCTATCGCTAATTTGTAC 57.633 34.615 0.00 0.00 0.00 2.90
4236 9029 1.921982 TGCACAAACACCATGCCTAT 58.078 45.000 0.00 0.00 38.63 2.57
4237 9030 1.818060 TGCACAAACACCATGCCTATC 59.182 47.619 0.00 0.00 38.63 2.08
4246 9040 2.441001 CACCATGCCTATCTCCTCCTTT 59.559 50.000 0.00 0.00 0.00 3.11
4267 9061 3.961477 TGAACATTCTTGTGTTGTCCG 57.039 42.857 0.00 0.00 42.08 4.79
4270 9064 1.946768 ACATTCTTGTGTTGTCCGGTG 59.053 47.619 0.00 0.00 33.85 4.94
4286 9081 5.116180 GTCCGGTGATCTAATCAATGTGAA 58.884 41.667 0.00 0.00 41.69 3.18
4288 9083 4.024556 CCGGTGATCTAATCAATGTGAAGC 60.025 45.833 0.00 0.00 41.69 3.86
4290 9085 5.050499 CGGTGATCTAATCAATGTGAAGCTC 60.050 44.000 0.00 0.00 41.69 4.09
4295 9090 3.340814 AATCAATGTGAAGCTCGACCT 57.659 42.857 0.00 0.00 0.00 3.85
4296 9091 2.839486 TCAATGTGAAGCTCGACCTT 57.161 45.000 0.00 0.00 0.00 3.50
4299 9094 2.301577 ATGTGAAGCTCGACCTTAGC 57.698 50.000 0.00 0.00 40.40 3.09
4302 9097 2.028112 TGTGAAGCTCGACCTTAGCAAT 60.028 45.455 0.00 0.00 42.62 3.56
4306 9101 4.518970 TGAAGCTCGACCTTAGCAATTTTT 59.481 37.500 0.00 0.00 42.62 1.94
4307 9102 4.686839 AGCTCGACCTTAGCAATTTTTC 57.313 40.909 0.00 0.00 42.62 2.29
4308 9103 4.327680 AGCTCGACCTTAGCAATTTTTCT 58.672 39.130 0.00 0.00 42.62 2.52
4309 9104 4.393371 AGCTCGACCTTAGCAATTTTTCTC 59.607 41.667 0.00 0.00 42.62 2.87
4310 9105 4.437524 GCTCGACCTTAGCAATTTTTCTCC 60.438 45.833 0.00 0.00 39.83 3.71
4311 9106 4.906618 TCGACCTTAGCAATTTTTCTCCT 58.093 39.130 0.00 0.00 0.00 3.69
4312 9107 6.045072 TCGACCTTAGCAATTTTTCTCCTA 57.955 37.500 0.00 0.00 0.00 2.94
4313 9108 6.650120 TCGACCTTAGCAATTTTTCTCCTAT 58.350 36.000 0.00 0.00 0.00 2.57
4314 9109 6.538742 TCGACCTTAGCAATTTTTCTCCTATG 59.461 38.462 0.00 0.00 0.00 2.23
4316 9111 6.731467 ACCTTAGCAATTTTTCTCCTATGGA 58.269 36.000 0.00 0.00 31.46 3.41
4320 9115 9.358872 CTTAGCAATTTTTCTCCTATGGAAAAC 57.641 33.333 0.00 0.00 40.77 2.43
4321 9116 7.301868 AGCAATTTTTCTCCTATGGAAAACA 57.698 32.000 0.00 0.00 40.77 2.83
4326 9121 3.350219 TCTCCTATGGAAAACACAGGC 57.650 47.619 0.00 0.00 43.76 4.85
4327 9122 2.009774 CTCCTATGGAAAACACAGGCG 58.990 52.381 0.00 0.00 43.76 5.52
4347 9142 1.513622 TGCCATGCATGTGTGATGC 59.486 52.632 24.58 18.93 44.76 3.91
4355 9150 2.000429 CATGTGTGATGCTCGAGTCA 58.000 50.000 15.13 12.84 0.00 3.41
4357 9152 2.749280 TGTGTGATGCTCGAGTCATT 57.251 45.000 15.13 3.43 0.00 2.57
4363 9158 2.159099 TGATGCTCGAGTCATTGGGTAC 60.159 50.000 15.13 5.82 0.00 3.34
4367 9162 1.674441 CTCGAGTCATTGGGTACGCTA 59.326 52.381 11.59 3.83 0.00 4.26
4376 9171 1.575419 TGGGTACGCTAATGGGACTT 58.425 50.000 11.59 0.00 0.00 3.01
4378 9173 1.296727 GGTACGCTAATGGGACTTGC 58.703 55.000 0.00 0.00 0.00 4.01
4408 9203 1.886542 CCCAAGGAGCTTGTAACCAAC 59.113 52.381 0.00 0.00 39.58 3.77
4410 9205 2.554032 CCAAGGAGCTTGTAACCAACAG 59.446 50.000 0.00 0.00 39.58 3.16
4425 9220 6.544928 AACCAACAGAGACAAAGGAAAAAT 57.455 33.333 0.00 0.00 0.00 1.82
4456 9251 6.750148 GGTGATAAACCTCGAGTATGAATCT 58.250 40.000 12.31 0.00 46.55 2.40
4459 9254 7.707035 GTGATAAACCTCGAGTATGAATCTTGT 59.293 37.037 12.31 0.00 0.00 3.16
4465 9260 5.518128 CCTCGAGTATGAATCTTGTGTCAAG 59.482 44.000 12.31 3.44 0.00 3.02
4466 9261 4.864806 TCGAGTATGAATCTTGTGTCAAGC 59.135 41.667 4.82 0.00 0.00 4.01
4472 9267 2.191128 ATCTTGTGTCAAGCAGGACC 57.809 50.000 5.46 0.00 36.97 4.46
4478 9273 1.270550 GTGTCAAGCAGGACCAAATGG 59.729 52.381 0.00 0.00 36.97 3.16
4494 9289 0.773644 ATGGTGAGTTCCCTGCTTGT 59.226 50.000 0.00 0.00 0.00 3.16
4504 9299 3.281727 TCCCTGCTTGTGTCAATATCC 57.718 47.619 0.00 0.00 0.00 2.59
4508 9303 2.947652 CTGCTTGTGTCAATATCCCCAG 59.052 50.000 0.00 0.00 0.00 4.45
4512 9307 4.757149 GCTTGTGTCAATATCCCCAGATAC 59.243 45.833 0.00 0.00 37.80 2.24
4538 9333 2.438975 ATGTGCCGGCCATGACAG 60.439 61.111 26.77 0.00 0.00 3.51
4560 9355 2.809010 GGCCGAGCCTGTCTCTAC 59.191 66.667 7.58 0.00 46.69 2.59
4561 9356 2.052690 GGCCGAGCCTGTCTCTACA 61.053 63.158 7.58 0.00 46.69 2.74
4578 9373 6.256757 GTCTCTACATTAGGTTGCATGTTCTC 59.743 42.308 0.00 0.00 35.24 2.87
4579 9374 5.428253 TCTACATTAGGTTGCATGTTCTCC 58.572 41.667 0.00 0.00 35.24 3.71
4582 9377 4.018960 ACATTAGGTTGCATGTTCTCCTCT 60.019 41.667 0.00 0.00 28.73 3.69
4597 9392 4.863548 TCTCCTCTCAATCCAATGCAAAT 58.136 39.130 0.00 0.00 0.00 2.32
4599 9394 6.607970 TCTCCTCTCAATCCAATGCAAATAT 58.392 36.000 0.00 0.00 0.00 1.28
4600 9395 6.713903 TCTCCTCTCAATCCAATGCAAATATC 59.286 38.462 0.00 0.00 0.00 1.63
4601 9396 6.607970 TCCTCTCAATCCAATGCAAATATCT 58.392 36.000 0.00 0.00 0.00 1.98
4602 9397 7.064866 TCCTCTCAATCCAATGCAAATATCTT 58.935 34.615 0.00 0.00 0.00 2.40
4603 9398 7.230108 TCCTCTCAATCCAATGCAAATATCTTC 59.770 37.037 0.00 0.00 0.00 2.87
4604 9399 7.281040 TCTCAATCCAATGCAAATATCTTCC 57.719 36.000 0.00 0.00 0.00 3.46
4611 9411 5.276270 CAATGCAAATATCTTCCAGGTTCG 58.724 41.667 0.00 0.00 0.00 3.95
4639 9439 5.521372 GCAATTGGCAAATATGAGGAAGAAC 59.479 40.000 3.01 0.00 43.97 3.01
4643 9443 3.312697 GGCAAATATGAGGAAGAACGACC 59.687 47.826 0.00 0.00 0.00 4.79
4670 9470 5.345741 CCGGCAAATGACTATTTCAACAAAG 59.654 40.000 0.00 0.00 37.92 2.77
4695 9495 3.037431 AGAGCTCGATGATACAATGGC 57.963 47.619 8.37 0.00 0.00 4.40
4697 9497 3.070734 AGAGCTCGATGATACAATGGCTT 59.929 43.478 8.37 0.00 0.00 4.35
4707 9507 7.360691 CGATGATACAATGGCTTTAGAAGGATG 60.361 40.741 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.268352 GATGTACCACCGCTGCAAAAA 59.732 47.619 0.00 0.00 0.00 1.94
3 4 0.878416 GATGTACCACCGCTGCAAAA 59.122 50.000 0.00 0.00 0.00 2.44
4 5 0.036164 AGATGTACCACCGCTGCAAA 59.964 50.000 0.00 0.00 0.00 3.68
5 6 0.036164 AAGATGTACCACCGCTGCAA 59.964 50.000 0.00 0.00 0.00 4.08
6 7 0.391130 GAAGATGTACCACCGCTGCA 60.391 55.000 0.00 0.00 0.00 4.41
7 8 0.108138 AGAAGATGTACCACCGCTGC 60.108 55.000 0.00 0.00 0.00 5.25
8 9 2.386661 AAGAAGATGTACCACCGCTG 57.613 50.000 0.00 0.00 0.00 5.18
9 10 3.418684 AAAAGAAGATGTACCACCGCT 57.581 42.857 0.00 0.00 0.00 5.52
10 11 3.751698 AGAAAAAGAAGATGTACCACCGC 59.248 43.478 0.00 0.00 0.00 5.68
11 12 5.941948 AAGAAAAAGAAGATGTACCACCG 57.058 39.130 0.00 0.00 0.00 4.94
12 13 9.678941 CTAAAAAGAAAAAGAAGATGTACCACC 57.321 33.333 0.00 0.00 0.00 4.61
22 23 9.865484 CGTAGTCCTTCTAAAAAGAAAAAGAAG 57.135 33.333 4.35 4.35 42.91 2.85
23 24 9.387257 ACGTAGTCCTTCTAAAAAGAAAAAGAA 57.613 29.630 0.00 0.00 29.74 2.52
24 25 8.823818 CACGTAGTCCTTCTAAAAAGAAAAAGA 58.176 33.333 0.00 0.00 41.61 2.52
25 26 7.586664 GCACGTAGTCCTTCTAAAAAGAAAAAG 59.413 37.037 0.00 0.00 41.61 2.27
26 27 7.066043 TGCACGTAGTCCTTCTAAAAAGAAAAA 59.934 33.333 0.00 0.00 41.61 1.94
27 28 6.539464 TGCACGTAGTCCTTCTAAAAAGAAAA 59.461 34.615 0.00 0.00 41.61 2.29
28 29 6.018507 GTGCACGTAGTCCTTCTAAAAAGAAA 60.019 38.462 0.00 0.00 41.61 2.52
29 30 5.464389 GTGCACGTAGTCCTTCTAAAAAGAA 59.536 40.000 0.00 0.00 41.61 2.52
30 31 4.986659 GTGCACGTAGTCCTTCTAAAAAGA 59.013 41.667 0.00 0.00 41.61 2.52
31 32 4.151867 GGTGCACGTAGTCCTTCTAAAAAG 59.848 45.833 11.45 0.00 41.61 2.27
32 33 4.060205 GGTGCACGTAGTCCTTCTAAAAA 58.940 43.478 11.45 0.00 41.61 1.94
33 34 3.069872 TGGTGCACGTAGTCCTTCTAAAA 59.930 43.478 11.45 0.00 41.61 1.52
34 35 2.629137 TGGTGCACGTAGTCCTTCTAAA 59.371 45.455 11.45 0.00 41.61 1.85
35 36 2.230508 CTGGTGCACGTAGTCCTTCTAA 59.769 50.000 11.45 0.00 41.61 2.10
36 37 1.816835 CTGGTGCACGTAGTCCTTCTA 59.183 52.381 11.45 0.00 41.61 2.10
37 38 0.603569 CTGGTGCACGTAGTCCTTCT 59.396 55.000 11.45 0.00 41.61 2.85
38 39 0.317479 ACTGGTGCACGTAGTCCTTC 59.683 55.000 16.82 0.00 41.61 3.46
39 40 0.033504 CACTGGTGCACGTAGTCCTT 59.966 55.000 18.96 0.00 41.61 3.36
40 41 1.666011 CACTGGTGCACGTAGTCCT 59.334 57.895 18.96 0.20 41.61 3.85
41 42 1.374252 CCACTGGTGCACGTAGTCC 60.374 63.158 18.96 2.32 41.61 3.85
42 43 0.599558 TACCACTGGTGCACGTAGTC 59.400 55.000 18.96 3.05 35.29 2.59
43 44 0.601558 CTACCACTGGTGCACGTAGT 59.398 55.000 16.82 16.82 37.77 2.73
44 45 0.736325 GCTACCACTGGTGCACGTAG 60.736 60.000 18.88 18.88 36.19 3.51
45 46 1.183030 AGCTACCACTGGTGCACGTA 61.183 55.000 11.45 6.08 36.19 3.57
46 47 2.030562 GCTACCACTGGTGCACGT 59.969 61.111 11.45 5.11 36.19 4.49
47 48 1.738099 GAGCTACCACTGGTGCACG 60.738 63.158 11.45 0.00 36.19 5.34
48 49 0.035458 AAGAGCTACCACTGGTGCAC 59.965 55.000 8.80 8.80 36.19 4.57
49 50 0.764890 AAAGAGCTACCACTGGTGCA 59.235 50.000 11.32 0.00 36.19 4.57
50 51 1.160137 CAAAGAGCTACCACTGGTGC 58.840 55.000 11.32 11.91 36.19 5.01
51 52 2.300152 TCTCAAAGAGCTACCACTGGTG 59.700 50.000 11.32 2.42 36.19 4.17
52 53 2.564947 CTCTCAAAGAGCTACCACTGGT 59.435 50.000 5.88 5.88 35.30 4.00
53 54 2.564947 ACTCTCAAAGAGCTACCACTGG 59.435 50.000 3.90 0.00 46.12 4.00
54 55 3.509575 AGACTCTCAAAGAGCTACCACTG 59.490 47.826 3.90 0.00 46.12 3.66
55 56 3.773560 AGACTCTCAAAGAGCTACCACT 58.226 45.455 3.90 0.00 46.12 4.00
56 57 4.241681 CAAGACTCTCAAAGAGCTACCAC 58.758 47.826 3.90 0.00 46.12 4.16
57 58 3.898123 ACAAGACTCTCAAAGAGCTACCA 59.102 43.478 3.90 0.00 46.12 3.25
58 59 4.529109 ACAAGACTCTCAAAGAGCTACC 57.471 45.455 3.90 0.00 46.12 3.18
59 60 5.533482 TGAACAAGACTCTCAAAGAGCTAC 58.467 41.667 3.90 0.00 46.12 3.58
60 61 5.791336 TGAACAAGACTCTCAAAGAGCTA 57.209 39.130 3.90 0.00 46.12 3.32
61 62 4.679373 TGAACAAGACTCTCAAAGAGCT 57.321 40.909 3.90 0.00 46.12 4.09
62 63 5.938438 ATTGAACAAGACTCTCAAAGAGC 57.062 39.130 3.90 0.00 46.12 4.09
64 65 8.511604 AAAGAATTGAACAAGACTCTCAAAGA 57.488 30.769 0.00 0.00 33.08 2.52
65 66 9.578439 AAAAAGAATTGAACAAGACTCTCAAAG 57.422 29.630 0.00 0.00 33.08 2.77
66 67 9.357652 CAAAAAGAATTGAACAAGACTCTCAAA 57.642 29.630 0.00 0.00 33.08 2.69
67 68 7.975616 CCAAAAAGAATTGAACAAGACTCTCAA 59.024 33.333 0.00 0.00 33.82 3.02
68 69 7.416664 CCCAAAAAGAATTGAACAAGACTCTCA 60.417 37.037 0.00 0.00 31.84 3.27
69 70 6.920210 CCCAAAAAGAATTGAACAAGACTCTC 59.080 38.462 0.00 0.00 31.84 3.20
70 71 6.381133 ACCCAAAAAGAATTGAACAAGACTCT 59.619 34.615 0.00 0.00 31.84 3.24
71 72 6.476706 CACCCAAAAAGAATTGAACAAGACTC 59.523 38.462 0.00 0.00 31.84 3.36
72 73 6.070824 ACACCCAAAAAGAATTGAACAAGACT 60.071 34.615 0.00 0.00 31.84 3.24
73 74 6.106003 ACACCCAAAAAGAATTGAACAAGAC 58.894 36.000 0.00 0.00 31.84 3.01
74 75 6.293004 ACACCCAAAAAGAATTGAACAAGA 57.707 33.333 0.00 0.00 31.84 3.02
75 76 5.523552 GGACACCCAAAAAGAATTGAACAAG 59.476 40.000 0.00 0.00 31.84 3.16
76 77 5.423886 GGACACCCAAAAAGAATTGAACAA 58.576 37.500 0.00 0.00 31.84 2.83
77 78 4.141824 GGGACACCCAAAAAGAATTGAACA 60.142 41.667 1.54 0.00 44.65 3.18
78 79 4.377021 GGGACACCCAAAAAGAATTGAAC 58.623 43.478 1.54 0.00 44.65 3.18
79 80 4.681074 GGGACACCCAAAAAGAATTGAA 57.319 40.909 1.54 0.00 44.65 2.69
92 93 2.092914 CACTTTATCCTGAGGGACACCC 60.093 54.545 0.00 0.00 45.43 4.61
93 94 2.092914 CCACTTTATCCTGAGGGACACC 60.093 54.545 0.00 0.00 45.43 4.16
94 95 2.572104 ACCACTTTATCCTGAGGGACAC 59.428 50.000 0.00 0.00 45.43 3.67
95 96 2.915869 ACCACTTTATCCTGAGGGACA 58.084 47.619 0.00 0.00 45.43 4.02
96 97 3.370633 GGAACCACTTTATCCTGAGGGAC 60.371 52.174 0.00 0.00 45.43 4.46
97 98 2.844348 GGAACCACTTTATCCTGAGGGA 59.156 50.000 0.00 0.00 46.81 4.20
98 99 3.283259 GGAACCACTTTATCCTGAGGG 57.717 52.381 0.00 0.00 0.00 4.30
114 115 1.682323 GAGGTAGGATGACTCGGGAAC 59.318 57.143 0.00 0.00 0.00 3.62
115 116 1.411216 GGAGGTAGGATGACTCGGGAA 60.411 57.143 0.00 0.00 32.11 3.97
116 117 0.185416 GGAGGTAGGATGACTCGGGA 59.815 60.000 0.00 0.00 32.11 5.14
117 118 0.186386 AGGAGGTAGGATGACTCGGG 59.814 60.000 0.00 0.00 32.11 5.14
118 119 1.144093 AGAGGAGGTAGGATGACTCGG 59.856 57.143 0.00 0.00 32.11 4.63
119 120 2.649531 AGAGGAGGTAGGATGACTCG 57.350 55.000 0.00 0.00 32.11 4.18
120 121 4.103469 TGACTAGAGGAGGTAGGATGACTC 59.897 50.000 0.00 0.00 0.00 3.36
121 122 4.048600 TGACTAGAGGAGGTAGGATGACT 58.951 47.826 0.00 0.00 0.00 3.41
122 123 4.440826 TGACTAGAGGAGGTAGGATGAC 57.559 50.000 0.00 0.00 0.00 3.06
123 124 5.671463 AATGACTAGAGGAGGTAGGATGA 57.329 43.478 0.00 0.00 0.00 2.92
124 125 6.548321 AGTAATGACTAGAGGAGGTAGGATG 58.452 44.000 0.00 0.00 32.65 3.51
125 126 6.790177 AGTAATGACTAGAGGAGGTAGGAT 57.210 41.667 0.00 0.00 32.65 3.24
126 127 6.593759 AAGTAATGACTAGAGGAGGTAGGA 57.406 41.667 0.00 0.00 33.58 2.94
127 128 8.631797 GTTAAAGTAATGACTAGAGGAGGTAGG 58.368 40.741 0.00 0.00 33.58 3.18
128 129 9.186837 TGTTAAAGTAATGACTAGAGGAGGTAG 57.813 37.037 0.00 0.00 33.58 3.18
129 130 9.186837 CTGTTAAAGTAATGACTAGAGGAGGTA 57.813 37.037 0.00 0.00 33.58 3.08
130 131 7.363968 GCTGTTAAAGTAATGACTAGAGGAGGT 60.364 40.741 0.00 0.00 33.58 3.85
131 132 6.981559 GCTGTTAAAGTAATGACTAGAGGAGG 59.018 42.308 0.00 0.00 33.58 4.30
132 133 7.548097 TGCTGTTAAAGTAATGACTAGAGGAG 58.452 38.462 0.00 0.00 33.58 3.69
133 134 7.476540 TGCTGTTAAAGTAATGACTAGAGGA 57.523 36.000 0.00 0.00 33.58 3.71
134 135 7.981789 TCATGCTGTTAAAGTAATGACTAGAGG 59.018 37.037 0.00 0.00 33.58 3.69
135 136 8.932945 TCATGCTGTTAAAGTAATGACTAGAG 57.067 34.615 0.00 0.00 33.58 2.43
136 137 9.534565 GATCATGCTGTTAAAGTAATGACTAGA 57.465 33.333 0.00 0.00 35.34 2.43
137 138 9.317936 TGATCATGCTGTTAAAGTAATGACTAG 57.682 33.333 0.00 0.00 35.34 2.57
138 139 9.836864 ATGATCATGCTGTTAAAGTAATGACTA 57.163 29.630 7.59 0.00 35.34 2.59
139 140 8.743085 ATGATCATGCTGTTAAAGTAATGACT 57.257 30.769 7.59 0.00 35.34 3.41
140 141 9.229784 CAATGATCATGCTGTTAAAGTAATGAC 57.770 33.333 9.46 0.00 35.34 3.06
141 142 9.176460 TCAATGATCATGCTGTTAAAGTAATGA 57.824 29.630 9.46 0.95 36.30 2.57
142 143 9.961265 ATCAATGATCATGCTGTTAAAGTAATG 57.039 29.630 9.46 0.00 0.00 1.90
150 151 9.734984 AGATGAATATCAATGATCATGCTGTTA 57.265 29.630 9.46 4.96 35.70 2.41
151 152 8.637196 AGATGAATATCAATGATCATGCTGTT 57.363 30.769 9.46 2.79 35.70 3.16
152 153 9.163899 GTAGATGAATATCAATGATCATGCTGT 57.836 33.333 9.46 0.00 35.70 4.40
153 154 9.384764 AGTAGATGAATATCAATGATCATGCTG 57.615 33.333 9.46 4.94 35.70 4.41
154 155 9.602568 GAGTAGATGAATATCAATGATCATGCT 57.397 33.333 9.46 0.00 35.70 3.79
155 156 8.541312 CGAGTAGATGAATATCAATGATCATGC 58.459 37.037 9.46 0.00 35.70 4.06
156 157 9.798994 TCGAGTAGATGAATATCAATGATCATG 57.201 33.333 9.46 3.97 35.70 3.07
173 174 7.175293 GGGTAGATAAACTGTCATCGAGTAGAT 59.825 40.741 0.00 0.00 41.01 1.98
174 175 6.485984 GGGTAGATAAACTGTCATCGAGTAGA 59.514 42.308 0.00 0.00 0.00 2.59
175 176 6.487331 AGGGTAGATAAACTGTCATCGAGTAG 59.513 42.308 0.00 0.00 0.00 2.57
176 177 6.363065 AGGGTAGATAAACTGTCATCGAGTA 58.637 40.000 0.00 0.00 0.00 2.59
177 178 5.202004 AGGGTAGATAAACTGTCATCGAGT 58.798 41.667 0.00 0.00 0.00 4.18
178 179 5.776173 AGGGTAGATAAACTGTCATCGAG 57.224 43.478 0.00 0.00 0.00 4.04
179 180 5.068723 GGAAGGGTAGATAAACTGTCATCGA 59.931 44.000 0.00 0.00 0.00 3.59
180 181 5.163447 TGGAAGGGTAGATAAACTGTCATCG 60.163 44.000 0.00 0.00 0.00 3.84
181 182 6.235231 TGGAAGGGTAGATAAACTGTCATC 57.765 41.667 0.00 0.00 0.00 2.92
182 183 6.831664 ATGGAAGGGTAGATAAACTGTCAT 57.168 37.500 0.00 0.00 0.00 3.06
183 184 7.689313 GCATATGGAAGGGTAGATAAACTGTCA 60.689 40.741 4.56 0.00 0.00 3.58
184 185 6.651225 GCATATGGAAGGGTAGATAAACTGTC 59.349 42.308 4.56 0.00 0.00 3.51
185 186 6.465894 GGCATATGGAAGGGTAGATAAACTGT 60.466 42.308 4.56 0.00 0.00 3.55
186 187 5.940470 GGCATATGGAAGGGTAGATAAACTG 59.060 44.000 4.56 0.00 0.00 3.16
187 188 5.280011 CGGCATATGGAAGGGTAGATAAACT 60.280 44.000 4.56 0.00 0.00 2.66
188 189 4.935808 CGGCATATGGAAGGGTAGATAAAC 59.064 45.833 4.56 0.00 0.00 2.01
189 190 4.841813 TCGGCATATGGAAGGGTAGATAAA 59.158 41.667 4.56 0.00 0.00 1.40
190 191 4.422057 TCGGCATATGGAAGGGTAGATAA 58.578 43.478 4.56 0.00 0.00 1.75
191 192 4.055710 TCGGCATATGGAAGGGTAGATA 57.944 45.455 4.56 0.00 0.00 1.98
192 193 2.902608 TCGGCATATGGAAGGGTAGAT 58.097 47.619 4.56 0.00 0.00 1.98
193 194 2.391926 TCGGCATATGGAAGGGTAGA 57.608 50.000 4.56 0.00 0.00 2.59
194 195 2.303022 ACATCGGCATATGGAAGGGTAG 59.697 50.000 4.56 0.00 0.00 3.18
195 196 2.334977 ACATCGGCATATGGAAGGGTA 58.665 47.619 4.56 0.00 0.00 3.69
196 197 1.140312 ACATCGGCATATGGAAGGGT 58.860 50.000 4.56 0.00 0.00 4.34
197 198 2.276732 AACATCGGCATATGGAAGGG 57.723 50.000 4.56 0.00 0.00 3.95
198 199 3.738982 TGTAACATCGGCATATGGAAGG 58.261 45.455 4.56 0.00 0.00 3.46
199 200 5.947228 ATTGTAACATCGGCATATGGAAG 57.053 39.130 4.56 0.00 0.00 3.46
200 201 6.061441 AGAATTGTAACATCGGCATATGGAA 58.939 36.000 4.56 0.00 0.00 3.53
201 202 5.620206 AGAATTGTAACATCGGCATATGGA 58.380 37.500 4.56 0.00 0.00 3.41
202 203 5.947228 AGAATTGTAACATCGGCATATGG 57.053 39.130 4.56 0.00 0.00 2.74
206 207 8.514594 CCATAATAAGAATTGTAACATCGGCAT 58.485 33.333 0.00 0.00 0.00 4.40
207 208 7.717436 TCCATAATAAGAATTGTAACATCGGCA 59.283 33.333 0.00 0.00 0.00 5.69
208 209 8.094798 TCCATAATAAGAATTGTAACATCGGC 57.905 34.615 0.00 0.00 0.00 5.54
235 236 7.531857 TGAATTGTTTACTTTCAAGGCCATA 57.468 32.000 5.01 0.00 0.00 2.74
275 277 4.344390 GCCATTGTAGGTAACCTAGCTAGT 59.656 45.833 19.31 4.58 39.22 2.57
309 311 0.378257 GAGTATGTGTTGCATGCCCG 59.622 55.000 16.68 0.00 40.45 6.13
312 314 3.806521 CCTAGAGAGTATGTGTTGCATGC 59.193 47.826 11.82 11.82 39.97 4.06
319 321 2.724454 ACACGCCTAGAGAGTATGTGT 58.276 47.619 0.00 0.00 34.52 3.72
321 323 4.463186 AGAAAACACGCCTAGAGAGTATGT 59.537 41.667 0.00 0.00 0.00 2.29
323 325 4.951094 AGAGAAAACACGCCTAGAGAGTAT 59.049 41.667 0.00 0.00 0.00 2.12
326 355 3.859411 AGAGAAAACACGCCTAGAGAG 57.141 47.619 0.00 0.00 0.00 3.20
345 374 8.015658 GTGGTTAGTGCTAAAGACAATGTTTAG 58.984 37.037 1.54 1.54 39.52 1.85
440 2339 9.341899 CCACAATAAACTTACTTGTAGAAATGC 57.658 33.333 0.00 0.00 32.14 3.56
445 2344 8.038944 CCTAGCCACAATAAACTTACTTGTAGA 58.961 37.037 0.00 0.00 32.14 2.59
450 2349 7.682628 TGTACCTAGCCACAATAAACTTACTT 58.317 34.615 0.00 0.00 0.00 2.24
455 2448 5.410439 CGTTTGTACCTAGCCACAATAAACT 59.590 40.000 7.86 0.00 34.78 2.66
468 2477 3.008157 TGGATTTCTGCCGTTTGTACCTA 59.992 43.478 0.00 0.00 0.00 3.08
490 2499 0.674895 GATTGAGCGCAAGTGGGAGT 60.675 55.000 11.47 0.00 37.45 3.85
525 2540 2.233605 TAACGGACACTCGGCCATGG 62.234 60.000 7.63 7.63 0.00 3.66
529 2544 0.593263 CGTATAACGGACACTCGGCC 60.593 60.000 0.00 0.00 38.08 6.13
531 2546 0.379669 AGCGTATAACGGACACTCGG 59.620 55.000 1.25 0.00 42.82 4.63
533 2548 1.402968 TCCAGCGTATAACGGACACTC 59.597 52.381 1.25 0.00 42.82 3.51
534 2549 1.466856 TCCAGCGTATAACGGACACT 58.533 50.000 1.25 0.00 42.82 3.55
535 2550 2.034305 AGATCCAGCGTATAACGGACAC 59.966 50.000 1.25 0.00 42.82 3.67
536 2551 2.304092 AGATCCAGCGTATAACGGACA 58.696 47.619 1.25 0.00 42.82 4.02
537 2552 3.050619 CAAGATCCAGCGTATAACGGAC 58.949 50.000 1.25 0.00 42.82 4.79
539 2554 1.792949 GCAAGATCCAGCGTATAACGG 59.207 52.381 1.25 0.00 42.82 4.44
541 2556 5.050295 GGTTAAGCAAGATCCAGCGTATAAC 60.050 44.000 16.18 16.18 35.48 1.89
742 2774 1.528129 GTTGGAGAGGGTTCAAGCAG 58.472 55.000 0.00 0.00 0.00 4.24
880 2929 2.183679 CTTGGGAAGTACTCCTGCTCT 58.816 52.381 0.00 0.00 44.68 4.09
881 2930 1.406205 GCTTGGGAAGTACTCCTGCTC 60.406 57.143 0.00 0.00 44.68 4.26
882 2931 0.615850 GCTTGGGAAGTACTCCTGCT 59.384 55.000 0.00 0.00 44.68 4.24
883 2932 0.615850 AGCTTGGGAAGTACTCCTGC 59.384 55.000 0.00 3.72 44.68 4.85
884 2933 2.167487 GAGAGCTTGGGAAGTACTCCTG 59.833 54.545 0.00 0.00 44.68 3.86
885 2934 2.225394 TGAGAGCTTGGGAAGTACTCCT 60.225 50.000 0.00 0.00 44.68 3.69
886 2935 2.180276 TGAGAGCTTGGGAAGTACTCC 58.820 52.381 0.00 0.00 44.54 3.85
892 2947 1.202746 GGCCTATGAGAGCTTGGGAAG 60.203 57.143 0.00 0.00 0.00 3.46
938 2993 0.981183 TGGCGTGGTCTAAATGGACT 59.019 50.000 0.00 0.00 36.55 3.85
1044 3129 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1045 3130 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1046 3131 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1105 3190 1.488393 TGTCTGTGTCAATGGGTGTGA 59.512 47.619 0.00 0.00 0.00 3.58
1251 3341 1.134175 CCGCCTCTCTTTCTCTGACTC 59.866 57.143 0.00 0.00 0.00 3.36
1254 3344 0.900182 TGCCGCCTCTCTTTCTCTGA 60.900 55.000 0.00 0.00 0.00 3.27
1255 3345 0.459934 CTGCCGCCTCTCTTTCTCTG 60.460 60.000 0.00 0.00 0.00 3.35
1256 3346 1.896694 CTGCCGCCTCTCTTTCTCT 59.103 57.895 0.00 0.00 0.00 3.10
1262 3355 3.397439 ATGTGCTGCCGCCTCTCT 61.397 61.111 0.00 0.00 34.43 3.10
1383 3485 3.214328 GGAACGGAGGGAGTACGTAATA 58.786 50.000 0.00 0.00 40.31 0.98
1392 3494 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
1393 3495 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1394 3496 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1396 3498 3.581755 TGACGAGTAATTTGGAACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1397 3499 3.663995 TGACGAGTAATTTGGAACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1398 3500 3.063452 CCATGACGAGTAATTTGGAACGG 59.937 47.826 0.00 0.00 0.00 4.44
1399 3501 3.682858 ACCATGACGAGTAATTTGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
1400 3502 5.622770 AACCATGACGAGTAATTTGGAAC 57.377 39.130 0.00 0.00 0.00 3.62
1401 3503 6.642707 AAAACCATGACGAGTAATTTGGAA 57.357 33.333 0.00 0.00 0.00 3.53
1402 3504 6.938030 ACTAAAACCATGACGAGTAATTTGGA 59.062 34.615 0.00 0.00 0.00 3.53
1403 3505 7.141100 ACTAAAACCATGACGAGTAATTTGG 57.859 36.000 0.00 0.00 0.00 3.28
1404 3506 8.286800 TGAACTAAAACCATGACGAGTAATTTG 58.713 33.333 0.00 0.00 0.00 2.32
1405 3507 8.385898 TGAACTAAAACCATGACGAGTAATTT 57.614 30.769 0.00 0.00 0.00 1.82
1406 3508 7.972832 TGAACTAAAACCATGACGAGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
1407 3509 7.972832 TTGAACTAAAACCATGACGAGTAAT 57.027 32.000 0.00 0.00 0.00 1.89
1408 3510 7.789273 TTTGAACTAAAACCATGACGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
1409 3511 7.972832 ATTTGAACTAAAACCATGACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
1410 3512 6.877611 ATTTGAACTAAAACCATGACGAGT 57.122 33.333 0.00 0.00 0.00 4.18
1411 3513 7.860373 TCAAATTTGAACTAAAACCATGACGAG 59.140 33.333 18.45 0.00 33.55 4.18
1412 3514 7.708051 TCAAATTTGAACTAAAACCATGACGA 58.292 30.769 18.45 0.00 33.55 4.20
1413 3515 7.922505 TCAAATTTGAACTAAAACCATGACG 57.077 32.000 18.45 0.00 33.55 4.35
1427 3529 8.675504 TCGTAGTGGTTTTAGTTCAAATTTGAA 58.324 29.630 26.01 26.01 44.31 2.69
1428 3530 8.211116 TCGTAGTGGTTTTAGTTCAAATTTGA 57.789 30.769 16.91 16.91 34.92 2.69
1429 3531 8.126700 ACTCGTAGTGGTTTTAGTTCAAATTTG 58.873 33.333 12.15 12.15 0.00 2.32
1430 3532 8.217131 ACTCGTAGTGGTTTTAGTTCAAATTT 57.783 30.769 0.00 0.00 0.00 1.82
1431 3533 7.797038 ACTCGTAGTGGTTTTAGTTCAAATT 57.203 32.000 0.00 0.00 0.00 1.82
1432 3534 8.891671 TTACTCGTAGTGGTTTTAGTTCAAAT 57.108 30.769 0.00 0.00 0.00 2.32
1433 3535 8.891671 ATTACTCGTAGTGGTTTTAGTTCAAA 57.108 30.769 0.00 0.00 0.00 2.69
1434 3536 8.891671 AATTACTCGTAGTGGTTTTAGTTCAA 57.108 30.769 0.00 0.00 0.00 2.69
1435 3537 8.767085 CAAATTACTCGTAGTGGTTTTAGTTCA 58.233 33.333 0.00 0.00 0.00 3.18
1436 3538 8.225777 CCAAATTACTCGTAGTGGTTTTAGTTC 58.774 37.037 0.00 0.00 0.00 3.01
1437 3539 7.933033 TCCAAATTACTCGTAGTGGTTTTAGTT 59.067 33.333 0.00 0.00 0.00 2.24
1438 3540 7.444299 TCCAAATTACTCGTAGTGGTTTTAGT 58.556 34.615 0.00 0.00 0.00 2.24
1439 3541 7.894376 TCCAAATTACTCGTAGTGGTTTTAG 57.106 36.000 0.00 0.00 0.00 1.85
1440 3542 7.714377 TGTTCCAAATTACTCGTAGTGGTTTTA 59.286 33.333 0.00 0.00 0.00 1.52
1441 3543 6.543100 TGTTCCAAATTACTCGTAGTGGTTTT 59.457 34.615 0.00 0.00 0.00 2.43
1442 3544 6.056884 TGTTCCAAATTACTCGTAGTGGTTT 58.943 36.000 0.00 0.00 0.00 3.27
1443 3545 5.613329 TGTTCCAAATTACTCGTAGTGGTT 58.387 37.500 0.00 0.00 0.00 3.67
1444 3546 5.011329 TCTGTTCCAAATTACTCGTAGTGGT 59.989 40.000 0.00 0.00 0.00 4.16
1445 3547 5.475719 TCTGTTCCAAATTACTCGTAGTGG 58.524 41.667 0.00 0.00 0.00 4.00
1446 3548 5.577164 CCTCTGTTCCAAATTACTCGTAGTG 59.423 44.000 0.00 0.00 0.00 2.74
1447 3549 5.337330 CCCTCTGTTCCAAATTACTCGTAGT 60.337 44.000 0.00 0.00 0.00 2.73
1448 3550 5.105473 TCCCTCTGTTCCAAATTACTCGTAG 60.105 44.000 0.00 0.00 0.00 3.51
1449 3551 4.773674 TCCCTCTGTTCCAAATTACTCGTA 59.226 41.667 0.00 0.00 0.00 3.43
1450 3552 3.581332 TCCCTCTGTTCCAAATTACTCGT 59.419 43.478 0.00 0.00 0.00 4.18
1451 3553 4.184629 CTCCCTCTGTTCCAAATTACTCG 58.815 47.826 0.00 0.00 0.00 4.18
1452 3554 5.167303 ACTCCCTCTGTTCCAAATTACTC 57.833 43.478 0.00 0.00 0.00 2.59
1453 3555 6.893020 ATACTCCCTCTGTTCCAAATTACT 57.107 37.500 0.00 0.00 0.00 2.24
1454 3556 8.265764 AGTTATACTCCCTCTGTTCCAAATTAC 58.734 37.037 0.00 0.00 0.00 1.89
1455 3557 8.265055 CAGTTATACTCCCTCTGTTCCAAATTA 58.735 37.037 0.00 0.00 0.00 1.40
1456 3558 7.037586 TCAGTTATACTCCCTCTGTTCCAAATT 60.038 37.037 0.00 0.00 0.00 1.82
1457 3559 6.443849 TCAGTTATACTCCCTCTGTTCCAAAT 59.556 38.462 0.00 0.00 0.00 2.32
1458 3560 5.783360 TCAGTTATACTCCCTCTGTTCCAAA 59.217 40.000 0.00 0.00 0.00 3.28
1459 3561 5.338632 TCAGTTATACTCCCTCTGTTCCAA 58.661 41.667 0.00 0.00 0.00 3.53
1460 3562 4.942944 TCAGTTATACTCCCTCTGTTCCA 58.057 43.478 0.00 0.00 0.00 3.53
1461 3563 5.934402 TTCAGTTATACTCCCTCTGTTCC 57.066 43.478 0.00 0.00 0.00 3.62
1462 3564 8.138712 CACTATTCAGTTATACTCCCTCTGTTC 58.861 40.741 0.00 0.00 30.46 3.18
1463 3565 7.620094 ACACTATTCAGTTATACTCCCTCTGTT 59.380 37.037 0.00 0.00 30.46 3.16
1464 3566 7.068839 CACACTATTCAGTTATACTCCCTCTGT 59.931 40.741 0.00 0.00 30.46 3.41
1465 3567 7.285629 TCACACTATTCAGTTATACTCCCTCTG 59.714 40.741 0.00 0.00 30.46 3.35
1466 3568 7.355101 TCACACTATTCAGTTATACTCCCTCT 58.645 38.462 0.00 0.00 30.46 3.69
1467 3569 7.584122 TCACACTATTCAGTTATACTCCCTC 57.416 40.000 0.00 0.00 30.46 4.30
1468 3570 9.303116 CTATCACACTATTCAGTTATACTCCCT 57.697 37.037 0.00 0.00 30.46 4.20
1469 3571 8.030106 GCTATCACACTATTCAGTTATACTCCC 58.970 40.741 0.00 0.00 30.46 4.30
1470 3572 8.798402 AGCTATCACACTATTCAGTTATACTCC 58.202 37.037 0.00 0.00 30.46 3.85
1472 3574 9.973450 CAAGCTATCACACTATTCAGTTATACT 57.027 33.333 0.00 0.00 30.46 2.12
1473 3575 9.751542 ACAAGCTATCACACTATTCAGTTATAC 57.248 33.333 0.00 0.00 30.46 1.47
1503 3605 3.704061 GAGAACTGGAGAGGAACAGCTAT 59.296 47.826 0.00 0.00 38.25 2.97
1540 3642 4.588951 TGCTTTCTGGACGGTATGAGATAT 59.411 41.667 0.00 0.00 0.00 1.63
1541 3643 3.958147 TGCTTTCTGGACGGTATGAGATA 59.042 43.478 0.00 0.00 0.00 1.98
1549 3651 3.418684 ACTTATTGCTTTCTGGACGGT 57.581 42.857 0.00 0.00 0.00 4.83
1575 3677 8.009974 GCCACTTAAATACGCAGAATACATAAG 58.990 37.037 0.00 0.00 0.00 1.73
1613 3715 7.769272 AAATAAATGTCCAACAAACACAGTG 57.231 32.000 0.00 0.00 0.00 3.66
1695 3801 3.093057 ACTGGCGGCCATTACATTTAAA 58.907 40.909 24.10 0.00 30.82 1.52
1711 3817 3.873952 GTGATGAGAAGGACAATACTGGC 59.126 47.826 0.00 0.00 0.00 4.85
1713 3819 6.343703 TCATGTGATGAGAAGGACAATACTG 58.656 40.000 0.00 0.00 33.59 2.74
1752 5441 4.826274 AGAACTCAATTGCTAGCTACCA 57.174 40.909 17.23 0.00 0.00 3.25
1801 5490 1.746727 CGATCGAGGAAAGCAGCACG 61.747 60.000 10.26 0.00 0.00 5.34
1803 5492 0.179127 CTCGATCGAGGAAAGCAGCA 60.179 55.000 32.81 0.85 38.51 4.41
1818 5757 2.857483 TGGCAGGAAAATTGAACTCGA 58.143 42.857 0.00 0.00 0.00 4.04
1827 5766 5.612725 TTTTCAGAGTTTGGCAGGAAAAT 57.387 34.783 0.00 0.00 31.52 1.82
1839 5778 2.867624 TGGAGCTGCATTTTCAGAGTT 58.132 42.857 2.72 0.00 36.19 3.01
1960 5917 2.634815 ATGCGAATTCAGAGCTGGAT 57.365 45.000 6.22 0.00 0.00 3.41
1984 5941 9.822185 ATGAAGCAATACTATATCATGCGAATA 57.178 29.630 0.00 0.00 41.72 1.75
1985 5942 8.610035 CATGAAGCAATACTATATCATGCGAAT 58.390 33.333 0.00 0.00 41.72 3.34
1986 5943 7.967178 CATGAAGCAATACTATATCATGCGAA 58.033 34.615 0.00 0.00 41.72 4.70
1987 5944 7.529880 CATGAAGCAATACTATATCATGCGA 57.470 36.000 0.00 0.00 41.72 5.10
2180 6222 2.230266 CACCGTTAGTTGATTTTGGGGG 59.770 50.000 0.00 0.00 0.00 5.40
2187 6229 2.566913 TGTGTGCACCGTTAGTTGATT 58.433 42.857 15.69 0.00 0.00 2.57
2199 6241 1.134946 GGGGCTAATGAATGTGTGCAC 59.865 52.381 10.75 10.75 0.00 4.57
2232 6404 1.014352 ACTAATGGTTTCGATGGCGC 58.986 50.000 0.00 0.00 37.46 6.53
2304 6476 7.042119 GCATAATTGGTTTGTACTTTGCAGTTT 60.042 33.333 0.00 0.00 34.06 2.66
2345 6517 4.541779 TCATCACACGTTAACCAAATTGC 58.458 39.130 0.00 0.00 0.00 3.56
2356 6529 7.987458 ACTAGATTATCCAAATCATCACACGTT 59.013 33.333 0.00 0.00 0.00 3.99
2397 6570 4.486574 TGATGCACACAAATACACACAG 57.513 40.909 0.00 0.00 0.00 3.66
2673 6869 0.470341 GAGATGCCACTAACTCCCCC 59.530 60.000 0.00 0.00 0.00 5.40
2741 6937 4.981806 TGCCTCCAAATATTTTTCTCCG 57.018 40.909 0.00 0.00 0.00 4.63
2928 7124 3.703052 ACCCGGGAGTGTATAGTGTAAAG 59.297 47.826 32.02 0.00 0.00 1.85
3022 7221 2.094803 TCATGCGTGGCTTACATTTTGG 60.095 45.455 5.98 0.00 0.00 3.28
3178 7383 4.619336 GCCAGCGTTCGAAAATGAATAAAA 59.381 37.500 0.00 0.00 0.00 1.52
3179 7384 4.083003 AGCCAGCGTTCGAAAATGAATAAA 60.083 37.500 0.00 0.00 0.00 1.40
3182 7387 1.812571 AGCCAGCGTTCGAAAATGAAT 59.187 42.857 0.00 0.00 0.00 2.57
3248 7453 4.091509 CGTCATGCTACACTAGAACAAACC 59.908 45.833 0.00 0.00 0.00 3.27
3359 7579 8.586879 AGGAAAAAGATTAAAGAGGAATCTGG 57.413 34.615 0.00 0.00 41.71 3.86
3371 7591 9.227777 GTTTCTACAGCCTAGGAAAAAGATTAA 57.772 33.333 14.75 0.00 30.98 1.40
3377 7597 7.913789 TCTATGTTTCTACAGCCTAGGAAAAA 58.086 34.615 14.75 0.00 37.77 1.94
3415 7635 2.463752 TCGGCTAGCTTTCCTCCTTTA 58.536 47.619 15.72 0.00 0.00 1.85
3416 7636 1.276622 TCGGCTAGCTTTCCTCCTTT 58.723 50.000 15.72 0.00 0.00 3.11
3423 7646 6.200097 TGTTTTCAAATTTTCGGCTAGCTTTC 59.800 34.615 15.72 0.00 0.00 2.62
3527 7890 6.923508 GCCCCATCTAATTAAATTTAGCACAC 59.076 38.462 0.00 0.00 0.00 3.82
3642 8424 2.362120 GCTGAAGGCCTGCACCAT 60.362 61.111 10.33 0.00 39.25 3.55
3643 8425 3.888460 TGCTGAAGGCCTGCACCA 61.888 61.111 10.33 7.07 43.43 4.17
3699 8482 9.494271 GATTTACTATCATACCAATGCTCTCAA 57.506 33.333 0.00 0.00 32.76 3.02
3767 8551 8.275758 AGATATGATGTACCGTCTATAGGATGT 58.724 37.037 0.00 0.00 0.00 3.06
3768 8552 8.684386 AGATATGATGTACCGTCTATAGGATG 57.316 38.462 0.00 0.00 0.00 3.51
3816 8603 3.681874 GCTAGTTAAGGCGTTTCCATCCT 60.682 47.826 0.00 0.00 37.29 3.24
3894 8683 9.645059 GTGATTATAGATCGAAGGATGATCAAA 57.355 33.333 0.00 0.00 43.73 2.69
3948 8737 5.619309 CGTGTACGACATGCTATAATAGCCT 60.619 44.000 0.00 0.00 46.12 4.58
4013 8802 9.174166 GGTTTATACAACACTGAATATTGGAGT 57.826 33.333 0.00 0.00 0.00 3.85
4065 8854 9.609346 GGGCTATAACTAACAAGTCTATTCAAA 57.391 33.333 0.00 0.00 0.00 2.69
4113 8906 8.723311 CAATGAATGTATTGCACCAAAGAAAAT 58.277 29.630 0.00 0.00 31.96 1.82
4114 8907 7.930325 TCAATGAATGTATTGCACCAAAGAAAA 59.070 29.630 0.00 0.00 37.83 2.29
4116 8909 6.990798 TCAATGAATGTATTGCACCAAAGAA 58.009 32.000 0.00 0.00 37.83 2.52
4135 8928 1.673168 GCCAGTTCTAGGGCTCAATG 58.327 55.000 0.84 0.00 46.74 2.82
4148 8941 0.116940 ATTGGTTGGGGATGCCAGTT 59.883 50.000 5.30 0.00 33.41 3.16
4151 8944 0.413037 AAGATTGGTTGGGGATGCCA 59.587 50.000 5.30 0.00 0.00 4.92
4170 8963 6.309436 CGATACCGTACAAATTAGCGATAGA 58.691 40.000 0.00 0.00 39.76 1.98
4187 8980 1.343506 GCGGCCTTAATACGATACCG 58.656 55.000 0.00 0.00 41.97 4.02
4200 8993 1.757306 CATATTGGAGAGGCGGCCT 59.243 57.895 24.13 24.13 36.03 5.19
4201 8994 1.968540 GCATATTGGAGAGGCGGCC 60.969 63.158 12.11 12.11 0.00 6.13
4236 9029 5.532406 CACAAGAATGTTCAAAAGGAGGAGA 59.468 40.000 0.00 0.00 37.82 3.71
4237 9030 5.300286 ACACAAGAATGTTCAAAAGGAGGAG 59.700 40.000 0.00 0.00 37.82 3.69
4246 9040 3.066064 CCGGACAACACAAGAATGTTCAA 59.934 43.478 0.00 0.00 40.89 2.69
4267 9061 5.050499 CGAGCTTCACATTGATTAGATCACC 60.050 44.000 0.00 0.00 39.39 4.02
4270 9064 5.176590 GGTCGAGCTTCACATTGATTAGATC 59.823 44.000 7.51 0.00 0.00 2.75
4286 9081 4.327680 AGAAAAATTGCTAAGGTCGAGCT 58.672 39.130 12.24 12.24 40.76 4.09
4288 9083 4.938226 AGGAGAAAAATTGCTAAGGTCGAG 59.062 41.667 0.00 0.00 0.00 4.04
4290 9085 6.238484 CCATAGGAGAAAAATTGCTAAGGTCG 60.238 42.308 0.00 0.00 0.00 4.79
4295 9090 8.865090 TGTTTTCCATAGGAGAAAAATTGCTAA 58.135 29.630 0.60 0.00 42.97 3.09
4296 9091 8.303876 GTGTTTTCCATAGGAGAAAAATTGCTA 58.696 33.333 0.60 0.00 42.97 3.49
4299 9094 8.524870 CTGTGTTTTCCATAGGAGAAAAATTG 57.475 34.615 0.60 0.00 42.97 2.32
4310 9105 2.223340 GCATCGCCTGTGTTTTCCATAG 60.223 50.000 0.00 0.00 32.41 2.23
4311 9106 1.742831 GCATCGCCTGTGTTTTCCATA 59.257 47.619 0.00 0.00 0.00 2.74
4312 9107 0.527565 GCATCGCCTGTGTTTTCCAT 59.472 50.000 0.00 0.00 0.00 3.41
4313 9108 1.523154 GGCATCGCCTGTGTTTTCCA 61.523 55.000 0.00 0.00 46.69 3.53
4314 9109 1.212751 GGCATCGCCTGTGTTTTCC 59.787 57.895 0.00 0.00 46.69 3.13
4327 9122 5.933286 GAGCATCACACATGCATGGCATC 62.933 52.174 29.41 15.85 46.77 3.91
4333 9128 1.296727 CTCGAGCATCACACATGCAT 58.703 50.000 0.00 0.00 46.77 3.96
4337 9132 2.934553 CAATGACTCGAGCATCACACAT 59.065 45.455 13.61 4.52 33.17 3.21
4343 9138 2.474816 GTACCCAATGACTCGAGCATC 58.525 52.381 13.61 3.99 0.00 3.91
4345 9140 0.172578 CGTACCCAATGACTCGAGCA 59.827 55.000 13.61 12.13 0.00 4.26
4346 9141 1.146358 GCGTACCCAATGACTCGAGC 61.146 60.000 13.61 6.11 0.00 5.03
4347 9142 0.456221 AGCGTACCCAATGACTCGAG 59.544 55.000 11.84 11.84 0.00 4.04
4355 9150 2.124411 AGTCCCATTAGCGTACCCAAT 58.876 47.619 0.00 0.00 0.00 3.16
4357 9152 1.208535 CAAGTCCCATTAGCGTACCCA 59.791 52.381 0.00 0.00 0.00 4.51
4367 9162 4.722700 AGCCGCGCAAGTCCCATT 62.723 61.111 8.75 0.00 41.68 3.16
4397 9192 5.123227 TCCTTTGTCTCTGTTGGTTACAAG 58.877 41.667 0.00 0.00 37.25 3.16
4437 9232 6.931838 ACACAAGATTCATACTCGAGGTTTA 58.068 36.000 18.41 0.00 0.00 2.01
4443 9238 4.864806 GCTTGACACAAGATTCATACTCGA 59.135 41.667 14.44 0.00 0.00 4.04
4444 9239 4.627035 TGCTTGACACAAGATTCATACTCG 59.373 41.667 14.44 0.00 0.00 4.18
4456 9251 2.136298 TTTGGTCCTGCTTGACACAA 57.864 45.000 8.18 7.07 36.97 3.33
4459 9254 1.619654 CCATTTGGTCCTGCTTGACA 58.380 50.000 8.18 0.00 36.97 3.58
4472 9267 1.915141 AGCAGGGAACTCACCATTTG 58.085 50.000 0.00 0.00 40.21 2.32
4478 9273 1.230324 GACACAAGCAGGGAACTCAC 58.770 55.000 0.00 0.00 40.21 3.51
4494 9289 4.202315 CCAACGTATCTGGGGATATTGACA 60.202 45.833 0.00 0.00 36.88 3.58
4508 9303 1.727467 GCACATGCCCCAACGTATC 59.273 57.895 0.00 0.00 34.31 2.24
4547 9342 4.688021 CAACCTAATGTAGAGACAGGCTC 58.312 47.826 0.00 0.00 44.29 4.70
4551 9346 5.423015 ACATGCAACCTAATGTAGAGACAG 58.577 41.667 0.00 0.00 39.50 3.51
4553 9348 6.109359 AGAACATGCAACCTAATGTAGAGAC 58.891 40.000 0.00 0.00 35.99 3.36
4560 9355 4.521146 AGAGGAGAACATGCAACCTAATG 58.479 43.478 0.00 0.00 0.00 1.90
4561 9356 4.225942 TGAGAGGAGAACATGCAACCTAAT 59.774 41.667 0.00 0.00 0.00 1.73
4578 9373 6.896021 AGATATTTGCATTGGATTGAGAGG 57.104 37.500 0.00 0.00 0.00 3.69
4579 9374 7.013942 TGGAAGATATTTGCATTGGATTGAGAG 59.986 37.037 0.00 0.00 0.00 3.20
4582 9377 6.041182 CCTGGAAGATATTTGCATTGGATTGA 59.959 38.462 0.00 0.00 34.07 2.57
4597 9392 0.539986 GCCCACGAACCTGGAAGATA 59.460 55.000 0.00 0.00 34.07 1.98
4599 9394 1.701031 TTGCCCACGAACCTGGAAGA 61.701 55.000 0.00 0.00 34.07 2.87
4600 9395 0.609131 ATTGCCCACGAACCTGGAAG 60.609 55.000 0.00 0.00 32.30 3.46
4601 9396 0.178975 AATTGCCCACGAACCTGGAA 60.179 50.000 0.00 0.00 32.30 3.53
4602 9397 0.893270 CAATTGCCCACGAACCTGGA 60.893 55.000 0.00 0.00 32.30 3.86
4603 9398 1.586028 CAATTGCCCACGAACCTGG 59.414 57.895 0.00 0.00 0.00 4.45
4604 9399 1.586028 CCAATTGCCCACGAACCTG 59.414 57.895 0.00 0.00 0.00 4.00
4611 9411 3.460103 CTCATATTTGCCAATTGCCCAC 58.540 45.455 0.00 0.00 40.16 4.61
4643 9443 3.278574 TGAAATAGTCATTTGCCGGGAG 58.721 45.455 2.18 0.00 34.44 4.30
4646 9446 4.433186 TGTTGAAATAGTCATTTGCCGG 57.567 40.909 0.00 0.00 35.70 6.13
4670 9470 6.564873 GCCATTGTATCATCGAGCTCTTTTAC 60.565 42.308 12.85 7.10 0.00 2.01
4675 9475 2.632028 AGCCATTGTATCATCGAGCTCT 59.368 45.455 12.85 0.00 0.00 4.09
4695 9495 2.804933 GCGAGAGGGCATCCTTCTAAAG 60.805 54.545 0.00 0.00 45.05 1.85
4697 9497 0.753262 GCGAGAGGGCATCCTTCTAA 59.247 55.000 0.00 0.00 45.05 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.