Multiple sequence alignment - TraesCS3D01G009100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G009100 | chr3D | 100.000 | 4131 | 0 | 0 | 1 | 4131 | 3086914 | 3082784 | 0.000000e+00 | 7629.0 |
1 | TraesCS3D01G009100 | chr3D | 83.815 | 1316 | 144 | 32 | 2525 | 3804 | 3054171 | 3052889 | 0.000000e+00 | 1186.0 |
2 | TraesCS3D01G009100 | chr3D | 85.884 | 1013 | 113 | 11 | 2525 | 3532 | 3073782 | 3072795 | 0.000000e+00 | 1051.0 |
3 | TraesCS3D01G009100 | chr3D | 94.497 | 527 | 27 | 1 | 1933 | 2459 | 614852833 | 614853357 | 0.000000e+00 | 811.0 |
4 | TraesCS3D01G009100 | chr3D | 89.831 | 590 | 38 | 10 | 1933 | 2522 | 614854320 | 614854887 | 0.000000e+00 | 737.0 |
5 | TraesCS3D01G009100 | chr3D | 84.687 | 751 | 99 | 13 | 4 | 752 | 514850436 | 514849700 | 0.000000e+00 | 736.0 |
6 | TraesCS3D01G009100 | chr3D | 83.761 | 585 | 53 | 18 | 786 | 1357 | 3055185 | 3054630 | 2.200000e-142 | 516.0 |
7 | TraesCS3D01G009100 | chr3D | 81.374 | 655 | 53 | 29 | 795 | 1432 | 3076006 | 3075404 | 1.740000e-128 | 470.0 |
8 | TraesCS3D01G009100 | chr3D | 85.317 | 252 | 25 | 8 | 1173 | 1418 | 3154918 | 3154673 | 2.470000e-62 | 250.0 |
9 | TraesCS3D01G009100 | chr3D | 89.071 | 183 | 17 | 1 | 3626 | 3808 | 3072716 | 3072537 | 1.490000e-54 | 224.0 |
10 | TraesCS3D01G009100 | chr3D | 91.753 | 97 | 6 | 2 | 1 | 97 | 13414731 | 13414825 | 2.590000e-27 | 134.0 |
11 | TraesCS3D01G009100 | chr3D | 92.208 | 77 | 6 | 0 | 1498 | 1574 | 575678717 | 575678793 | 4.370000e-20 | 110.0 |
12 | TraesCS3D01G009100 | chr3A | 86.313 | 1264 | 131 | 21 | 2561 | 3804 | 126863 | 125622 | 0.000000e+00 | 1338.0 |
13 | TraesCS3D01G009100 | chr3A | 81.839 | 1294 | 189 | 34 | 2529 | 3800 | 162405 | 161136 | 0.000000e+00 | 1046.0 |
14 | TraesCS3D01G009100 | chr3A | 86.657 | 712 | 71 | 12 | 795 | 1491 | 142648 | 141946 | 0.000000e+00 | 767.0 |
15 | TraesCS3D01G009100 | chr3A | 86.878 | 663 | 75 | 5 | 850 | 1501 | 163337 | 162676 | 0.000000e+00 | 732.0 |
16 | TraesCS3D01G009100 | chr3A | 83.470 | 732 | 105 | 13 | 2526 | 3254 | 141605 | 140887 | 0.000000e+00 | 667.0 |
17 | TraesCS3D01G009100 | chr3A | 85.666 | 593 | 68 | 8 | 2525 | 3116 | 131533 | 130957 | 3.530000e-170 | 608.0 |
18 | TraesCS3D01G009100 | chr3A | 85.985 | 528 | 41 | 5 | 1933 | 2459 | 28434997 | 28434502 | 6.080000e-148 | 534.0 |
19 | TraesCS3D01G009100 | chr3A | 85.227 | 528 | 45 | 5 | 1933 | 2459 | 28436460 | 28435965 | 2.850000e-141 | 512.0 |
20 | TraesCS3D01G009100 | chr3A | 80.704 | 710 | 71 | 31 | 795 | 1489 | 132568 | 131910 | 3.710000e-135 | 492.0 |
21 | TraesCS3D01G009100 | chr3A | 86.651 | 427 | 47 | 6 | 3104 | 3530 | 130640 | 130224 | 8.090000e-127 | 464.0 |
22 | TraesCS3D01G009100 | chr3A | 83.205 | 518 | 52 | 20 | 861 | 1370 | 127838 | 127348 | 3.790000e-120 | 442.0 |
23 | TraesCS3D01G009100 | chr3A | 92.484 | 306 | 22 | 1 | 2155 | 2459 | 28437733 | 28437428 | 1.760000e-118 | 436.0 |
24 | TraesCS3D01G009100 | chr3A | 90.706 | 269 | 22 | 2 | 2192 | 2459 | 722458647 | 722458913 | 5.080000e-94 | 355.0 |
25 | TraesCS3D01G009100 | chr3A | 94.286 | 175 | 9 | 1 | 3630 | 3804 | 140363 | 140190 | 2.450000e-67 | 267.0 |
26 | TraesCS3D01G009100 | chr3A | 87.736 | 212 | 25 | 1 | 3884 | 4095 | 80540435 | 80540225 | 3.190000e-61 | 246.0 |
27 | TraesCS3D01G009100 | chr3A | 83.658 | 257 | 22 | 10 | 3625 | 3866 | 130146 | 129895 | 1.490000e-54 | 224.0 |
28 | TraesCS3D01G009100 | chr3B | 84.446 | 1318 | 152 | 23 | 2526 | 3804 | 2344873 | 2346176 | 0.000000e+00 | 1249.0 |
29 | TraesCS3D01G009100 | chr3B | 83.969 | 1310 | 144 | 27 | 2529 | 3804 | 2256618 | 2255341 | 0.000000e+00 | 1195.0 |
30 | TraesCS3D01G009100 | chr3B | 86.081 | 1013 | 117 | 19 | 2529 | 3530 | 2109781 | 2108782 | 0.000000e+00 | 1068.0 |
31 | TraesCS3D01G009100 | chr3B | 85.050 | 602 | 75 | 5 | 915 | 1501 | 2343983 | 2344584 | 2.130000e-167 | 599.0 |
32 | TraesCS3D01G009100 | chr3B | 81.501 | 746 | 78 | 31 | 795 | 1509 | 2257684 | 2256968 | 3.610000e-155 | 558.0 |
33 | TraesCS3D01G009100 | chr3B | 89.414 | 444 | 42 | 2 | 1051 | 1491 | 2268117 | 2267676 | 4.670000e-154 | 555.0 |
34 | TraesCS3D01G009100 | chr3B | 89.730 | 185 | 15 | 3 | 3625 | 3808 | 2265794 | 2265613 | 2.480000e-57 | 233.0 |
35 | TraesCS3D01G009100 | chr3B | 86.957 | 184 | 20 | 1 | 3625 | 3808 | 2108704 | 2108525 | 1.950000e-48 | 204.0 |
36 | TraesCS3D01G009100 | chr3B | 80.435 | 276 | 27 | 17 | 1084 | 1339 | 2130566 | 2130298 | 7.050000e-43 | 185.0 |
37 | TraesCS3D01G009100 | chr3B | 80.435 | 276 | 27 | 17 | 1084 | 1339 | 2322910 | 2323178 | 7.050000e-43 | 185.0 |
38 | TraesCS3D01G009100 | chr3B | 90.179 | 112 | 9 | 1 | 3385 | 3496 | 2266016 | 2265907 | 1.200000e-30 | 145.0 |
39 | TraesCS3D01G009100 | chr3B | 94.030 | 67 | 2 | 2 | 817 | 883 | 2343927 | 2343991 | 2.630000e-17 | 100.0 |
40 | TraesCS3D01G009100 | chr3B | 87.356 | 87 | 10 | 1 | 1489 | 1574 | 167250724 | 167250810 | 9.450000e-17 | 99.0 |
41 | TraesCS3D01G009100 | chr3B | 97.368 | 38 | 0 | 1 | 1571 | 1607 | 187353199 | 187353236 | 3.450000e-06 | 63.9 |
42 | TraesCS3D01G009100 | chr4D | 86.376 | 756 | 88 | 11 | 1 | 752 | 83271157 | 83270413 | 0.000000e+00 | 811.0 |
43 | TraesCS3D01G009100 | chr4D | 95.775 | 71 | 3 | 0 | 1498 | 1568 | 106682054 | 106682124 | 9.380000e-22 | 115.0 |
44 | TraesCS3D01G009100 | chr4D | 100.000 | 35 | 0 | 0 | 1569 | 1603 | 106682088 | 106682122 | 9.590000e-07 | 65.8 |
45 | TraesCS3D01G009100 | chr7A | 92.105 | 532 | 39 | 2 | 1929 | 2459 | 6647120 | 6646591 | 0.000000e+00 | 747.0 |
46 | TraesCS3D01G009100 | chr7A | 91.139 | 79 | 6 | 1 | 1497 | 1574 | 138505550 | 138505628 | 5.650000e-19 | 106.0 |
47 | TraesCS3D01G009100 | chr7A | 95.455 | 44 | 1 | 1 | 1618 | 1661 | 134607578 | 134607620 | 7.410000e-08 | 69.4 |
48 | TraesCS3D01G009100 | chr2D | 84.717 | 759 | 98 | 12 | 1 | 750 | 535755297 | 535756046 | 0.000000e+00 | 743.0 |
49 | TraesCS3D01G009100 | chr2D | 92.308 | 78 | 6 | 0 | 1497 | 1574 | 250630725 | 250630802 | 1.210000e-20 | 111.0 |
50 | TraesCS3D01G009100 | chr2D | 100.000 | 34 | 0 | 0 | 1569 | 1602 | 594382947 | 594382914 | 3.450000e-06 | 63.9 |
51 | TraesCS3D01G009100 | chr2D | 94.444 | 36 | 2 | 0 | 1627 | 1662 | 56809458 | 56809423 | 5.770000e-04 | 56.5 |
52 | TraesCS3D01G009100 | chr5A | 84.626 | 748 | 102 | 8 | 15 | 752 | 608853459 | 608854203 | 0.000000e+00 | 732.0 |
53 | TraesCS3D01G009100 | chr5A | 95.122 | 41 | 1 | 1 | 1570 | 1610 | 696934955 | 696934916 | 3.450000e-06 | 63.9 |
54 | TraesCS3D01G009100 | chr2B | 91.321 | 530 | 42 | 3 | 1933 | 2459 | 383406983 | 383406455 | 0.000000e+00 | 721.0 |
55 | TraesCS3D01G009100 | chr2B | 88.701 | 531 | 33 | 6 | 1933 | 2459 | 383389644 | 383389137 | 1.260000e-174 | 623.0 |
56 | TraesCS3D01G009100 | chr2B | 93.143 | 175 | 12 | 0 | 1933 | 2107 | 431156546 | 431156720 | 1.470000e-64 | 257.0 |
57 | TraesCS3D01G009100 | chr2B | 92.571 | 175 | 13 | 0 | 1933 | 2107 | 431158000 | 431158174 | 6.860000e-63 | 252.0 |
58 | TraesCS3D01G009100 | chr2B | 97.297 | 37 | 1 | 0 | 1626 | 1662 | 399693327 | 399693363 | 3.450000e-06 | 63.9 |
59 | TraesCS3D01G009100 | chr1D | 83.963 | 767 | 103 | 15 | 1 | 752 | 365441101 | 365441862 | 0.000000e+00 | 717.0 |
60 | TraesCS3D01G009100 | chr1D | 82.650 | 732 | 107 | 12 | 25 | 752 | 467586058 | 467586773 | 7.540000e-177 | 630.0 |
61 | TraesCS3D01G009100 | chr1D | 88.372 | 215 | 25 | 0 | 3881 | 4095 | 402111787 | 402111573 | 4.100000e-65 | 259.0 |
62 | TraesCS3D01G009100 | chr1D | 87.907 | 215 | 26 | 0 | 3881 | 4095 | 401966784 | 401966570 | 1.910000e-63 | 254.0 |
63 | TraesCS3D01G009100 | chr1D | 87.442 | 215 | 27 | 0 | 3881 | 4095 | 401925008 | 401924794 | 8.870000e-62 | 248.0 |
64 | TraesCS3D01G009100 | chr1D | 87.215 | 219 | 27 | 1 | 3877 | 4095 | 402067483 | 402067266 | 8.870000e-62 | 248.0 |
65 | TraesCS3D01G009100 | chr1D | 93.671 | 79 | 3 | 2 | 1497 | 1574 | 488565450 | 488565373 | 2.610000e-22 | 117.0 |
66 | TraesCS3D01G009100 | chr1D | 100.000 | 35 | 0 | 0 | 1569 | 1603 | 488565415 | 488565381 | 9.590000e-07 | 65.8 |
67 | TraesCS3D01G009100 | chr4A | 83.607 | 732 | 102 | 12 | 26 | 752 | 667035574 | 667034856 | 0.000000e+00 | 671.0 |
68 | TraesCS3D01G009100 | chr4A | 92.308 | 78 | 6 | 0 | 1497 | 1574 | 450788271 | 450788348 | 1.210000e-20 | 111.0 |
69 | TraesCS3D01G009100 | chr4A | 100.000 | 35 | 0 | 0 | 1569 | 1603 | 450788306 | 450788340 | 9.590000e-07 | 65.8 |
70 | TraesCS3D01G009100 | chr4A | 94.872 | 39 | 2 | 0 | 1627 | 1665 | 655649758 | 655649720 | 1.240000e-05 | 62.1 |
71 | TraesCS3D01G009100 | chr4B | 82.695 | 757 | 104 | 14 | 1 | 752 | 35260606 | 35259872 | 0.000000e+00 | 647.0 |
72 | TraesCS3D01G009100 | chr4B | 82.277 | 773 | 113 | 14 | 1 | 752 | 177197287 | 177196518 | 0.000000e+00 | 647.0 |
73 | TraesCS3D01G009100 | chr4B | 92.571 | 175 | 13 | 0 | 1933 | 2107 | 529564842 | 529565016 | 6.860000e-63 | 252.0 |
74 | TraesCS3D01G009100 | chr4B | 83.957 | 187 | 26 | 4 | 1105 | 1289 | 653286916 | 653286732 | 4.240000e-40 | 176.0 |
75 | TraesCS3D01G009100 | chr4B | 87.629 | 97 | 9 | 3 | 1478 | 1574 | 638361532 | 638361439 | 4.370000e-20 | 110.0 |
76 | TraesCS3D01G009100 | chr4B | 96.970 | 33 | 1 | 0 | 1629 | 1661 | 614118624 | 614118656 | 5.770000e-04 | 56.5 |
77 | TraesCS3D01G009100 | chr6A | 88.679 | 530 | 46 | 8 | 1933 | 2459 | 93279618 | 93280136 | 5.830000e-178 | 634.0 |
78 | TraesCS3D01G009100 | chr6A | 85.859 | 297 | 29 | 7 | 1933 | 2227 | 93277796 | 93278081 | 1.870000e-78 | 303.0 |
79 | TraesCS3D01G009100 | chr6B | 91.450 | 269 | 20 | 2 | 2192 | 2459 | 943811 | 944077 | 2.350000e-97 | 366.0 |
80 | TraesCS3D01G009100 | chr6B | 94.872 | 39 | 2 | 0 | 1627 | 1665 | 130900384 | 130900346 | 1.240000e-05 | 62.1 |
81 | TraesCS3D01G009100 | chr6B | 94.444 | 36 | 2 | 0 | 1627 | 1662 | 688596948 | 688596983 | 5.770000e-04 | 56.5 |
82 | TraesCS3D01G009100 | chr5D | 89.706 | 204 | 21 | 0 | 3892 | 4095 | 58277464 | 58277261 | 1.140000e-65 | 261.0 |
83 | TraesCS3D01G009100 | chr1A | 88.626 | 211 | 24 | 0 | 3885 | 4095 | 34150838 | 34150628 | 1.470000e-64 | 257.0 |
84 | TraesCS3D01G009100 | chr5B | 87.558 | 217 | 25 | 2 | 3878 | 4094 | 347274300 | 347274086 | 2.470000e-62 | 250.0 |
85 | TraesCS3D01G009100 | chr5B | 90.123 | 81 | 7 | 1 | 1495 | 1574 | 490561456 | 490561536 | 2.030000e-18 | 104.0 |
86 | TraesCS3D01G009100 | chr5B | 100.000 | 35 | 0 | 0 | 1569 | 1603 | 490561493 | 490561527 | 9.590000e-07 | 65.8 |
87 | TraesCS3D01G009100 | chr5B | 97.222 | 36 | 1 | 0 | 1627 | 1662 | 147459003 | 147459038 | 1.240000e-05 | 62.1 |
88 | TraesCS3D01G009100 | chr1B | 87.736 | 212 | 25 | 1 | 3884 | 4095 | 91965431 | 91965641 | 3.190000e-61 | 246.0 |
89 | TraesCS3D01G009100 | chrUn | 100.000 | 35 | 0 | 0 | 1571 | 1605 | 37102532 | 37102566 | 9.590000e-07 | 65.8 |
90 | TraesCS3D01G009100 | chrUn | 88.679 | 53 | 2 | 3 | 1551 | 1603 | 31789544 | 31789592 | 1.240000e-05 | 62.1 |
91 | TraesCS3D01G009100 | chr2A | 94.595 | 37 | 2 | 0 | 1627 | 1663 | 649489466 | 649489430 | 1.600000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3D01G009100 | chr3D | 3082784 | 3086914 | 4130 | True | 7629.000000 | 7629 | 100.000000 | 1 | 4131 | 1 | chr3D.!!$R1 | 4130 |
1 | TraesCS3D01G009100 | chr3D | 3052889 | 3055185 | 2296 | True | 851.000000 | 1186 | 83.788000 | 786 | 3804 | 2 | chr3D.!!$R4 | 3018 |
2 | TraesCS3D01G009100 | chr3D | 614852833 | 614854887 | 2054 | False | 774.000000 | 811 | 92.164000 | 1933 | 2522 | 2 | chr3D.!!$F3 | 589 |
3 | TraesCS3D01G009100 | chr3D | 514849700 | 514850436 | 736 | True | 736.000000 | 736 | 84.687000 | 4 | 752 | 1 | chr3D.!!$R3 | 748 |
4 | TraesCS3D01G009100 | chr3D | 3072537 | 3076006 | 3469 | True | 581.666667 | 1051 | 85.443000 | 795 | 3808 | 3 | chr3D.!!$R5 | 3013 |
5 | TraesCS3D01G009100 | chr3A | 161136 | 163337 | 2201 | True | 889.000000 | 1046 | 84.358500 | 850 | 3800 | 2 | chr3A.!!$R4 | 2950 |
6 | TraesCS3D01G009100 | chr3A | 125622 | 132568 | 6946 | True | 594.666667 | 1338 | 84.366167 | 795 | 3866 | 6 | chr3A.!!$R2 | 3071 |
7 | TraesCS3D01G009100 | chr3A | 140190 | 142648 | 2458 | True | 567.000000 | 767 | 88.137667 | 795 | 3804 | 3 | chr3A.!!$R3 | 3009 |
8 | TraesCS3D01G009100 | chr3A | 28434502 | 28437733 | 3231 | True | 494.000000 | 534 | 87.898667 | 1933 | 2459 | 3 | chr3A.!!$R5 | 526 |
9 | TraesCS3D01G009100 | chr3B | 2255341 | 2257684 | 2343 | True | 876.500000 | 1195 | 82.735000 | 795 | 3804 | 2 | chr3B.!!$R3 | 3009 |
10 | TraesCS3D01G009100 | chr3B | 2343927 | 2346176 | 2249 | False | 649.333333 | 1249 | 87.842000 | 817 | 3804 | 3 | chr3B.!!$F4 | 2987 |
11 | TraesCS3D01G009100 | chr3B | 2108525 | 2109781 | 1256 | True | 636.000000 | 1068 | 86.519000 | 2529 | 3808 | 2 | chr3B.!!$R2 | 1279 |
12 | TraesCS3D01G009100 | chr3B | 2265613 | 2268117 | 2504 | True | 311.000000 | 555 | 89.774333 | 1051 | 3808 | 3 | chr3B.!!$R4 | 2757 |
13 | TraesCS3D01G009100 | chr4D | 83270413 | 83271157 | 744 | True | 811.000000 | 811 | 86.376000 | 1 | 752 | 1 | chr4D.!!$R1 | 751 |
14 | TraesCS3D01G009100 | chr7A | 6646591 | 6647120 | 529 | True | 747.000000 | 747 | 92.105000 | 1929 | 2459 | 1 | chr7A.!!$R1 | 530 |
15 | TraesCS3D01G009100 | chr2D | 535755297 | 535756046 | 749 | False | 743.000000 | 743 | 84.717000 | 1 | 750 | 1 | chr2D.!!$F2 | 749 |
16 | TraesCS3D01G009100 | chr5A | 608853459 | 608854203 | 744 | False | 732.000000 | 732 | 84.626000 | 15 | 752 | 1 | chr5A.!!$F1 | 737 |
17 | TraesCS3D01G009100 | chr2B | 383406455 | 383406983 | 528 | True | 721.000000 | 721 | 91.321000 | 1933 | 2459 | 1 | chr2B.!!$R2 | 526 |
18 | TraesCS3D01G009100 | chr2B | 383389137 | 383389644 | 507 | True | 623.000000 | 623 | 88.701000 | 1933 | 2459 | 1 | chr2B.!!$R1 | 526 |
19 | TraesCS3D01G009100 | chr2B | 431156546 | 431158174 | 1628 | False | 254.500000 | 257 | 92.857000 | 1933 | 2107 | 2 | chr2B.!!$F2 | 174 |
20 | TraesCS3D01G009100 | chr1D | 365441101 | 365441862 | 761 | False | 717.000000 | 717 | 83.963000 | 1 | 752 | 1 | chr1D.!!$F1 | 751 |
21 | TraesCS3D01G009100 | chr1D | 467586058 | 467586773 | 715 | False | 630.000000 | 630 | 82.650000 | 25 | 752 | 1 | chr1D.!!$F2 | 727 |
22 | TraesCS3D01G009100 | chr4A | 667034856 | 667035574 | 718 | True | 671.000000 | 671 | 83.607000 | 26 | 752 | 1 | chr4A.!!$R2 | 726 |
23 | TraesCS3D01G009100 | chr4B | 35259872 | 35260606 | 734 | True | 647.000000 | 647 | 82.695000 | 1 | 752 | 1 | chr4B.!!$R1 | 751 |
24 | TraesCS3D01G009100 | chr4B | 177196518 | 177197287 | 769 | True | 647.000000 | 647 | 82.277000 | 1 | 752 | 1 | chr4B.!!$R2 | 751 |
25 | TraesCS3D01G009100 | chr6A | 93277796 | 93280136 | 2340 | False | 468.500000 | 634 | 87.269000 | 1933 | 2459 | 2 | chr6A.!!$F1 | 526 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
736 | 829 | 0.035176 | GAGGATGAGCTGGAGCCATC | 59.965 | 60.0 | 15.98 | 15.98 | 42.58 | 3.51 | F |
739 | 832 | 0.035176 | GATGAGCTGGAGCCATCCTC | 59.965 | 60.0 | 14.42 | 9.24 | 46.80 | 3.71 | F |
2737 | 8424 | 0.178903 | ACCCAACTAGGCAGACTGGA | 60.179 | 55.0 | 4.26 | 0.00 | 32.96 | 3.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2737 | 8424 | 0.469494 | TGTATGATGCCGCCACATCT | 59.531 | 50.000 | 13.16 | 3.99 | 45.51 | 2.90 | R |
2758 | 8445 | 1.975680 | ACCCGTTCCTTGAGCTTCTTA | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 | R |
3968 | 15310 | 0.039617 | TTTTGCTTCCGCCACATTCG | 60.040 | 50.000 | 0.00 | 0.00 | 34.43 | 3.34 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 1.866853 | GCCTCAAACGGGCCTCAAAG | 61.867 | 60.000 | 0.84 | 0.00 | 43.49 | 2.77 |
259 | 305 | 1.745827 | CGGCATCGAAACCCTACCATT | 60.746 | 52.381 | 0.00 | 0.00 | 39.00 | 3.16 |
305 | 363 | 4.404654 | GCCGCCGCAACTTTCCAG | 62.405 | 66.667 | 0.00 | 0.00 | 34.03 | 3.86 |
333 | 396 | 2.511452 | CCGCCTAGTAGCCATGCCT | 61.511 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
334 | 397 | 1.447643 | CGCCTAGTAGCCATGCCTT | 59.552 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
368 | 432 | 2.822707 | AGGAGCAAGCCATTTCTGAT | 57.177 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
393 | 457 | 4.516195 | GGCCGGCTCGAACTCCTC | 62.516 | 72.222 | 28.56 | 0.41 | 0.00 | 3.71 |
451 | 516 | 2.742116 | GGGCTACCTCCGGATGCAA | 61.742 | 63.158 | 3.57 | 0.00 | 0.00 | 4.08 |
480 | 548 | 1.305046 | GGAGGAGGTGGAGGACGAA | 60.305 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
483 | 557 | 0.336737 | AGGAGGTGGAGGACGAAGAT | 59.663 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
488 | 562 | 0.526662 | GTGGAGGACGAAGATGACGT | 59.473 | 55.000 | 0.00 | 0.00 | 46.58 | 4.34 |
504 | 578 | 1.242665 | ACGTGGAAGAGGACGAGGAC | 61.243 | 60.000 | 0.00 | 0.00 | 38.94 | 3.85 |
507 | 581 | 0.959372 | TGGAAGAGGACGAGGACGAC | 60.959 | 60.000 | 0.00 | 0.00 | 42.66 | 4.34 |
661 | 753 | 4.925861 | GCAGGAGATGGAGGCGCC | 62.926 | 72.222 | 21.89 | 21.89 | 37.10 | 6.53 |
691 | 784 | 0.463620 | GAGGAGGTGGAGATGCTCAC | 59.536 | 60.000 | 0.00 | 0.00 | 34.36 | 3.51 |
692 | 785 | 0.980231 | AGGAGGTGGAGATGCTCACC | 60.980 | 60.000 | 4.48 | 4.48 | 34.37 | 4.02 |
693 | 786 | 1.267574 | GGAGGTGGAGATGCTCACCA | 61.268 | 60.000 | 13.92 | 7.17 | 34.73 | 4.17 |
694 | 787 | 0.615331 | GAGGTGGAGATGCTCACCAA | 59.385 | 55.000 | 13.92 | 0.00 | 38.82 | 3.67 |
695 | 788 | 1.211457 | GAGGTGGAGATGCTCACCAAT | 59.789 | 52.381 | 13.92 | 0.00 | 38.82 | 3.16 |
696 | 789 | 2.435805 | GAGGTGGAGATGCTCACCAATA | 59.564 | 50.000 | 13.92 | 0.00 | 38.82 | 1.90 |
697 | 790 | 3.051581 | AGGTGGAGATGCTCACCAATAT | 58.948 | 45.455 | 13.92 | 0.00 | 38.82 | 1.28 |
700 | 793 | 3.047857 | TGGAGATGCTCACCAATATGGA | 58.952 | 45.455 | 2.85 | 0.00 | 41.78 | 3.41 |
701 | 794 | 3.654321 | TGGAGATGCTCACCAATATGGAT | 59.346 | 43.478 | 2.85 | 0.00 | 41.78 | 3.41 |
702 | 795 | 4.008330 | GGAGATGCTCACCAATATGGATG | 58.992 | 47.826 | 2.85 | 0.00 | 41.78 | 3.51 |
703 | 796 | 4.263199 | GGAGATGCTCACCAATATGGATGA | 60.263 | 45.833 | 2.85 | 2.96 | 41.78 | 2.92 |
706 | 799 | 2.779430 | TGCTCACCAATATGGATGAGGT | 59.221 | 45.455 | 20.44 | 0.00 | 40.96 | 3.85 |
707 | 800 | 3.181451 | TGCTCACCAATATGGATGAGGTC | 60.181 | 47.826 | 20.44 | 11.58 | 40.96 | 3.85 |
709 | 802 | 3.304829 | TCACCAATATGGATGAGGTCGA | 58.695 | 45.455 | 2.85 | 0.00 | 40.96 | 4.20 |
711 | 804 | 2.037772 | ACCAATATGGATGAGGTCGAGC | 59.962 | 50.000 | 6.48 | 6.48 | 40.96 | 5.03 |
714 | 807 | 1.179174 | TATGGATGAGGTCGAGCGGG | 61.179 | 60.000 | 9.28 | 0.00 | 0.00 | 6.13 |
716 | 809 | 2.725008 | GATGAGGTCGAGCGGGAG | 59.275 | 66.667 | 9.28 | 0.00 | 0.00 | 4.30 |
718 | 811 | 3.360423 | ATGAGGTCGAGCGGGAGGA | 62.360 | 63.158 | 9.28 | 0.00 | 0.00 | 3.71 |
719 | 812 | 3.213402 | GAGGTCGAGCGGGAGGAG | 61.213 | 72.222 | 9.28 | 0.00 | 0.00 | 3.69 |
720 | 813 | 4.824515 | AGGTCGAGCGGGAGGAGG | 62.825 | 72.222 | 9.28 | 0.00 | 0.00 | 4.30 |
722 | 815 | 2.519780 | GTCGAGCGGGAGGAGGAT | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
723 | 816 | 2.519541 | TCGAGCGGGAGGAGGATG | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
724 | 817 | 2.519541 | CGAGCGGGAGGAGGATGA | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 2.92 |
725 | 818 | 2.560119 | CGAGCGGGAGGAGGATGAG | 61.560 | 68.421 | 0.00 | 0.00 | 0.00 | 2.90 |
726 | 819 | 2.841988 | AGCGGGAGGAGGATGAGC | 60.842 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
727 | 820 | 2.841988 | GCGGGAGGAGGATGAGCT | 60.842 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
732 | 825 | 1.747774 | GAGGAGGATGAGCTGGAGC | 59.252 | 63.158 | 0.00 | 0.00 | 42.49 | 4.70 |
734 | 827 | 2.068821 | GGAGGATGAGCTGGAGCCA | 61.069 | 63.158 | 0.00 | 0.00 | 43.38 | 4.75 |
735 | 828 | 1.417288 | GGAGGATGAGCTGGAGCCAT | 61.417 | 60.000 | 0.00 | 0.00 | 43.38 | 4.40 |
736 | 829 | 0.035176 | GAGGATGAGCTGGAGCCATC | 59.965 | 60.000 | 15.98 | 15.98 | 42.58 | 3.51 |
737 | 830 | 4.796314 | GATGAGCTGGAGCCATCC | 57.204 | 61.111 | 14.42 | 0.00 | 46.87 | 3.51 |
738 | 831 | 2.144040 | GATGAGCTGGAGCCATCCT | 58.856 | 57.895 | 14.42 | 0.00 | 46.80 | 3.24 |
739 | 832 | 0.035176 | GATGAGCTGGAGCCATCCTC | 59.965 | 60.000 | 14.42 | 9.24 | 46.80 | 3.71 |
761 | 854 | 3.536917 | CCCGTCCATGCGAGCCTA | 61.537 | 66.667 | 0.00 | 0.00 | 0.00 | 3.93 |
763 | 856 | 1.532604 | CCCGTCCATGCGAGCCTATA | 61.533 | 60.000 | 0.00 | 0.00 | 0.00 | 1.31 |
764 | 857 | 0.388649 | CCGTCCATGCGAGCCTATAC | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 1.47 |
767 | 860 | 1.344763 | GTCCATGCGAGCCTATACCTT | 59.655 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
768 | 861 | 2.047061 | TCCATGCGAGCCTATACCTTT | 58.953 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
769 | 862 | 2.438021 | TCCATGCGAGCCTATACCTTTT | 59.562 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
770 | 863 | 3.644265 | TCCATGCGAGCCTATACCTTTTA | 59.356 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
771 | 864 | 3.997021 | CCATGCGAGCCTATACCTTTTAG | 59.003 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
772 | 865 | 4.503296 | CCATGCGAGCCTATACCTTTTAGT | 60.503 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
773 | 866 | 4.317671 | TGCGAGCCTATACCTTTTAGTC | 57.682 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
774 | 867 | 3.069158 | TGCGAGCCTATACCTTTTAGTCC | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
775 | 868 | 3.856267 | GCGAGCCTATACCTTTTAGTCCG | 60.856 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
777 | 870 | 3.893813 | GAGCCTATACCTTTTAGTCCGGA | 59.106 | 47.826 | 0.00 | 0.00 | 0.00 | 5.14 |
779 | 872 | 3.244009 | GCCTATACCTTTTAGTCCGGACC | 60.244 | 52.174 | 30.82 | 13.26 | 0.00 | 4.46 |
780 | 873 | 4.221530 | CCTATACCTTTTAGTCCGGACCT | 58.778 | 47.826 | 30.82 | 19.63 | 0.00 | 3.85 |
781 | 874 | 4.652881 | CCTATACCTTTTAGTCCGGACCTT | 59.347 | 45.833 | 30.82 | 16.27 | 0.00 | 3.50 |
782 | 875 | 2.853235 | ACCTTTTAGTCCGGACCTTG | 57.147 | 50.000 | 30.82 | 15.86 | 0.00 | 3.61 |
783 | 876 | 2.052468 | ACCTTTTAGTCCGGACCTTGT | 58.948 | 47.619 | 30.82 | 15.10 | 0.00 | 3.16 |
784 | 877 | 2.440627 | ACCTTTTAGTCCGGACCTTGTT | 59.559 | 45.455 | 30.82 | 14.70 | 0.00 | 2.83 |
899 | 995 | 3.525800 | ACCTGGCATATTTCCCATACC | 57.474 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
933 | 1029 | 4.555689 | AGCATATATCCTCAGATCCCCTC | 58.444 | 47.826 | 0.00 | 0.00 | 33.67 | 4.30 |
979 | 1075 | 2.103373 | CTCGTTCTTCCTCCTCCATCA | 58.897 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
1038 | 1162 | 3.617263 | CCTTCACCTCGGTATTTTCTTCG | 59.383 | 47.826 | 0.00 | 0.00 | 0.00 | 3.79 |
1049 | 1178 | 5.260900 | GGTATTTTCTTCGCCATTACGTTC | 58.739 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1057 | 1186 | 4.086199 | TCGCCATTACGTTCAAATTTCC | 57.914 | 40.909 | 0.00 | 0.00 | 0.00 | 3.13 |
1080 | 1212 | 5.535406 | CCATCTAGAGTATTAAGACCGTGGT | 59.465 | 44.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1093 | 1225 | 0.460109 | CCGTGGTTGCTGATCGATCA | 60.460 | 55.000 | 25.80 | 25.80 | 35.16 | 2.92 |
1117 | 1249 | 2.562298 | CCCTGCTAAGCTAGATGGAGAG | 59.438 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
1161 | 1293 | 3.334054 | AGAGGACCAGGGCAAGCC | 61.334 | 66.667 | 1.52 | 1.52 | 0.00 | 4.35 |
1313 | 1452 | 4.520874 | TGAGAACACGATTCTCTCTTCACT | 59.479 | 41.667 | 24.50 | 0.00 | 43.91 | 3.41 |
1357 | 1562 | 6.479990 | GCATATAACTGAACTGTGTGATAGCA | 59.520 | 38.462 | 0.00 | 0.00 | 0.00 | 3.49 |
1374 | 1579 | 5.871524 | TGATAGCAAGCTAGTTGTTTCTCTG | 59.128 | 40.000 | 7.91 | 0.00 | 38.55 | 3.35 |
1419 | 1634 | 5.884792 | GTGATCTCATCCTGTCCAGAAAAAT | 59.115 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1453 | 1673 | 6.677781 | ATATTCCGAAAATATATGTGCCGG | 57.322 | 37.500 | 0.00 | 0.00 | 37.08 | 6.13 |
1485 | 1705 | 7.820044 | TTAACTGTGTTTGTTGGACATTTTC | 57.180 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1492 | 1712 | 8.877779 | TGTGTTTGTTGGACATTTTCATTTTAG | 58.122 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
1495 | 1715 | 9.535878 | GTTTGTTGGACATTTTCATTTTAGGTA | 57.464 | 29.630 | 0.00 | 0.00 | 0.00 | 3.08 |
1496 | 1716 | 9.535878 | TTTGTTGGACATTTTCATTTTAGGTAC | 57.464 | 29.630 | 0.00 | 0.00 | 0.00 | 3.34 |
1497 | 1717 | 8.472007 | TGTTGGACATTTTCATTTTAGGTACT | 57.528 | 30.769 | 0.00 | 0.00 | 46.37 | 2.73 |
1498 | 1718 | 9.575868 | TGTTGGACATTTTCATTTTAGGTACTA | 57.424 | 29.630 | 0.00 | 0.00 | 41.75 | 1.82 |
1499 | 1719 | 9.836076 | GTTGGACATTTTCATTTTAGGTACTAC | 57.164 | 33.333 | 0.00 | 0.00 | 42.67 | 2.73 |
1502 | 1722 | 9.668497 | GGACATTTTCATTTTAGGTACTACTCT | 57.332 | 33.333 | 0.00 | 0.00 | 42.67 | 3.24 |
1508 | 1728 | 6.421485 | TCATTTTAGGTACTACTCTCTCCGT | 58.579 | 40.000 | 0.00 | 0.00 | 42.67 | 4.69 |
1509 | 1729 | 6.888632 | TCATTTTAGGTACTACTCTCTCCGTT | 59.111 | 38.462 | 0.00 | 0.00 | 42.67 | 4.44 |
1510 | 1730 | 7.395489 | TCATTTTAGGTACTACTCTCTCCGTTT | 59.605 | 37.037 | 0.00 | 0.00 | 42.67 | 3.60 |
1511 | 1731 | 6.749923 | TTTAGGTACTACTCTCTCCGTTTC | 57.250 | 41.667 | 0.00 | 0.00 | 42.67 | 2.78 |
1512 | 1732 | 4.573021 | AGGTACTACTCTCTCCGTTTCT | 57.427 | 45.455 | 0.00 | 0.00 | 36.02 | 2.52 |
1514 | 1734 | 6.059787 | AGGTACTACTCTCTCCGTTTCTAA | 57.940 | 41.667 | 0.00 | 0.00 | 36.02 | 2.10 |
1515 | 1735 | 6.479884 | AGGTACTACTCTCTCCGTTTCTAAA | 58.520 | 40.000 | 0.00 | 0.00 | 36.02 | 1.85 |
1517 | 1737 | 8.270744 | AGGTACTACTCTCTCCGTTTCTAAATA | 58.729 | 37.037 | 0.00 | 0.00 | 36.02 | 1.40 |
1518 | 1738 | 9.065798 | GGTACTACTCTCTCCGTTTCTAAATAT | 57.934 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
1521 | 1741 | 9.287373 | ACTACTCTCTCCGTTTCTAAATATAGG | 57.713 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1522 | 1742 | 9.287373 | CTACTCTCTCCGTTTCTAAATATAGGT | 57.713 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
1523 | 1743 | 8.168790 | ACTCTCTCCGTTTCTAAATATAGGTC | 57.831 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
1524 | 1744 | 7.778853 | ACTCTCTCCGTTTCTAAATATAGGTCA | 59.221 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
1525 | 1745 | 8.707796 | TCTCTCCGTTTCTAAATATAGGTCAT | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
1526 | 1746 | 9.144298 | TCTCTCCGTTTCTAAATATAGGTCATT | 57.856 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1527 | 1747 | 9.765795 | CTCTCCGTTTCTAAATATAGGTCATTT | 57.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1590 | 1810 | 9.909644 | AGACATATTTCAATACGGACTACATAC | 57.090 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
1591 | 1811 | 9.687210 | GACATATTTCAATACGGACTACATACA | 57.313 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1592 | 1812 | 9.692749 | ACATATTTCAATACGGACTACATACAG | 57.307 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
1593 | 1813 | 9.908152 | CATATTTCAATACGGACTACATACAGA | 57.092 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1595 | 1815 | 8.818141 | ATTTCAATACGGACTACATACAGATG | 57.182 | 34.615 | 0.00 | 0.00 | 39.16 | 2.90 |
1597 | 1817 | 8.454570 | TTCAATACGGACTACATACAGATGTA | 57.545 | 34.615 | 0.00 | 0.00 | 44.77 | 2.29 |
1598 | 1818 | 8.631480 | TCAATACGGACTACATACAGATGTAT | 57.369 | 34.615 | 0.00 | 0.00 | 45.42 | 2.29 |
1599 | 1819 | 9.729281 | TCAATACGGACTACATACAGATGTATA | 57.271 | 33.333 | 5.21 | 0.00 | 45.42 | 1.47 |
1603 | 1823 | 8.211116 | ACGGACTACATACAGATGTATATAGC | 57.789 | 38.462 | 15.09 | 9.66 | 45.42 | 2.97 |
1604 | 1824 | 7.282675 | ACGGACTACATACAGATGTATATAGCC | 59.717 | 40.741 | 15.09 | 14.98 | 45.42 | 3.93 |
1605 | 1825 | 7.499563 | CGGACTACATACAGATGTATATAGCCT | 59.500 | 40.741 | 15.09 | 1.20 | 45.42 | 4.58 |
1606 | 1826 | 9.848710 | GGACTACATACAGATGTATATAGCCTA | 57.151 | 37.037 | 15.09 | 0.00 | 45.42 | 3.93 |
1615 | 1835 | 9.928618 | ACAGATGTATATAGCCTACATACAGAT | 57.071 | 33.333 | 8.67 | 0.00 | 39.34 | 2.90 |
1663 | 1904 | 6.945636 | TTAGAAATGGAGGGAGTACTTTCA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
1673 | 1914 | 4.042187 | AGGGAGTACTTTCAAAGCTCATGT | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
1677 | 1918 | 6.183360 | GGAGTACTTTCAAAGCTCATGTCATC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.92 |
1687 | 1928 | 4.285020 | AGCTCATGTCATCTCTGAGGTAA | 58.715 | 43.478 | 4.59 | 0.00 | 43.72 | 2.85 |
1693 | 1937 | 3.515502 | TGTCATCTCTGAGGTAAGGTTGG | 59.484 | 47.826 | 4.59 | 0.00 | 30.18 | 3.77 |
1697 | 1941 | 4.891992 | TCTCTGAGGTAAGGTTGGAAAG | 57.108 | 45.455 | 4.59 | 0.00 | 0.00 | 2.62 |
1698 | 1942 | 3.008049 | TCTCTGAGGTAAGGTTGGAAAGC | 59.992 | 47.826 | 4.59 | 0.00 | 46.62 | 3.51 |
1741 | 2133 | 6.591935 | AGACACTGTGGACTAAAGAAAATCA | 58.408 | 36.000 | 13.09 | 0.00 | 0.00 | 2.57 |
1794 | 2187 | 4.338400 | GTGGGTTATGGAAAATAGAGGCAC | 59.662 | 45.833 | 0.00 | 0.00 | 0.00 | 5.01 |
1797 | 2190 | 5.063880 | GGTTATGGAAAATAGAGGCACGAT | 58.936 | 41.667 | 0.00 | 0.00 | 0.00 | 3.73 |
1823 | 2264 | 1.777819 | GCGCTGCTATATCACGCTG | 59.222 | 57.895 | 0.00 | 1.78 | 45.71 | 5.18 |
1830 | 2271 | 4.032672 | GCTGCTATATCACGCTGATTGATC | 59.967 | 45.833 | 5.94 | 0.00 | 38.26 | 2.92 |
1835 | 2276 | 6.813649 | GCTATATCACGCTGATTGATCCTAAA | 59.186 | 38.462 | 5.94 | 0.00 | 38.26 | 1.85 |
1837 | 2278 | 4.200838 | TCACGCTGATTGATCCTAAACA | 57.799 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
1847 | 2291 | 9.330063 | CTGATTGATCCTAAACAGTTTAGCATA | 57.670 | 33.333 | 23.01 | 13.16 | 40.96 | 3.14 |
1854 | 2298 | 7.863722 | TCCTAAACAGTTTAGCATAATACCCA | 58.136 | 34.615 | 23.01 | 0.00 | 40.96 | 4.51 |
1876 | 2320 | 8.051535 | ACCCATCTAAATGATATAATGCAGAGG | 58.948 | 37.037 | 0.00 | 0.00 | 34.61 | 3.69 |
1881 | 2325 | 8.260818 | TCTAAATGATATAATGCAGAGGTAGCC | 58.739 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
1883 | 2327 | 4.167319 | TGATATAATGCAGAGGTAGCCCA | 58.833 | 43.478 | 0.00 | 0.00 | 0.00 | 5.36 |
1919 | 3619 | 8.358148 | ACTATAGTTTTACACGAGATGGTATGG | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1948 | 3648 | 6.875948 | AAATTTTTGTTGGAATAAGCCACC | 57.124 | 33.333 | 0.00 | 0.00 | 37.75 | 4.61 |
2111 | 5436 | 1.153549 | TGTGTGTAGTGTGTGCGCA | 60.154 | 52.632 | 5.66 | 5.66 | 0.00 | 6.09 |
2318 | 7465 | 1.450134 | TCGTGGGCATGCAGATCAC | 60.450 | 57.895 | 21.36 | 18.70 | 0.00 | 3.06 |
2370 | 7519 | 1.437160 | CTGCGTTTGTTGCCAAGGT | 59.563 | 52.632 | 0.00 | 0.00 | 0.00 | 3.50 |
2459 | 7609 | 5.302360 | GGTGAAACTCCAGTGTATTGTGTA | 58.698 | 41.667 | 0.00 | 0.00 | 36.74 | 2.90 |
2460 | 7610 | 5.408604 | GGTGAAACTCCAGTGTATTGTGTAG | 59.591 | 44.000 | 0.00 | 0.00 | 36.74 | 2.74 |
2461 | 7611 | 5.989777 | GTGAAACTCCAGTGTATTGTGTAGT | 59.010 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2462 | 7612 | 5.989168 | TGAAACTCCAGTGTATTGTGTAGTG | 59.011 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2463 | 7613 | 5.546621 | AACTCCAGTGTATTGTGTAGTGT | 57.453 | 39.130 | 0.00 | 0.00 | 0.00 | 3.55 |
2464 | 7614 | 6.659745 | AACTCCAGTGTATTGTGTAGTGTA | 57.340 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
2465 | 7615 | 6.852420 | ACTCCAGTGTATTGTGTAGTGTAT | 57.148 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2466 | 7616 | 7.241042 | ACTCCAGTGTATTGTGTAGTGTATT | 57.759 | 36.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2467 | 7617 | 7.097192 | ACTCCAGTGTATTGTGTAGTGTATTG | 58.903 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2468 | 7618 | 6.999950 | TCCAGTGTATTGTGTAGTGTATTGT | 58.000 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2469 | 7619 | 6.871492 | TCCAGTGTATTGTGTAGTGTATTGTG | 59.129 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
2470 | 7620 | 6.649141 | CCAGTGTATTGTGTAGTGTATTGTGT | 59.351 | 38.462 | 0.00 | 0.00 | 0.00 | 3.72 |
2477 | 7627 | 4.202315 | TGTGTAGTGTATTGTGTGCTCCTT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
2483 | 7633 | 4.757149 | GTGTATTGTGTGCTCCTTCTTCTT | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2485 | 7635 | 5.827797 | TGTATTGTGTGCTCCTTCTTCTTTT | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
2486 | 7636 | 6.995686 | TGTATTGTGTGCTCCTTCTTCTTTTA | 59.004 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
2487 | 7637 | 5.751243 | TTGTGTGCTCCTTCTTCTTTTAC | 57.249 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
2488 | 7638 | 4.134563 | TGTGTGCTCCTTCTTCTTTTACC | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
2489 | 7639 | 4.141482 | TGTGTGCTCCTTCTTCTTTTACCT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
2490 | 7640 | 4.452795 | GTGTGCTCCTTCTTCTTTTACCTC | 59.547 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
2491 | 7641 | 4.004314 | GTGCTCCTTCTTCTTTTACCTCC | 58.996 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2500 | 7650 | 4.788075 | TCTTCTTTTACCTCCATCCATCCA | 59.212 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2512 | 7662 | 1.870064 | TCCATCCATGTGAGAGAGCA | 58.130 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2516 | 7666 | 3.607741 | CATCCATGTGAGAGAGCAGTTT | 58.392 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2574 | 7724 | 4.556942 | AATCGTGTGCATCACCATAATG | 57.443 | 40.909 | 11.99 | 0.73 | 43.51 | 1.90 |
2577 | 7727 | 2.032054 | CGTGTGCATCACCATAATGACC | 59.968 | 50.000 | 11.99 | 0.00 | 43.51 | 4.02 |
2641 | 8096 | 4.201950 | GCTATCAGCCAACGAAATCATGTT | 60.202 | 41.667 | 0.00 | 0.00 | 34.48 | 2.71 |
2732 | 8192 | 1.985159 | ACAATGACCCAACTAGGCAGA | 59.015 | 47.619 | 0.00 | 0.00 | 35.39 | 4.26 |
2736 | 8423 | 0.250513 | GACCCAACTAGGCAGACTGG | 59.749 | 60.000 | 4.26 | 0.00 | 35.39 | 4.00 |
2737 | 8424 | 0.178903 | ACCCAACTAGGCAGACTGGA | 60.179 | 55.000 | 4.26 | 0.00 | 32.96 | 3.86 |
2758 | 8445 | 1.881973 | GATGTGGCGGCATCATACATT | 59.118 | 47.619 | 17.19 | 0.00 | 43.38 | 2.71 |
2790 | 8480 | 0.248949 | GAACGGGTCGATGAGCTACC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2800 | 8490 | 3.006430 | TCGATGAGCTACCACACAAGAAA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2878 | 8576 | 1.522355 | CACCGCTACCATGAGCAGG | 60.522 | 63.158 | 7.14 | 10.24 | 42.99 | 4.85 |
2903 | 8601 | 1.076727 | GGGTCACCAAAAGGAGGGG | 59.923 | 63.158 | 0.00 | 0.00 | 36.50 | 4.79 |
2908 | 8606 | 3.239449 | GTCACCAAAAGGAGGGGAAAAT | 58.761 | 45.455 | 0.00 | 0.00 | 41.00 | 1.82 |
2915 | 8613 | 3.923273 | AAGGAGGGGAAAATTTGGAGT | 57.077 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
2931 | 8629 | 0.528684 | GAGTCATCGCCACTGGTAGC | 60.529 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2951 | 8649 | 0.955428 | GGAAGTGCGGCAATCTGACA | 60.955 | 55.000 | 3.23 | 0.00 | 0.00 | 3.58 |
2952 | 8650 | 1.089920 | GAAGTGCGGCAATCTGACAT | 58.910 | 50.000 | 3.23 | 0.00 | 0.00 | 3.06 |
3105 | 8803 | 0.828022 | TGCACTATACACTTCCGGGG | 59.172 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
3139 | 9165 | 2.854777 | TGCAAAAACGTAATGTGCACAC | 59.145 | 40.909 | 24.37 | 8.94 | 40.14 | 3.82 |
3154 | 9181 | 3.929610 | GTGCACACTGAGTCCTAGAATTC | 59.070 | 47.826 | 13.17 | 0.00 | 0.00 | 2.17 |
3163 | 9190 | 4.081642 | TGAGTCCTAGAATTCAGGTTTCGG | 60.082 | 45.833 | 17.92 | 1.27 | 34.56 | 4.30 |
3174 | 9201 | 6.976934 | ATTCAGGTTTCGGCCAATAATTAT | 57.023 | 33.333 | 2.24 | 0.00 | 0.00 | 1.28 |
3179 | 9206 | 8.356657 | TCAGGTTTCGGCCAATAATTATTTATG | 58.643 | 33.333 | 8.01 | 0.00 | 0.00 | 1.90 |
3339 | 9373 | 2.624838 | GGTTCATACTTATCGGACGGGA | 59.375 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3431 | 10354 | 1.045407 | TAAGAGTGTCCCTGTGCGTT | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
3450 | 10378 | 3.614588 | GTTTGTGAAACTGCGGAACTAC | 58.385 | 45.455 | 0.00 | 0.00 | 38.35 | 2.73 |
3511 | 14770 | 7.294584 | TGATAGAAAGAAACAAAAGAAGGGGA | 58.705 | 34.615 | 0.00 | 0.00 | 0.00 | 4.81 |
3536 | 14832 | 3.766051 | AGCTAGCCCAGAAATTTGGAAAG | 59.234 | 43.478 | 12.13 | 0.00 | 40.87 | 2.62 |
3562 | 14861 | 3.180891 | TGGATGTACACAACGTGACAA | 57.819 | 42.857 | 0.00 | 0.00 | 36.96 | 3.18 |
3564 | 14863 | 3.558006 | TGGATGTACACAACGTGACAAAG | 59.442 | 43.478 | 0.00 | 0.00 | 36.96 | 2.77 |
3566 | 14865 | 4.451096 | GGATGTACACAACGTGACAAAGAT | 59.549 | 41.667 | 0.00 | 0.00 | 36.96 | 2.40 |
3769 | 15111 | 5.357742 | TCAGCACTAGAATTGGCATAGAA | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
3796 | 15138 | 1.346722 | AGAATTTCCGAACGACTGGGT | 59.653 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
3800 | 15142 | 2.280524 | CCGAACGACTGGGTGCAA | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 4.08 |
3808 | 15150 | 1.032014 | GACTGGGTGCAATTGTGTGT | 58.968 | 50.000 | 7.40 | 0.00 | 0.00 | 3.72 |
3809 | 15151 | 2.226330 | GACTGGGTGCAATTGTGTGTA | 58.774 | 47.619 | 7.40 | 0.00 | 0.00 | 2.90 |
3810 | 15152 | 2.621055 | GACTGGGTGCAATTGTGTGTAA | 59.379 | 45.455 | 7.40 | 0.00 | 0.00 | 2.41 |
3811 | 15153 | 3.027412 | ACTGGGTGCAATTGTGTGTAAA | 58.973 | 40.909 | 7.40 | 0.00 | 0.00 | 2.01 |
3812 | 15154 | 3.449018 | ACTGGGTGCAATTGTGTGTAAAA | 59.551 | 39.130 | 7.40 | 0.00 | 0.00 | 1.52 |
3813 | 15155 | 4.081420 | ACTGGGTGCAATTGTGTGTAAAAA | 60.081 | 37.500 | 7.40 | 0.00 | 0.00 | 1.94 |
3814 | 15156 | 4.437239 | TGGGTGCAATTGTGTGTAAAAAG | 58.563 | 39.130 | 7.40 | 0.00 | 0.00 | 2.27 |
3815 | 15157 | 4.160439 | TGGGTGCAATTGTGTGTAAAAAGA | 59.840 | 37.500 | 7.40 | 0.00 | 0.00 | 2.52 |
3816 | 15158 | 5.112686 | GGGTGCAATTGTGTGTAAAAAGAA | 58.887 | 37.500 | 7.40 | 0.00 | 0.00 | 2.52 |
3817 | 15159 | 5.582665 | GGGTGCAATTGTGTGTAAAAAGAAA | 59.417 | 36.000 | 7.40 | 0.00 | 0.00 | 2.52 |
3818 | 15160 | 6.092807 | GGGTGCAATTGTGTGTAAAAAGAAAA | 59.907 | 34.615 | 7.40 | 0.00 | 0.00 | 2.29 |
3819 | 15161 | 7.361286 | GGGTGCAATTGTGTGTAAAAAGAAAAA | 60.361 | 33.333 | 7.40 | 0.00 | 0.00 | 1.94 |
3852 | 15194 | 9.640974 | CTTAACCGTATAAATAAACAATCCACG | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 4.94 |
3853 | 15195 | 7.846644 | AACCGTATAAATAAACAATCCACGA | 57.153 | 32.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3854 | 15196 | 7.846644 | ACCGTATAAATAAACAATCCACGAA | 57.153 | 32.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3855 | 15197 | 8.441312 | ACCGTATAAATAAACAATCCACGAAT | 57.559 | 30.769 | 0.00 | 0.00 | 0.00 | 3.34 |
3856 | 15198 | 8.553696 | ACCGTATAAATAAACAATCCACGAATC | 58.446 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3857 | 15199 | 8.013378 | CCGTATAAATAAACAATCCACGAATCC | 58.987 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
3858 | 15200 | 8.770828 | CGTATAAATAAACAATCCACGAATCCT | 58.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
3861 | 15203 | 7.931578 | AAATAAACAATCCACGAATCCTACA | 57.068 | 32.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3862 | 15204 | 7.553881 | AATAAACAATCCACGAATCCTACAG | 57.446 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3863 | 15205 | 3.543680 | ACAATCCACGAATCCTACAGG | 57.456 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3878 | 15220 | 6.248569 | TCCTACAGGATTAGGGATGAAAAC | 57.751 | 41.667 | 0.00 | 0.00 | 39.78 | 2.43 |
3879 | 15221 | 5.729229 | TCCTACAGGATTAGGGATGAAAACA | 59.271 | 40.000 | 0.00 | 0.00 | 39.78 | 2.83 |
3880 | 15222 | 5.823045 | CCTACAGGATTAGGGATGAAAACAC | 59.177 | 44.000 | 0.00 | 0.00 | 35.78 | 3.32 |
3881 | 15223 | 4.600062 | ACAGGATTAGGGATGAAAACACC | 58.400 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
3882 | 15224 | 4.292306 | ACAGGATTAGGGATGAAAACACCT | 59.708 | 41.667 | 0.00 | 0.00 | 37.13 | 4.00 |
3883 | 15225 | 5.222337 | ACAGGATTAGGGATGAAAACACCTT | 60.222 | 40.000 | 0.00 | 0.00 | 34.59 | 3.50 |
3884 | 15226 | 6.011981 | ACAGGATTAGGGATGAAAACACCTTA | 60.012 | 38.462 | 0.00 | 0.00 | 34.59 | 2.69 |
3885 | 15227 | 6.889722 | CAGGATTAGGGATGAAAACACCTTAA | 59.110 | 38.462 | 0.00 | 0.00 | 34.59 | 1.85 |
3886 | 15228 | 7.396055 | CAGGATTAGGGATGAAAACACCTTAAA | 59.604 | 37.037 | 0.00 | 0.00 | 34.59 | 1.52 |
3887 | 15229 | 8.122481 | AGGATTAGGGATGAAAACACCTTAAAT | 58.878 | 33.333 | 0.00 | 0.00 | 34.59 | 1.40 |
3888 | 15230 | 9.416284 | GGATTAGGGATGAAAACACCTTAAATA | 57.584 | 33.333 | 0.00 | 0.00 | 34.59 | 1.40 |
3890 | 15232 | 6.775594 | AGGGATGAAAACACCTTAAATAGC | 57.224 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
3891 | 15233 | 6.494059 | AGGGATGAAAACACCTTAAATAGCT | 58.506 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3892 | 15234 | 7.639378 | AGGGATGAAAACACCTTAAATAGCTA | 58.361 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
3893 | 15235 | 7.556635 | AGGGATGAAAACACCTTAAATAGCTAC | 59.443 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
3894 | 15236 | 7.556635 | GGGATGAAAACACCTTAAATAGCTACT | 59.443 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3895 | 15237 | 8.613482 | GGATGAAAACACCTTAAATAGCTACTC | 58.387 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
3896 | 15238 | 7.916914 | TGAAAACACCTTAAATAGCTACTCC | 57.083 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3897 | 15239 | 6.882678 | TGAAAACACCTTAAATAGCTACTCCC | 59.117 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
3898 | 15240 | 6.638021 | AAACACCTTAAATAGCTACTCCCT | 57.362 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
3899 | 15241 | 5.873146 | ACACCTTAAATAGCTACTCCCTC | 57.127 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3900 | 15242 | 5.530243 | ACACCTTAAATAGCTACTCCCTCT | 58.470 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3901 | 15243 | 5.364157 | ACACCTTAAATAGCTACTCCCTCTG | 59.636 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3902 | 15244 | 5.364157 | CACCTTAAATAGCTACTCCCTCTGT | 59.636 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3903 | 15245 | 5.965091 | ACCTTAAATAGCTACTCCCTCTGTT | 59.035 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3904 | 15246 | 6.444171 | ACCTTAAATAGCTACTCCCTCTGTTT | 59.556 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
3905 | 15247 | 6.987404 | CCTTAAATAGCTACTCCCTCTGTTTC | 59.013 | 42.308 | 0.00 | 0.00 | 0.00 | 2.78 |
3906 | 15248 | 7.364762 | CCTTAAATAGCTACTCCCTCTGTTTCA | 60.365 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
3907 | 15249 | 6.374417 | AAATAGCTACTCCCTCTGTTTCAA | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3908 | 15250 | 6.374417 | AATAGCTACTCCCTCTGTTTCAAA | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3909 | 15251 | 4.706842 | AGCTACTCCCTCTGTTTCAAAA | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3910 | 15252 | 5.248380 | AGCTACTCCCTCTGTTTCAAAAT | 57.752 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3911 | 15253 | 6.374417 | AGCTACTCCCTCTGTTTCAAAATA | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3912 | 15254 | 6.963322 | AGCTACTCCCTCTGTTTCAAAATAT | 58.037 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3913 | 15255 | 8.090788 | AGCTACTCCCTCTGTTTCAAAATATA | 57.909 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
3914 | 15256 | 8.207545 | AGCTACTCCCTCTGTTTCAAAATATAG | 58.792 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
3915 | 15257 | 7.988028 | GCTACTCCCTCTGTTTCAAAATATAGT | 59.012 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
3916 | 15258 | 9.319143 | CTACTCCCTCTGTTTCAAAATATAGTG | 57.681 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3917 | 15259 | 7.690256 | ACTCCCTCTGTTTCAAAATATAGTGT | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
3918 | 15260 | 7.607991 | ACTCCCTCTGTTTCAAAATATAGTGTG | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 3.82 |
3919 | 15261 | 6.374333 | TCCCTCTGTTTCAAAATATAGTGTGC | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 4.57 |
3920 | 15262 | 6.404734 | CCCTCTGTTTCAAAATATAGTGTGCC | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 5.01 |
3921 | 15263 | 6.404734 | CCTCTGTTTCAAAATATAGTGTGCCC | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 5.36 |
3922 | 15264 | 6.007076 | TCTGTTTCAAAATATAGTGTGCCCA | 58.993 | 36.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3923 | 15265 | 6.019779 | TGTTTCAAAATATAGTGTGCCCAC | 57.980 | 37.500 | 0.00 | 0.00 | 42.17 | 4.61 |
3924 | 15266 | 4.955925 | TTCAAAATATAGTGTGCCCACG | 57.044 | 40.909 | 0.00 | 0.00 | 46.56 | 4.94 |
3925 | 15267 | 2.680841 | TCAAAATATAGTGTGCCCACGC | 59.319 | 45.455 | 3.88 | 3.88 | 46.56 | 5.34 |
3931 | 15273 | 2.051345 | GTGTGCCCACGCTTTTCG | 60.051 | 61.111 | 4.81 | 0.00 | 45.38 | 3.46 |
3932 | 15274 | 2.203084 | TGTGCCCACGCTTTTCGA | 60.203 | 55.556 | 0.00 | 0.00 | 41.67 | 3.71 |
3933 | 15275 | 2.250939 | TGTGCCCACGCTTTTCGAG | 61.251 | 57.895 | 0.00 | 0.00 | 41.67 | 4.04 |
3934 | 15276 | 2.668212 | TGCCCACGCTTTTCGAGG | 60.668 | 61.111 | 0.00 | 0.00 | 46.50 | 4.63 |
3935 | 15277 | 2.668550 | GCCCACGCTTTTCGAGGT | 60.669 | 61.111 | 0.71 | 0.00 | 45.67 | 3.85 |
3936 | 15278 | 2.258726 | GCCCACGCTTTTCGAGGTT | 61.259 | 57.895 | 0.71 | 0.00 | 45.67 | 3.50 |
3937 | 15279 | 1.866925 | CCCACGCTTTTCGAGGTTC | 59.133 | 57.895 | 0.71 | 0.00 | 45.67 | 3.62 |
3938 | 15280 | 0.882927 | CCCACGCTTTTCGAGGTTCA | 60.883 | 55.000 | 0.71 | 0.00 | 45.67 | 3.18 |
3939 | 15281 | 0.941542 | CCACGCTTTTCGAGGTTCAA | 59.058 | 50.000 | 0.00 | 0.00 | 42.79 | 2.69 |
3940 | 15282 | 1.333791 | CCACGCTTTTCGAGGTTCAAC | 60.334 | 52.381 | 0.00 | 0.00 | 42.79 | 3.18 |
3941 | 15283 | 1.597663 | CACGCTTTTCGAGGTTCAACT | 59.402 | 47.619 | 0.00 | 0.00 | 41.67 | 3.16 |
3942 | 15284 | 2.031683 | CACGCTTTTCGAGGTTCAACTT | 59.968 | 45.455 | 0.00 | 0.00 | 41.67 | 2.66 |
3943 | 15285 | 2.681344 | ACGCTTTTCGAGGTTCAACTTT | 59.319 | 40.909 | 0.00 | 0.00 | 41.67 | 2.66 |
3944 | 15286 | 3.035942 | CGCTTTTCGAGGTTCAACTTTG | 58.964 | 45.455 | 0.00 | 0.00 | 41.67 | 2.77 |
3945 | 15287 | 3.242608 | CGCTTTTCGAGGTTCAACTTTGA | 60.243 | 43.478 | 0.00 | 0.00 | 41.67 | 2.69 |
3946 | 15288 | 4.035684 | GCTTTTCGAGGTTCAACTTTGAC | 58.964 | 43.478 | 0.00 | 0.00 | 36.83 | 3.18 |
3947 | 15289 | 4.598062 | CTTTTCGAGGTTCAACTTTGACC | 58.402 | 43.478 | 0.00 | 0.00 | 36.83 | 4.02 |
3948 | 15290 | 2.992124 | TCGAGGTTCAACTTTGACCA | 57.008 | 45.000 | 11.01 | 0.00 | 36.83 | 4.02 |
3949 | 15291 | 3.485463 | TCGAGGTTCAACTTTGACCAT | 57.515 | 42.857 | 11.01 | 0.00 | 36.83 | 3.55 |
3950 | 15292 | 4.610605 | TCGAGGTTCAACTTTGACCATA | 57.389 | 40.909 | 11.01 | 0.00 | 36.83 | 2.74 |
3951 | 15293 | 4.963373 | TCGAGGTTCAACTTTGACCATAA | 58.037 | 39.130 | 11.01 | 0.00 | 36.83 | 1.90 |
3952 | 15294 | 5.369833 | TCGAGGTTCAACTTTGACCATAAA | 58.630 | 37.500 | 11.01 | 0.00 | 36.83 | 1.40 |
3953 | 15295 | 6.001460 | TCGAGGTTCAACTTTGACCATAAAT | 58.999 | 36.000 | 11.01 | 0.00 | 36.83 | 1.40 |
3954 | 15296 | 6.488683 | TCGAGGTTCAACTTTGACCATAAATT | 59.511 | 34.615 | 11.01 | 0.00 | 36.83 | 1.82 |
3955 | 15297 | 7.013846 | TCGAGGTTCAACTTTGACCATAAATTT | 59.986 | 33.333 | 0.00 | 0.00 | 36.83 | 1.82 |
3956 | 15298 | 7.114811 | CGAGGTTCAACTTTGACCATAAATTTG | 59.885 | 37.037 | 0.00 | 0.00 | 36.83 | 2.32 |
3957 | 15299 | 8.017418 | AGGTTCAACTTTGACCATAAATTTGA | 57.983 | 30.769 | 0.00 | 0.00 | 37.40 | 2.69 |
3958 | 15300 | 7.926018 | AGGTTCAACTTTGACCATAAATTTGAC | 59.074 | 33.333 | 0.00 | 0.00 | 38.27 | 3.18 |
3959 | 15301 | 7.170828 | GGTTCAACTTTGACCATAAATTTGACC | 59.829 | 37.037 | 0.00 | 0.00 | 38.27 | 4.02 |
3960 | 15302 | 7.353414 | TCAACTTTGACCATAAATTTGACCA | 57.647 | 32.000 | 0.00 | 0.00 | 35.58 | 4.02 |
3961 | 15303 | 7.786030 | TCAACTTTGACCATAAATTTGACCAA | 58.214 | 30.769 | 0.00 | 0.00 | 35.58 | 3.67 |
3962 | 15304 | 7.708752 | TCAACTTTGACCATAAATTTGACCAAC | 59.291 | 33.333 | 0.00 | 0.00 | 35.58 | 3.77 |
3963 | 15305 | 6.212955 | ACTTTGACCATAAATTTGACCAACG | 58.787 | 36.000 | 0.00 | 0.00 | 0.00 | 4.10 |
3964 | 15306 | 6.039941 | ACTTTGACCATAAATTTGACCAACGA | 59.960 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
3965 | 15307 | 5.621197 | TGACCATAAATTTGACCAACGAG | 57.379 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
3966 | 15308 | 5.309638 | TGACCATAAATTTGACCAACGAGA | 58.690 | 37.500 | 0.00 | 0.00 | 0.00 | 4.04 |
3967 | 15309 | 5.180492 | TGACCATAAATTTGACCAACGAGAC | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3968 | 15310 | 4.457949 | ACCATAAATTTGACCAACGAGACC | 59.542 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3969 | 15311 | 4.436852 | CCATAAATTTGACCAACGAGACCG | 60.437 | 45.833 | 0.00 | 0.00 | 42.50 | 4.79 |
3970 | 15312 | 2.536761 | AATTTGACCAACGAGACCGA | 57.463 | 45.000 | 0.00 | 0.00 | 39.50 | 4.69 |
3971 | 15313 | 2.536761 | ATTTGACCAACGAGACCGAA | 57.463 | 45.000 | 0.00 | 0.00 | 39.50 | 4.30 |
3972 | 15314 | 2.536761 | TTTGACCAACGAGACCGAAT | 57.463 | 45.000 | 0.00 | 0.00 | 39.50 | 3.34 |
3973 | 15315 | 1.790755 | TTGACCAACGAGACCGAATG | 58.209 | 50.000 | 0.00 | 0.00 | 39.50 | 2.67 |
3974 | 15316 | 0.677288 | TGACCAACGAGACCGAATGT | 59.323 | 50.000 | 0.00 | 0.00 | 39.50 | 2.71 |
3975 | 15317 | 1.068474 | GACCAACGAGACCGAATGTG | 58.932 | 55.000 | 0.00 | 0.00 | 39.50 | 3.21 |
3976 | 15318 | 0.320421 | ACCAACGAGACCGAATGTGG | 60.320 | 55.000 | 0.00 | 0.00 | 39.50 | 4.17 |
3977 | 15319 | 1.635663 | CCAACGAGACCGAATGTGGC | 61.636 | 60.000 | 0.00 | 0.00 | 39.50 | 5.01 |
3978 | 15320 | 1.736645 | AACGAGACCGAATGTGGCG | 60.737 | 57.895 | 0.00 | 0.00 | 39.50 | 5.69 |
4002 | 15344 | 8.627487 | CGGAAGCAAAAATTATATAAGTGCAA | 57.373 | 30.769 | 18.08 | 0.00 | 32.98 | 4.08 |
4003 | 15345 | 9.081997 | CGGAAGCAAAAATTATATAAGTGCAAA | 57.918 | 29.630 | 18.08 | 0.00 | 32.98 | 3.68 |
4018 | 15360 | 8.728088 | ATAAGTGCAAACTTCTTTTGAATACG | 57.272 | 30.769 | 0.91 | 0.00 | 46.76 | 3.06 |
4019 | 15361 | 6.371809 | AGTGCAAACTTCTTTTGAATACGA | 57.628 | 33.333 | 0.91 | 0.00 | 46.76 | 3.43 |
4020 | 15362 | 6.791303 | AGTGCAAACTTCTTTTGAATACGAA | 58.209 | 32.000 | 0.91 | 0.00 | 46.76 | 3.85 |
4021 | 15363 | 7.425606 | AGTGCAAACTTCTTTTGAATACGAAT | 58.574 | 30.769 | 0.91 | 0.00 | 46.76 | 3.34 |
4022 | 15364 | 7.920682 | AGTGCAAACTTCTTTTGAATACGAATT | 59.079 | 29.630 | 0.91 | 0.00 | 46.76 | 2.17 |
4023 | 15365 | 8.207906 | GTGCAAACTTCTTTTGAATACGAATTC | 58.792 | 33.333 | 0.00 | 0.00 | 46.76 | 2.17 |
4024 | 15366 | 7.918033 | TGCAAACTTCTTTTGAATACGAATTCA | 59.082 | 29.630 | 6.22 | 0.00 | 46.76 | 2.57 |
4043 | 15385 | 8.507470 | GAATTCATCGGTATAATTTTTGCTCC | 57.493 | 34.615 | 0.00 | 0.00 | 0.00 | 4.70 |
4044 | 15386 | 7.823745 | ATTCATCGGTATAATTTTTGCTCCT | 57.176 | 32.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4045 | 15387 | 6.618287 | TCATCGGTATAATTTTTGCTCCTG | 57.382 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
4046 | 15388 | 4.893424 | TCGGTATAATTTTTGCTCCTGC | 57.107 | 40.909 | 0.00 | 0.00 | 40.20 | 4.85 |
4047 | 15389 | 3.630312 | TCGGTATAATTTTTGCTCCTGCC | 59.370 | 43.478 | 0.00 | 0.00 | 38.71 | 4.85 |
4048 | 15390 | 3.548014 | CGGTATAATTTTTGCTCCTGCCG | 60.548 | 47.826 | 0.00 | 0.00 | 38.71 | 5.69 |
4049 | 15391 | 2.584492 | ATAATTTTTGCTCCTGCCGC | 57.416 | 45.000 | 0.00 | 0.00 | 38.71 | 6.53 |
4050 | 15392 | 1.252175 | TAATTTTTGCTCCTGCCGCA | 58.748 | 45.000 | 0.00 | 0.00 | 38.71 | 5.69 |
4051 | 15393 | 0.392336 | AATTTTTGCTCCTGCCGCAA | 59.608 | 45.000 | 0.00 | 0.00 | 44.83 | 4.85 |
4052 | 15394 | 0.609662 | ATTTTTGCTCCTGCCGCAAT | 59.390 | 45.000 | 0.00 | 0.00 | 45.67 | 3.56 |
4053 | 15395 | 0.038343 | TTTTTGCTCCTGCCGCAATC | 60.038 | 50.000 | 0.00 | 0.00 | 45.67 | 2.67 |
4054 | 15396 | 2.198906 | TTTTGCTCCTGCCGCAATCG | 62.199 | 55.000 | 0.00 | 0.00 | 45.67 | 3.34 |
4065 | 15407 | 2.767536 | CGCAATCGGTCTCATTGGT | 58.232 | 52.632 | 0.00 | 0.00 | 32.66 | 3.67 |
4066 | 15408 | 1.086696 | CGCAATCGGTCTCATTGGTT | 58.913 | 50.000 | 0.00 | 0.00 | 32.66 | 3.67 |
4067 | 15409 | 2.276201 | CGCAATCGGTCTCATTGGTTA | 58.724 | 47.619 | 0.00 | 0.00 | 32.66 | 2.85 |
4068 | 15410 | 2.675844 | CGCAATCGGTCTCATTGGTTAA | 59.324 | 45.455 | 0.00 | 0.00 | 32.66 | 2.01 |
4069 | 15411 | 3.126171 | CGCAATCGGTCTCATTGGTTAAA | 59.874 | 43.478 | 0.00 | 0.00 | 32.66 | 1.52 |
4070 | 15412 | 4.201910 | CGCAATCGGTCTCATTGGTTAAAT | 60.202 | 41.667 | 0.00 | 0.00 | 32.66 | 1.40 |
4071 | 15413 | 5.650543 | GCAATCGGTCTCATTGGTTAAATT | 58.349 | 37.500 | 0.00 | 0.00 | 32.66 | 1.82 |
4072 | 15414 | 6.099341 | GCAATCGGTCTCATTGGTTAAATTT | 58.901 | 36.000 | 0.00 | 0.00 | 32.66 | 1.82 |
4073 | 15415 | 7.254852 | GCAATCGGTCTCATTGGTTAAATTTA | 58.745 | 34.615 | 0.00 | 0.00 | 32.66 | 1.40 |
4074 | 15416 | 7.920682 | GCAATCGGTCTCATTGGTTAAATTTAT | 59.079 | 33.333 | 0.00 | 0.00 | 32.66 | 1.40 |
4075 | 15417 | 9.236691 | CAATCGGTCTCATTGGTTAAATTTATG | 57.763 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
4076 | 15418 | 7.328277 | TCGGTCTCATTGGTTAAATTTATGG | 57.672 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4077 | 15419 | 6.887545 | TCGGTCTCATTGGTTAAATTTATGGT | 59.112 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
4078 | 15420 | 7.066525 | TCGGTCTCATTGGTTAAATTTATGGTC | 59.933 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
4079 | 15421 | 7.148154 | CGGTCTCATTGGTTAAATTTATGGTCA | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
4080 | 15422 | 8.527810 | GGTCTCATTGGTTAAATTTATGGTCAA | 58.472 | 33.333 | 0.00 | 2.87 | 0.00 | 3.18 |
4081 | 15423 | 9.921637 | GTCTCATTGGTTAAATTTATGGTCAAA | 57.078 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4083 | 15425 | 9.927668 | CTCATTGGTTAAATTTATGGTCAAAGT | 57.072 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
4092 | 15434 | 7.867445 | AATTTATGGTCAAAGTTAAAGCACG | 57.133 | 32.000 | 0.00 | 0.00 | 0.00 | 5.34 |
4093 | 15435 | 3.915437 | ATGGTCAAAGTTAAAGCACGG | 57.085 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
4094 | 15436 | 2.920524 | TGGTCAAAGTTAAAGCACGGA | 58.079 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
4095 | 15437 | 2.875933 | TGGTCAAAGTTAAAGCACGGAG | 59.124 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
4096 | 15438 | 2.225727 | GGTCAAAGTTAAAGCACGGAGG | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4097 | 15439 | 3.135994 | GTCAAAGTTAAAGCACGGAGGA | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
4098 | 15440 | 3.059120 | GTCAAAGTTAAAGCACGGAGGAC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
4099 | 15441 | 2.875933 | CAAAGTTAAAGCACGGAGGACA | 59.124 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4100 | 15442 | 2.165319 | AGTTAAAGCACGGAGGACAC | 57.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4101 | 15443 | 1.414919 | AGTTAAAGCACGGAGGACACA | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
4102 | 15444 | 2.158871 | AGTTAAAGCACGGAGGACACAA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
4103 | 15445 | 1.873698 | TAAAGCACGGAGGACACAAC | 58.126 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4104 | 15446 | 0.107410 | AAAGCACGGAGGACACAACA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4105 | 15447 | 0.107410 | AAGCACGGAGGACACAACAA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4106 | 15448 | 0.532862 | AGCACGGAGGACACAACAAG | 60.533 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4107 | 15449 | 0.531974 | GCACGGAGGACACAACAAGA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
4108 | 15450 | 1.878102 | GCACGGAGGACACAACAAGAT | 60.878 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
4109 | 15451 | 2.069273 | CACGGAGGACACAACAAGATC | 58.931 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
4110 | 15452 | 1.691976 | ACGGAGGACACAACAAGATCA | 59.308 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
4111 | 15453 | 2.104111 | ACGGAGGACACAACAAGATCAA | 59.896 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
4112 | 15454 | 3.244561 | ACGGAGGACACAACAAGATCAAT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
4113 | 15455 | 3.125829 | CGGAGGACACAACAAGATCAATG | 59.874 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
4114 | 15456 | 4.074970 | GGAGGACACAACAAGATCAATGT | 58.925 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
4115 | 15457 | 5.245531 | GGAGGACACAACAAGATCAATGTA | 58.754 | 41.667 | 4.79 | 0.00 | 0.00 | 2.29 |
4116 | 15458 | 5.882557 | GGAGGACACAACAAGATCAATGTAT | 59.117 | 40.000 | 4.79 | 0.00 | 0.00 | 2.29 |
4117 | 15459 | 6.183360 | GGAGGACACAACAAGATCAATGTATG | 60.183 | 42.308 | 4.79 | 8.67 | 0.00 | 2.39 |
4118 | 15460 | 6.475504 | AGGACACAACAAGATCAATGTATGA | 58.524 | 36.000 | 16.31 | 0.00 | 43.67 | 2.15 |
4119 | 15461 | 6.942005 | AGGACACAACAAGATCAATGTATGAA | 59.058 | 34.615 | 16.31 | 0.00 | 42.54 | 2.57 |
4120 | 15462 | 7.448161 | AGGACACAACAAGATCAATGTATGAAA | 59.552 | 33.333 | 16.31 | 0.00 | 42.54 | 2.69 |
4121 | 15463 | 8.081633 | GGACACAACAAGATCAATGTATGAAAA | 58.918 | 33.333 | 16.31 | 0.00 | 42.54 | 2.29 |
4122 | 15464 | 9.462174 | GACACAACAAGATCAATGTATGAAAAA | 57.538 | 29.630 | 16.31 | 0.00 | 42.54 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 38 | 2.156098 | GGGCTGGATATGAGGGGCA | 61.156 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
146 | 191 | 2.261671 | GAAGGTGGCGAGCTTCGA | 59.738 | 61.111 | 22.13 | 0.00 | 44.52 | 3.71 |
156 | 201 | 4.430765 | CCGGTCCGACGAAGGTGG | 62.431 | 72.222 | 14.39 | 0.00 | 35.47 | 4.61 |
158 | 203 | 3.677648 | CACCGGTCCGACGAAGGT | 61.678 | 66.667 | 14.39 | 0.00 | 35.47 | 3.50 |
259 | 305 | 3.054139 | CAGGAGGAGGAAAATGTGGATGA | 60.054 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
305 | 363 | 3.834799 | CTAGGCGGACGGGTGGAC | 61.835 | 72.222 | 0.00 | 0.00 | 0.00 | 4.02 |
333 | 396 | 4.745751 | CTTACCCGGCGGCGTGAA | 62.746 | 66.667 | 30.09 | 18.37 | 0.00 | 3.18 |
348 | 411 | 2.592102 | TCAGAAATGGCTTGCTCCTT | 57.408 | 45.000 | 0.00 | 0.00 | 0.00 | 3.36 |
355 | 418 | 2.519771 | TCTGGCATCAGAAATGGCTT | 57.480 | 45.000 | 12.05 | 0.00 | 46.08 | 4.35 |
387 | 451 | 1.394618 | CCCGAATCTTCTCGAGGAGT | 58.605 | 55.000 | 20.32 | 5.98 | 41.44 | 3.85 |
393 | 457 | 0.319125 | GCCTAGCCCGAATCTTCTCG | 60.319 | 60.000 | 0.00 | 0.00 | 38.58 | 4.04 |
397 | 461 | 2.109181 | GCGCCTAGCCCGAATCTT | 59.891 | 61.111 | 0.00 | 0.00 | 40.81 | 2.40 |
451 | 516 | 1.157276 | CCTCCTCCTCCGGATCCAT | 59.843 | 63.158 | 13.41 | 0.00 | 31.43 | 3.41 |
480 | 548 | 0.811915 | CGTCCTCTTCCACGTCATCT | 59.188 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
483 | 557 | 1.241990 | CCTCGTCCTCTTCCACGTCA | 61.242 | 60.000 | 0.00 | 0.00 | 37.30 | 4.35 |
488 | 562 | 0.959372 | GTCGTCCTCGTCCTCTTCCA | 60.959 | 60.000 | 0.00 | 0.00 | 38.33 | 3.53 |
504 | 578 | 0.171455 | CCTCCTCCTCAAAGTCGTCG | 59.829 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
507 | 581 | 1.617947 | CCCCCTCCTCCTCAAAGTCG | 61.618 | 65.000 | 0.00 | 0.00 | 0.00 | 4.18 |
691 | 784 | 2.693069 | GCTCGACCTCATCCATATTGG | 58.307 | 52.381 | 0.00 | 0.00 | 39.43 | 3.16 |
692 | 785 | 2.332104 | CGCTCGACCTCATCCATATTG | 58.668 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
693 | 786 | 1.273606 | CCGCTCGACCTCATCCATATT | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 1.28 |
694 | 787 | 0.891373 | CCGCTCGACCTCATCCATAT | 59.109 | 55.000 | 0.00 | 0.00 | 0.00 | 1.78 |
695 | 788 | 1.179174 | CCCGCTCGACCTCATCCATA | 61.179 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
696 | 789 | 2.502492 | CCCGCTCGACCTCATCCAT | 61.502 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
697 | 790 | 3.147595 | CCCGCTCGACCTCATCCA | 61.148 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
700 | 793 | 2.835431 | CCTCCCGCTCGACCTCAT | 60.835 | 66.667 | 0.00 | 0.00 | 0.00 | 2.90 |
701 | 794 | 3.997400 | CTCCTCCCGCTCGACCTCA | 62.997 | 68.421 | 0.00 | 0.00 | 0.00 | 3.86 |
702 | 795 | 3.213402 | CTCCTCCCGCTCGACCTC | 61.213 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
703 | 796 | 4.824515 | CCTCCTCCCGCTCGACCT | 62.825 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
706 | 799 | 2.519541 | CATCCTCCTCCCGCTCGA | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
707 | 800 | 2.519541 | TCATCCTCCTCCCGCTCG | 60.520 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
709 | 802 | 2.841988 | GCTCATCCTCCTCCCGCT | 60.842 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
711 | 804 | 2.506061 | CCAGCTCATCCTCCTCCCG | 61.506 | 68.421 | 0.00 | 0.00 | 0.00 | 5.14 |
714 | 807 | 1.747774 | GCTCCAGCTCATCCTCCTC | 59.252 | 63.158 | 0.00 | 0.00 | 38.21 | 3.71 |
716 | 809 | 1.417288 | ATGGCTCCAGCTCATCCTCC | 61.417 | 60.000 | 0.00 | 0.00 | 41.70 | 4.30 |
718 | 811 | 2.144040 | GATGGCTCCAGCTCATCCT | 58.856 | 57.895 | 14.44 | 0.00 | 40.05 | 3.24 |
719 | 812 | 4.796314 | GATGGCTCCAGCTCATCC | 57.204 | 61.111 | 14.44 | 0.00 | 40.05 | 3.51 |
720 | 813 | 0.035176 | GAGGATGGCTCCAGCTCATC | 59.965 | 60.000 | 16.01 | 16.01 | 44.79 | 2.92 |
722 | 815 | 2.068821 | GGAGGATGGCTCCAGCTCA | 61.069 | 63.158 | 4.04 | 0.00 | 44.79 | 4.26 |
723 | 816 | 2.817056 | GGGAGGATGGCTCCAGCTC | 61.817 | 68.421 | 4.04 | 0.51 | 44.79 | 4.09 |
724 | 817 | 2.771762 | GGGAGGATGGCTCCAGCT | 60.772 | 66.667 | 4.04 | 0.00 | 44.79 | 4.24 |
725 | 818 | 3.883549 | GGGGAGGATGGCTCCAGC | 61.884 | 72.222 | 0.00 | 0.00 | 44.79 | 4.85 |
726 | 819 | 3.554342 | CGGGGAGGATGGCTCCAG | 61.554 | 72.222 | 0.00 | 0.00 | 44.79 | 3.86 |
744 | 837 | 1.532604 | TATAGGCTCGCATGGACGGG | 61.533 | 60.000 | 0.00 | 0.00 | 36.32 | 5.28 |
746 | 839 | 0.388649 | GGTATAGGCTCGCATGGACG | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
748 | 841 | 1.717032 | AAGGTATAGGCTCGCATGGA | 58.283 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
749 | 842 | 2.550830 | AAAGGTATAGGCTCGCATGG | 57.449 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
751 | 844 | 4.262506 | GGACTAAAAGGTATAGGCTCGCAT | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 4.73 |
754 | 847 | 3.305199 | CCGGACTAAAAGGTATAGGCTCG | 60.305 | 52.174 | 0.00 | 0.00 | 0.00 | 5.03 |
755 | 848 | 3.893813 | TCCGGACTAAAAGGTATAGGCTC | 59.106 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
757 | 850 | 3.244009 | GGTCCGGACTAAAAGGTATAGGC | 60.244 | 52.174 | 32.52 | 8.20 | 0.00 | 3.93 |
758 | 851 | 4.221530 | AGGTCCGGACTAAAAGGTATAGG | 58.778 | 47.826 | 32.52 | 0.00 | 0.00 | 2.57 |
759 | 852 | 5.128335 | ACAAGGTCCGGACTAAAAGGTATAG | 59.872 | 44.000 | 32.52 | 12.29 | 0.00 | 1.31 |
760 | 853 | 5.025453 | ACAAGGTCCGGACTAAAAGGTATA | 58.975 | 41.667 | 32.52 | 0.00 | 0.00 | 1.47 |
761 | 854 | 3.842436 | ACAAGGTCCGGACTAAAAGGTAT | 59.158 | 43.478 | 32.52 | 7.51 | 0.00 | 2.73 |
763 | 856 | 2.052468 | ACAAGGTCCGGACTAAAAGGT | 58.948 | 47.619 | 32.52 | 18.87 | 0.00 | 3.50 |
764 | 857 | 2.853235 | ACAAGGTCCGGACTAAAAGG | 57.147 | 50.000 | 32.52 | 18.28 | 0.00 | 3.11 |
767 | 860 | 2.048601 | TGGAACAAGGTCCGGACTAAA | 58.951 | 47.619 | 32.52 | 8.58 | 40.96 | 1.85 |
768 | 861 | 1.345415 | GTGGAACAAGGTCCGGACTAA | 59.655 | 52.381 | 32.52 | 8.06 | 44.16 | 2.24 |
769 | 862 | 0.971386 | GTGGAACAAGGTCCGGACTA | 59.029 | 55.000 | 32.52 | 0.71 | 44.16 | 2.59 |
770 | 863 | 0.763223 | AGTGGAACAAGGTCCGGACT | 60.763 | 55.000 | 32.52 | 16.77 | 44.16 | 3.85 |
771 | 864 | 0.971386 | TAGTGGAACAAGGTCCGGAC | 59.029 | 55.000 | 27.04 | 27.04 | 44.16 | 4.79 |
772 | 865 | 0.971386 | GTAGTGGAACAAGGTCCGGA | 59.029 | 55.000 | 0.00 | 0.00 | 44.16 | 5.14 |
773 | 866 | 0.036671 | GGTAGTGGAACAAGGTCCGG | 60.037 | 60.000 | 0.00 | 0.00 | 44.16 | 5.14 |
774 | 867 | 0.389426 | CGGTAGTGGAACAAGGTCCG | 60.389 | 60.000 | 0.00 | 0.00 | 44.16 | 4.79 |
775 | 868 | 0.683412 | ACGGTAGTGGAACAAGGTCC | 59.317 | 55.000 | 0.00 | 0.00 | 44.16 | 4.46 |
777 | 870 | 1.274447 | GCTACGGTAGTGGAACAAGGT | 59.726 | 52.381 | 16.05 | 0.00 | 44.16 | 3.50 |
779 | 872 | 2.736144 | TGCTACGGTAGTGGAACAAG | 57.264 | 50.000 | 16.05 | 0.00 | 44.16 | 3.16 |
780 | 873 | 2.300723 | ACATGCTACGGTAGTGGAACAA | 59.699 | 45.455 | 16.05 | 0.00 | 44.16 | 2.83 |
781 | 874 | 1.897133 | ACATGCTACGGTAGTGGAACA | 59.103 | 47.619 | 16.05 | 6.04 | 41.43 | 3.18 |
782 | 875 | 2.268298 | CACATGCTACGGTAGTGGAAC | 58.732 | 52.381 | 16.05 | 0.50 | 0.00 | 3.62 |
783 | 876 | 1.897133 | ACACATGCTACGGTAGTGGAA | 59.103 | 47.619 | 16.05 | 1.53 | 34.65 | 3.53 |
784 | 877 | 1.552578 | ACACATGCTACGGTAGTGGA | 58.447 | 50.000 | 16.05 | 2.17 | 34.65 | 4.02 |
899 | 995 | 3.584848 | GGATATATGCTAGGCCTATGGGG | 59.415 | 52.174 | 14.30 | 2.23 | 38.36 | 4.96 |
941 | 1037 | 3.246112 | TGCGTGGTAAGGGCTGGT | 61.246 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
979 | 1075 | 1.749334 | GCGGCAGCTAGGTAGGATGT | 61.749 | 60.000 | 0.00 | 0.00 | 41.01 | 3.06 |
1038 | 1162 | 5.650543 | AGATGGAAATTTGAACGTAATGGC | 58.349 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
1057 | 1186 | 6.636562 | ACCACGGTCTTAATACTCTAGATG | 57.363 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1080 | 1212 | 1.137675 | CAGGGAGTGATCGATCAGCAA | 59.862 | 52.381 | 27.95 | 3.48 | 37.51 | 3.91 |
1093 | 1225 | 2.091055 | TCCATCTAGCTTAGCAGGGAGT | 60.091 | 50.000 | 7.07 | 0.00 | 0.00 | 3.85 |
1357 | 1562 | 5.767168 | AGAATTGCAGAGAAACAACTAGCTT | 59.233 | 36.000 | 0.00 | 0.00 | 0.00 | 3.74 |
1374 | 1579 | 7.189693 | TCACGATATAAACATGGAGAATTGC | 57.810 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1436 | 1656 | 4.340894 | CCATCCGGCACATATATTTTCG | 57.659 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
1453 | 1673 | 5.177327 | CCAACAAACACAGTTAATTGCCATC | 59.823 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1485 | 1705 | 6.696441 | ACGGAGAGAGTAGTACCTAAAATG | 57.304 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
1492 | 1712 | 6.749923 | TTTAGAAACGGAGAGAGTAGTACC | 57.250 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
1495 | 1715 | 9.287373 | CCTATATTTAGAAACGGAGAGAGTAGT | 57.713 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1496 | 1716 | 9.287373 | ACCTATATTTAGAAACGGAGAGAGTAG | 57.713 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1497 | 1717 | 9.282569 | GACCTATATTTAGAAACGGAGAGAGTA | 57.717 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1498 | 1718 | 7.778853 | TGACCTATATTTAGAAACGGAGAGAGT | 59.221 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1499 | 1719 | 8.167605 | TGACCTATATTTAGAAACGGAGAGAG | 57.832 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
1564 | 1784 | 9.909644 | GTATGTAGTCCGTATTGAAATATGTCT | 57.090 | 33.333 | 0.00 | 3.40 | 0.00 | 3.41 |
1565 | 1785 | 9.687210 | TGTATGTAGTCCGTATTGAAATATGTC | 57.313 | 33.333 | 2.47 | 0.00 | 0.00 | 3.06 |
1566 | 1786 | 9.692749 | CTGTATGTAGTCCGTATTGAAATATGT | 57.307 | 33.333 | 2.47 | 0.00 | 0.00 | 2.29 |
1567 | 1787 | 9.908152 | TCTGTATGTAGTCCGTATTGAAATATG | 57.092 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
1569 | 1789 | 9.908152 | CATCTGTATGTAGTCCGTATTGAAATA | 57.092 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1570 | 1790 | 8.421784 | ACATCTGTATGTAGTCCGTATTGAAAT | 58.578 | 33.333 | 0.00 | 0.00 | 44.66 | 2.17 |
1571 | 1791 | 7.778083 | ACATCTGTATGTAGTCCGTATTGAAA | 58.222 | 34.615 | 0.00 | 0.00 | 44.66 | 2.69 |
1572 | 1792 | 7.342769 | ACATCTGTATGTAGTCCGTATTGAA | 57.657 | 36.000 | 0.00 | 0.00 | 44.66 | 2.69 |
1573 | 1793 | 6.954487 | ACATCTGTATGTAGTCCGTATTGA | 57.046 | 37.500 | 0.00 | 0.00 | 44.66 | 2.57 |
1589 | 1809 | 9.928618 | ATCTGTATGTAGGCTATATACATCTGT | 57.071 | 33.333 | 31.47 | 19.90 | 41.71 | 3.41 |
1637 | 1857 | 9.053472 | TGAAAGTACTCCCTCCATTTCTAAATA | 57.947 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1638 | 1858 | 7.928873 | TGAAAGTACTCCCTCCATTTCTAAAT | 58.071 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
1639 | 1859 | 7.324388 | TGAAAGTACTCCCTCCATTTCTAAA | 57.676 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1640 | 1860 | 6.945636 | TGAAAGTACTCCCTCCATTTCTAA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
1641 | 1861 | 6.945636 | TTGAAAGTACTCCCTCCATTTCTA | 57.054 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
1642 | 1862 | 5.843019 | TTGAAAGTACTCCCTCCATTTCT | 57.157 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1643 | 1863 | 5.106118 | GCTTTGAAAGTACTCCCTCCATTTC | 60.106 | 44.000 | 6.81 | 0.00 | 0.00 | 2.17 |
1644 | 1864 | 4.767409 | GCTTTGAAAGTACTCCCTCCATTT | 59.233 | 41.667 | 6.81 | 0.00 | 0.00 | 2.32 |
1645 | 1865 | 4.043435 | AGCTTTGAAAGTACTCCCTCCATT | 59.957 | 41.667 | 6.81 | 0.00 | 0.00 | 3.16 |
1646 | 1866 | 3.589288 | AGCTTTGAAAGTACTCCCTCCAT | 59.411 | 43.478 | 6.81 | 0.00 | 0.00 | 3.41 |
1647 | 1867 | 2.979678 | AGCTTTGAAAGTACTCCCTCCA | 59.020 | 45.455 | 6.81 | 0.00 | 0.00 | 3.86 |
1648 | 1868 | 3.008049 | TGAGCTTTGAAAGTACTCCCTCC | 59.992 | 47.826 | 6.81 | 0.00 | 0.00 | 4.30 |
1649 | 1869 | 4.273148 | TGAGCTTTGAAAGTACTCCCTC | 57.727 | 45.455 | 6.81 | 4.23 | 0.00 | 4.30 |
1653 | 1873 | 6.593382 | AGATGACATGAGCTTTGAAAGTACTC | 59.407 | 38.462 | 6.81 | 6.25 | 0.00 | 2.59 |
1655 | 1875 | 6.593382 | AGAGATGACATGAGCTTTGAAAGTAC | 59.407 | 38.462 | 6.81 | 2.16 | 0.00 | 2.73 |
1662 | 1903 | 3.872182 | CCTCAGAGATGACATGAGCTTTG | 59.128 | 47.826 | 0.00 | 0.00 | 39.30 | 2.77 |
1663 | 1904 | 3.518705 | ACCTCAGAGATGACATGAGCTTT | 59.481 | 43.478 | 0.00 | 0.00 | 39.30 | 3.51 |
1673 | 1914 | 4.061131 | TCCAACCTTACCTCAGAGATGA | 57.939 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
1677 | 1918 | 3.339141 | GCTTTCCAACCTTACCTCAGAG | 58.661 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
1687 | 1928 | 1.545651 | GCACTACTGGCTTTCCAACCT | 60.546 | 52.381 | 0.00 | 0.00 | 42.91 | 3.50 |
1693 | 1937 | 3.813166 | TGTACTTTGCACTACTGGCTTTC | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
1697 | 1941 | 3.813166 | TCTTTGTACTTTGCACTACTGGC | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
1698 | 1942 | 4.814234 | TGTCTTTGTACTTTGCACTACTGG | 59.186 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1699 | 1943 | 5.523916 | AGTGTCTTTGTACTTTGCACTACTG | 59.476 | 40.000 | 0.00 | 0.00 | 34.47 | 2.74 |
1700 | 1944 | 5.523916 | CAGTGTCTTTGTACTTTGCACTACT | 59.476 | 40.000 | 9.17 | 0.00 | 34.47 | 2.57 |
1701 | 1945 | 5.293569 | ACAGTGTCTTTGTACTTTGCACTAC | 59.706 | 40.000 | 0.00 | 0.00 | 34.47 | 2.73 |
1702 | 1946 | 5.293324 | CACAGTGTCTTTGTACTTTGCACTA | 59.707 | 40.000 | 0.00 | 0.00 | 34.47 | 2.74 |
1789 | 2182 | 2.582498 | GCGCTAACGATCGTGCCT | 60.582 | 61.111 | 23.51 | 9.01 | 43.93 | 4.75 |
1794 | 2187 | 4.327009 | GCAGCGCGCTAACGATCG | 62.327 | 66.667 | 36.02 | 20.71 | 43.93 | 3.69 |
1830 | 2271 | 8.691661 | ATGGGTATTATGCTAAACTGTTTAGG | 57.308 | 34.615 | 30.81 | 18.24 | 42.23 | 2.69 |
1850 | 2294 | 8.051535 | CCTCTGCATTATATCATTTAGATGGGT | 58.948 | 37.037 | 0.00 | 0.00 | 37.57 | 4.51 |
1854 | 2298 | 9.829507 | GCTACCTCTGCATTATATCATTTAGAT | 57.170 | 33.333 | 0.00 | 0.00 | 40.86 | 1.98 |
1863 | 2307 | 4.171234 | AGTGGGCTACCTCTGCATTATAT | 58.829 | 43.478 | 0.00 | 0.00 | 39.07 | 0.86 |
1869 | 2313 | 1.879575 | AATAGTGGGCTACCTCTGCA | 58.120 | 50.000 | 0.00 | 0.00 | 40.63 | 4.41 |
1931 | 3631 | 0.885196 | GCGGTGGCTTATTCCAACAA | 59.115 | 50.000 | 0.00 | 0.00 | 44.01 | 2.83 |
1991 | 3693 | 2.111043 | CAGTGTGTCCCGCCTGTT | 59.889 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
2091 | 3793 | 1.557907 | CGCACACACTACACACACG | 59.442 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
2093 | 3795 | 1.153549 | TGCGCACACACTACACACA | 60.154 | 52.632 | 5.66 | 0.00 | 0.00 | 3.72 |
2115 | 5440 | 0.731417 | CTCATGCTACTGCCACAAGC | 59.269 | 55.000 | 0.00 | 0.00 | 44.14 | 4.01 |
2117 | 5442 | 1.072173 | ACACTCATGCTACTGCCACAA | 59.928 | 47.619 | 0.00 | 0.00 | 38.71 | 3.33 |
2118 | 5443 | 0.686789 | ACACTCATGCTACTGCCACA | 59.313 | 50.000 | 0.00 | 0.00 | 38.71 | 4.17 |
2459 | 7609 | 4.040952 | AGAAGAAGGAGCACACAATACACT | 59.959 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
2460 | 7610 | 4.319177 | AGAAGAAGGAGCACACAATACAC | 58.681 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2461 | 7611 | 4.623932 | AGAAGAAGGAGCACACAATACA | 57.376 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
2462 | 7612 | 5.948992 | AAAGAAGAAGGAGCACACAATAC | 57.051 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
2463 | 7613 | 6.430000 | GGTAAAAGAAGAAGGAGCACACAATA | 59.570 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
2464 | 7614 | 5.241728 | GGTAAAAGAAGAAGGAGCACACAAT | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2465 | 7615 | 4.578928 | GGTAAAAGAAGAAGGAGCACACAA | 59.421 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2466 | 7616 | 4.134563 | GGTAAAAGAAGAAGGAGCACACA | 58.865 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
2467 | 7617 | 4.390264 | AGGTAAAAGAAGAAGGAGCACAC | 58.610 | 43.478 | 0.00 | 0.00 | 0.00 | 3.82 |
2468 | 7618 | 4.505039 | GGAGGTAAAAGAAGAAGGAGCACA | 60.505 | 45.833 | 0.00 | 0.00 | 0.00 | 4.57 |
2469 | 7619 | 4.004314 | GGAGGTAAAAGAAGAAGGAGCAC | 58.996 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
2470 | 7620 | 3.650942 | TGGAGGTAAAAGAAGAAGGAGCA | 59.349 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
2477 | 7627 | 4.788075 | TGGATGGATGGAGGTAAAAGAAGA | 59.212 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
2483 | 7633 | 3.785325 | TCACATGGATGGATGGAGGTAAA | 59.215 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
2485 | 7635 | 2.974794 | CTCACATGGATGGATGGAGGTA | 59.025 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2486 | 7636 | 1.773052 | CTCACATGGATGGATGGAGGT | 59.227 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2487 | 7637 | 2.038689 | CTCTCACATGGATGGATGGAGG | 59.961 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
2488 | 7638 | 2.970640 | TCTCTCACATGGATGGATGGAG | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2489 | 7639 | 2.970640 | CTCTCTCACATGGATGGATGGA | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2490 | 7640 | 2.550423 | GCTCTCTCACATGGATGGATGG | 60.550 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
2491 | 7641 | 2.104281 | TGCTCTCTCACATGGATGGATG | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2500 | 7650 | 4.077300 | TGTTGAAACTGCTCTCTCACAT | 57.923 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
2593 | 7745 | 7.721399 | GCCATCCTTTTCTAGATAATGGAAGAA | 59.279 | 37.037 | 14.63 | 0.00 | 33.94 | 2.52 |
2688 | 8148 | 8.976353 | TGTACCCTATTTACGTATTGAAGGTAA | 58.024 | 33.333 | 12.98 | 0.00 | 36.82 | 2.85 |
2695 | 8155 | 8.080083 | GGTCATTGTACCCTATTTACGTATTG | 57.920 | 38.462 | 0.00 | 0.00 | 33.02 | 1.90 |
2710 | 8170 | 3.055385 | TCTGCCTAGTTGGGTCATTGTAC | 60.055 | 47.826 | 0.00 | 0.00 | 36.00 | 2.90 |
2723 | 8183 | 2.106566 | CACATCTCCAGTCTGCCTAGT | 58.893 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
2732 | 8192 | 2.599645 | GATGCCGCCACATCTCCAGT | 62.600 | 60.000 | 6.40 | 0.00 | 42.63 | 4.00 |
2736 | 8423 | 1.151668 | GTATGATGCCGCCACATCTC | 58.848 | 55.000 | 13.16 | 3.13 | 45.51 | 2.75 |
2737 | 8424 | 0.469494 | TGTATGATGCCGCCACATCT | 59.531 | 50.000 | 13.16 | 3.99 | 45.51 | 2.90 |
2758 | 8445 | 1.975680 | ACCCGTTCCTTGAGCTTCTTA | 59.024 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
2790 | 8480 | 2.423185 | TGTGCAGAGGTTTTCTTGTGTG | 59.577 | 45.455 | 0.00 | 0.00 | 32.41 | 3.82 |
2800 | 8490 | 0.111061 | TCATGGCTTGTGCAGAGGTT | 59.889 | 50.000 | 0.00 | 0.00 | 41.91 | 3.50 |
2894 | 8592 | 4.160329 | GACTCCAAATTTTCCCCTCCTTT | 58.840 | 43.478 | 0.00 | 0.00 | 0.00 | 3.11 |
2903 | 8601 | 3.191371 | AGTGGCGATGACTCCAAATTTTC | 59.809 | 43.478 | 0.00 | 0.00 | 32.42 | 2.29 |
2908 | 8606 | 0.321564 | CCAGTGGCGATGACTCCAAA | 60.322 | 55.000 | 0.00 | 0.00 | 32.42 | 3.28 |
2931 | 8629 | 1.741401 | TCAGATTGCCGCACTTCCG | 60.741 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
2935 | 8633 | 0.806868 | CAATGTCAGATTGCCGCACT | 59.193 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2951 | 8649 | 1.471119 | CTCACCTCCATGCTTGCAAT | 58.529 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2952 | 8650 | 0.609957 | CCTCACCTCCATGCTTGCAA | 60.610 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
3022 | 8720 | 1.304617 | GGCCCCTTCTTCCTCAAGG | 59.695 | 63.158 | 0.00 | 0.00 | 40.33 | 3.61 |
3087 | 8785 | 1.117150 | TCCCCGGAAGTGTATAGTGC | 58.883 | 55.000 | 0.73 | 0.00 | 0.00 | 4.40 |
3099 | 8797 | 3.826221 | CGTATGTACGTCCCCGGA | 58.174 | 61.111 | 0.73 | 0.00 | 44.13 | 5.14 |
3125 | 9151 | 2.404215 | GACTCAGTGTGCACATTACGT | 58.596 | 47.619 | 24.69 | 17.80 | 0.00 | 3.57 |
3133 | 9159 | 3.578282 | TGAATTCTAGGACTCAGTGTGCA | 59.422 | 43.478 | 7.05 | 0.00 | 39.64 | 4.57 |
3139 | 9165 | 5.105752 | CGAAACCTGAATTCTAGGACTCAG | 58.894 | 45.833 | 22.86 | 2.26 | 38.71 | 3.35 |
3154 | 9181 | 7.116233 | GCATAAATAATTATTGGCCGAAACCTG | 59.884 | 37.037 | 11.42 | 0.43 | 29.08 | 4.00 |
3287 | 9321 | 5.850557 | TTATAAGGTTACCGATCCAACGA | 57.149 | 39.130 | 0.00 | 0.00 | 35.09 | 3.85 |
3318 | 9352 | 2.624838 | TCCCGTCCGATAAGTATGAACC | 59.375 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3372 | 9965 | 8.325997 | GCCTTTTACTTGTGTATATGACGTTAG | 58.674 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
3378 | 10301 | 7.987750 | TTGTGCCTTTTACTTGTGTATATGA | 57.012 | 32.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3431 | 10354 | 2.869801 | CTGTAGTTCCGCAGTTTCACAA | 59.130 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
3450 | 10378 | 7.642082 | AAGAAAATGATTGGAGAGGAATCTG | 57.358 | 36.000 | 0.00 | 0.00 | 32.04 | 2.90 |
3511 | 14770 | 3.010584 | TCCAAATTTCTGGGCTAGCTTCT | 59.989 | 43.478 | 15.72 | 0.00 | 37.06 | 2.85 |
3536 | 14832 | 3.059188 | CACGTTGTGTACATCCAAGGTTC | 60.059 | 47.826 | 17.13 | 0.25 | 37.52 | 3.62 |
3690 | 15031 | 9.781834 | TGGAATTAGTTAACTTAATTTGATGCG | 57.218 | 29.630 | 14.49 | 0.00 | 0.00 | 4.73 |
3714 | 15055 | 9.294030 | GCACAATAACAAGAGAGAAATTTATGG | 57.706 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
3769 | 15111 | 4.814771 | AGTCGTTCGGAAATTCTTGAAACT | 59.185 | 37.500 | 0.00 | 2.92 | 0.00 | 2.66 |
3826 | 15168 | 9.640974 | CGTGGATTGTTTATTTATACGGTTAAG | 57.359 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
3827 | 15169 | 9.376075 | TCGTGGATTGTTTATTTATACGGTTAA | 57.624 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
3828 | 15170 | 8.939201 | TCGTGGATTGTTTATTTATACGGTTA | 57.061 | 30.769 | 0.00 | 0.00 | 0.00 | 2.85 |
3829 | 15171 | 7.846644 | TCGTGGATTGTTTATTTATACGGTT | 57.153 | 32.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3830 | 15172 | 7.846644 | TTCGTGGATTGTTTATTTATACGGT | 57.153 | 32.000 | 0.00 | 0.00 | 0.00 | 4.83 |
3831 | 15173 | 8.013378 | GGATTCGTGGATTGTTTATTTATACGG | 58.987 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
3832 | 15174 | 8.770828 | AGGATTCGTGGATTGTTTATTTATACG | 58.229 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3835 | 15177 | 9.621629 | TGTAGGATTCGTGGATTGTTTATTTAT | 57.378 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
3836 | 15178 | 9.104965 | CTGTAGGATTCGTGGATTGTTTATTTA | 57.895 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3837 | 15179 | 7.067008 | CCTGTAGGATTCGTGGATTGTTTATTT | 59.933 | 37.037 | 0.00 | 0.00 | 37.39 | 1.40 |
3838 | 15180 | 6.542370 | CCTGTAGGATTCGTGGATTGTTTATT | 59.458 | 38.462 | 0.00 | 0.00 | 37.39 | 1.40 |
3839 | 15181 | 6.055588 | CCTGTAGGATTCGTGGATTGTTTAT | 58.944 | 40.000 | 0.00 | 0.00 | 37.39 | 1.40 |
3840 | 15182 | 5.188163 | TCCTGTAGGATTCGTGGATTGTTTA | 59.812 | 40.000 | 0.00 | 0.00 | 39.78 | 2.01 |
3841 | 15183 | 4.019681 | TCCTGTAGGATTCGTGGATTGTTT | 60.020 | 41.667 | 0.00 | 0.00 | 39.78 | 2.83 |
3842 | 15184 | 3.517901 | TCCTGTAGGATTCGTGGATTGTT | 59.482 | 43.478 | 0.00 | 0.00 | 39.78 | 2.83 |
3843 | 15185 | 3.104512 | TCCTGTAGGATTCGTGGATTGT | 58.895 | 45.455 | 0.00 | 0.00 | 39.78 | 2.71 |
3844 | 15186 | 3.819564 | TCCTGTAGGATTCGTGGATTG | 57.180 | 47.619 | 0.00 | 0.00 | 39.78 | 2.67 |
3856 | 15198 | 5.823045 | GTGTTTTCATCCCTAATCCTGTAGG | 59.177 | 44.000 | 0.00 | 0.00 | 40.48 | 3.18 |
3857 | 15199 | 5.823045 | GGTGTTTTCATCCCTAATCCTGTAG | 59.177 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3858 | 15200 | 5.491078 | AGGTGTTTTCATCCCTAATCCTGTA | 59.509 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3859 | 15201 | 4.292306 | AGGTGTTTTCATCCCTAATCCTGT | 59.708 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
3860 | 15202 | 4.860022 | AGGTGTTTTCATCCCTAATCCTG | 58.140 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3861 | 15203 | 5.536497 | AAGGTGTTTTCATCCCTAATCCT | 57.464 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
3862 | 15204 | 7.712204 | TTTAAGGTGTTTTCATCCCTAATCC | 57.288 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3864 | 15206 | 8.914011 | GCTATTTAAGGTGTTTTCATCCCTAAT | 58.086 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
3865 | 15207 | 8.113462 | AGCTATTTAAGGTGTTTTCATCCCTAA | 58.887 | 33.333 | 0.00 | 0.00 | 33.68 | 2.69 |
3866 | 15208 | 7.639378 | AGCTATTTAAGGTGTTTTCATCCCTA | 58.361 | 34.615 | 0.00 | 0.00 | 33.68 | 3.53 |
3867 | 15209 | 6.494059 | AGCTATTTAAGGTGTTTTCATCCCT | 58.506 | 36.000 | 0.00 | 0.00 | 33.68 | 4.20 |
3868 | 15210 | 6.775594 | AGCTATTTAAGGTGTTTTCATCCC | 57.224 | 37.500 | 0.00 | 0.00 | 33.68 | 3.85 |
3869 | 15211 | 8.507524 | AGTAGCTATTTAAGGTGTTTTCATCC | 57.492 | 34.615 | 0.00 | 0.00 | 37.13 | 3.51 |
3870 | 15212 | 8.613482 | GGAGTAGCTATTTAAGGTGTTTTCATC | 58.387 | 37.037 | 0.00 | 0.00 | 37.13 | 2.92 |
3871 | 15213 | 7.556635 | GGGAGTAGCTATTTAAGGTGTTTTCAT | 59.443 | 37.037 | 0.00 | 0.00 | 37.13 | 2.57 |
3872 | 15214 | 6.882678 | GGGAGTAGCTATTTAAGGTGTTTTCA | 59.117 | 38.462 | 0.00 | 0.00 | 37.13 | 2.69 |
3873 | 15215 | 7.110810 | AGGGAGTAGCTATTTAAGGTGTTTTC | 58.889 | 38.462 | 0.00 | 0.00 | 37.13 | 2.29 |
3874 | 15216 | 7.029053 | AGGGAGTAGCTATTTAAGGTGTTTT | 57.971 | 36.000 | 0.00 | 0.00 | 37.13 | 2.43 |
3875 | 15217 | 6.444171 | AGAGGGAGTAGCTATTTAAGGTGTTT | 59.556 | 38.462 | 0.00 | 0.00 | 37.13 | 2.83 |
3876 | 15218 | 5.965091 | AGAGGGAGTAGCTATTTAAGGTGTT | 59.035 | 40.000 | 0.00 | 0.00 | 37.13 | 3.32 |
3877 | 15219 | 5.364157 | CAGAGGGAGTAGCTATTTAAGGTGT | 59.636 | 44.000 | 0.00 | 0.00 | 37.13 | 4.16 |
3878 | 15220 | 5.364157 | ACAGAGGGAGTAGCTATTTAAGGTG | 59.636 | 44.000 | 0.00 | 0.00 | 37.13 | 4.00 |
3879 | 15221 | 5.530243 | ACAGAGGGAGTAGCTATTTAAGGT | 58.470 | 41.667 | 0.00 | 0.00 | 39.81 | 3.50 |
3880 | 15222 | 6.487299 | AACAGAGGGAGTAGCTATTTAAGG | 57.513 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
3881 | 15223 | 7.556844 | TGAAACAGAGGGAGTAGCTATTTAAG | 58.443 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
3882 | 15224 | 7.490657 | TGAAACAGAGGGAGTAGCTATTTAA | 57.509 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3883 | 15225 | 7.490657 | TTGAAACAGAGGGAGTAGCTATTTA | 57.509 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3884 | 15226 | 6.374417 | TTGAAACAGAGGGAGTAGCTATTT | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
3885 | 15227 | 6.374417 | TTTGAAACAGAGGGAGTAGCTATT | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
3886 | 15228 | 6.374417 | TTTTGAAACAGAGGGAGTAGCTAT | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
3887 | 15229 | 5.818678 | TTTTGAAACAGAGGGAGTAGCTA | 57.181 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3888 | 15230 | 4.706842 | TTTTGAAACAGAGGGAGTAGCT | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
3889 | 15231 | 7.988028 | ACTATATTTTGAAACAGAGGGAGTAGC | 59.012 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
3890 | 15232 | 9.319143 | CACTATATTTTGAAACAGAGGGAGTAG | 57.681 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3891 | 15233 | 8.822805 | ACACTATATTTTGAAACAGAGGGAGTA | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3892 | 15234 | 7.607991 | CACACTATATTTTGAAACAGAGGGAGT | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
3893 | 15235 | 7.414540 | GCACACTATATTTTGAAACAGAGGGAG | 60.415 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
3894 | 15236 | 6.374333 | GCACACTATATTTTGAAACAGAGGGA | 59.626 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
3895 | 15237 | 6.404734 | GGCACACTATATTTTGAAACAGAGGG | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
3896 | 15238 | 6.404734 | GGGCACACTATATTTTGAAACAGAGG | 60.405 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
3897 | 15239 | 6.150976 | TGGGCACACTATATTTTGAAACAGAG | 59.849 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
3898 | 15240 | 6.007076 | TGGGCACACTATATTTTGAAACAGA | 58.993 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3899 | 15241 | 6.092748 | GTGGGCACACTATATTTTGAAACAG | 58.907 | 40.000 | 13.14 | 0.00 | 44.29 | 3.16 |
3900 | 15242 | 5.335269 | CGTGGGCACACTATATTTTGAAACA | 60.335 | 40.000 | 18.70 | 0.00 | 45.50 | 2.83 |
3901 | 15243 | 5.092781 | CGTGGGCACACTATATTTTGAAAC | 58.907 | 41.667 | 18.70 | 0.00 | 45.50 | 2.78 |
3902 | 15244 | 4.380023 | GCGTGGGCACACTATATTTTGAAA | 60.380 | 41.667 | 18.70 | 0.00 | 45.50 | 2.69 |
3903 | 15245 | 3.127895 | GCGTGGGCACACTATATTTTGAA | 59.872 | 43.478 | 18.70 | 0.00 | 45.50 | 2.69 |
3904 | 15246 | 2.680841 | GCGTGGGCACACTATATTTTGA | 59.319 | 45.455 | 18.70 | 0.00 | 45.50 | 2.69 |
3905 | 15247 | 2.682856 | AGCGTGGGCACACTATATTTTG | 59.317 | 45.455 | 18.70 | 0.00 | 45.50 | 2.44 |
3906 | 15248 | 2.999331 | AGCGTGGGCACACTATATTTT | 58.001 | 42.857 | 18.70 | 0.00 | 45.50 | 1.82 |
3907 | 15249 | 2.710096 | AGCGTGGGCACACTATATTT | 57.290 | 45.000 | 18.70 | 0.00 | 45.50 | 1.40 |
3908 | 15250 | 2.710096 | AAGCGTGGGCACACTATATT | 57.290 | 45.000 | 18.70 | 3.32 | 45.50 | 1.28 |
3909 | 15251 | 2.710096 | AAAGCGTGGGCACACTATAT | 57.290 | 45.000 | 18.70 | 0.00 | 45.50 | 0.86 |
3910 | 15252 | 2.352388 | GAAAAGCGTGGGCACACTATA | 58.648 | 47.619 | 18.70 | 0.00 | 45.50 | 1.31 |
3911 | 15253 | 1.165270 | GAAAAGCGTGGGCACACTAT | 58.835 | 50.000 | 18.70 | 1.73 | 45.50 | 2.12 |
3912 | 15254 | 1.225376 | CGAAAAGCGTGGGCACACTA | 61.225 | 55.000 | 18.70 | 0.00 | 45.50 | 2.74 |
3913 | 15255 | 2.542907 | CGAAAAGCGTGGGCACACT | 61.543 | 57.895 | 18.70 | 0.00 | 45.50 | 3.55 |
3914 | 15256 | 2.051345 | CGAAAAGCGTGGGCACAC | 60.051 | 61.111 | 9.72 | 9.72 | 43.41 | 3.82 |
3915 | 15257 | 2.203084 | TCGAAAAGCGTGGGCACA | 60.203 | 55.556 | 0.00 | 0.00 | 43.41 | 4.57 |
3916 | 15258 | 2.556287 | CTCGAAAAGCGTGGGCAC | 59.444 | 61.111 | 0.00 | 0.00 | 43.41 | 5.01 |
3917 | 15259 | 2.668212 | CCTCGAAAAGCGTGGGCA | 60.668 | 61.111 | 0.00 | 0.00 | 46.89 | 5.36 |
3921 | 15263 | 1.597663 | AGTTGAACCTCGAAAAGCGTG | 59.402 | 47.619 | 0.00 | 0.00 | 41.80 | 5.34 |
3922 | 15264 | 1.949465 | AGTTGAACCTCGAAAAGCGT | 58.051 | 45.000 | 0.00 | 0.00 | 41.80 | 5.07 |
3923 | 15265 | 3.035942 | CAAAGTTGAACCTCGAAAAGCG | 58.964 | 45.455 | 0.00 | 0.00 | 42.69 | 4.68 |
3924 | 15266 | 4.035684 | GTCAAAGTTGAACCTCGAAAAGC | 58.964 | 43.478 | 0.00 | 0.00 | 39.21 | 3.51 |
3925 | 15267 | 4.095782 | TGGTCAAAGTTGAACCTCGAAAAG | 59.904 | 41.667 | 6.62 | 0.00 | 44.20 | 2.27 |
3926 | 15268 | 4.011023 | TGGTCAAAGTTGAACCTCGAAAA | 58.989 | 39.130 | 6.62 | 0.00 | 44.20 | 2.29 |
3927 | 15269 | 3.611970 | TGGTCAAAGTTGAACCTCGAAA | 58.388 | 40.909 | 6.62 | 0.00 | 44.20 | 3.46 |
3928 | 15270 | 3.269538 | TGGTCAAAGTTGAACCTCGAA | 57.730 | 42.857 | 6.62 | 0.00 | 44.20 | 3.71 |
3929 | 15271 | 2.992124 | TGGTCAAAGTTGAACCTCGA | 57.008 | 45.000 | 6.62 | 0.00 | 44.20 | 4.04 |
3930 | 15272 | 5.682943 | TTTATGGTCAAAGTTGAACCTCG | 57.317 | 39.130 | 6.62 | 0.00 | 44.20 | 4.63 |
3931 | 15273 | 8.141268 | TCAAATTTATGGTCAAAGTTGAACCTC | 58.859 | 33.333 | 6.62 | 0.00 | 44.69 | 3.85 |
3932 | 15274 | 8.017418 | TCAAATTTATGGTCAAAGTTGAACCT | 57.983 | 30.769 | 6.62 | 0.00 | 44.69 | 3.50 |
3933 | 15275 | 7.170828 | GGTCAAATTTATGGTCAAAGTTGAACC | 59.829 | 37.037 | 13.08 | 11.95 | 46.60 | 3.62 |
3936 | 15278 | 7.353414 | TGGTCAAATTTATGGTCAAAGTTGA | 57.647 | 32.000 | 7.21 | 7.21 | 45.16 | 3.18 |
3937 | 15279 | 7.306515 | CGTTGGTCAAATTTATGGTCAAAGTTG | 60.307 | 37.037 | 0.00 | 3.17 | 42.09 | 3.16 |
3938 | 15280 | 6.699642 | CGTTGGTCAAATTTATGGTCAAAGTT | 59.300 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
3939 | 15281 | 6.039941 | TCGTTGGTCAAATTTATGGTCAAAGT | 59.960 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
3940 | 15282 | 6.442952 | TCGTTGGTCAAATTTATGGTCAAAG | 58.557 | 36.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3941 | 15283 | 6.263392 | TCTCGTTGGTCAAATTTATGGTCAAA | 59.737 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
3942 | 15284 | 5.765677 | TCTCGTTGGTCAAATTTATGGTCAA | 59.234 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3943 | 15285 | 5.180492 | GTCTCGTTGGTCAAATTTATGGTCA | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3944 | 15286 | 5.391629 | GGTCTCGTTGGTCAAATTTATGGTC | 60.392 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3945 | 15287 | 4.457949 | GGTCTCGTTGGTCAAATTTATGGT | 59.542 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
3946 | 15288 | 4.436852 | CGGTCTCGTTGGTCAAATTTATGG | 60.437 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
3947 | 15289 | 4.390603 | TCGGTCTCGTTGGTCAAATTTATG | 59.609 | 41.667 | 0.00 | 0.00 | 37.69 | 1.90 |
3948 | 15290 | 4.571919 | TCGGTCTCGTTGGTCAAATTTAT | 58.428 | 39.130 | 0.00 | 0.00 | 37.69 | 1.40 |
3949 | 15291 | 3.992643 | TCGGTCTCGTTGGTCAAATTTA | 58.007 | 40.909 | 0.00 | 0.00 | 37.69 | 1.40 |
3950 | 15292 | 2.841215 | TCGGTCTCGTTGGTCAAATTT | 58.159 | 42.857 | 0.00 | 0.00 | 37.69 | 1.82 |
3951 | 15293 | 2.536761 | TCGGTCTCGTTGGTCAAATT | 57.463 | 45.000 | 0.00 | 0.00 | 37.69 | 1.82 |
3952 | 15294 | 2.536761 | TTCGGTCTCGTTGGTCAAAT | 57.463 | 45.000 | 0.00 | 0.00 | 37.69 | 2.32 |
3953 | 15295 | 2.139917 | CATTCGGTCTCGTTGGTCAAA | 58.860 | 47.619 | 0.00 | 0.00 | 37.69 | 2.69 |
3954 | 15296 | 1.069513 | ACATTCGGTCTCGTTGGTCAA | 59.930 | 47.619 | 0.00 | 0.00 | 37.69 | 3.18 |
3955 | 15297 | 0.677288 | ACATTCGGTCTCGTTGGTCA | 59.323 | 50.000 | 0.00 | 0.00 | 37.69 | 4.02 |
3956 | 15298 | 1.068474 | CACATTCGGTCTCGTTGGTC | 58.932 | 55.000 | 0.00 | 0.00 | 37.69 | 4.02 |
3957 | 15299 | 0.320421 | CCACATTCGGTCTCGTTGGT | 60.320 | 55.000 | 0.00 | 0.00 | 37.69 | 3.67 |
3958 | 15300 | 1.635663 | GCCACATTCGGTCTCGTTGG | 61.636 | 60.000 | 0.00 | 0.00 | 37.69 | 3.77 |
3959 | 15301 | 1.787847 | GCCACATTCGGTCTCGTTG | 59.212 | 57.895 | 0.00 | 0.00 | 37.69 | 4.10 |
3960 | 15302 | 1.736645 | CGCCACATTCGGTCTCGTT | 60.737 | 57.895 | 0.00 | 0.00 | 37.69 | 3.85 |
3961 | 15303 | 2.126071 | CGCCACATTCGGTCTCGT | 60.126 | 61.111 | 0.00 | 0.00 | 37.69 | 4.18 |
3962 | 15304 | 2.829043 | TTCCGCCACATTCGGTCTCG | 62.829 | 60.000 | 1.22 | 0.00 | 46.49 | 4.04 |
3963 | 15305 | 1.079405 | TTCCGCCACATTCGGTCTC | 60.079 | 57.895 | 1.22 | 0.00 | 46.49 | 3.36 |
3964 | 15306 | 1.079127 | CTTCCGCCACATTCGGTCT | 60.079 | 57.895 | 1.22 | 0.00 | 46.49 | 3.85 |
3965 | 15307 | 2.750888 | GCTTCCGCCACATTCGGTC | 61.751 | 63.158 | 1.22 | 0.00 | 46.49 | 4.79 |
3966 | 15308 | 2.746277 | GCTTCCGCCACATTCGGT | 60.746 | 61.111 | 1.22 | 0.00 | 46.49 | 4.69 |
3968 | 15310 | 0.039617 | TTTTGCTTCCGCCACATTCG | 60.040 | 50.000 | 0.00 | 0.00 | 34.43 | 3.34 |
3969 | 15311 | 2.147436 | TTTTTGCTTCCGCCACATTC | 57.853 | 45.000 | 0.00 | 0.00 | 34.43 | 2.67 |
3970 | 15312 | 2.837532 | ATTTTTGCTTCCGCCACATT | 57.162 | 40.000 | 0.00 | 0.00 | 34.43 | 2.71 |
3971 | 15313 | 2.837532 | AATTTTTGCTTCCGCCACAT | 57.162 | 40.000 | 0.00 | 0.00 | 34.43 | 3.21 |
3972 | 15314 | 3.951775 | ATAATTTTTGCTTCCGCCACA | 57.048 | 38.095 | 0.00 | 0.00 | 34.43 | 4.17 |
3973 | 15315 | 7.167468 | CACTTATATAATTTTTGCTTCCGCCAC | 59.833 | 37.037 | 0.00 | 0.00 | 34.43 | 5.01 |
3974 | 15316 | 7.199766 | CACTTATATAATTTTTGCTTCCGCCA | 58.800 | 34.615 | 0.00 | 0.00 | 34.43 | 5.69 |
3975 | 15317 | 6.143919 | GCACTTATATAATTTTTGCTTCCGCC | 59.856 | 38.462 | 0.00 | 0.00 | 34.43 | 6.13 |
3976 | 15318 | 6.695278 | TGCACTTATATAATTTTTGCTTCCGC | 59.305 | 34.615 | 14.57 | 0.00 | 0.00 | 5.54 |
3977 | 15319 | 8.627487 | TTGCACTTATATAATTTTTGCTTCCG | 57.373 | 30.769 | 14.57 | 0.00 | 0.00 | 4.30 |
3992 | 15334 | 9.820229 | CGTATTCAAAAGAAGTTTGCACTTATA | 57.180 | 29.630 | 0.00 | 0.00 | 43.79 | 0.98 |
3993 | 15335 | 8.564574 | TCGTATTCAAAAGAAGTTTGCACTTAT | 58.435 | 29.630 | 0.00 | 0.00 | 43.79 | 1.73 |
3994 | 15336 | 7.921787 | TCGTATTCAAAAGAAGTTTGCACTTA | 58.078 | 30.769 | 0.00 | 0.00 | 43.79 | 2.24 |
3995 | 15337 | 6.791303 | TCGTATTCAAAAGAAGTTTGCACTT | 58.209 | 32.000 | 0.00 | 0.00 | 46.64 | 3.16 |
3996 | 15338 | 6.371809 | TCGTATTCAAAAGAAGTTTGCACT | 57.628 | 33.333 | 0.00 | 0.00 | 45.38 | 4.40 |
3997 | 15339 | 7.623268 | ATTCGTATTCAAAAGAAGTTTGCAC | 57.377 | 32.000 | 0.00 | 0.00 | 45.38 | 4.57 |
3998 | 15340 | 7.918033 | TGAATTCGTATTCAAAAGAAGTTTGCA | 59.082 | 29.630 | 14.23 | 0.00 | 45.38 | 4.08 |
3999 | 15341 | 8.280909 | TGAATTCGTATTCAAAAGAAGTTTGC | 57.719 | 30.769 | 14.23 | 0.00 | 45.38 | 3.68 |
4014 | 15356 | 9.607285 | GCAAAAATTATACCGATGAATTCGTAT | 57.393 | 29.630 | 0.00 | 4.77 | 46.65 | 3.06 |
4015 | 15357 | 8.832521 | AGCAAAAATTATACCGATGAATTCGTA | 58.167 | 29.630 | 0.00 | 0.00 | 46.65 | 3.43 |
4016 | 15358 | 7.703328 | AGCAAAAATTATACCGATGAATTCGT | 58.297 | 30.769 | 0.00 | 0.00 | 46.65 | 3.85 |
4018 | 15360 | 8.352942 | AGGAGCAAAAATTATACCGATGAATTC | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
4019 | 15361 | 8.137437 | CAGGAGCAAAAATTATACCGATGAATT | 58.863 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
4020 | 15362 | 7.651808 | CAGGAGCAAAAATTATACCGATGAAT | 58.348 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4021 | 15363 | 6.459573 | GCAGGAGCAAAAATTATACCGATGAA | 60.460 | 38.462 | 0.00 | 0.00 | 41.58 | 2.57 |
4022 | 15364 | 5.008613 | GCAGGAGCAAAAATTATACCGATGA | 59.991 | 40.000 | 0.00 | 0.00 | 41.58 | 2.92 |
4023 | 15365 | 5.215160 | GCAGGAGCAAAAATTATACCGATG | 58.785 | 41.667 | 0.00 | 0.00 | 41.58 | 3.84 |
4024 | 15366 | 4.278419 | GGCAGGAGCAAAAATTATACCGAT | 59.722 | 41.667 | 0.00 | 0.00 | 44.61 | 4.18 |
4025 | 15367 | 3.630312 | GGCAGGAGCAAAAATTATACCGA | 59.370 | 43.478 | 0.00 | 0.00 | 44.61 | 4.69 |
4026 | 15368 | 3.548014 | CGGCAGGAGCAAAAATTATACCG | 60.548 | 47.826 | 0.00 | 0.00 | 44.61 | 4.02 |
4027 | 15369 | 3.795488 | GCGGCAGGAGCAAAAATTATACC | 60.795 | 47.826 | 0.00 | 0.00 | 44.61 | 2.73 |
4028 | 15370 | 3.181491 | TGCGGCAGGAGCAAAAATTATAC | 60.181 | 43.478 | 0.00 | 0.00 | 44.61 | 1.47 |
4029 | 15371 | 3.020274 | TGCGGCAGGAGCAAAAATTATA | 58.980 | 40.909 | 0.00 | 0.00 | 44.61 | 0.98 |
4030 | 15372 | 1.824230 | TGCGGCAGGAGCAAAAATTAT | 59.176 | 42.857 | 0.00 | 0.00 | 44.61 | 1.28 |
4031 | 15373 | 1.252175 | TGCGGCAGGAGCAAAAATTA | 58.748 | 45.000 | 0.00 | 0.00 | 44.61 | 1.40 |
4032 | 15374 | 2.048601 | TGCGGCAGGAGCAAAAATT | 58.951 | 47.368 | 0.00 | 0.00 | 44.61 | 1.82 |
4033 | 15375 | 3.776158 | TGCGGCAGGAGCAAAAAT | 58.224 | 50.000 | 0.00 | 0.00 | 44.61 | 1.82 |
4047 | 15389 | 1.086696 | AACCAATGAGACCGATTGCG | 58.913 | 50.000 | 0.00 | 0.00 | 30.66 | 4.85 |
4048 | 15390 | 4.695217 | TTTAACCAATGAGACCGATTGC | 57.305 | 40.909 | 0.00 | 0.00 | 30.66 | 3.56 |
4049 | 15391 | 9.236691 | CATAAATTTAACCAATGAGACCGATTG | 57.763 | 33.333 | 1.21 | 0.00 | 0.00 | 2.67 |
4050 | 15392 | 8.413229 | CCATAAATTTAACCAATGAGACCGATT | 58.587 | 33.333 | 1.21 | 0.00 | 0.00 | 3.34 |
4051 | 15393 | 7.559897 | ACCATAAATTTAACCAATGAGACCGAT | 59.440 | 33.333 | 1.21 | 0.00 | 0.00 | 4.18 |
4052 | 15394 | 6.887545 | ACCATAAATTTAACCAATGAGACCGA | 59.112 | 34.615 | 1.21 | 0.00 | 0.00 | 4.69 |
4053 | 15395 | 7.095695 | ACCATAAATTTAACCAATGAGACCG | 57.904 | 36.000 | 1.21 | 0.00 | 0.00 | 4.79 |
4054 | 15396 | 8.062065 | TGACCATAAATTTAACCAATGAGACC | 57.938 | 34.615 | 1.21 | 0.00 | 0.00 | 3.85 |
4055 | 15397 | 9.921637 | TTTGACCATAAATTTAACCAATGAGAC | 57.078 | 29.630 | 1.21 | 0.00 | 0.00 | 3.36 |
4057 | 15399 | 9.927668 | ACTTTGACCATAAATTTAACCAATGAG | 57.072 | 29.630 | 1.21 | 3.35 | 0.00 | 2.90 |
4066 | 15408 | 9.400638 | CGTGCTTTAACTTTGACCATAAATTTA | 57.599 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
4067 | 15409 | 7.383843 | CCGTGCTTTAACTTTGACCATAAATTT | 59.616 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4068 | 15410 | 6.866248 | CCGTGCTTTAACTTTGACCATAAATT | 59.134 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
4069 | 15411 | 6.207810 | TCCGTGCTTTAACTTTGACCATAAAT | 59.792 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
4070 | 15412 | 5.531659 | TCCGTGCTTTAACTTTGACCATAAA | 59.468 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4071 | 15413 | 5.064558 | TCCGTGCTTTAACTTTGACCATAA | 58.935 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
4072 | 15414 | 4.643463 | TCCGTGCTTTAACTTTGACCATA | 58.357 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
4073 | 15415 | 3.482436 | TCCGTGCTTTAACTTTGACCAT | 58.518 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
4074 | 15416 | 2.875933 | CTCCGTGCTTTAACTTTGACCA | 59.124 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4075 | 15417 | 2.225727 | CCTCCGTGCTTTAACTTTGACC | 59.774 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4076 | 15418 | 3.059120 | GTCCTCCGTGCTTTAACTTTGAC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
4077 | 15419 | 3.135994 | GTCCTCCGTGCTTTAACTTTGA | 58.864 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
4078 | 15420 | 2.875933 | TGTCCTCCGTGCTTTAACTTTG | 59.124 | 45.455 | 0.00 | 0.00 | 0.00 | 2.77 |
4079 | 15421 | 2.876550 | GTGTCCTCCGTGCTTTAACTTT | 59.123 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
4080 | 15422 | 2.158871 | TGTGTCCTCCGTGCTTTAACTT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
4081 | 15423 | 1.414919 | TGTGTCCTCCGTGCTTTAACT | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
4082 | 15424 | 1.873698 | TGTGTCCTCCGTGCTTTAAC | 58.126 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4083 | 15425 | 2.215196 | GTTGTGTCCTCCGTGCTTTAA | 58.785 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
4084 | 15426 | 1.139256 | TGTTGTGTCCTCCGTGCTTTA | 59.861 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
4085 | 15427 | 0.107410 | TGTTGTGTCCTCCGTGCTTT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4086 | 15428 | 0.107410 | TTGTTGTGTCCTCCGTGCTT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4087 | 15429 | 0.532862 | CTTGTTGTGTCCTCCGTGCT | 60.533 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4088 | 15430 | 0.531974 | TCTTGTTGTGTCCTCCGTGC | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
4089 | 15431 | 2.069273 | GATCTTGTTGTGTCCTCCGTG | 58.931 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
4090 | 15432 | 1.691976 | TGATCTTGTTGTGTCCTCCGT | 59.308 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
4091 | 15433 | 2.455674 | TGATCTTGTTGTGTCCTCCG | 57.544 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4092 | 15434 | 4.074970 | ACATTGATCTTGTTGTGTCCTCC | 58.925 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4093 | 15435 | 6.595326 | TCATACATTGATCTTGTTGTGTCCTC | 59.405 | 38.462 | 7.10 | 0.00 | 0.00 | 3.71 |
4094 | 15436 | 6.475504 | TCATACATTGATCTTGTTGTGTCCT | 58.524 | 36.000 | 7.10 | 0.00 | 0.00 | 3.85 |
4095 | 15437 | 6.741992 | TCATACATTGATCTTGTTGTGTCC | 57.258 | 37.500 | 7.10 | 0.00 | 0.00 | 4.02 |
4096 | 15438 | 9.462174 | TTTTTCATACATTGATCTTGTTGTGTC | 57.538 | 29.630 | 7.10 | 0.00 | 33.34 | 3.67 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.