Multiple sequence alignment - TraesCS3D01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G008700 chr3D 100.000 5405 0 0 1 5405 3010938 3016342 0.000000e+00 9982.0
1 TraesCS3D01G008700 chr3D 79.871 929 165 18 3503 4425 2999465 2998553 0.000000e+00 660.0
2 TraesCS3D01G008700 chr3D 75.177 282 46 14 1071 1335 3024944 3024670 1.590000e-20 111.0
3 TraesCS3D01G008700 chr3A 94.081 3024 124 30 1957 4955 17114 14121 0.000000e+00 4542.0
4 TraesCS3D01G008700 chr3A 93.915 3024 121 34 1957 4955 67031 64046 0.000000e+00 4506.0
5 TraesCS3D01G008700 chr3A 94.683 2821 110 22 1957 4765 44143 41351 0.000000e+00 4342.0
6 TraesCS3D01G008700 chr3A 90.006 1741 115 38 4 1703 45924 44202 0.000000e+00 2196.0
7 TraesCS3D01G008700 chr3A 94.034 989 45 8 727 1703 18159 17173 0.000000e+00 1487.0
8 TraesCS3D01G008700 chr3A 93.171 659 33 6 1057 1703 67748 67090 0.000000e+00 957.0
9 TraesCS3D01G008700 chr3A 85.398 452 46 13 4959 5404 41081 40644 8.260000e-123 451.0
10 TraesCS3D01G008700 chr3A 85.398 452 46 13 4959 5404 63997 63560 8.260000e-123 451.0
11 TraesCS3D01G008700 chr3A 85.128 390 45 12 4959 5342 14072 13690 2.360000e-103 387.0
12 TraesCS3D01G008700 chr3A 97.740 177 3 1 4780 4955 41306 41130 2.450000e-78 303.0
13 TraesCS3D01G008700 chr3B 94.263 2545 131 10 1957 4495 2475027 2477562 0.000000e+00 3877.0
14 TraesCS3D01G008700 chr3B 85.645 1031 94 27 728 1718 2473979 2474995 0.000000e+00 1035.0
15 TraesCS3D01G008700 chr3B 79.721 932 167 15 3503 4424 2513819 2514738 0.000000e+00 654.0
16 TraesCS3D01G008700 chr3B 80.365 876 148 19 3503 4369 2492576 2493436 1.270000e-180 643.0
17 TraesCS3D01G008700 chr3B 78.899 872 167 15 3503 4369 2487196 2488055 4.700000e-160 575.0
18 TraesCS3D01G008700 chr3B 79.690 645 122 9 1999 2640 3042955 3042317 1.770000e-124 457.0
19 TraesCS3D01G008700 chr3B 78.686 685 125 16 1962 2639 2512429 2513099 2.310000e-118 436.0
20 TraesCS3D01G008700 chr3B 78.190 674 125 10 1967 2639 2491208 2491860 1.400000e-110 411.0
21 TraesCS3D01G008700 chr3B 83.791 364 29 17 4585 4918 2477557 2477920 8.740000e-83 318.0
22 TraesCS3D01G008700 chr3B 89.202 213 23 0 1258 1470 2485104 2485316 3.210000e-67 267.0
23 TraesCS3D01G008700 chr3B 90.000 200 12 2 424 617 2472629 2472826 8.990000e-63 252.0
24 TraesCS3D01G008700 chr3B 97.321 112 3 0 5270 5381 2478073 2478184 1.990000e-44 191.0
25 TraesCS3D01G008700 chrUn 95.600 2250 80 14 1957 4195 308942104 308944345 0.000000e+00 3589.0
26 TraesCS3D01G008700 chrUn 90.211 1655 109 37 90 1703 308940403 308942045 0.000000e+00 2109.0
27 TraesCS3D01G008700 chrUn 81.164 876 142 19 3503 4372 32132988 32132130 0.000000e+00 682.0
28 TraesCS3D01G008700 chrUn 81.182 457 66 13 1260 1701 32090362 32089911 3.100000e-92 350.0
29 TraesCS3D01G008700 chrUn 87.793 213 26 0 1258 1470 32135086 32134874 3.230000e-62 250.0
30 TraesCS3D01G008700 chr4A 86.008 243 34 0 4523 4765 309077150 309076908 1.490000e-65 261.0
31 TraesCS3D01G008700 chr4B 86.008 243 33 1 4523 4765 330777557 330777316 5.370000e-65 259.0
32 TraesCS3D01G008700 chr4D 85.366 246 33 2 4520 4765 175797685 175797927 8.990000e-63 252.0
33 TraesCS3D01G008700 chr4D 85.356 239 32 3 4532 4769 10742951 10742715 1.500000e-60 244.0
34 TraesCS3D01G008700 chr5A 85.185 243 34 2 4524 4765 584791082 584791323 1.160000e-61 248.0
35 TraesCS3D01G008700 chr7A 84.232 241 36 2 4526 4765 668772788 668772549 3.260000e-57 233.0
36 TraesCS3D01G008700 chr2A 81.818 242 42 2 4525 4765 604987925 604988165 9.180000e-48 202.0
37 TraesCS3D01G008700 chr6D 77.128 376 59 14 1355 1703 13975334 13975709 5.520000e-45 193.0
38 TraesCS3D01G008700 chr6B 77.309 379 53 20 1358 1703 25557757 25557379 5.520000e-45 193.0
39 TraesCS3D01G008700 chr1D 78.238 193 28 9 1520 1700 473762726 473762536 1.590000e-20 111.0
40 TraesCS3D01G008700 chr1B 76.884 199 35 5 1520 1708 658739445 658739248 9.580000e-18 102.0
41 TraesCS3D01G008700 chr7D 84.483 58 9 0 184 241 17347288 17347231 2.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G008700 chr3D 3010938 3016342 5404 False 9982.000000 9982 100.00000 1 5405 1 chr3D.!!$F1 5404
1 TraesCS3D01G008700 chr3D 2998553 2999465 912 True 660.000000 660 79.87100 3503 4425 1 chr3D.!!$R1 922
2 TraesCS3D01G008700 chr3A 13690 18159 4469 True 2138.666667 4542 91.08100 727 5342 3 chr3A.!!$R1 4615
3 TraesCS3D01G008700 chr3A 63560 67748 4188 True 1971.333333 4506 90.82800 1057 5404 3 chr3A.!!$R3 4347
4 TraesCS3D01G008700 chr3A 40644 45924 5280 True 1823.000000 4342 91.95675 4 5404 4 chr3A.!!$R2 5400
5 TraesCS3D01G008700 chr3B 2472629 2478184 5555 False 1134.600000 3877 90.20400 424 5381 5 chr3B.!!$F1 4957
6 TraesCS3D01G008700 chr3B 2512429 2514738 2309 False 545.000000 654 79.20350 1962 4424 2 chr3B.!!$F3 2462
7 TraesCS3D01G008700 chr3B 2485104 2493436 8332 False 474.000000 643 81.66400 1258 4369 4 chr3B.!!$F2 3111
8 TraesCS3D01G008700 chr3B 3042317 3042955 638 True 457.000000 457 79.69000 1999 2640 1 chr3B.!!$R1 641
9 TraesCS3D01G008700 chrUn 308940403 308944345 3942 False 2849.000000 3589 92.90550 90 4195 2 chrUn.!!$F1 4105
10 TraesCS3D01G008700 chrUn 32132130 32135086 2956 True 466.000000 682 84.47850 1258 4372 2 chrUn.!!$R2 3114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 389 0.035317 AAGCAGCAACAGACGATGGA 59.965 50.000 0.0 0.0 0.00 3.41 F
364 390 0.251354 AGCAGCAACAGACGATGGAT 59.749 50.000 0.0 0.0 0.00 3.41 F
1335 7843 0.608856 TGGCTTCGCACCATGACATT 60.609 50.000 0.0 0.0 30.29 2.71 F
1971 8663 0.533755 CCGAGCCAATCACTCCCATC 60.534 60.000 0.0 0.0 0.00 3.51 F
2174 8971 0.980423 ACTGGAGTTTCTGAGGAGGC 59.020 55.000 0.0 0.0 0.00 4.70 F
2696 9525 1.069227 GCTCAAATGTTCCGGTGTGTC 60.069 52.381 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 8475 0.536460 CCGGCCGGCCTGTAAATAAT 60.536 55.0 41.01 0.00 0.00 1.28 R
1798 8490 0.974383 AATACTTATCTCCCGGCCGG 59.026 55.0 37.99 37.99 0.00 6.13 R
2155 8952 0.980423 GCCTCCTCAGAAACTCCAGT 59.020 55.0 0.00 0.00 0.00 4.00 R
3410 10378 0.321671 GCTAGTCCACTCTTGCCACA 59.678 55.0 0.00 0.00 31.97 4.17 R
3418 10386 0.461961 AATGGCTCGCTAGTCCACTC 59.538 55.0 4.03 0.00 33.54 3.51 R
4523 11521 0.031917 TCCCACTATGACCGGCCTTA 60.032 55.0 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.057969 TGATGTCACTGGATTCACACC 57.942 47.619 0.00 0.00 0.00 4.16
45 46 0.664761 GATTCACACCCCATGCATCG 59.335 55.000 0.00 0.00 0.00 3.84
54 55 0.679002 CCCATGCATCGATCCATCCC 60.679 60.000 0.00 0.00 0.00 3.85
87 88 4.524316 TTGAGATTCATGCCCTGTTTTG 57.476 40.909 0.00 0.00 0.00 2.44
88 89 3.499338 TGAGATTCATGCCCTGTTTTGT 58.501 40.909 0.00 0.00 0.00 2.83
89 90 3.896888 TGAGATTCATGCCCTGTTTTGTT 59.103 39.130 0.00 0.00 0.00 2.83
90 91 4.344679 TGAGATTCATGCCCTGTTTTGTTT 59.655 37.500 0.00 0.00 0.00 2.83
91 92 5.163322 TGAGATTCATGCCCTGTTTTGTTTT 60.163 36.000 0.00 0.00 0.00 2.43
92 93 5.683681 AGATTCATGCCCTGTTTTGTTTTT 58.316 33.333 0.00 0.00 0.00 1.94
202 204 9.927668 AGTTGAGATTTCTTTCTTGTTTCAAAA 57.072 25.926 0.00 0.00 0.00 2.44
261 263 6.094048 CCACTCCACTCTTATTTGTTGGTATG 59.906 42.308 0.00 0.00 0.00 2.39
262 264 5.648092 ACTCCACTCTTATTTGTTGGTATGC 59.352 40.000 0.00 0.00 0.00 3.14
264 266 6.007076 TCCACTCTTATTTGTTGGTATGCAA 58.993 36.000 0.00 0.00 0.00 4.08
312 316 5.123227 ACGAGAAAAAGACCTGATGAAACA 58.877 37.500 0.00 0.00 0.00 2.83
316 320 7.497925 AGAAAAAGACCTGATGAAACACTAC 57.502 36.000 0.00 0.00 0.00 2.73
323 327 4.750098 ACCTGATGAAACACTACGAAACAG 59.250 41.667 0.00 0.00 0.00 3.16
325 329 5.107453 CCTGATGAAACACTACGAAACAGAC 60.107 44.000 0.00 0.00 0.00 3.51
326 330 4.443063 TGATGAAACACTACGAAACAGACG 59.557 41.667 0.00 0.00 0.00 4.18
328 332 3.792956 TGAAACACTACGAAACAGACGAC 59.207 43.478 0.00 0.00 34.70 4.34
329 333 2.028287 ACACTACGAAACAGACGACG 57.972 50.000 0.00 0.00 34.70 5.12
331 335 1.707117 CACTACGAAACAGACGACGTG 59.293 52.381 4.58 0.00 39.28 4.49
332 336 1.324718 CTACGAAACAGACGACGTGG 58.675 55.000 4.58 0.00 39.28 4.94
334 338 1.947146 CGAAACAGACGACGTGGCA 60.947 57.895 4.58 0.00 0.00 4.92
335 339 1.282248 CGAAACAGACGACGTGGCAT 61.282 55.000 4.58 0.00 0.00 4.40
336 340 0.163788 GAAACAGACGACGTGGCATG 59.836 55.000 4.58 4.87 0.00 4.06
337 341 0.249699 AAACAGACGACGTGGCATGA 60.250 50.000 14.82 0.00 0.00 3.07
338 342 0.249699 AACAGACGACGTGGCATGAA 60.250 50.000 14.82 0.00 0.00 2.57
339 343 0.037326 ACAGACGACGTGGCATGAAT 60.037 50.000 14.82 0.00 0.00 2.57
340 344 0.647410 CAGACGACGTGGCATGAATC 59.353 55.000 14.82 7.53 0.00 2.52
346 372 3.370978 ACGACGTGGCATGAATCTTAAAG 59.629 43.478 14.82 0.00 0.00 1.85
354 380 4.487948 GCATGAATCTTAAAGCAGCAACA 58.512 39.130 0.00 0.00 0.00 3.33
358 384 4.083855 TGAATCTTAAAGCAGCAACAGACG 60.084 41.667 0.00 0.00 0.00 4.18
359 385 3.106242 TCTTAAAGCAGCAACAGACGA 57.894 42.857 0.00 0.00 0.00 4.20
360 386 3.664107 TCTTAAAGCAGCAACAGACGAT 58.336 40.909 0.00 0.00 0.00 3.73
361 387 3.433274 TCTTAAAGCAGCAACAGACGATG 59.567 43.478 0.00 0.00 0.00 3.84
362 388 0.877071 AAAGCAGCAACAGACGATGG 59.123 50.000 0.00 0.00 0.00 3.51
363 389 0.035317 AAGCAGCAACAGACGATGGA 59.965 50.000 0.00 0.00 0.00 3.41
364 390 0.251354 AGCAGCAACAGACGATGGAT 59.749 50.000 0.00 0.00 0.00 3.41
365 391 1.482182 AGCAGCAACAGACGATGGATA 59.518 47.619 0.00 0.00 0.00 2.59
366 392 1.594862 GCAGCAACAGACGATGGATAC 59.405 52.381 0.00 0.00 0.00 2.24
397 423 1.151668 ATATGATTTCTCTGCGCGGC 58.848 50.000 12.58 0.00 0.00 6.53
498 524 3.339141 TGCACGCATGTGGTATAAAAGA 58.661 40.909 11.65 0.00 46.51 2.52
658 1697 6.072112 TCAGTGAAAAACAATTGTAGAGGC 57.928 37.500 12.39 1.75 0.00 4.70
681 1720 3.042887 GTCGTTCAACAGGATTTTGTGC 58.957 45.455 0.00 0.00 0.00 4.57
701 1740 1.604278 CGTGTGTGTGTGAGAGAGAGA 59.396 52.381 0.00 0.00 0.00 3.10
702 1741 2.350293 CGTGTGTGTGTGAGAGAGAGAG 60.350 54.545 0.00 0.00 0.00 3.20
703 1742 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
704 1743 3.058293 GTGTGTGTGTGAGAGAGAGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
706 1745 3.436704 GTGTGTGTGAGAGAGAGAGAGAG 59.563 52.174 0.00 0.00 0.00 3.20
707 1746 3.326297 TGTGTGTGAGAGAGAGAGAGAGA 59.674 47.826 0.00 0.00 0.00 3.10
708 1747 3.935203 GTGTGTGAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
709 1748 3.837731 TGTGTGAGAGAGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
710 1749 4.081476 TGTGTGAGAGAGAGAGAGAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
712 1751 4.964897 TGTGAGAGAGAGAGAGAGAGAGAT 59.035 45.833 0.00 0.00 0.00 2.75
713 1752 5.163374 TGTGAGAGAGAGAGAGAGAGAGATG 60.163 48.000 0.00 0.00 0.00 2.90
715 1754 5.069648 TGAGAGAGAGAGAGAGAGAGATGAC 59.930 48.000 0.00 0.00 0.00 3.06
716 1755 5.215069 AGAGAGAGAGAGAGAGAGATGACT 58.785 45.833 0.00 0.00 0.00 3.41
719 1758 7.345653 AGAGAGAGAGAGAGAGAGATGACTTAA 59.654 40.741 0.00 0.00 0.00 1.85
721 1760 8.153550 AGAGAGAGAGAGAGAGATGACTTAATC 58.846 40.741 0.00 0.00 0.00 1.75
722 1761 7.805163 AGAGAGAGAGAGAGATGACTTAATCA 58.195 38.462 0.00 0.00 43.13 2.57
725 1764 8.853126 AGAGAGAGAGAGATGACTTAATCAATG 58.147 37.037 0.00 0.00 41.93 2.82
757 1829 3.730215 ACCACCACATGCCAATTAGTA 57.270 42.857 0.00 0.00 0.00 1.82
794 1867 4.487714 TCAATGCTTACCTTACCTCTGG 57.512 45.455 0.00 0.00 0.00 3.86
812 1885 3.585289 TCTGGGTTATTGACTTGGCTACA 59.415 43.478 0.00 0.00 0.00 2.74
819 1892 3.769739 TTGACTTGGCTACACATGTCT 57.230 42.857 0.00 0.00 42.63 3.41
935 2008 0.951040 AGAAGGCTCGTTTGCTTCGG 60.951 55.000 0.00 0.00 0.00 4.30
1032 2117 3.526931 ACTCGAGTACCCATCACATTG 57.473 47.619 18.46 0.00 0.00 2.82
1114 2199 2.105128 GCTCATCGCCGTGTAGCT 59.895 61.111 0.00 0.00 0.00 3.32
1210 2295 1.065401 TCAAGCAAGCAAGTTTCCGTG 59.935 47.619 0.00 0.00 0.00 4.94
1335 7843 0.608856 TGGCTTCGCACCATGACATT 60.609 50.000 0.00 0.00 30.29 2.71
1369 7877 3.261897 TCTCGGAAGCAAGGAAGAATCTT 59.738 43.478 0.00 0.00 0.00 2.40
1374 7882 2.880443 AGCAAGGAAGAATCTTTGGCA 58.120 42.857 0.00 0.00 41.56 4.92
1512 8027 3.306917 TGCCTTGCATGACAATTTCTG 57.693 42.857 0.00 0.00 37.72 3.02
1703 8371 7.781548 GTGATTGACACCGGTTAGTATTTAT 57.218 36.000 2.97 0.00 43.05 1.40
1704 8372 7.848491 GTGATTGACACCGGTTAGTATTTATC 58.152 38.462 2.97 3.22 43.05 1.75
1705 8373 7.709613 GTGATTGACACCGGTTAGTATTTATCT 59.290 37.037 2.97 0.00 43.05 1.98
1706 8374 8.916062 TGATTGACACCGGTTAGTATTTATCTA 58.084 33.333 2.97 0.00 0.00 1.98
1733 8401 9.452287 TTTATCAGTTACCACTTAATTACCACC 57.548 33.333 0.00 0.00 0.00 4.61
1734 8402 6.436738 TCAGTTACCACTTAATTACCACCA 57.563 37.500 0.00 0.00 0.00 4.17
1735 8403 6.232692 TCAGTTACCACTTAATTACCACCAC 58.767 40.000 0.00 0.00 0.00 4.16
1736 8404 5.413523 CAGTTACCACTTAATTACCACCACC 59.586 44.000 0.00 0.00 0.00 4.61
1758 8447 6.765036 CACCTGGTCTCATATCAATATATGCC 59.235 42.308 0.00 0.00 43.19 4.40
1759 8448 6.444816 ACCTGGTCTCATATCAATATATGCCA 59.555 38.462 0.00 0.00 43.19 4.92
1760 8449 7.128418 ACCTGGTCTCATATCAATATATGCCAT 59.872 37.037 0.00 0.00 43.19 4.40
1761 8450 7.444487 CCTGGTCTCATATCAATATATGCCATG 59.556 40.741 0.00 0.00 43.19 3.66
1762 8451 6.769341 TGGTCTCATATCAATATATGCCATGC 59.231 38.462 0.00 0.00 43.19 4.06
1763 8452 6.769341 GGTCTCATATCAATATATGCCATGCA 59.231 38.462 0.00 0.00 43.19 3.96
1781 8470 9.478768 TGCCATGCATATGTTTAATTTAATCTG 57.521 29.630 0.00 0.00 31.71 2.90
1803 8495 3.442625 GGATAATTATTTACAGGCCGGCC 59.557 47.826 39.29 39.29 0.00 6.13
1805 8497 0.536460 ATTATTTACAGGCCGGCCGG 60.536 55.000 39.52 39.52 41.95 6.13
1813 8505 4.315941 GGCCGGCCGGGAGATAAG 62.316 72.222 43.31 17.82 38.47 1.73
1818 8510 1.346722 CCGGCCGGGAGATAAGTATTT 59.653 52.381 37.42 0.00 38.47 1.40
1819 8511 2.224450 CCGGCCGGGAGATAAGTATTTT 60.224 50.000 37.42 0.00 38.47 1.82
1820 8512 3.473625 CGGCCGGGAGATAAGTATTTTT 58.526 45.455 20.10 0.00 0.00 1.94
1821 8513 4.503643 CCGGCCGGGAGATAAGTATTTTTA 60.504 45.833 37.42 0.00 38.47 1.52
1822 8514 5.058490 CGGCCGGGAGATAAGTATTTTTAA 58.942 41.667 20.10 0.00 0.00 1.52
1826 8518 9.070179 GGCCGGGAGATAAGTATTTTTAATTAA 57.930 33.333 2.18 0.00 0.00 1.40
1827 8519 9.888878 GCCGGGAGATAAGTATTTTTAATTAAC 57.111 33.333 2.18 0.00 0.00 2.01
1864 8556 9.599866 TTTCTGATCATACATAAGAATTCACGT 57.400 29.630 8.44 1.57 0.00 4.49
1865 8557 9.599866 TTCTGATCATACATAAGAATTCACGTT 57.400 29.630 8.44 0.00 0.00 3.99
1868 8560 9.034544 TGATCATACATAAGAATTCACGTTCAG 57.965 33.333 8.44 0.00 0.00 3.02
1885 8577 6.252441 CACGTTCAGTGCAAAATTGTTAAGAA 59.748 34.615 0.00 0.00 44.72 2.52
1886 8578 6.978080 ACGTTCAGTGCAAAATTGTTAAGAAT 59.022 30.769 0.00 0.00 0.00 2.40
1887 8579 7.491048 ACGTTCAGTGCAAAATTGTTAAGAATT 59.509 29.630 4.81 4.81 0.00 2.17
1888 8580 8.327429 CGTTCAGTGCAAAATTGTTAAGAATTT 58.673 29.630 15.52 15.52 37.16 1.82
1915 8607 6.653526 TTTTTGATATGATGGCCATCGATT 57.346 33.333 34.70 25.25 40.63 3.34
1916 8608 5.632244 TTTGATATGATGGCCATCGATTG 57.368 39.130 34.70 0.00 40.63 2.67
1930 8622 5.902681 CCATCGATTGGTAGTTGACTAAGA 58.097 41.667 0.00 0.00 40.99 2.10
1931 8623 5.980116 CCATCGATTGGTAGTTGACTAAGAG 59.020 44.000 0.00 0.00 40.99 2.85
1932 8624 4.995124 TCGATTGGTAGTTGACTAAGAGC 58.005 43.478 0.00 0.00 31.22 4.09
1933 8625 4.461431 TCGATTGGTAGTTGACTAAGAGCA 59.539 41.667 0.00 0.00 31.22 4.26
1971 8663 0.533755 CCGAGCCAATCACTCCCATC 60.534 60.000 0.00 0.00 0.00 3.51
1985 8775 3.011708 ACTCCCATCTTAATTTGGCACCT 59.988 43.478 0.00 0.00 0.00 4.00
2152 8949 4.764336 TCGGCGCACGGTTCTACG 62.764 66.667 10.83 0.00 44.45 3.51
2155 8952 2.429571 GCGCACGGTTCTACGACA 60.430 61.111 0.30 0.00 37.61 4.35
2157 8954 1.081641 CGCACGGTTCTACGACACT 60.082 57.895 0.00 0.00 37.61 3.55
2174 8971 0.980423 ACTGGAGTTTCTGAGGAGGC 59.020 55.000 0.00 0.00 0.00 4.70
2655 9452 6.261603 TGGTAAGTATACGTGTATGACTGAGG 59.738 42.308 0.00 0.00 32.51 3.86
2659 9456 7.584122 AGTATACGTGTATGACTGAGGAAAT 57.416 36.000 0.00 0.00 0.00 2.17
2696 9525 1.069227 GCTCAAATGTTCCGGTGTGTC 60.069 52.381 0.00 0.00 0.00 3.67
2736 9565 3.084039 CAAACTCTGCCTGGCTATTTCA 58.916 45.455 21.03 0.00 0.00 2.69
2828 9667 5.401674 CCTTGTGTCAGACGAGTAAGTAAAC 59.598 44.000 0.00 0.00 34.50 2.01
2851 9725 9.636789 AAACCAAGTTACCTGTTAGTTCTTTAT 57.363 29.630 0.00 0.00 0.00 1.40
2899 9835 6.638063 TCTGACGCAGATTTCATTTTTCTTTG 59.362 34.615 5.59 0.00 35.39 2.77
2945 9882 2.025037 TCTTAATGCCACTGCCAAGGAT 60.025 45.455 0.00 0.00 36.33 3.24
3403 10371 6.426937 CCCCGAAATTATCAAGGTACATACAG 59.573 42.308 0.00 0.00 0.00 2.74
3418 10386 5.627499 ACATACAGTACAAATGTGGCAAG 57.373 39.130 6.88 0.00 32.74 4.01
3443 10413 2.419574 GGACTAGCGAGCCATTACCAAA 60.420 50.000 0.00 0.00 0.00 3.28
3683 10653 1.766494 TCATAACCTCCGGTAAGCGA 58.234 50.000 0.00 0.00 33.12 4.93
3703 10673 2.440796 TGCAGCTAGCCATTGCCC 60.441 61.111 20.87 0.27 44.83 5.36
3714 10684 1.202903 GCCATTGCCCTGAGATCATCT 60.203 52.381 0.00 0.00 0.00 2.90
3735 10725 4.838423 TCTGATTCCTAGTTCACCAGTTCA 59.162 41.667 0.00 0.00 0.00 3.18
3931 10923 1.105167 TCGATCCCCGCGACTACAAT 61.105 55.000 8.23 0.00 38.37 2.71
4180 11172 3.044986 CAACGCCATGAACAAAGTTCAG 58.955 45.455 16.47 6.72 0.00 3.02
4286 11278 2.507484 CTGTGAGGATTCCTGTTGCAA 58.493 47.619 10.74 0.00 31.76 4.08
4375 11372 6.335777 ACAGGAAATTATGCTCTTGATTTGC 58.664 36.000 0.00 0.00 32.24 3.68
4502 11500 8.304596 TCGGAAGGCATTACTTATGATACTTAG 58.695 37.037 0.00 0.00 36.26 2.18
4507 11505 6.371825 GGCATTACTTATGATACTTAGCCACC 59.628 42.308 0.00 0.00 36.26 4.61
4508 11506 6.934645 GCATTACTTATGATACTTAGCCACCA 59.065 38.462 0.00 0.00 36.26 4.17
4512 11510 3.685139 ATGATACTTAGCCACCATCCG 57.315 47.619 0.00 0.00 0.00 4.18
4513 11511 1.070134 TGATACTTAGCCACCATCCGC 59.930 52.381 0.00 0.00 0.00 5.54
4514 11512 1.070134 GATACTTAGCCACCATCCGCA 59.930 52.381 0.00 0.00 0.00 5.69
4515 11513 0.177141 TACTTAGCCACCATCCGCAC 59.823 55.000 0.00 0.00 0.00 5.34
4516 11514 1.078497 CTTAGCCACCATCCGCACA 60.078 57.895 0.00 0.00 0.00 4.57
4517 11515 1.078497 TTAGCCACCATCCGCACAG 60.078 57.895 0.00 0.00 0.00 3.66
4518 11516 1.549243 TTAGCCACCATCCGCACAGA 61.549 55.000 0.00 0.00 0.00 3.41
4519 11517 1.337384 TAGCCACCATCCGCACAGAT 61.337 55.000 0.00 0.00 0.00 2.90
4520 11518 2.475466 GCCACCATCCGCACAGATG 61.475 63.158 2.20 2.20 42.79 2.90
4521 11519 1.221566 CCACCATCCGCACAGATGA 59.778 57.895 9.35 0.00 45.43 2.92
4522 11520 1.091771 CCACCATCCGCACAGATGAC 61.092 60.000 9.35 0.00 45.43 3.06
4523 11521 0.107993 CACCATCCGCACAGATGACT 60.108 55.000 9.35 0.00 45.43 3.41
4524 11522 1.136891 CACCATCCGCACAGATGACTA 59.863 52.381 9.35 0.00 45.43 2.59
4525 11523 1.831106 ACCATCCGCACAGATGACTAA 59.169 47.619 9.35 0.00 45.43 2.24
4526 11524 2.159043 ACCATCCGCACAGATGACTAAG 60.159 50.000 9.35 0.00 45.43 2.18
4527 11525 2.477825 CATCCGCACAGATGACTAAGG 58.522 52.381 2.93 0.00 45.43 2.69
4528 11526 0.175760 TCCGCACAGATGACTAAGGC 59.824 55.000 0.00 0.00 0.00 4.35
4529 11527 0.811616 CCGCACAGATGACTAAGGCC 60.812 60.000 0.00 0.00 0.00 5.19
4530 11528 1.148157 CGCACAGATGACTAAGGCCG 61.148 60.000 0.00 0.00 0.00 6.13
4597 11595 1.386533 AGTCTGCTTATGTGGCATGC 58.613 50.000 9.90 9.90 39.07 4.06
4620 11618 5.350091 GCAGTTAATGAGAAGAGAGGTGTTC 59.650 44.000 0.00 0.00 0.00 3.18
4628 11626 8.602472 ATGAGAAGAGAGGTGTTCTAAGTAAT 57.398 34.615 0.00 0.00 36.45 1.89
4726 11724 9.656323 TTACACTATCTCTATGTTACTCCCAAT 57.344 33.333 0.00 0.00 0.00 3.16
4765 11763 7.600960 ACATAGACTAGTGTCATATGCATGAG 58.399 38.462 10.16 1.23 45.20 2.90
4766 11764 4.880759 AGACTAGTGTCATATGCATGAGC 58.119 43.478 10.16 0.00 45.20 4.26
4804 11832 3.608506 CGGATAGAGTGTTGACAAGAACG 59.391 47.826 0.00 0.00 0.00 3.95
4957 12027 5.536554 TTTCTTGATCGAAAGACATCTGC 57.463 39.130 0.00 0.00 46.97 4.26
4972 12087 0.036010 TCTGCTGGCTTGGCTTACTC 60.036 55.000 0.00 0.00 0.00 2.59
4975 12090 1.685224 CTGGCTTGGCTTACTCCCA 59.315 57.895 0.00 0.00 0.00 4.37
4976 12091 0.038166 CTGGCTTGGCTTACTCCCAA 59.962 55.000 0.00 0.00 39.91 4.12
4988 12103 5.110598 GCTTACTCCCAAACTAGCTTCTAC 58.889 45.833 0.00 0.00 0.00 2.59
4990 12105 6.574662 GCTTACTCCCAAACTAGCTTCTACTT 60.575 42.308 0.00 0.00 0.00 2.24
5000 12115 6.552445 ACTAGCTTCTACTTGATGGAATGT 57.448 37.500 0.00 0.00 0.00 2.71
5005 12120 6.072286 AGCTTCTACTTGATGGAATGTGTTTG 60.072 38.462 0.00 0.00 0.00 2.93
5062 12177 7.553881 ACTTACATGTGCCTTATAATGTCAC 57.446 36.000 9.11 7.72 35.07 3.67
5064 12179 7.495934 ACTTACATGTGCCTTATAATGTCACTC 59.504 37.037 9.11 0.00 35.07 3.51
5070 12185 5.986135 GTGCCTTATAATGTCACTCGATTCT 59.014 40.000 0.00 0.00 0.00 2.40
5077 12192 3.156511 TGTCACTCGATTCTCTCATGC 57.843 47.619 0.00 0.00 0.00 4.06
5083 12198 1.400494 TCGATTCTCTCATGCGTCGAA 59.600 47.619 0.00 0.00 35.48 3.71
5085 12200 2.791560 CGATTCTCTCATGCGTCGAATT 59.208 45.455 0.00 0.00 0.00 2.17
5086 12201 3.121529 CGATTCTCTCATGCGTCGAATTC 60.122 47.826 0.00 0.00 0.00 2.17
5093 12208 2.094752 TCATGCGTCGAATTCTCTCACA 60.095 45.455 3.52 0.00 0.00 3.58
5130 12245 3.758931 GGCACAATCGGGGCCAAC 61.759 66.667 4.39 0.00 46.92 3.77
5131 12246 2.988684 GCACAATCGGGGCCAACA 60.989 61.111 4.39 0.00 0.00 3.33
5132 12247 2.569354 GCACAATCGGGGCCAACAA 61.569 57.895 4.39 0.00 0.00 2.83
5134 12249 0.607620 CACAATCGGGGCCAACAATT 59.392 50.000 4.39 0.00 0.00 2.32
5135 12250 0.894835 ACAATCGGGGCCAACAATTC 59.105 50.000 4.39 0.00 0.00 2.17
5136 12251 0.175531 CAATCGGGGCCAACAATTCC 59.824 55.000 4.39 0.00 0.00 3.01
5137 12252 0.041090 AATCGGGGCCAACAATTCCT 59.959 50.000 4.39 0.00 0.00 3.36
5138 12253 0.041090 ATCGGGGCCAACAATTCCTT 59.959 50.000 4.39 0.00 0.00 3.36
5139 12254 0.897863 TCGGGGCCAACAATTCCTTG 60.898 55.000 4.39 0.00 38.39 3.61
5140 12255 0.897863 CGGGGCCAACAATTCCTTGA 60.898 55.000 4.39 0.00 36.20 3.02
5141 12256 1.571955 GGGGCCAACAATTCCTTGAT 58.428 50.000 4.39 0.00 36.20 2.57
5142 12257 2.745968 GGGGCCAACAATTCCTTGATA 58.254 47.619 4.39 0.00 36.20 2.15
5143 12258 3.308401 GGGGCCAACAATTCCTTGATAT 58.692 45.455 4.39 0.00 36.20 1.63
5144 12259 3.711190 GGGGCCAACAATTCCTTGATATT 59.289 43.478 4.39 0.00 36.20 1.28
5145 12260 4.443315 GGGGCCAACAATTCCTTGATATTG 60.443 45.833 4.39 0.00 37.67 1.90
5146 12261 4.443315 GGGCCAACAATTCCTTGATATTGG 60.443 45.833 4.39 0.00 36.34 3.16
5147 12262 4.405358 GGCCAACAATTCCTTGATATTGGA 59.595 41.667 0.00 0.00 36.34 3.53
5148 12263 5.452356 GGCCAACAATTCCTTGATATTGGAG 60.452 44.000 0.00 0.00 36.34 3.86
5149 12264 5.452356 GCCAACAATTCCTTGATATTGGAGG 60.452 44.000 4.32 0.00 36.34 4.30
5150 12265 5.658190 CCAACAATTCCTTGATATTGGAGGT 59.342 40.000 0.00 0.00 36.34 3.85
5151 12266 6.833416 CCAACAATTCCTTGATATTGGAGGTA 59.167 38.462 0.00 0.00 36.34 3.08
5152 12267 7.013655 CCAACAATTCCTTGATATTGGAGGTAG 59.986 40.741 0.00 0.00 36.34 3.18
5153 12268 7.451731 ACAATTCCTTGATATTGGAGGTAGA 57.548 36.000 0.00 0.00 36.34 2.59
5174 12289 1.743394 TCTGATGTGTAGATCGCGTGT 59.257 47.619 5.77 0.00 0.00 4.49
5210 12344 4.083003 TCGATGTGGCCAATACTTTGAAAC 60.083 41.667 7.24 0.00 34.60 2.78
5261 12395 2.315176 TGGTCCCATTTGGTCAAACTG 58.685 47.619 0.00 0.10 32.51 3.16
5295 12429 1.479323 GCGGTGGGAGAGTTATGTACA 59.521 52.381 0.00 0.00 0.00 2.90
5381 12515 7.876068 TCTTAGTTTAGTGTTAACCTCCACATG 59.124 37.037 2.48 0.00 33.99 3.21
5382 12516 5.937111 AGTTTAGTGTTAACCTCCACATGT 58.063 37.500 2.48 0.00 33.99 3.21
5383 12517 5.763204 AGTTTAGTGTTAACCTCCACATGTG 59.237 40.000 19.31 19.31 33.99 3.21
5404 12538 6.148948 TGTGTACATTATTTGTGAAAGCAGC 58.851 36.000 0.00 0.00 39.48 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.094464 CAGTGACATCATACATGTCCATTGTT 59.906 38.462 0.00 0.00 45.70 2.83
1 2 5.587443 CAGTGACATCATACATGTCCATTGT 59.413 40.000 0.00 2.67 45.70 2.71
2 3 5.008316 CCAGTGACATCATACATGTCCATTG 59.992 44.000 0.00 0.00 45.70 2.82
19 20 0.400213 TGGGGTGTGAATCCAGTGAC 59.600 55.000 0.00 0.00 0.00 3.67
21 22 1.466856 CATGGGGTGTGAATCCAGTG 58.533 55.000 0.00 0.00 33.68 3.66
35 36 0.679002 GGGATGGATCGATGCATGGG 60.679 60.000 33.42 0.00 39.04 4.00
45 46 0.036875 GGAACGATGGGGGATGGATC 59.963 60.000 0.00 0.00 0.00 3.36
54 55 3.609853 TGAATCTCAAAGGAACGATGGG 58.390 45.455 0.00 0.00 0.00 4.00
91 92 8.553459 TGAAACAAGATAAACTTTGCCAAAAA 57.447 26.923 0.00 0.00 36.61 1.94
92 93 8.553459 TTGAAACAAGATAAACTTTGCCAAAA 57.447 26.923 0.00 0.00 36.61 2.44
93 94 8.553459 TTTGAAACAAGATAAACTTTGCCAAA 57.447 26.923 0.00 0.00 36.61 3.28
94 95 8.553459 TTTTGAAACAAGATAAACTTTGCCAA 57.447 26.923 0.00 0.00 36.61 4.52
227 229 8.887717 CAAATAAGAGTGGAGTGGATTTTCTAG 58.112 37.037 0.00 0.00 0.00 2.43
277 279 8.148999 AGGTCTTTTTCTCGTTTCTAAGTGTAT 58.851 33.333 0.00 0.00 0.00 2.29
285 287 5.611374 TCATCAGGTCTTTTTCTCGTTTCT 58.389 37.500 0.00 0.00 0.00 2.52
286 288 5.924475 TCATCAGGTCTTTTTCTCGTTTC 57.076 39.130 0.00 0.00 0.00 2.78
290 292 5.237344 AGTGTTTCATCAGGTCTTTTTCTCG 59.763 40.000 0.00 0.00 0.00 4.04
291 293 6.625873 AGTGTTTCATCAGGTCTTTTTCTC 57.374 37.500 0.00 0.00 0.00 2.87
299 303 4.748102 TGTTTCGTAGTGTTTCATCAGGTC 59.252 41.667 0.00 0.00 0.00 3.85
312 316 1.334419 CCACGTCGTCTGTTTCGTAGT 60.334 52.381 0.00 0.00 35.13 2.73
316 320 1.282248 ATGCCACGTCGTCTGTTTCG 61.282 55.000 0.00 0.00 0.00 3.46
323 327 1.359848 AAGATTCATGCCACGTCGTC 58.640 50.000 0.00 0.00 0.00 4.20
325 329 3.785505 GCTTTAAGATTCATGCCACGTCG 60.786 47.826 0.00 0.00 0.00 5.12
326 330 3.126858 TGCTTTAAGATTCATGCCACGTC 59.873 43.478 0.00 0.00 0.00 4.34
328 332 3.688272 CTGCTTTAAGATTCATGCCACG 58.312 45.455 0.00 0.00 0.00 4.94
329 333 3.119388 TGCTGCTTTAAGATTCATGCCAC 60.119 43.478 0.00 0.00 0.00 5.01
331 335 3.788333 TGCTGCTTTAAGATTCATGCC 57.212 42.857 0.00 0.00 0.00 4.40
332 336 4.487948 TGTTGCTGCTTTAAGATTCATGC 58.512 39.130 0.00 0.00 0.00 4.06
334 338 5.391310 CGTCTGTTGCTGCTTTAAGATTCAT 60.391 40.000 0.00 0.00 0.00 2.57
335 339 4.083855 CGTCTGTTGCTGCTTTAAGATTCA 60.084 41.667 0.00 0.00 0.00 2.57
336 340 4.152402 TCGTCTGTTGCTGCTTTAAGATTC 59.848 41.667 0.00 0.00 0.00 2.52
337 341 4.065088 TCGTCTGTTGCTGCTTTAAGATT 58.935 39.130 0.00 0.00 0.00 2.40
338 342 3.664107 TCGTCTGTTGCTGCTTTAAGAT 58.336 40.909 0.00 0.00 0.00 2.40
339 343 3.106242 TCGTCTGTTGCTGCTTTAAGA 57.894 42.857 0.00 0.00 0.00 2.10
340 344 3.425359 CCATCGTCTGTTGCTGCTTTAAG 60.425 47.826 0.00 0.00 0.00 1.85
346 372 1.594862 GTATCCATCGTCTGTTGCTGC 59.405 52.381 0.00 0.00 0.00 5.25
354 380 4.341366 TTCATGCATGTATCCATCGTCT 57.659 40.909 25.43 0.00 0.00 4.18
365 391 9.529325 CAGAGAAATCATATTTTTCATGCATGT 57.471 29.630 25.43 9.20 35.90 3.21
366 392 8.487970 GCAGAGAAATCATATTTTTCATGCATG 58.512 33.333 21.07 21.07 42.04 4.06
367 393 7.381408 CGCAGAGAAATCATATTTTTCATGCAT 59.619 33.333 22.07 0.00 42.28 3.96
368 394 6.693978 CGCAGAGAAATCATATTTTTCATGCA 59.306 34.615 22.07 0.00 42.28 3.96
369 395 6.345565 GCGCAGAGAAATCATATTTTTCATGC 60.346 38.462 0.30 17.60 40.68 4.06
370 396 6.129535 CGCGCAGAGAAATCATATTTTTCATG 60.130 38.462 8.75 8.56 35.90 3.07
371 397 5.911280 CGCGCAGAGAAATCATATTTTTCAT 59.089 36.000 8.75 0.00 35.90 2.57
372 398 5.265477 CGCGCAGAGAAATCATATTTTTCA 58.735 37.500 8.75 0.00 35.90 2.69
373 399 4.672413 CCGCGCAGAGAAATCATATTTTTC 59.328 41.667 8.75 1.29 34.08 2.29
404 430 2.479198 GCGCCGGTCAAGCTTTAC 59.521 61.111 1.90 0.00 0.00 2.01
406 432 4.980805 TCGCGCCGGTCAAGCTTT 62.981 61.111 1.90 0.00 0.00 3.51
498 524 5.471556 TTCAGCCAAATCATGTCAAACAT 57.528 34.783 0.00 0.00 39.91 2.71
515 541 2.498167 TCTCCAGTTGAAAGCTTCAGC 58.502 47.619 0.00 2.06 41.38 4.26
572 604 3.144506 CATGCCCAGTTCAGACATATCC 58.855 50.000 0.00 0.00 0.00 2.59
618 1417 7.912056 TTCACTGATAATTCCTGAACTTGAG 57.088 36.000 0.00 0.00 0.00 3.02
633 1432 7.446931 TGCCTCTACAATTGTTTTTCACTGATA 59.553 33.333 17.78 0.00 0.00 2.15
658 1697 4.282068 CACAAAATCCTGTTGAACGACTG 58.718 43.478 0.00 0.00 0.00 3.51
681 1720 1.604278 TCTCTCTCTCACACACACACG 59.396 52.381 0.00 0.00 0.00 4.49
701 1740 7.288389 AGCATTGATTAAGTCATCTCTCTCTCT 59.712 37.037 0.00 0.00 36.54 3.10
702 1741 7.436118 AGCATTGATTAAGTCATCTCTCTCTC 58.564 38.462 0.00 0.00 36.54 3.20
703 1742 7.364149 AGCATTGATTAAGTCATCTCTCTCT 57.636 36.000 0.00 0.00 36.54 3.10
704 1743 8.436046 AAAGCATTGATTAAGTCATCTCTCTC 57.564 34.615 0.00 0.00 36.54 3.20
706 1745 8.281893 GCTAAAGCATTGATTAAGTCATCTCTC 58.718 37.037 0.00 0.00 41.59 3.20
707 1746 7.042187 CGCTAAAGCATTGATTAAGTCATCTCT 60.042 37.037 2.44 0.00 42.21 3.10
708 1747 7.068341 CGCTAAAGCATTGATTAAGTCATCTC 58.932 38.462 2.44 0.00 42.21 2.75
709 1748 6.540189 ACGCTAAAGCATTGATTAAGTCATCT 59.460 34.615 2.44 0.00 42.21 2.90
710 1749 6.719365 ACGCTAAAGCATTGATTAAGTCATC 58.281 36.000 2.44 0.00 42.21 2.92
712 1751 6.494893 AACGCTAAAGCATTGATTAAGTCA 57.505 33.333 2.44 0.00 42.21 3.41
713 1752 7.428472 GGTTAACGCTAAAGCATTGATTAAGTC 59.572 37.037 2.44 0.00 42.21 3.01
715 1754 7.218204 GTGGTTAACGCTAAAGCATTGATTAAG 59.782 37.037 2.44 0.00 42.21 1.85
716 1755 7.024768 GTGGTTAACGCTAAAGCATTGATTAA 58.975 34.615 2.44 0.00 42.21 1.40
719 1758 4.142469 GGTGGTTAACGCTAAAGCATTGAT 60.142 41.667 2.44 0.00 42.21 2.57
721 1760 3.057876 TGGTGGTTAACGCTAAAGCATTG 60.058 43.478 2.44 0.00 42.21 2.82
722 1761 3.057806 GTGGTGGTTAACGCTAAAGCATT 60.058 43.478 2.44 0.00 42.21 3.56
725 1764 1.874872 TGTGGTGGTTAACGCTAAAGC 59.125 47.619 0.00 0.00 37.78 3.51
794 1867 4.700213 ACATGTGTAGCCAAGTCAATAACC 59.300 41.667 0.00 0.00 0.00 2.85
812 1885 3.782523 ACCTACCATTGATCCAGACATGT 59.217 43.478 0.00 0.00 0.00 3.21
819 1892 2.126882 CCCTGACCTACCATTGATCCA 58.873 52.381 0.00 0.00 0.00 3.41
935 2008 6.437477 ACCATCACCTCTTTTATTCCCTTTTC 59.563 38.462 0.00 0.00 0.00 2.29
1032 2117 4.437930 GCTTGGTTCTGAGATGTAATGTGC 60.438 45.833 0.00 0.00 0.00 4.57
1104 2189 3.431725 GCACCCAAGCTACACGGC 61.432 66.667 0.00 0.00 0.00 5.68
1114 2199 1.336632 AAAGGCAAAGCAGCACCCAA 61.337 50.000 0.00 0.00 35.83 4.12
1149 2234 0.176449 TGATGATCCTCCGTGCACTG 59.824 55.000 16.19 8.86 0.00 3.66
1210 2295 6.452242 CAAAGGTGGGTTAACTAATTGAACC 58.548 40.000 5.42 3.70 41.66 3.62
1254 2364 9.263446 AGGTAAACTATGTAGACCTAAACATGA 57.737 33.333 0.00 0.00 38.77 3.07
1335 7843 2.163509 CTTCCGAGAAGAGTGGTGAGA 58.836 52.381 7.62 0.00 0.00 3.27
1369 7877 2.158682 AGTTGTACACCACAGATGCCAA 60.159 45.455 0.00 0.00 38.72 4.52
1374 7882 4.202315 TGCTTGTAGTTGTACACCACAGAT 60.202 41.667 0.00 0.00 38.95 2.90
1474 7982 3.686726 AGGCAAAACTGATCGAGATGTTC 59.313 43.478 0.00 0.00 0.00 3.18
1512 8027 3.062042 TCTGCACGCATCACATCATATC 58.938 45.455 0.00 0.00 0.00 1.63
1648 8289 2.100989 ACATCCTCTCCGTAGTTGGTC 58.899 52.381 0.00 0.00 0.00 4.02
1708 8376 8.604184 TGGTGGTAATTAAGTGGTAACTGATAA 58.396 33.333 0.00 0.00 36.51 1.75
1709 8377 8.042515 GTGGTGGTAATTAAGTGGTAACTGATA 58.957 37.037 0.00 0.00 36.51 2.15
1710 8378 6.882678 GTGGTGGTAATTAAGTGGTAACTGAT 59.117 38.462 0.00 0.00 36.51 2.90
1711 8379 6.232692 GTGGTGGTAATTAAGTGGTAACTGA 58.767 40.000 0.00 0.00 36.51 3.41
1712 8380 5.413523 GGTGGTGGTAATTAAGTGGTAACTG 59.586 44.000 0.00 0.00 36.51 3.16
1713 8381 5.311385 AGGTGGTGGTAATTAAGTGGTAACT 59.689 40.000 0.00 0.00 38.71 2.24
1714 8382 5.413523 CAGGTGGTGGTAATTAAGTGGTAAC 59.586 44.000 0.00 0.00 0.00 2.50
1715 8383 5.515184 CCAGGTGGTGGTAATTAAGTGGTAA 60.515 44.000 0.00 0.00 42.17 2.85
1716 8384 4.019141 CCAGGTGGTGGTAATTAAGTGGTA 60.019 45.833 0.00 0.00 42.17 3.25
1733 8401 6.765036 GGCATATATTGATATGAGACCAGGTG 59.235 42.308 0.00 0.00 45.46 4.00
1734 8402 6.444816 TGGCATATATTGATATGAGACCAGGT 59.555 38.462 8.74 0.00 45.46 4.00
1735 8403 6.892485 TGGCATATATTGATATGAGACCAGG 58.108 40.000 8.74 0.00 45.46 4.45
1736 8404 7.041303 GCATGGCATATATTGATATGAGACCAG 60.041 40.741 0.00 3.71 45.46 4.00
1777 8466 6.180472 CCGGCCTGTAAATAATTATCCAGAT 58.820 40.000 15.85 0.00 0.00 2.90
1779 8468 4.156008 GCCGGCCTGTAAATAATTATCCAG 59.844 45.833 18.11 5.76 0.00 3.86
1781 8470 3.442625 GGCCGGCCTGTAAATAATTATCC 59.557 47.826 38.76 4.74 0.00 2.59
1783 8472 3.078837 CGGCCGGCCTGTAAATAATTAT 58.921 45.455 41.01 0.00 0.00 1.28
1785 8474 1.314730 CGGCCGGCCTGTAAATAATT 58.685 50.000 41.01 0.00 0.00 1.40
1786 8475 0.536460 CCGGCCGGCCTGTAAATAAT 60.536 55.000 41.01 0.00 0.00 1.28
1787 8476 1.153127 CCGGCCGGCCTGTAAATAA 60.153 57.895 41.01 0.00 0.00 1.40
1789 8481 4.499633 CCCGGCCGGCCTGTAAAT 62.500 66.667 41.01 0.00 0.00 1.40
1795 8487 4.872574 TTATCTCCCGGCCGGCCT 62.873 66.667 41.01 25.03 0.00 5.19
1796 8488 4.315941 CTTATCTCCCGGCCGGCC 62.316 72.222 39.46 36.69 0.00 6.13
1798 8490 0.974383 AATACTTATCTCCCGGCCGG 59.026 55.000 37.99 37.99 0.00 6.13
1799 8491 2.833631 AAATACTTATCTCCCGGCCG 57.166 50.000 21.04 21.04 0.00 6.13
1838 8530 9.599866 ACGTGAATTCTTATGTATGATCAGAAA 57.400 29.630 7.05 0.00 0.00 2.52
1839 8531 9.599866 AACGTGAATTCTTATGTATGATCAGAA 57.400 29.630 7.05 0.00 0.00 3.02
1840 8532 9.249457 GAACGTGAATTCTTATGTATGATCAGA 57.751 33.333 7.05 0.00 0.00 3.27
1841 8533 9.034544 TGAACGTGAATTCTTATGTATGATCAG 57.965 33.333 7.05 0.00 0.00 2.90
1842 8534 8.940768 TGAACGTGAATTCTTATGTATGATCA 57.059 30.769 7.05 0.00 0.00 2.92
1843 8535 9.035607 ACTGAACGTGAATTCTTATGTATGATC 57.964 33.333 7.05 0.00 0.00 2.92
1844 8536 8.820933 CACTGAACGTGAATTCTTATGTATGAT 58.179 33.333 7.05 0.00 46.81 2.45
1846 8538 6.901887 GCACTGAACGTGAATTCTTATGTATG 59.098 38.462 7.05 0.00 46.81 2.39
1847 8539 6.593770 TGCACTGAACGTGAATTCTTATGTAT 59.406 34.615 7.05 0.00 46.81 2.29
1848 8540 5.929415 TGCACTGAACGTGAATTCTTATGTA 59.071 36.000 7.05 0.00 46.81 2.29
1849 8541 4.754618 TGCACTGAACGTGAATTCTTATGT 59.245 37.500 7.05 0.00 46.81 2.29
1850 8542 5.281693 TGCACTGAACGTGAATTCTTATG 57.718 39.130 7.05 0.00 46.81 1.90
1851 8543 5.940192 TTGCACTGAACGTGAATTCTTAT 57.060 34.783 7.05 0.00 46.81 1.73
1852 8544 5.743026 TTTGCACTGAACGTGAATTCTTA 57.257 34.783 7.05 0.00 46.81 2.10
1853 8545 4.630894 TTTGCACTGAACGTGAATTCTT 57.369 36.364 7.05 0.00 46.81 2.52
1854 8546 4.630894 TTTTGCACTGAACGTGAATTCT 57.369 36.364 7.05 0.00 46.81 2.40
1855 8547 5.231991 ACAATTTTGCACTGAACGTGAATTC 59.768 36.000 0.00 0.00 46.81 2.17
1856 8548 5.108517 ACAATTTTGCACTGAACGTGAATT 58.891 33.333 0.00 0.00 46.81 2.17
1857 8549 4.681744 ACAATTTTGCACTGAACGTGAAT 58.318 34.783 0.00 0.00 46.81 2.57
1858 8550 4.103365 ACAATTTTGCACTGAACGTGAA 57.897 36.364 0.00 0.00 46.81 3.18
1859 8551 3.773860 ACAATTTTGCACTGAACGTGA 57.226 38.095 0.00 0.00 46.81 4.35
1860 8552 5.741510 TCTTAACAATTTTGCACTGAACGTG 59.258 36.000 0.00 0.00 46.58 4.49
1861 8553 5.885881 TCTTAACAATTTTGCACTGAACGT 58.114 33.333 0.00 0.00 0.00 3.99
1892 8584 6.448852 CAATCGATGGCCATCATATCAAAAA 58.551 36.000 38.08 15.99 37.69 1.94
1893 8585 5.047872 CCAATCGATGGCCATCATATCAAAA 60.048 40.000 38.08 16.90 43.80 2.44
1894 8586 4.460034 CCAATCGATGGCCATCATATCAAA 59.540 41.667 38.08 18.12 43.80 2.69
1896 8588 3.613030 CCAATCGATGGCCATCATATCA 58.387 45.455 38.08 20.13 43.80 2.15
1908 8600 5.460419 GCTCTTAGTCAACTACCAATCGATG 59.540 44.000 0.00 0.00 0.00 3.84
1909 8601 5.127194 TGCTCTTAGTCAACTACCAATCGAT 59.873 40.000 0.00 0.00 0.00 3.59
1911 8603 4.744570 TGCTCTTAGTCAACTACCAATCG 58.255 43.478 0.00 0.00 0.00 3.34
1913 8605 9.686683 ATAATTTGCTCTTAGTCAACTACCAAT 57.313 29.630 0.00 0.00 0.00 3.16
1914 8606 9.515226 AATAATTTGCTCTTAGTCAACTACCAA 57.485 29.630 0.00 0.00 0.00 3.67
1915 8607 9.515226 AAATAATTTGCTCTTAGTCAACTACCA 57.485 29.630 0.00 0.00 0.00 3.25
1930 8622 6.150976 TCGGTCTGACATGAAAATAATTTGCT 59.849 34.615 10.38 0.00 0.00 3.91
1931 8623 6.321717 TCGGTCTGACATGAAAATAATTTGC 58.678 36.000 10.38 0.00 0.00 3.68
1932 8624 6.470235 GCTCGGTCTGACATGAAAATAATTTG 59.530 38.462 10.38 0.00 0.00 2.32
1933 8625 6.404734 GGCTCGGTCTGACATGAAAATAATTT 60.405 38.462 10.38 0.00 0.00 1.82
1971 8663 7.552458 AAGAAAAACAAGGTGCCAAATTAAG 57.448 32.000 0.00 0.00 0.00 1.85
1985 8775 6.256912 AGTCGGTTTGTGTAAGAAAAACAA 57.743 33.333 0.00 0.00 35.88 2.83
2100 8897 2.222027 CAGTTGTTCTTGTCCCAGTCC 58.778 52.381 0.00 0.00 0.00 3.85
2152 8949 2.028567 CCTCCTCAGAAACTCCAGTGTC 60.029 54.545 0.00 0.00 32.43 3.67
2155 8952 0.980423 GCCTCCTCAGAAACTCCAGT 59.020 55.000 0.00 0.00 0.00 4.00
2157 8954 1.201429 GGGCCTCCTCAGAAACTCCA 61.201 60.000 0.84 0.00 0.00 3.86
2174 8971 2.182030 GCGAGTCCGTCTTGAGGG 59.818 66.667 3.19 3.19 38.24 4.30
2348 9145 1.517694 GTATCGCCGAAGCCGTCAA 60.518 57.895 0.00 0.00 34.57 3.18
2655 9452 5.703876 AGCTTGTGATTTTTCGGAGATTTC 58.296 37.500 0.00 0.00 35.04 2.17
2659 9456 3.738982 TGAGCTTGTGATTTTTCGGAGA 58.261 40.909 0.00 0.00 0.00 3.71
2696 9525 8.592809 AGAGTTTGCTCAGGAATAGGAATATAG 58.407 37.037 0.00 0.00 44.00 1.31
2854 9728 8.470805 CGTCAGAATTGCCCTATAAGTAGATAT 58.529 37.037 0.00 0.00 0.00 1.63
2855 9729 7.577046 GCGTCAGAATTGCCCTATAAGTAGATA 60.577 40.741 0.00 0.00 0.00 1.98
2856 9730 6.692486 CGTCAGAATTGCCCTATAAGTAGAT 58.308 40.000 0.00 0.00 0.00 1.98
2857 9731 5.509163 GCGTCAGAATTGCCCTATAAGTAGA 60.509 44.000 0.00 0.00 0.00 2.59
2858 9732 4.686554 GCGTCAGAATTGCCCTATAAGTAG 59.313 45.833 0.00 0.00 0.00 2.57
2859 9733 4.100344 TGCGTCAGAATTGCCCTATAAGTA 59.900 41.667 0.00 0.00 0.00 2.24
2860 9734 3.118408 TGCGTCAGAATTGCCCTATAAGT 60.118 43.478 0.00 0.00 0.00 2.24
2861 9735 3.466836 TGCGTCAGAATTGCCCTATAAG 58.533 45.455 0.00 0.00 0.00 1.73
2862 9736 3.133901 TCTGCGTCAGAATTGCCCTATAA 59.866 43.478 7.02 0.00 37.57 0.98
2945 9882 5.072741 CAGAGAAGGATTTTCCCTTTCACA 58.927 41.667 0.00 0.00 45.97 3.58
3221 10178 4.471025 TCAGAAGGGATAGACTCAATGCAA 59.529 41.667 0.00 0.00 0.00 4.08
3403 10371 3.058224 GTCCACTCTTGCCACATTTGTAC 60.058 47.826 0.00 0.00 0.00 2.90
3410 10378 0.321671 GCTAGTCCACTCTTGCCACA 59.678 55.000 0.00 0.00 31.97 4.17
3418 10386 0.461961 AATGGCTCGCTAGTCCACTC 59.538 55.000 4.03 0.00 33.54 3.51
3443 10413 3.457380 ACAAGGATGTGCTGATGATAGGT 59.543 43.478 0.00 0.00 38.69 3.08
3596 10566 4.377708 AGTGCGACGATGCCAGCA 62.378 61.111 0.00 0.00 37.26 4.41
3683 10653 1.318158 GGCAATGGCTAGCTGCAGTT 61.318 55.000 23.88 12.62 45.15 3.16
3703 10673 7.147312 GTGAACTAGGAATCAGATGATCTCAG 58.853 42.308 0.00 0.00 32.75 3.35
3714 10684 5.248248 TCATGAACTGGTGAACTAGGAATCA 59.752 40.000 0.00 1.32 0.00 2.57
3758 10750 2.189594 TCATCACCAGGCAGAAACAG 57.810 50.000 0.00 0.00 0.00 3.16
3931 10923 2.570415 TGGTGCACCCGAAGAATTTA 57.430 45.000 32.62 7.31 35.15 1.40
4103 11095 1.376942 CAGCTGGGCTCTGGACTTG 60.377 63.158 5.57 0.00 36.40 3.16
4156 11148 3.791973 ACTTTGTTCATGGCGTTGAAA 57.208 38.095 4.49 0.00 37.36 2.69
4180 11172 3.603173 GCGACAACTTCACCTTAAACGTC 60.603 47.826 0.00 0.00 0.00 4.34
4502 11500 2.124570 ATCTGTGCGGATGGTGGC 60.125 61.111 0.00 0.00 0.00 5.01
4507 11505 2.477825 CCTTAGTCATCTGTGCGGATG 58.522 52.381 13.32 13.32 43.01 3.51
4508 11506 1.202580 GCCTTAGTCATCTGTGCGGAT 60.203 52.381 0.00 0.00 0.00 4.18
4512 11510 0.811616 CCGGCCTTAGTCATCTGTGC 60.812 60.000 0.00 0.00 0.00 4.57
4513 11511 0.537188 ACCGGCCTTAGTCATCTGTG 59.463 55.000 0.00 0.00 0.00 3.66
4514 11512 0.824759 GACCGGCCTTAGTCATCTGT 59.175 55.000 0.00 0.00 33.08 3.41
4515 11513 0.824109 TGACCGGCCTTAGTCATCTG 59.176 55.000 14.16 0.00 38.07 2.90
4516 11514 3.300032 TGACCGGCCTTAGTCATCT 57.700 52.632 14.16 0.00 38.07 2.90
4519 11517 1.754803 CACTATGACCGGCCTTAGTCA 59.245 52.381 18.79 18.79 46.39 3.41
4520 11518 1.068741 CCACTATGACCGGCCTTAGTC 59.931 57.143 12.55 5.80 0.00 2.59
4521 11519 1.120530 CCACTATGACCGGCCTTAGT 58.879 55.000 10.07 10.07 0.00 2.24
4522 11520 0.393077 CCCACTATGACCGGCCTTAG 59.607 60.000 0.00 5.06 0.00 2.18
4523 11521 0.031917 TCCCACTATGACCGGCCTTA 60.032 55.000 0.00 0.00 0.00 2.69
4524 11522 1.306654 TCCCACTATGACCGGCCTT 60.307 57.895 0.00 0.00 0.00 4.35
4525 11523 1.762460 CTCCCACTATGACCGGCCT 60.762 63.158 0.00 0.00 0.00 5.19
4526 11524 0.757935 TACTCCCACTATGACCGGCC 60.758 60.000 0.00 0.00 0.00 6.13
4527 11525 1.117150 TTACTCCCACTATGACCGGC 58.883 55.000 0.00 0.00 0.00 6.13
4528 11526 2.385803 AGTTACTCCCACTATGACCGG 58.614 52.381 0.00 0.00 0.00 5.28
4529 11527 4.499357 GCTAAGTTACTCCCACTATGACCG 60.499 50.000 0.00 0.00 0.00 4.79
4530 11528 4.650131 AGCTAAGTTACTCCCACTATGACC 59.350 45.833 0.00 0.00 0.00 4.02
4566 11564 0.749649 AGCAGACTTATCTCGGGCTG 59.250 55.000 0.00 0.00 32.10 4.85
4567 11565 1.490574 AAGCAGACTTATCTCGGGCT 58.509 50.000 0.00 0.00 34.14 5.19
4597 11595 6.696411 AGAACACCTCTCTTCTCATTAACTG 58.304 40.000 0.00 0.00 0.00 3.16
4636 11634 2.928116 GGAAGTGCTATGTGACGGTAAC 59.072 50.000 0.00 0.00 0.00 2.50
4701 11699 9.656323 AATTGGGAGTAACATAGAGATAGTGTA 57.344 33.333 0.00 0.00 0.00 2.90
4765 11763 2.147958 TCCGGTTAACAAGTGTCATGC 58.852 47.619 8.10 0.00 0.00 4.06
4766 11764 5.416083 TCTATCCGGTTAACAAGTGTCATG 58.584 41.667 8.10 0.00 0.00 3.07
4767 11765 5.187186 ACTCTATCCGGTTAACAAGTGTCAT 59.813 40.000 8.10 0.00 0.00 3.06
4769 11767 4.863131 CACTCTATCCGGTTAACAAGTGTC 59.137 45.833 8.10 0.00 0.00 3.67
4770 11768 4.282703 ACACTCTATCCGGTTAACAAGTGT 59.717 41.667 19.51 19.51 40.76 3.55
4771 11769 4.817517 ACACTCTATCCGGTTAACAAGTG 58.182 43.478 18.68 18.68 38.97 3.16
4772 11770 5.011329 TCAACACTCTATCCGGTTAACAAGT 59.989 40.000 8.10 0.00 0.00 3.16
4773 11771 5.347907 GTCAACACTCTATCCGGTTAACAAG 59.652 44.000 8.10 0.55 0.00 3.16
4774 11772 5.221481 TGTCAACACTCTATCCGGTTAACAA 60.221 40.000 8.10 0.00 0.00 2.83
4775 11773 4.281435 TGTCAACACTCTATCCGGTTAACA 59.719 41.667 8.10 0.00 0.00 2.41
4778 11806 4.768448 TCTTGTCAACACTCTATCCGGTTA 59.232 41.667 0.00 0.00 0.00 2.85
4874 11903 9.275572 TCTAGTATTAAACAAACCAGATACCCT 57.724 33.333 0.00 0.00 0.00 4.34
4957 12027 0.038166 TTGGGAGTAAGCCAAGCCAG 59.962 55.000 0.00 0.00 0.00 4.85
4963 12078 2.266279 AGCTAGTTTGGGAGTAAGCCA 58.734 47.619 0.00 0.00 0.00 4.75
4972 12087 4.878397 CCATCAAGTAGAAGCTAGTTTGGG 59.122 45.833 0.00 0.00 0.00 4.12
4975 12090 7.335422 CACATTCCATCAAGTAGAAGCTAGTTT 59.665 37.037 0.00 0.00 0.00 2.66
4976 12091 6.820656 CACATTCCATCAAGTAGAAGCTAGTT 59.179 38.462 0.00 0.00 0.00 2.24
4988 12103 9.090692 GAATTAATCCAAACACATTCCATCAAG 57.909 33.333 0.00 0.00 0.00 3.02
5037 12152 8.482943 AGTGACATTATAAGGCACATGTAAGTA 58.517 33.333 19.40 0.00 29.81 2.24
5045 12160 4.729227 TCGAGTGACATTATAAGGCACA 57.271 40.909 19.40 9.37 32.16 4.57
5055 12170 4.118410 GCATGAGAGAATCGAGTGACATT 58.882 43.478 0.00 0.00 42.67 2.71
5058 12173 2.115595 CGCATGAGAGAATCGAGTGAC 58.884 52.381 0.00 0.00 42.67 3.67
5062 12177 1.003438 TCGACGCATGAGAGAATCGAG 60.003 52.381 2.50 0.00 42.67 4.04
5064 12179 1.827578 TTCGACGCATGAGAGAATCG 58.172 50.000 2.50 1.95 42.67 3.34
5070 12185 2.423538 TGAGAGAATTCGACGCATGAGA 59.576 45.455 2.50 0.00 0.00 3.27
5077 12192 3.736252 ACAAAGTGTGAGAGAATTCGACG 59.264 43.478 0.00 0.00 0.00 5.12
5093 12208 3.818773 GCCATGTACTACCACAACAAAGT 59.181 43.478 0.00 0.00 30.84 2.66
5103 12218 2.210116 CCGATTGTGCCATGTACTACC 58.790 52.381 0.00 0.00 0.00 3.18
5119 12234 0.041090 AAGGAATTGTTGGCCCCGAT 59.959 50.000 0.00 0.00 0.00 4.18
5121 12236 0.897863 TCAAGGAATTGTTGGCCCCG 60.898 55.000 0.00 0.00 0.00 5.73
5123 12238 4.443315 CCAATATCAAGGAATTGTTGGCCC 60.443 45.833 0.00 0.00 32.34 5.80
5124 12239 4.405358 TCCAATATCAAGGAATTGTTGGCC 59.595 41.667 0.00 0.00 35.71 5.36
5125 12240 5.452356 CCTCCAATATCAAGGAATTGTTGGC 60.452 44.000 0.00 0.00 35.71 4.52
5127 12242 6.780457 ACCTCCAATATCAAGGAATTGTTG 57.220 37.500 5.29 0.00 34.16 3.33
5128 12243 7.872138 TCTACCTCCAATATCAAGGAATTGTT 58.128 34.615 5.29 0.00 34.16 2.83
5130 12245 8.381636 AGATCTACCTCCAATATCAAGGAATTG 58.618 37.037 0.00 0.00 34.16 2.32
5131 12246 8.381636 CAGATCTACCTCCAATATCAAGGAATT 58.618 37.037 0.00 0.00 34.16 2.17
5132 12247 7.736691 TCAGATCTACCTCCAATATCAAGGAAT 59.263 37.037 0.00 0.00 34.16 3.01
5134 12249 6.624297 TCAGATCTACCTCCAATATCAAGGA 58.376 40.000 0.00 0.00 34.16 3.36
5135 12250 6.924913 TCAGATCTACCTCCAATATCAAGG 57.075 41.667 0.00 0.00 36.21 3.61
5136 12251 7.818446 CACATCAGATCTACCTCCAATATCAAG 59.182 40.741 0.00 0.00 0.00 3.02
5137 12252 7.290948 ACACATCAGATCTACCTCCAATATCAA 59.709 37.037 0.00 0.00 0.00 2.57
5138 12253 6.784473 ACACATCAGATCTACCTCCAATATCA 59.216 38.462 0.00 0.00 0.00 2.15
5139 12254 7.238486 ACACATCAGATCTACCTCCAATATC 57.762 40.000 0.00 0.00 0.00 1.63
5140 12255 8.173412 TCTACACATCAGATCTACCTCCAATAT 58.827 37.037 0.00 0.00 0.00 1.28
5141 12256 7.526918 TCTACACATCAGATCTACCTCCAATA 58.473 38.462 0.00 0.00 0.00 1.90
5142 12257 6.377080 TCTACACATCAGATCTACCTCCAAT 58.623 40.000 0.00 0.00 0.00 3.16
5143 12258 5.766590 TCTACACATCAGATCTACCTCCAA 58.233 41.667 0.00 0.00 0.00 3.53
5144 12259 5.388599 TCTACACATCAGATCTACCTCCA 57.611 43.478 0.00 0.00 0.00 3.86
5145 12260 5.123186 CGATCTACACATCAGATCTACCTCC 59.877 48.000 0.00 0.00 44.14 4.30
5146 12261 5.391523 GCGATCTACACATCAGATCTACCTC 60.392 48.000 0.00 0.00 44.14 3.85
5147 12262 4.457603 GCGATCTACACATCAGATCTACCT 59.542 45.833 0.00 0.00 44.14 3.08
5148 12263 4.670478 CGCGATCTACACATCAGATCTACC 60.670 50.000 0.00 0.03 44.14 3.18
5149 12264 4.083749 ACGCGATCTACACATCAGATCTAC 60.084 45.833 15.93 2.78 44.14 2.59
5150 12265 4.065789 ACGCGATCTACACATCAGATCTA 58.934 43.478 15.93 0.00 44.14 1.98
5151 12266 2.881513 ACGCGATCTACACATCAGATCT 59.118 45.455 15.93 0.00 44.14 2.75
5152 12267 2.976509 CACGCGATCTACACATCAGATC 59.023 50.000 15.93 2.85 43.29 2.75
5153 12268 2.359214 ACACGCGATCTACACATCAGAT 59.641 45.455 15.93 0.00 35.43 2.90
5170 12285 4.508492 ACATCGACTATAGTCTCAGACACG 59.492 45.833 26.32 13.95 42.66 4.49
5174 12289 3.815962 GCCACATCGACTATAGTCTCAGA 59.184 47.826 26.32 18.10 42.66 3.27
5261 12395 1.404047 CCACCGCAATTGGATCAAACC 60.404 52.381 7.72 0.00 36.02 3.27
5266 12400 0.107214 TCTCCCACCGCAATTGGATC 60.107 55.000 7.72 0.00 36.02 3.36
5274 12408 1.479323 GTACATAACTCTCCCACCGCA 59.521 52.381 0.00 0.00 0.00 5.69
5295 12429 7.290110 TCATTTGGACGTGACTAGATCATAT 57.710 36.000 0.00 0.00 40.28 1.78
5381 12515 6.617289 GCTGCTTTCACAAATAATGTACAC 57.383 37.500 0.00 0.00 41.46 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.