Multiple sequence alignment - TraesCS3D01G008200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G008200 chr3D 100.000 3370 0 0 1 3370 2882646 2879277 0.000000e+00 6224.0
1 TraesCS3D01G008200 chr3D 97.924 819 15 2 1 819 532182829 532182013 0.000000e+00 1417.0
2 TraesCS3D01G008200 chr3D 88.804 786 86 2 988 1772 2785054 2785838 0.000000e+00 963.0
3 TraesCS3D01G008200 chr3D 100.000 305 0 0 3787 4091 2878860 2878556 7.680000e-157 564.0
4 TraesCS3D01G008200 chr3B 88.280 2227 215 18 955 3160 2901022 2903223 0.000000e+00 2625.0
5 TraesCS3D01G008200 chr3B 94.495 109 6 0 816 924 2900662 2900770 7.030000e-38 169.0
6 TraesCS3D01G008200 chr6B 82.934 2045 306 21 999 3011 695783302 695785335 0.000000e+00 1803.0
7 TraesCS3D01G008200 chr6B 81.490 2080 324 32 999 3052 695442229 695440185 0.000000e+00 1652.0
8 TraesCS3D01G008200 chr6A 81.499 2081 325 24 996 3046 603691500 603689450 0.000000e+00 1655.0
9 TraesCS3D01G008200 chr6A 100.000 29 0 0 3323 3351 134690379 134690351 2.000000e-03 54.7
10 TraesCS3D01G008200 chr5A 81.348 2032 333 26 1002 3010 480788435 480786427 0.000000e+00 1611.0
11 TraesCS3D01G008200 chr5A 93.988 815 47 2 1 815 382982744 382981932 0.000000e+00 1232.0
12 TraesCS3D01G008200 chr7D 99.141 815 7 0 1 815 28219823 28219009 0.000000e+00 1467.0
13 TraesCS3D01G008200 chr7D 100.000 28 0 0 3324 3351 178278009 178277982 7.000000e-03 52.8
14 TraesCS3D01G008200 chr6D 98.779 819 10 0 1 819 83070150 83069332 0.000000e+00 1458.0
15 TraesCS3D01G008200 chr6D 100.000 29 0 0 3323 3351 110215496 110215468 2.000000e-03 54.7
16 TraesCS3D01G008200 chr1D 98.896 815 8 1 1 815 429509292 429508479 0.000000e+00 1454.0
17 TraesCS3D01G008200 chr1D 96.319 815 29 1 1 815 395422939 395423752 0.000000e+00 1338.0
18 TraesCS3D01G008200 chrUn 98.291 819 13 1 1 819 11303712 11302895 0.000000e+00 1434.0
19 TraesCS3D01G008200 chrUn 100.000 29 0 0 3323 3351 421241343 421241371 2.000000e-03 54.7
20 TraesCS3D01G008200 chr5D 97.549 816 19 1 1 815 473120609 473119794 0.000000e+00 1395.0
21 TraesCS3D01G008200 chr5D 77.396 2035 413 32 1000 3003 380190966 380192984 0.000000e+00 1166.0
22 TraesCS3D01G008200 chr4A 95.706 815 35 0 1 815 544956165 544955351 0.000000e+00 1312.0
23 TraesCS3D01G008200 chr5B 78.396 2032 385 32 1000 3004 456460914 456462918 0.000000e+00 1271.0
24 TraesCS3D01G008200 chr2D 72.290 2057 467 73 1001 3004 13963779 13961773 2.780000e-151 545.0
25 TraesCS3D01G008200 chr2B 73.138 1195 259 37 1001 2158 25443000 25444169 4.990000e-99 372.0
26 TraesCS3D01G008200 chr2B 82.258 124 22 0 2868 2991 137214774 137214651 1.550000e-19 108.0
27 TraesCS3D01G008200 chr2B 100.000 29 0 0 3323 3351 7031073 7031101 2.000000e-03 54.7
28 TraesCS3D01G008200 chr2B 100.000 29 0 0 3323 3351 7069764 7069792 2.000000e-03 54.7
29 TraesCS3D01G008200 chr7B 76.451 293 65 4 1040 1330 594321282 594320992 5.480000e-34 156.0
30 TraesCS3D01G008200 chr7A 87.692 65 5 2 3290 3351 128926751 128926687 5.670000e-09 73.1
31 TraesCS3D01G008200 chr4D 100.000 28 0 0 3324 3351 12511675 12511648 7.000000e-03 52.8
32 TraesCS3D01G008200 chr4D 84.746 59 1 5 3293 3351 298879906 298879956 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G008200 chr3D 2878556 2882646 4090 True 3394 6224 100.0000 1 4091 2 chr3D.!!$R2 4090
1 TraesCS3D01G008200 chr3D 532182013 532182829 816 True 1417 1417 97.9240 1 819 1 chr3D.!!$R1 818
2 TraesCS3D01G008200 chr3D 2785054 2785838 784 False 963 963 88.8040 988 1772 1 chr3D.!!$F1 784
3 TraesCS3D01G008200 chr3B 2900662 2903223 2561 False 1397 2625 91.3875 816 3160 2 chr3B.!!$F1 2344
4 TraesCS3D01G008200 chr6B 695783302 695785335 2033 False 1803 1803 82.9340 999 3011 1 chr6B.!!$F1 2012
5 TraesCS3D01G008200 chr6B 695440185 695442229 2044 True 1652 1652 81.4900 999 3052 1 chr6B.!!$R1 2053
6 TraesCS3D01G008200 chr6A 603689450 603691500 2050 True 1655 1655 81.4990 996 3046 1 chr6A.!!$R2 2050
7 TraesCS3D01G008200 chr5A 480786427 480788435 2008 True 1611 1611 81.3480 1002 3010 1 chr5A.!!$R2 2008
8 TraesCS3D01G008200 chr5A 382981932 382982744 812 True 1232 1232 93.9880 1 815 1 chr5A.!!$R1 814
9 TraesCS3D01G008200 chr7D 28219009 28219823 814 True 1467 1467 99.1410 1 815 1 chr7D.!!$R1 814
10 TraesCS3D01G008200 chr6D 83069332 83070150 818 True 1458 1458 98.7790 1 819 1 chr6D.!!$R1 818
11 TraesCS3D01G008200 chr1D 429508479 429509292 813 True 1454 1454 98.8960 1 815 1 chr1D.!!$R1 814
12 TraesCS3D01G008200 chr1D 395422939 395423752 813 False 1338 1338 96.3190 1 815 1 chr1D.!!$F1 814
13 TraesCS3D01G008200 chrUn 11302895 11303712 817 True 1434 1434 98.2910 1 819 1 chrUn.!!$R1 818
14 TraesCS3D01G008200 chr5D 473119794 473120609 815 True 1395 1395 97.5490 1 815 1 chr5D.!!$R1 814
15 TraesCS3D01G008200 chr5D 380190966 380192984 2018 False 1166 1166 77.3960 1000 3003 1 chr5D.!!$F1 2003
16 TraesCS3D01G008200 chr4A 544955351 544956165 814 True 1312 1312 95.7060 1 815 1 chr4A.!!$R1 814
17 TraesCS3D01G008200 chr5B 456460914 456462918 2004 False 1271 1271 78.3960 1000 3004 1 chr5B.!!$F1 2004
18 TraesCS3D01G008200 chr2D 13961773 13963779 2006 True 545 545 72.2900 1001 3004 1 chr2D.!!$R1 2003
19 TraesCS3D01G008200 chr2B 25443000 25444169 1169 False 372 372 73.1380 1001 2158 1 chr2B.!!$F3 1157

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.247185 CCCAAATGTGCCGCTGAAAT 59.753 50.0 0.0 0.0 0.00 2.17 F
1693 1973 0.031994 AGAACGCACCACCAAAATGC 59.968 50.0 0.0 0.0 35.96 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 2454 0.035056 AGGCCTGGTGAATGCACTAC 60.035 55.0 3.11 0.0 44.52 2.73 R
3277 3641 0.105658 TAGATGGTCCTTCCCTCCGG 60.106 60.0 0.00 0.0 32.34 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
399 400 0.247185 CCCAAATGTGCCGCTGAAAT 59.753 50.000 0.00 0.00 0.00 2.17
427 428 2.485479 CCTAATGCCGCAACTACTCCAT 60.485 50.000 0.00 0.00 0.00 3.41
580 581 3.155167 GGGGGACGCGGAGAGAAT 61.155 66.667 12.47 0.00 0.00 2.40
880 882 2.711885 CACTTGCATGCATCATACACG 58.288 47.619 23.37 5.36 0.00 4.49
890 892 4.260985 TGCATCATACACGGAATCAAACT 58.739 39.130 0.00 0.00 0.00 2.66
891 893 4.332543 TGCATCATACACGGAATCAAACTC 59.667 41.667 0.00 0.00 0.00 3.01
897 899 6.705825 TCATACACGGAATCAAACTCATATGG 59.294 38.462 2.13 0.00 0.00 2.74
919 921 5.012046 TGGCACATGGAGTTATCATACTAGG 59.988 44.000 0.00 0.00 0.00 3.02
933 1177 6.859112 TCATACTAGGATTTCCCATCTAGC 57.141 41.667 0.00 0.00 37.41 3.42
934 1178 6.565974 TCATACTAGGATTTCCCATCTAGCT 58.434 40.000 0.00 0.00 37.41 3.32
935 1179 6.438741 TCATACTAGGATTTCCCATCTAGCTG 59.561 42.308 0.00 0.00 37.41 4.24
936 1180 3.906846 ACTAGGATTTCCCATCTAGCTGG 59.093 47.826 5.58 5.58 37.41 4.85
937 1181 3.066208 AGGATTTCCCATCTAGCTGGA 57.934 47.619 14.35 0.82 38.69 3.86
938 1182 2.708325 AGGATTTCCCATCTAGCTGGAC 59.292 50.000 14.35 0.78 38.69 4.02
939 1183 2.708325 GGATTTCCCATCTAGCTGGACT 59.292 50.000 14.35 0.00 38.69 3.85
940 1184 3.904339 GGATTTCCCATCTAGCTGGACTA 59.096 47.826 14.35 0.00 38.69 2.59
941 1185 4.262678 GGATTTCCCATCTAGCTGGACTAC 60.263 50.000 14.35 2.04 38.69 2.73
942 1186 3.689872 TTCCCATCTAGCTGGACTACT 57.310 47.619 14.35 0.00 38.69 2.57
943 1187 2.950781 TCCCATCTAGCTGGACTACTG 58.049 52.381 14.35 0.00 38.69 2.74
944 1188 1.967066 CCCATCTAGCTGGACTACTGG 59.033 57.143 14.35 6.18 38.69 4.00
945 1189 2.424957 CCCATCTAGCTGGACTACTGGA 60.425 54.545 16.64 0.00 38.69 3.86
946 1190 2.890311 CCATCTAGCTGGACTACTGGAG 59.110 54.545 11.03 0.00 38.69 3.86
947 1191 3.561143 CATCTAGCTGGACTACTGGAGT 58.439 50.000 0.13 0.00 42.90 3.85
948 1192 4.446455 CCATCTAGCTGGACTACTGGAGTA 60.446 50.000 11.03 0.00 39.06 2.59
949 1193 4.153673 TCTAGCTGGACTACTGGAGTAC 57.846 50.000 0.00 0.00 39.06 2.73
979 1223 1.006571 GAGTCGAGTGGGCAACGAA 60.007 57.895 0.00 0.00 37.77 3.85
1086 1333 1.075659 GCTCCAAGTGGCCCTCTTT 59.924 57.895 0.00 0.00 34.44 2.52
1426 1685 1.377202 GCCTCCGCCTTGATGTTCA 60.377 57.895 0.00 0.00 0.00 3.18
1544 1803 2.824041 CCGGCATTTCCACCCTCG 60.824 66.667 0.00 0.00 34.01 4.63
1560 1819 0.229753 CTCGCGACACAGTGTTCAAC 59.770 55.000 3.71 0.00 0.00 3.18
1561 1820 0.458716 TCGCGACACAGTGTTCAACA 60.459 50.000 3.71 0.00 0.00 3.33
1565 1824 2.276201 CGACACAGTGTTCAACAAGGA 58.724 47.619 7.86 0.00 0.00 3.36
1570 1832 2.945668 ACAGTGTTCAACAAGGAAGAGC 59.054 45.455 0.00 0.00 0.00 4.09
1678 1952 2.174319 GCGGCGGATGGAGAAGAAC 61.174 63.158 9.78 0.00 0.00 3.01
1693 1973 0.031994 AGAACGCACCACCAAAATGC 59.968 50.000 0.00 0.00 35.96 3.56
1696 1976 1.363443 CGCACCACCAAAATGCTGT 59.637 52.632 0.00 0.00 37.20 4.40
1773 2053 3.943691 TACACCAAGGCGCCGGTT 61.944 61.111 21.92 15.51 31.41 4.44
1826 2106 3.864686 CTCGCCGTTCGCCATTGG 61.865 66.667 0.00 0.00 38.27 3.16
1918 2201 2.749839 TGTATGGTGGCGCCTTGC 60.750 61.111 29.70 17.30 45.38 4.01
1929 2212 1.817099 CGCCTTGCTCATGGAGACC 60.817 63.158 6.04 0.00 0.00 3.85
1931 2214 0.106819 GCCTTGCTCATGGAGACCAT 60.107 55.000 6.04 0.00 46.37 3.55
1988 2271 0.324943 GCCTTCCTGAGCACCACTAA 59.675 55.000 0.00 0.00 0.00 2.24
2038 2321 2.773458 AACGAGAGGTGGGACCAAT 58.227 52.632 0.00 0.00 41.95 3.16
2049 2332 2.093341 GTGGGACCAATTTAGGCGTCTA 60.093 50.000 0.00 0.00 0.00 2.59
2068 2351 4.920340 GTCTAGTCGCATATCTTCACCATG 59.080 45.833 0.00 0.00 0.00 3.66
2076 2359 4.686972 CATATCTTCACCATGTCGTGAGT 58.313 43.478 5.18 0.58 43.39 3.41
2079 2362 2.102420 TCTTCACCATGTCGTGAGTGTT 59.898 45.455 5.18 0.00 43.39 3.32
2162 2454 1.301244 ACTTCTGCACACGCTCTGG 60.301 57.895 0.00 0.00 39.64 3.86
2163 2455 1.301244 CTTCTGCACACGCTCTGGT 60.301 57.895 0.00 0.00 39.64 4.00
2187 2488 1.030488 CATTCACCAGGCCTCTGCTG 61.030 60.000 0.00 0.00 39.61 4.41
2277 2587 0.178767 CCAGCCATGTCAAGGATCGA 59.821 55.000 0.00 0.00 0.00 3.59
2281 2591 2.171237 AGCCATGTCAAGGATCGAATCA 59.829 45.455 0.00 0.00 0.00 2.57
2298 2608 0.808125 TCACCCAACATATGCGCAAC 59.192 50.000 17.11 0.00 0.00 4.17
2316 2638 3.696045 CAACATGTACATGGAAGGGGAA 58.304 45.455 33.32 0.00 42.91 3.97
2322 2644 1.698874 ACATGGAAGGGGAAGGGATT 58.301 50.000 0.00 0.00 0.00 3.01
2328 2650 2.158798 GGAAGGGGAAGGGATTAACTCG 60.159 54.545 0.00 0.00 0.00 4.18
2337 2659 2.104963 AGGGATTAACTCGCTGGGAATC 59.895 50.000 0.00 0.00 44.85 2.52
2345 2667 1.144936 CGCTGGGAATCCTCAGGAC 59.855 63.158 16.02 0.00 32.98 3.85
2346 2668 1.617018 CGCTGGGAATCCTCAGGACA 61.617 60.000 16.02 0.00 32.98 4.02
2388 2716 1.485294 TTCGCCAGGGCTTACTCCAA 61.485 55.000 8.91 0.00 39.32 3.53
2406 2734 2.503356 CCAAGGCATACTCAAGGACTCT 59.497 50.000 0.00 0.00 0.00 3.24
2409 2737 3.718723 AGGCATACTCAAGGACTCTCTT 58.281 45.455 0.00 0.00 0.00 2.85
2418 2746 1.996798 AGGACTCTCTTGGTGTCGAA 58.003 50.000 0.00 0.00 38.79 3.71
2451 2779 0.977627 TCATCATCTGGCACCTCGGT 60.978 55.000 0.00 0.00 0.00 4.69
2457 2785 3.352338 CTGGCACCTCGGTACCGAC 62.352 68.421 32.61 21.91 44.01 4.79
2484 2812 3.793144 GTCAAGAGCAAGCGGGCG 61.793 66.667 0.00 0.00 39.27 6.13
2565 2893 2.345244 CTCCTCGTGCAACAGCCT 59.655 61.111 0.00 0.00 35.74 4.58
2580 2908 1.153086 GCCTGACATGCTACCAGGG 60.153 63.158 19.23 4.40 45.67 4.45
2586 2914 1.068753 CATGCTACCAGGGCTCTCG 59.931 63.158 0.00 0.00 0.00 4.04
2592 2920 0.687757 TACCAGGGCTCTCGCAGAAT 60.688 55.000 0.00 0.00 38.10 2.40
2636 2973 5.063564 GCGAAAACCTAGTCAACATTCCTAG 59.936 44.000 0.00 0.00 0.00 3.02
2683 3029 5.655488 TCTGTGCTAAGCTCAAGAATCTAC 58.345 41.667 0.32 0.00 31.71 2.59
2700 3046 1.391933 TACTCCGCCTGCACGATGAT 61.392 55.000 0.00 0.00 34.06 2.45
2764 3122 8.193953 TGCAAAGATCCTGTATGATGAGTATA 57.806 34.615 0.00 0.00 0.00 1.47
2775 3133 8.023021 TGTATGATGAGTATAAGAGCAAAGGT 57.977 34.615 0.00 0.00 0.00 3.50
2843 3201 1.986757 AGCTGCTGACGATGGAGGT 60.987 57.895 0.00 0.00 0.00 3.85
2907 3268 2.344025 ACGGACATTCTTTTCTACGCC 58.656 47.619 0.00 0.00 0.00 5.68
3049 3410 6.619329 AAGAAGAGAAGGATCAGTTAGCTT 57.381 37.500 0.00 0.00 0.00 3.74
3065 3426 3.160679 AGCTTTACAAGGACAGGCATT 57.839 42.857 0.00 0.00 0.00 3.56
3069 3430 4.265073 CTTTACAAGGACAGGCATTAGCT 58.735 43.478 0.00 0.00 41.70 3.32
3070 3431 5.428253 CTTTACAAGGACAGGCATTAGCTA 58.572 41.667 0.00 0.00 41.70 3.32
3071 3432 5.429681 TTACAAGGACAGGCATTAGCTAA 57.570 39.130 8.99 8.99 41.70 3.09
3072 3433 4.510167 ACAAGGACAGGCATTAGCTAAT 57.490 40.909 13.37 13.37 41.70 1.73
3073 3434 5.630415 ACAAGGACAGGCATTAGCTAATA 57.370 39.130 18.45 0.00 41.70 0.98
3074 3435 6.192970 ACAAGGACAGGCATTAGCTAATAT 57.807 37.500 18.45 5.53 41.70 1.28
3093 3454 1.883678 TTCAGGCAGGGAGATGATGA 58.116 50.000 0.00 0.00 0.00 2.92
3095 3456 1.697982 TCAGGCAGGGAGATGATGATG 59.302 52.381 0.00 0.00 0.00 3.07
3096 3457 1.697982 CAGGCAGGGAGATGATGATGA 59.302 52.381 0.00 0.00 0.00 2.92
3097 3458 2.306219 CAGGCAGGGAGATGATGATGAT 59.694 50.000 0.00 0.00 0.00 2.45
3098 3459 2.306219 AGGCAGGGAGATGATGATGATG 59.694 50.000 0.00 0.00 0.00 3.07
3112 3473 6.152379 TGATGATGATGTATAGTTCTCACGC 58.848 40.000 0.00 0.00 0.00 5.34
3116 3477 4.840911 TGATGTATAGTTCTCACGCGTAC 58.159 43.478 13.44 6.60 0.00 3.67
3123 3484 0.876399 TTCTCACGCGTACTAGCACA 59.124 50.000 13.44 0.00 36.85 4.57
3129 3490 4.236147 TCACGCGTACTAGCACAATTTTA 58.764 39.130 13.44 0.00 36.85 1.52
3130 3491 4.865925 TCACGCGTACTAGCACAATTTTAT 59.134 37.500 13.44 0.00 36.85 1.40
3156 3520 6.748333 TCTTTGTATTCATGAAGGCTGAAG 57.252 37.500 14.54 12.87 36.16 3.02
3187 3551 9.901172 ATGTACTTAAATTTTATCTCCCGTCTT 57.099 29.630 0.00 0.00 0.00 3.01
3188 3552 9.374838 TGTACTTAAATTTTATCTCCCGTCTTC 57.625 33.333 0.00 0.00 0.00 2.87
3189 3553 9.374838 GTACTTAAATTTTATCTCCCGTCTTCA 57.625 33.333 0.00 0.00 0.00 3.02
3190 3554 8.857694 ACTTAAATTTTATCTCCCGTCTTCAA 57.142 30.769 0.00 0.00 0.00 2.69
3191 3555 8.727910 ACTTAAATTTTATCTCCCGTCTTCAAC 58.272 33.333 0.00 0.00 0.00 3.18
3192 3556 8.624367 TTAAATTTTATCTCCCGTCTTCAACA 57.376 30.769 0.00 0.00 0.00 3.33
3193 3557 7.519032 AAATTTTATCTCCCGTCTTCAACAA 57.481 32.000 0.00 0.00 0.00 2.83
3194 3558 7.519032 AATTTTATCTCCCGTCTTCAACAAA 57.481 32.000 0.00 0.00 0.00 2.83
3195 3559 6.554334 TTTTATCTCCCGTCTTCAACAAAG 57.446 37.500 0.00 0.00 36.22 2.77
3196 3560 5.477607 TTATCTCCCGTCTTCAACAAAGA 57.522 39.130 0.00 0.00 41.81 2.52
3197 3561 4.559862 ATCTCCCGTCTTCAACAAAGAT 57.440 40.909 0.00 0.00 45.57 2.40
3198 3562 3.926616 TCTCCCGTCTTCAACAAAGATC 58.073 45.455 0.00 0.00 45.57 2.75
3199 3563 3.323691 TCTCCCGTCTTCAACAAAGATCA 59.676 43.478 0.00 0.00 45.57 2.92
3200 3564 4.020218 TCTCCCGTCTTCAACAAAGATCAT 60.020 41.667 0.00 0.00 45.57 2.45
3201 3565 4.253685 TCCCGTCTTCAACAAAGATCATC 58.746 43.478 0.00 0.00 45.57 2.92
3202 3566 4.020218 TCCCGTCTTCAACAAAGATCATCT 60.020 41.667 0.00 0.00 45.57 2.90
3203 3567 4.331168 CCCGTCTTCAACAAAGATCATCTC 59.669 45.833 0.00 0.00 45.57 2.75
3204 3568 4.331168 CCGTCTTCAACAAAGATCATCTCC 59.669 45.833 0.00 0.00 45.57 3.71
3205 3569 5.174395 CGTCTTCAACAAAGATCATCTCCT 58.826 41.667 0.00 0.00 45.57 3.69
3206 3570 5.641209 CGTCTTCAACAAAGATCATCTCCTT 59.359 40.000 0.00 0.00 45.57 3.36
3207 3571 6.401903 CGTCTTCAACAAAGATCATCTCCTTG 60.402 42.308 0.00 0.00 45.57 3.61
3208 3572 6.429385 GTCTTCAACAAAGATCATCTCCTTGT 59.571 38.462 0.00 0.00 45.57 3.16
3209 3573 7.000472 TCTTCAACAAAGATCATCTCCTTGTT 59.000 34.615 10.52 10.52 37.71 2.83
3210 3574 7.503566 TCTTCAACAAAGATCATCTCCTTGTTT 59.496 33.333 12.86 0.15 36.08 2.83
3211 3575 7.206981 TCAACAAAGATCATCTCCTTGTTTC 57.793 36.000 12.86 0.00 36.08 2.78
3212 3576 6.772233 TCAACAAAGATCATCTCCTTGTTTCA 59.228 34.615 12.86 3.20 36.08 2.69
3213 3577 7.285172 TCAACAAAGATCATCTCCTTGTTTCAA 59.715 33.333 12.86 2.59 36.08 2.69
3214 3578 7.211966 ACAAAGATCATCTCCTTGTTTCAAG 57.788 36.000 0.00 2.90 26.47 3.02
3215 3579 7.000472 ACAAAGATCATCTCCTTGTTTCAAGA 59.000 34.615 10.54 0.00 26.47 3.02
3216 3580 7.040823 ACAAAGATCATCTCCTTGTTTCAAGAC 60.041 37.037 10.54 0.00 26.47 3.01
3217 3581 5.495640 AGATCATCTCCTTGTTTCAAGACC 58.504 41.667 10.54 0.00 0.00 3.85
3218 3582 3.664107 TCATCTCCTTGTTTCAAGACCG 58.336 45.455 10.54 0.40 0.00 4.79
3219 3583 3.071023 TCATCTCCTTGTTTCAAGACCGT 59.929 43.478 10.54 0.00 0.00 4.83
3220 3584 3.107642 TCTCCTTGTTTCAAGACCGTC 57.892 47.619 10.54 0.00 0.00 4.79
3221 3585 2.143925 CTCCTTGTTTCAAGACCGTCC 58.856 52.381 10.54 0.00 0.00 4.79
3222 3586 1.766496 TCCTTGTTTCAAGACCGTCCT 59.234 47.619 10.54 0.00 0.00 3.85
3223 3587 1.873591 CCTTGTTTCAAGACCGTCCTG 59.126 52.381 10.54 0.00 0.00 3.86
3224 3588 1.264288 CTTGTTTCAAGACCGTCCTGC 59.736 52.381 3.73 0.00 0.00 4.85
3225 3589 0.534203 TGTTTCAAGACCGTCCTGCC 60.534 55.000 0.00 0.00 0.00 4.85
3226 3590 1.072505 TTTCAAGACCGTCCTGCCC 59.927 57.895 0.00 0.00 0.00 5.36
3227 3591 1.701031 TTTCAAGACCGTCCTGCCCA 61.701 55.000 0.00 0.00 0.00 5.36
3228 3592 2.358737 CAAGACCGTCCTGCCCAC 60.359 66.667 0.00 0.00 0.00 4.61
3229 3593 2.847234 AAGACCGTCCTGCCCACA 60.847 61.111 0.00 0.00 0.00 4.17
3230 3594 3.178540 AAGACCGTCCTGCCCACAC 62.179 63.158 0.00 0.00 0.00 3.82
3231 3595 3.936203 GACCGTCCTGCCCACACA 61.936 66.667 0.00 0.00 0.00 3.72
3232 3596 3.883744 GACCGTCCTGCCCACACAG 62.884 68.421 0.00 0.00 37.42 3.66
3235 3599 4.269523 GTCCTGCCCACACAGCCA 62.270 66.667 0.00 0.00 36.29 4.75
3236 3600 3.957586 TCCTGCCCACACAGCCAG 61.958 66.667 0.00 0.00 36.29 4.85
3237 3601 3.957586 CCTGCCCACACAGCCAGA 61.958 66.667 0.00 0.00 36.29 3.86
3238 3602 2.670934 CTGCCCACACAGCCAGAC 60.671 66.667 0.00 0.00 0.00 3.51
3239 3603 3.480679 CTGCCCACACAGCCAGACA 62.481 63.158 0.00 0.00 0.00 3.41
3240 3604 2.670934 GCCCACACAGCCAGACAG 60.671 66.667 0.00 0.00 0.00 3.51
3241 3605 2.033141 CCCACACAGCCAGACAGG 59.967 66.667 0.00 0.00 41.84 4.00
3252 3616 2.457366 CCAGACAGGCGAAGTACTTT 57.543 50.000 10.02 0.00 0.00 2.66
3253 3617 2.767505 CCAGACAGGCGAAGTACTTTT 58.232 47.619 10.02 0.00 0.00 2.27
3254 3618 2.737252 CCAGACAGGCGAAGTACTTTTC 59.263 50.000 10.02 4.64 0.00 2.29
3255 3619 3.555168 CCAGACAGGCGAAGTACTTTTCT 60.555 47.826 10.02 5.16 0.00 2.52
3256 3620 3.675698 CAGACAGGCGAAGTACTTTTCTC 59.324 47.826 10.02 0.00 0.00 2.87
3257 3621 3.321111 AGACAGGCGAAGTACTTTTCTCA 59.679 43.478 10.02 0.00 0.00 3.27
3258 3622 3.391049 ACAGGCGAAGTACTTTTCTCAC 58.609 45.455 10.02 0.00 0.00 3.51
3259 3623 2.408704 CAGGCGAAGTACTTTTCTCACG 59.591 50.000 10.02 8.56 0.00 4.35
3260 3624 2.035576 AGGCGAAGTACTTTTCTCACGT 59.964 45.455 10.02 0.00 0.00 4.49
3261 3625 2.798847 GGCGAAGTACTTTTCTCACGTT 59.201 45.455 10.02 0.00 0.00 3.99
3262 3626 3.246936 GGCGAAGTACTTTTCTCACGTTT 59.753 43.478 10.02 0.00 0.00 3.60
3263 3627 4.445385 GGCGAAGTACTTTTCTCACGTTTA 59.555 41.667 10.02 0.00 0.00 2.01
3264 3628 5.361100 GCGAAGTACTTTTCTCACGTTTAC 58.639 41.667 10.02 0.00 0.00 2.01
3265 3629 5.611197 GCGAAGTACTTTTCTCACGTTTACC 60.611 44.000 10.02 0.00 0.00 2.85
3266 3630 5.459762 CGAAGTACTTTTCTCACGTTTACCA 59.540 40.000 10.02 0.00 0.00 3.25
3267 3631 6.019640 CGAAGTACTTTTCTCACGTTTACCAA 60.020 38.462 10.02 0.00 0.00 3.67
3268 3632 7.306983 CGAAGTACTTTTCTCACGTTTACCAAT 60.307 37.037 10.02 0.00 0.00 3.16
3269 3633 7.797038 AGTACTTTTCTCACGTTTACCAATT 57.203 32.000 0.00 0.00 0.00 2.32
3270 3634 8.891671 AGTACTTTTCTCACGTTTACCAATTA 57.108 30.769 0.00 0.00 0.00 1.40
3271 3635 9.328845 AGTACTTTTCTCACGTTTACCAATTAA 57.671 29.630 0.00 0.00 0.00 1.40
3272 3636 9.373750 GTACTTTTCTCACGTTTACCAATTAAC 57.626 33.333 0.00 0.00 0.00 2.01
3273 3637 8.217131 ACTTTTCTCACGTTTACCAATTAACT 57.783 30.769 0.00 0.00 0.00 2.24
3274 3638 8.680001 ACTTTTCTCACGTTTACCAATTAACTT 58.320 29.630 0.00 0.00 0.00 2.66
3275 3639 9.166126 CTTTTCTCACGTTTACCAATTAACTTC 57.834 33.333 0.00 0.00 0.00 3.01
3276 3640 6.456447 TCTCACGTTTACCAATTAACTTCG 57.544 37.500 0.00 0.00 0.00 3.79
3277 3641 5.021120 TCACGTTTACCAATTAACTTCGC 57.979 39.130 0.00 0.00 0.00 4.70
3278 3642 4.083908 TCACGTTTACCAATTAACTTCGCC 60.084 41.667 0.00 0.00 0.00 5.54
3279 3643 3.120580 ACGTTTACCAATTAACTTCGCCG 60.121 43.478 0.00 0.00 0.00 6.46
3280 3644 3.725600 CGTTTACCAATTAACTTCGCCGG 60.726 47.826 0.00 0.00 0.00 6.13
3281 3645 3.331478 TTACCAATTAACTTCGCCGGA 57.669 42.857 5.05 0.00 0.00 5.14
3282 3646 1.734163 ACCAATTAACTTCGCCGGAG 58.266 50.000 5.05 0.00 0.00 4.63
3302 3666 5.993748 GAGGGAAGGACCATCTATCTTAG 57.006 47.826 0.00 0.00 44.91 2.18
3303 3667 4.757692 AGGGAAGGACCATCTATCTTAGG 58.242 47.826 0.00 0.00 41.20 2.69
3304 3668 3.841255 GGGAAGGACCATCTATCTTAGGG 59.159 52.174 0.00 0.00 41.20 3.53
3305 3669 4.494591 GGAAGGACCATCTATCTTAGGGT 58.505 47.826 0.00 0.00 38.79 4.34
3306 3670 4.908481 GGAAGGACCATCTATCTTAGGGTT 59.092 45.833 0.00 0.00 38.79 4.11
3307 3671 5.221742 GGAAGGACCATCTATCTTAGGGTTG 60.222 48.000 0.00 0.00 38.79 3.77
3308 3672 4.235372 AGGACCATCTATCTTAGGGTTGG 58.765 47.826 0.00 0.00 30.55 3.77
3309 3673 3.328050 GGACCATCTATCTTAGGGTTGGG 59.672 52.174 0.00 0.00 30.55 4.12
3310 3674 3.327439 ACCATCTATCTTAGGGTTGGGG 58.673 50.000 0.00 0.00 0.00 4.96
3311 3675 3.050564 ACCATCTATCTTAGGGTTGGGGA 60.051 47.826 0.00 0.00 0.00 4.81
3312 3676 3.584848 CCATCTATCTTAGGGTTGGGGAG 59.415 52.174 0.00 0.00 0.00 4.30
3313 3677 3.346146 TCTATCTTAGGGTTGGGGAGG 57.654 52.381 0.00 0.00 0.00 4.30
3314 3678 2.869689 TCTATCTTAGGGTTGGGGAGGA 59.130 50.000 0.00 0.00 0.00 3.71
3315 3679 2.680439 ATCTTAGGGTTGGGGAGGAA 57.320 50.000 0.00 0.00 0.00 3.36
3316 3680 1.966845 TCTTAGGGTTGGGGAGGAAG 58.033 55.000 0.00 0.00 0.00 3.46
3317 3681 1.439543 TCTTAGGGTTGGGGAGGAAGA 59.560 52.381 0.00 0.00 0.00 2.87
3318 3682 2.157911 TCTTAGGGTTGGGGAGGAAGAA 60.158 50.000 0.00 0.00 0.00 2.52
3319 3683 1.665137 TAGGGTTGGGGAGGAAGAAC 58.335 55.000 0.00 0.00 0.00 3.01
3320 3684 1.002502 GGGTTGGGGAGGAAGAACG 60.003 63.158 0.00 0.00 0.00 3.95
3321 3685 1.002502 GGTTGGGGAGGAAGAACGG 60.003 63.158 0.00 0.00 0.00 4.44
3322 3686 1.674651 GTTGGGGAGGAAGAACGGC 60.675 63.158 0.00 0.00 0.00 5.68
3323 3687 3.248446 TTGGGGAGGAAGAACGGCG 62.248 63.158 4.80 4.80 0.00 6.46
3324 3688 4.468689 GGGGAGGAAGAACGGCGG 62.469 72.222 13.24 0.00 0.00 6.13
3339 3703 4.025401 CGGCGGTGGTGCAAGTTC 62.025 66.667 0.00 0.00 36.28 3.01
3340 3704 4.025401 GGCGGTGGTGCAAGTTCG 62.025 66.667 0.00 0.00 36.28 3.95
3341 3705 4.683334 GCGGTGGTGCAAGTTCGC 62.683 66.667 9.35 9.35 36.51 4.70
3342 3706 4.025401 CGGTGGTGCAAGTTCGCC 62.025 66.667 0.00 0.00 37.15 5.54
3343 3707 4.025401 GGTGGTGCAAGTTCGCCG 62.025 66.667 0.00 0.00 39.42 6.46
3344 3708 4.025401 GTGGTGCAAGTTCGCCGG 62.025 66.667 0.00 0.00 39.42 6.13
3345 3709 4.243008 TGGTGCAAGTTCGCCGGA 62.243 61.111 5.05 0.00 39.42 5.14
3346 3710 3.423154 GGTGCAAGTTCGCCGGAG 61.423 66.667 5.05 0.00 0.00 4.63
3347 3711 2.357034 GTGCAAGTTCGCCGGAGA 60.357 61.111 5.05 3.81 0.00 3.71
3348 3712 1.959226 GTGCAAGTTCGCCGGAGAA 60.959 57.895 17.34 17.34 0.00 2.87
3349 3713 1.227704 TGCAAGTTCGCCGGAGAAA 60.228 52.632 22.82 3.47 0.00 2.52
3350 3714 0.816018 TGCAAGTTCGCCGGAGAAAA 60.816 50.000 22.82 0.00 0.00 2.29
3351 3715 0.521735 GCAAGTTCGCCGGAGAAAAT 59.478 50.000 22.82 11.46 0.00 1.82
3352 3716 1.465856 GCAAGTTCGCCGGAGAAAATC 60.466 52.381 22.82 10.44 0.00 2.17
3353 3717 2.076863 CAAGTTCGCCGGAGAAAATCT 58.923 47.619 22.82 12.65 0.00 2.40
3354 3718 2.011540 AGTTCGCCGGAGAAAATCTC 57.988 50.000 22.82 9.68 42.66 2.75
3364 3728 1.943340 GAGAAAATCTCCATCCGTGCC 59.057 52.381 0.00 0.00 37.55 5.01
3365 3729 0.657840 GAAAATCTCCATCCGTGCCG 59.342 55.000 0.00 0.00 0.00 5.69
3366 3730 0.035439 AAAATCTCCATCCGTGCCGT 60.035 50.000 0.00 0.00 0.00 5.68
3367 3731 0.744414 AAATCTCCATCCGTGCCGTG 60.744 55.000 0.00 0.00 0.00 4.94
3368 3732 3.740128 ATCTCCATCCGTGCCGTGC 62.740 63.158 0.00 0.00 0.00 5.34
3806 4170 3.090952 CACGGAGAAGCAATCTAGGAG 57.909 52.381 0.00 0.00 38.96 3.69
3807 4171 2.690497 CACGGAGAAGCAATCTAGGAGA 59.310 50.000 0.00 0.00 38.96 3.71
3808 4172 3.320541 CACGGAGAAGCAATCTAGGAGAT 59.679 47.826 0.00 0.00 38.96 2.75
3809 4173 3.964031 ACGGAGAAGCAATCTAGGAGATT 59.036 43.478 0.00 0.00 45.23 2.40
3823 4187 9.835389 AATCTAGGAGATTGAAGAAGAAATCTG 57.165 33.333 2.79 0.00 42.90 2.90
3824 4188 8.372877 TCTAGGAGATTGAAGAAGAAATCTGT 57.627 34.615 2.79 0.00 41.96 3.41
3825 4189 8.256605 TCTAGGAGATTGAAGAAGAAATCTGTG 58.743 37.037 2.79 0.00 41.96 3.66
3826 4190 5.647225 AGGAGATTGAAGAAGAAATCTGTGC 59.353 40.000 2.79 0.00 41.96 4.57
3827 4191 5.163673 GGAGATTGAAGAAGAAATCTGTGCC 60.164 44.000 2.79 0.00 41.96 5.01
3828 4192 4.394300 AGATTGAAGAAGAAATCTGTGCCG 59.606 41.667 0.00 0.00 40.71 5.69
3829 4193 3.126001 TGAAGAAGAAATCTGTGCCGT 57.874 42.857 0.00 0.00 38.79 5.68
3830 4194 3.476552 TGAAGAAGAAATCTGTGCCGTT 58.523 40.909 0.00 0.00 38.79 4.44
3831 4195 3.498397 TGAAGAAGAAATCTGTGCCGTTC 59.502 43.478 0.00 0.00 38.79 3.95
3832 4196 3.126001 AGAAGAAATCTGTGCCGTTCA 57.874 42.857 0.00 0.00 36.88 3.18
3833 4197 3.679389 AGAAGAAATCTGTGCCGTTCAT 58.321 40.909 0.00 0.00 36.88 2.57
3834 4198 4.074970 AGAAGAAATCTGTGCCGTTCATT 58.925 39.130 0.00 0.00 36.88 2.57
3835 4199 4.520492 AGAAGAAATCTGTGCCGTTCATTT 59.480 37.500 0.00 0.00 36.88 2.32
3836 4200 4.425577 AGAAATCTGTGCCGTTCATTTC 57.574 40.909 0.00 0.00 0.00 2.17
3837 4201 2.900122 AATCTGTGCCGTTCATTTCG 57.100 45.000 0.00 0.00 0.00 3.46
3838 4202 0.447801 ATCTGTGCCGTTCATTTCGC 59.552 50.000 0.00 0.00 0.00 4.70
3839 4203 0.882484 TCTGTGCCGTTCATTTCGCA 60.882 50.000 0.00 0.00 0.00 5.10
3840 4204 0.168788 CTGTGCCGTTCATTTCGCAT 59.831 50.000 0.00 0.00 0.00 4.73
3841 4205 0.167908 TGTGCCGTTCATTTCGCATC 59.832 50.000 0.00 0.00 0.00 3.91
3842 4206 0.523335 GTGCCGTTCATTTCGCATCC 60.523 55.000 0.00 0.00 0.00 3.51
3843 4207 0.957888 TGCCGTTCATTTCGCATCCA 60.958 50.000 0.00 0.00 0.00 3.41
3844 4208 0.170116 GCCGTTCATTTCGCATCCAA 59.830 50.000 0.00 0.00 0.00 3.53
3845 4209 1.202290 GCCGTTCATTTCGCATCCAAT 60.202 47.619 0.00 0.00 0.00 3.16
3846 4210 2.453080 CCGTTCATTTCGCATCCAATG 58.547 47.619 0.00 0.00 0.00 2.82
3847 4211 2.453080 CGTTCATTTCGCATCCAATGG 58.547 47.619 0.00 0.00 32.17 3.16
3848 4212 2.195922 GTTCATTTCGCATCCAATGGC 58.804 47.619 0.00 0.00 32.17 4.40
3849 4213 1.766494 TCATTTCGCATCCAATGGCT 58.234 45.000 0.00 0.00 32.17 4.75
3850 4214 1.406180 TCATTTCGCATCCAATGGCTG 59.594 47.619 0.00 0.00 32.17 4.85
3851 4215 1.406180 CATTTCGCATCCAATGGCTGA 59.594 47.619 7.38 0.00 0.00 4.26
3852 4216 1.097232 TTTCGCATCCAATGGCTGAG 58.903 50.000 7.38 3.72 0.00 3.35
3853 4217 0.252761 TTCGCATCCAATGGCTGAGA 59.747 50.000 7.38 6.37 0.00 3.27
3854 4218 0.252761 TCGCATCCAATGGCTGAGAA 59.747 50.000 7.38 0.00 25.92 2.87
3855 4219 1.097232 CGCATCCAATGGCTGAGAAA 58.903 50.000 7.38 0.00 0.00 2.52
3856 4220 1.473677 CGCATCCAATGGCTGAGAAAA 59.526 47.619 7.38 0.00 0.00 2.29
3857 4221 2.100252 CGCATCCAATGGCTGAGAAAAT 59.900 45.455 7.38 0.00 0.00 1.82
3858 4222 3.714391 GCATCCAATGGCTGAGAAAATC 58.286 45.455 7.38 0.00 0.00 2.17
3859 4223 3.794475 GCATCCAATGGCTGAGAAAATCG 60.794 47.826 7.38 0.00 0.00 3.34
3860 4224 3.348647 TCCAATGGCTGAGAAAATCGA 57.651 42.857 0.00 0.00 0.00 3.59
3861 4225 3.009723 TCCAATGGCTGAGAAAATCGAC 58.990 45.455 0.00 0.00 0.00 4.20
3862 4226 2.223112 CCAATGGCTGAGAAAATCGACG 60.223 50.000 0.00 0.00 0.00 5.12
3863 4227 1.656652 ATGGCTGAGAAAATCGACGG 58.343 50.000 0.00 0.00 0.00 4.79
3864 4228 0.606096 TGGCTGAGAAAATCGACGGA 59.394 50.000 0.00 0.00 0.00 4.69
3865 4229 1.000145 GGCTGAGAAAATCGACGGAC 59.000 55.000 0.00 0.00 0.00 4.79
3866 4230 1.000145 GCTGAGAAAATCGACGGACC 59.000 55.000 0.00 0.00 0.00 4.46
3867 4231 1.641577 CTGAGAAAATCGACGGACCC 58.358 55.000 0.00 0.00 0.00 4.46
3868 4232 1.204941 CTGAGAAAATCGACGGACCCT 59.795 52.381 0.00 0.00 0.00 4.34
3869 4233 2.426024 CTGAGAAAATCGACGGACCCTA 59.574 50.000 0.00 0.00 0.00 3.53
3870 4234 2.827322 TGAGAAAATCGACGGACCCTAA 59.173 45.455 0.00 0.00 0.00 2.69
3871 4235 3.449737 TGAGAAAATCGACGGACCCTAAT 59.550 43.478 0.00 0.00 0.00 1.73
3872 4236 4.081309 TGAGAAAATCGACGGACCCTAATT 60.081 41.667 0.00 0.00 0.00 1.40
3873 4237 4.840271 AGAAAATCGACGGACCCTAATTT 58.160 39.130 0.00 0.00 0.00 1.82
3874 4238 4.634443 AGAAAATCGACGGACCCTAATTTG 59.366 41.667 0.00 0.00 0.00 2.32
3875 4239 3.622166 AATCGACGGACCCTAATTTGT 57.378 42.857 0.00 0.00 0.00 2.83
3876 4240 3.622166 ATCGACGGACCCTAATTTGTT 57.378 42.857 0.00 0.00 0.00 2.83
3877 4241 3.405823 TCGACGGACCCTAATTTGTTT 57.594 42.857 0.00 0.00 0.00 2.83
3878 4242 3.742385 TCGACGGACCCTAATTTGTTTT 58.258 40.909 0.00 0.00 0.00 2.43
3879 4243 4.136051 TCGACGGACCCTAATTTGTTTTT 58.864 39.130 0.00 0.00 0.00 1.94
3899 4263 4.712122 TTTCAACTGACAACCTTGTTCC 57.288 40.909 0.00 0.00 42.43 3.62
3900 4264 3.644966 TCAACTGACAACCTTGTTCCT 57.355 42.857 0.00 0.00 42.43 3.36
3901 4265 3.963129 TCAACTGACAACCTTGTTCCTT 58.037 40.909 0.00 0.00 42.43 3.36
3902 4266 4.340617 TCAACTGACAACCTTGTTCCTTT 58.659 39.130 0.00 0.00 42.43 3.11
3903 4267 4.398044 TCAACTGACAACCTTGTTCCTTTC 59.602 41.667 0.00 0.00 42.43 2.62
3904 4268 2.943033 ACTGACAACCTTGTTCCTTTCG 59.057 45.455 0.00 0.00 42.43 3.46
3905 4269 2.943033 CTGACAACCTTGTTCCTTTCGT 59.057 45.455 0.00 0.00 42.43 3.85
3906 4270 2.680841 TGACAACCTTGTTCCTTTCGTG 59.319 45.455 0.00 0.00 42.43 4.35
3907 4271 2.681344 GACAACCTTGTTCCTTTCGTGT 59.319 45.455 0.00 0.00 42.43 4.49
3908 4272 2.681344 ACAACCTTGTTCCTTTCGTGTC 59.319 45.455 0.00 0.00 38.47 3.67
3909 4273 2.680841 CAACCTTGTTCCTTTCGTGTCA 59.319 45.455 0.00 0.00 0.00 3.58
3910 4274 2.561569 ACCTTGTTCCTTTCGTGTCAG 58.438 47.619 0.00 0.00 0.00 3.51
3911 4275 1.264288 CCTTGTTCCTTTCGTGTCAGC 59.736 52.381 0.00 0.00 0.00 4.26
3912 4276 0.934496 TTGTTCCTTTCGTGTCAGCG 59.066 50.000 0.00 0.00 0.00 5.18
3913 4277 0.103390 TGTTCCTTTCGTGTCAGCGA 59.897 50.000 0.00 0.00 39.28 4.93
3914 4278 0.507358 GTTCCTTTCGTGTCAGCGAC 59.493 55.000 0.00 2.32 40.85 5.19
3915 4279 0.599204 TTCCTTTCGTGTCAGCGACC 60.599 55.000 6.30 0.00 40.85 4.79
3916 4280 1.300620 CCTTTCGTGTCAGCGACCA 60.301 57.895 6.30 0.00 40.85 4.02
3917 4281 0.670546 CCTTTCGTGTCAGCGACCAT 60.671 55.000 6.30 0.00 40.85 3.55
3918 4282 1.403647 CCTTTCGTGTCAGCGACCATA 60.404 52.381 6.30 0.00 40.85 2.74
3919 4283 2.540515 CTTTCGTGTCAGCGACCATAT 58.459 47.619 6.30 0.00 40.85 1.78
3920 4284 1.921243 TTCGTGTCAGCGACCATATG 58.079 50.000 0.00 0.00 40.85 1.78
3921 4285 0.527600 TCGTGTCAGCGACCATATGC 60.528 55.000 0.00 0.00 35.83 3.14
3922 4286 0.805711 CGTGTCAGCGACCATATGCA 60.806 55.000 0.00 0.00 0.00 3.96
3923 4287 1.586422 GTGTCAGCGACCATATGCAT 58.414 50.000 3.79 3.79 0.00 3.96
3924 4288 1.262417 GTGTCAGCGACCATATGCATG 59.738 52.381 10.16 0.00 0.00 4.06
3925 4289 1.134431 TGTCAGCGACCATATGCATGT 60.134 47.619 10.16 0.00 0.00 3.21
3926 4290 1.262417 GTCAGCGACCATATGCATGTG 59.738 52.381 15.95 15.95 0.00 3.21
3927 4291 0.040692 CAGCGACCATATGCATGTGC 60.041 55.000 17.32 6.64 42.50 4.57
3944 4308 4.822036 TGTGCAACCTTGTACATGTTAC 57.178 40.909 2.30 0.95 46.36 2.50
3945 4309 4.200092 TGTGCAACCTTGTACATGTTACA 58.800 39.130 2.30 3.82 46.36 2.41
3946 4310 4.640647 TGTGCAACCTTGTACATGTTACAA 59.359 37.500 2.30 11.51 46.36 2.41
3947 4311 5.125578 TGTGCAACCTTGTACATGTTACAAA 59.874 36.000 2.30 5.83 46.36 2.83
3948 4312 5.685511 GTGCAACCTTGTACATGTTACAAAG 59.314 40.000 2.30 9.04 42.35 2.77
3949 4313 5.590663 TGCAACCTTGTACATGTTACAAAGA 59.409 36.000 2.30 0.00 37.04 2.52
3950 4314 6.264292 TGCAACCTTGTACATGTTACAAAGAT 59.736 34.615 2.30 0.00 37.04 2.40
3951 4315 6.582295 GCAACCTTGTACATGTTACAAAGATG 59.418 38.462 2.30 11.68 37.04 2.90
3952 4316 6.254281 ACCTTGTACATGTTACAAAGATGC 57.746 37.500 2.30 0.00 37.04 3.91
3953 4317 5.767665 ACCTTGTACATGTTACAAAGATGCA 59.232 36.000 2.30 0.00 37.04 3.96
3954 4318 6.434028 ACCTTGTACATGTTACAAAGATGCAT 59.566 34.615 2.30 0.00 37.04 3.96
3955 4319 6.748658 CCTTGTACATGTTACAAAGATGCATG 59.251 38.462 2.46 0.00 41.67 4.06
3957 4321 6.610456 TGTACATGTTACAAAGATGCATGTG 58.390 36.000 2.46 1.57 46.27 3.21
3958 4322 5.963176 ACATGTTACAAAGATGCATGTGA 57.037 34.783 2.46 0.00 45.46 3.58
3959 4323 6.519679 ACATGTTACAAAGATGCATGTGAT 57.480 33.333 2.46 0.00 45.46 3.06
3960 4324 6.327154 ACATGTTACAAAGATGCATGTGATG 58.673 36.000 2.46 6.12 45.46 3.07
3995 4359 9.791820 TCTTGCATACAATATTCAACAATCTTG 57.208 29.630 0.00 0.00 34.61 3.02
3996 4360 9.577110 CTTGCATACAATATTCAACAATCTTGT 57.423 29.630 0.00 4.50 40.54 3.16
3997 4361 9.571810 TTGCATACAATATTCAACAATCTTGTC 57.428 29.630 0.00 0.00 41.31 3.18
3998 4362 8.959548 TGCATACAATATTCAACAATCTTGTCT 58.040 29.630 0.00 0.00 41.31 3.41
3999 4363 9.229784 GCATACAATATTCAACAATCTTGTCTG 57.770 33.333 0.00 5.05 41.31 3.51
4002 4366 8.169977 ACAATATTCAACAATCTTGTCTGTGT 57.830 30.769 0.00 0.00 41.31 3.72
4003 4367 8.292448 ACAATATTCAACAATCTTGTCTGTGTC 58.708 33.333 0.00 0.00 41.31 3.67
4004 4368 7.984422 ATATTCAACAATCTTGTCTGTGTCA 57.016 32.000 0.00 0.00 41.31 3.58
4005 4369 5.739752 TTCAACAATCTTGTCTGTGTCAG 57.260 39.130 0.00 0.00 41.31 3.51
4006 4370 4.769688 TCAACAATCTTGTCTGTGTCAGT 58.230 39.130 0.00 0.00 41.31 3.41
4007 4371 4.571984 TCAACAATCTTGTCTGTGTCAGTG 59.428 41.667 0.00 0.00 41.31 3.66
4008 4372 2.874701 ACAATCTTGTCTGTGTCAGTGC 59.125 45.455 0.00 0.00 36.50 4.40
4009 4373 2.175878 ATCTTGTCTGTGTCAGTGCC 57.824 50.000 0.00 0.00 32.61 5.01
4010 4374 0.829990 TCTTGTCTGTGTCAGTGCCA 59.170 50.000 0.00 0.00 32.61 4.92
4011 4375 1.209261 TCTTGTCTGTGTCAGTGCCAA 59.791 47.619 0.00 0.00 32.61 4.52
4012 4376 1.600957 CTTGTCTGTGTCAGTGCCAAG 59.399 52.381 9.81 9.81 32.11 3.61
4013 4377 0.541392 TGTCTGTGTCAGTGCCAAGT 59.459 50.000 0.00 0.00 32.61 3.16
4014 4378 0.940126 GTCTGTGTCAGTGCCAAGTG 59.060 55.000 0.00 0.00 32.61 3.16
4015 4379 0.541392 TCTGTGTCAGTGCCAAGTGT 59.459 50.000 0.00 0.00 32.61 3.55
4016 4380 0.659427 CTGTGTCAGTGCCAAGTGTG 59.341 55.000 0.00 0.00 0.00 3.82
4017 4381 4.950208 TCTGTGTCAGTGCCAAGTGTGG 62.950 54.545 0.00 0.00 39.18 4.17
4018 4382 1.152984 TGTCAGTGCCAAGTGTGGG 60.153 57.895 0.00 0.00 46.09 4.61
4019 4383 1.152963 GTCAGTGCCAAGTGTGGGT 60.153 57.895 0.00 0.00 46.09 4.51
4020 4384 0.107831 GTCAGTGCCAAGTGTGGGTA 59.892 55.000 0.00 0.00 46.09 3.69
4021 4385 1.064003 TCAGTGCCAAGTGTGGGTAT 58.936 50.000 0.00 0.00 46.09 2.73
4022 4386 1.167851 CAGTGCCAAGTGTGGGTATG 58.832 55.000 0.00 0.00 46.09 2.39
4023 4387 0.609131 AGTGCCAAGTGTGGGTATGC 60.609 55.000 0.00 0.00 46.09 3.14
4024 4388 0.893270 GTGCCAAGTGTGGGTATGCA 60.893 55.000 0.00 0.00 46.09 3.96
4025 4389 0.039472 TGCCAAGTGTGGGTATGCAT 59.961 50.000 3.79 3.79 46.09 3.96
4026 4390 0.740737 GCCAAGTGTGGGTATGCATC 59.259 55.000 0.19 0.00 46.09 3.91
4027 4391 1.954733 GCCAAGTGTGGGTATGCATCA 60.955 52.381 0.19 0.00 46.09 3.07
4028 4392 2.445427 CCAAGTGTGGGTATGCATCAA 58.555 47.619 0.19 0.00 41.77 2.57
4029 4393 3.025978 CCAAGTGTGGGTATGCATCAAT 58.974 45.455 0.19 0.00 41.77 2.57
4030 4394 3.181484 CCAAGTGTGGGTATGCATCAATG 60.181 47.826 0.19 0.00 41.77 2.82
4031 4395 3.370840 AGTGTGGGTATGCATCAATGT 57.629 42.857 0.19 0.00 0.00 2.71
4032 4396 4.502105 AGTGTGGGTATGCATCAATGTA 57.498 40.909 0.19 0.00 0.00 2.29
4033 4397 5.052693 AGTGTGGGTATGCATCAATGTAT 57.947 39.130 0.19 0.00 36.98 2.29
4034 4398 6.186420 AGTGTGGGTATGCATCAATGTATA 57.814 37.500 0.19 0.00 34.85 1.47
4035 4399 6.782986 AGTGTGGGTATGCATCAATGTATAT 58.217 36.000 0.19 0.00 37.61 0.86
4036 4400 7.917003 AGTGTGGGTATGCATCAATGTATATA 58.083 34.615 0.19 0.00 37.61 0.86
4037 4401 8.551440 AGTGTGGGTATGCATCAATGTATATAT 58.449 33.333 0.19 0.00 37.61 0.86
4038 4402 9.177608 GTGTGGGTATGCATCAATGTATATATT 57.822 33.333 0.19 0.00 37.61 1.28
4059 4423 3.512033 ATCCAGTGAGAGTAAACGAGC 57.488 47.619 0.00 0.00 0.00 5.03
4060 4424 2.515854 TCCAGTGAGAGTAAACGAGCT 58.484 47.619 0.00 0.00 0.00 4.09
4061 4425 3.682696 TCCAGTGAGAGTAAACGAGCTA 58.317 45.455 0.00 0.00 0.00 3.32
4062 4426 3.439476 TCCAGTGAGAGTAAACGAGCTAC 59.561 47.826 0.00 0.00 0.00 3.58
4063 4427 3.427773 CCAGTGAGAGTAAACGAGCTACC 60.428 52.174 0.00 0.00 0.00 3.18
4064 4428 3.190744 CAGTGAGAGTAAACGAGCTACCA 59.809 47.826 0.00 0.00 0.00 3.25
4065 4429 3.825014 AGTGAGAGTAAACGAGCTACCAA 59.175 43.478 0.00 0.00 0.00 3.67
4066 4430 4.463186 AGTGAGAGTAAACGAGCTACCAAT 59.537 41.667 0.00 0.00 0.00 3.16
4067 4431 4.799428 GTGAGAGTAAACGAGCTACCAATC 59.201 45.833 0.00 0.00 0.00 2.67
4068 4432 4.030134 AGAGTAAACGAGCTACCAATCG 57.970 45.455 0.00 0.00 44.36 3.34
4069 4433 3.693085 AGAGTAAACGAGCTACCAATCGA 59.307 43.478 1.13 0.00 41.40 3.59
4070 4434 4.338682 AGAGTAAACGAGCTACCAATCGAT 59.661 41.667 1.13 0.00 41.40 3.59
4071 4435 5.530171 AGAGTAAACGAGCTACCAATCGATA 59.470 40.000 0.00 0.00 41.40 2.92
4072 4436 6.039047 AGAGTAAACGAGCTACCAATCGATAA 59.961 38.462 0.00 0.00 41.40 1.75
4073 4437 6.207213 AGTAAACGAGCTACCAATCGATAAG 58.793 40.000 0.00 0.00 41.40 1.73
4074 4438 3.014604 ACGAGCTACCAATCGATAAGC 57.985 47.619 0.00 6.12 41.40 3.09
4075 4439 2.623889 ACGAGCTACCAATCGATAAGCT 59.376 45.455 18.75 18.75 45.82 3.74
4076 4440 2.983136 CGAGCTACCAATCGATAAGCTG 59.017 50.000 21.89 8.19 43.31 4.24
4077 4441 3.321497 GAGCTACCAATCGATAAGCTGG 58.679 50.000 21.89 17.33 43.31 4.85
4078 4442 2.700897 AGCTACCAATCGATAAGCTGGT 59.299 45.455 20.31 20.31 41.78 4.00
4079 4443 3.060602 GCTACCAATCGATAAGCTGGTC 58.939 50.000 20.12 6.40 41.30 4.02
4080 4444 2.622064 ACCAATCGATAAGCTGGTCC 57.378 50.000 12.74 0.00 37.66 4.46
4081 4445 1.141053 ACCAATCGATAAGCTGGTCCC 59.859 52.381 12.74 0.00 37.66 4.46
4082 4446 1.417890 CCAATCGATAAGCTGGTCCCT 59.582 52.381 0.00 0.00 0.00 4.20
4083 4447 2.548920 CCAATCGATAAGCTGGTCCCTC 60.549 54.545 0.00 0.00 0.00 4.30
4084 4448 2.088104 ATCGATAAGCTGGTCCCTCA 57.912 50.000 0.00 0.00 0.00 3.86
4085 4449 1.403814 TCGATAAGCTGGTCCCTCAG 58.596 55.000 0.00 0.00 37.79 3.35
4086 4450 1.063942 TCGATAAGCTGGTCCCTCAGA 60.064 52.381 0.00 0.00 36.93 3.27
4087 4451 1.967066 CGATAAGCTGGTCCCTCAGAT 59.033 52.381 0.00 0.00 36.93 2.90
4088 4452 2.288702 CGATAAGCTGGTCCCTCAGATG 60.289 54.545 0.00 0.00 36.93 2.90
4089 4453 2.550277 TAAGCTGGTCCCTCAGATGA 57.450 50.000 0.00 0.00 36.93 2.92
4090 4454 1.661463 AAGCTGGTCCCTCAGATGAA 58.339 50.000 0.00 0.00 36.93 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
399 400 0.913205 TTGCGGCATTAGGGTTAGGA 59.087 50.000 2.28 0.00 0.00 2.94
427 428 5.369699 CCCTTCTCCCTTGTTATTCATAGGA 59.630 44.000 0.00 0.00 31.02 2.94
580 581 1.896660 GGCCCGTCACTTTGCTTCA 60.897 57.895 0.00 0.00 0.00 3.02
866 868 4.816786 TTGATTCCGTGTATGATGCATG 57.183 40.909 2.46 0.00 0.00 4.06
880 882 5.508489 CCATGTGCCATATGAGTTTGATTCC 60.508 44.000 3.65 0.00 0.00 3.01
890 892 5.565455 TGATAACTCCATGTGCCATATGA 57.435 39.130 3.65 0.00 0.00 2.15
891 893 7.108194 AGTATGATAACTCCATGTGCCATATG 58.892 38.462 0.00 0.00 0.00 1.78
897 899 6.346477 TCCTAGTATGATAACTCCATGTGC 57.654 41.667 0.00 0.00 0.00 4.57
919 921 4.591072 AGTAGTCCAGCTAGATGGGAAATC 59.409 45.833 26.26 13.13 41.01 2.17
933 1177 5.652891 ACTAACATGTACTCCAGTAGTCCAG 59.347 44.000 0.00 0.00 39.80 3.86
934 1178 5.577100 ACTAACATGTACTCCAGTAGTCCA 58.423 41.667 0.00 0.00 39.80 4.02
935 1179 6.331061 CAACTAACATGTACTCCAGTAGTCC 58.669 44.000 0.00 0.00 39.80 3.85
936 1180 6.331061 CCAACTAACATGTACTCCAGTAGTC 58.669 44.000 0.00 0.00 39.80 2.59
937 1181 5.187186 CCCAACTAACATGTACTCCAGTAGT 59.813 44.000 0.00 0.00 42.62 2.73
938 1182 5.421056 TCCCAACTAACATGTACTCCAGTAG 59.579 44.000 0.00 0.00 0.00 2.57
939 1183 5.335261 TCCCAACTAACATGTACTCCAGTA 58.665 41.667 0.00 0.00 0.00 2.74
940 1184 4.164981 TCCCAACTAACATGTACTCCAGT 58.835 43.478 0.00 0.00 0.00 4.00
941 1185 4.223032 ACTCCCAACTAACATGTACTCCAG 59.777 45.833 0.00 0.00 0.00 3.86
942 1186 4.164981 ACTCCCAACTAACATGTACTCCA 58.835 43.478 0.00 0.00 0.00 3.86
943 1187 4.677250 CGACTCCCAACTAACATGTACTCC 60.677 50.000 0.00 0.00 0.00 3.85
944 1188 4.157289 TCGACTCCCAACTAACATGTACTC 59.843 45.833 0.00 0.00 0.00 2.59
945 1189 4.084287 TCGACTCCCAACTAACATGTACT 58.916 43.478 0.00 0.00 0.00 2.73
946 1190 4.082354 ACTCGACTCCCAACTAACATGTAC 60.082 45.833 0.00 0.00 0.00 2.90
947 1191 4.082408 CACTCGACTCCCAACTAACATGTA 60.082 45.833 0.00 0.00 0.00 2.29
948 1192 2.897969 ACTCGACTCCCAACTAACATGT 59.102 45.455 0.00 0.00 0.00 3.21
949 1193 3.254060 CACTCGACTCCCAACTAACATG 58.746 50.000 0.00 0.00 0.00 3.21
950 1194 2.233922 CCACTCGACTCCCAACTAACAT 59.766 50.000 0.00 0.00 0.00 2.71
951 1195 1.616865 CCACTCGACTCCCAACTAACA 59.383 52.381 0.00 0.00 0.00 2.41
952 1196 1.067071 CCCACTCGACTCCCAACTAAC 60.067 57.143 0.00 0.00 0.00 2.34
953 1197 1.263356 CCCACTCGACTCCCAACTAA 58.737 55.000 0.00 0.00 0.00 2.24
979 1223 1.735386 TCGAGAGGAACGAGACGATT 58.265 50.000 0.00 0.00 34.85 3.34
1077 1324 1.450491 GGCGAAGAGAAAGAGGGCC 60.450 63.158 0.00 0.00 0.00 5.80
1086 1333 3.217017 CGGATCCCGGCGAAGAGA 61.217 66.667 9.30 0.00 44.15 3.10
1544 1803 1.268032 CCTTGTTGAACACTGTGTCGC 60.268 52.381 14.68 10.05 0.00 5.19
1560 1819 0.108424 CCTCGTCCAGCTCTTCCTTG 60.108 60.000 0.00 0.00 0.00 3.61
1561 1820 0.251832 TCCTCGTCCAGCTCTTCCTT 60.252 55.000 0.00 0.00 0.00 3.36
1565 1824 0.827368 GGATTCCTCGTCCAGCTCTT 59.173 55.000 0.00 0.00 35.76 2.85
1570 1832 0.978146 ACCAGGGATTCCTCGTCCAG 60.978 60.000 2.01 0.00 42.67 3.86
1678 1952 0.249405 AACAGCATTTTGGTGGTGCG 60.249 50.000 10.99 0.00 45.03 5.34
1693 1973 1.656652 CATAGCTTCACCCGGAACAG 58.343 55.000 0.73 0.00 0.00 3.16
1696 1976 1.223487 GCCATAGCTTCACCCGGAA 59.777 57.895 0.73 0.00 35.50 4.30
1804 2084 1.024579 ATGGCGAACGGCGAGAAAAT 61.025 50.000 16.62 0.00 44.92 1.82
1807 2087 2.047655 AATGGCGAACGGCGAGAA 60.048 55.556 16.62 0.00 44.92 2.87
1836 2116 2.334838 CCGACGAGGTTAAACAAGAGG 58.665 52.381 0.00 0.00 34.51 3.69
2049 2332 3.722147 GACATGGTGAAGATATGCGACT 58.278 45.455 0.00 0.00 0.00 4.18
2068 2351 0.038159 CCTCCTCCAACACTCACGAC 60.038 60.000 0.00 0.00 0.00 4.34
2076 2359 2.592993 CCGGCTTCCTCCTCCAACA 61.593 63.158 0.00 0.00 0.00 3.33
2079 2362 1.684734 GTACCGGCTTCCTCCTCCA 60.685 63.158 0.00 0.00 0.00 3.86
2162 2454 0.035056 AGGCCTGGTGAATGCACTAC 60.035 55.000 3.11 0.00 44.52 2.73
2163 2455 0.253044 GAGGCCTGGTGAATGCACTA 59.747 55.000 12.00 0.00 44.52 2.74
2187 2488 3.131046 CCACTATTTTGGACAATCTGCCC 59.869 47.826 0.00 0.00 39.24 5.36
2193 2494 3.099141 CAGCCCCACTATTTTGGACAAT 58.901 45.455 0.00 0.00 39.24 2.71
2197 2498 0.334676 CCCAGCCCCACTATTTTGGA 59.665 55.000 0.00 0.00 39.24 3.53
2277 2587 1.761449 TGCGCATATGTTGGGTGATT 58.239 45.000 5.66 0.00 40.30 2.57
2281 2591 1.134753 CATGTTGCGCATATGTTGGGT 59.865 47.619 12.75 0.00 40.30 4.51
2298 2608 2.423373 CCCTTCCCCTTCCATGTACATG 60.423 54.545 26.02 26.02 38.51 3.21
2316 2638 1.580059 TTCCCAGCGAGTTAATCCCT 58.420 50.000 0.00 0.00 0.00 4.20
2322 2644 1.757118 CTGAGGATTCCCAGCGAGTTA 59.243 52.381 0.00 0.00 33.88 2.24
2328 2650 0.620556 TTGTCCTGAGGATTCCCAGC 59.379 55.000 3.65 0.00 32.73 4.85
2337 2659 3.081554 CCCCACCTTGTCCTGAGG 58.918 66.667 0.00 0.00 40.24 3.86
2345 2667 2.359975 GTTCCTCGCCCCACCTTG 60.360 66.667 0.00 0.00 0.00 3.61
2346 2668 3.647771 GGTTCCTCGCCCCACCTT 61.648 66.667 0.00 0.00 0.00 3.50
2388 2716 3.396685 AGAGAGTCCTTGAGTATGCCT 57.603 47.619 0.00 0.00 0.00 4.75
2406 2734 1.974957 TCCTGGAATTCGACACCAAGA 59.025 47.619 0.00 3.30 33.14 3.02
2409 2737 1.001974 CACTCCTGGAATTCGACACCA 59.998 52.381 0.00 4.70 0.00 4.17
2418 2746 3.394940 AGATGATGATGCACTCCTGGAAT 59.605 43.478 0.00 0.00 0.00 3.01
2457 2785 0.241213 TGCTCTTGACGAGGAAGACG 59.759 55.000 0.00 0.00 37.13 4.18
2486 2814 3.827898 GTGACGCCTCCTCCTCGG 61.828 72.222 0.00 0.00 0.00 4.63
2487 2815 2.752238 AGTGACGCCTCCTCCTCG 60.752 66.667 0.00 0.00 0.00 4.63
2490 2818 2.750637 TCGAGTGACGCCTCCTCC 60.751 66.667 0.00 0.00 42.26 4.30
2565 2893 0.618680 AGAGCCCTGGTAGCATGTCA 60.619 55.000 0.00 0.00 0.00 3.58
2586 2914 2.802816 CCGTTGATACAGCCTATTCTGC 59.197 50.000 0.00 0.00 37.59 4.26
2592 2920 1.754803 CAGGTCCGTTGATACAGCCTA 59.245 52.381 0.00 0.00 0.00 3.93
2636 2973 3.140141 TGCTTTGGCGCCTATGGC 61.140 61.111 29.70 24.98 46.75 4.40
2683 3029 1.953138 GATCATCGTGCAGGCGGAG 60.953 63.158 0.35 0.00 0.00 4.63
2764 3122 2.071778 TGGCTGAAACCTTTGCTCTT 57.928 45.000 0.00 0.00 0.00 2.85
2775 3133 1.744798 CGAGGAGCATCATGGCTGAAA 60.745 52.381 0.79 0.00 45.99 2.69
2843 3201 1.816537 GAGTCAGCCGTGCCATCTA 59.183 57.895 0.00 0.00 0.00 1.98
3024 3385 6.639563 AGCTAACTGATCCTTCTCTTCTTTC 58.360 40.000 0.00 0.00 0.00 2.62
3028 3389 7.324178 TGTAAAGCTAACTGATCCTTCTCTTC 58.676 38.462 0.00 0.00 0.00 2.87
3046 3407 3.181496 GCTAATGCCTGTCCTTGTAAAGC 60.181 47.826 0.00 0.00 44.44 3.51
3049 3410 5.429681 TTAGCTAATGCCTGTCCTTGTAA 57.570 39.130 0.86 0.00 40.80 2.41
3065 3426 4.752063 TCTCCCTGCCTGAATATTAGCTA 58.248 43.478 0.00 0.00 0.00 3.32
3069 3430 5.786975 TCATCATCTCCCTGCCTGAATATTA 59.213 40.000 0.00 0.00 0.00 0.98
3070 3431 4.600547 TCATCATCTCCCTGCCTGAATATT 59.399 41.667 0.00 0.00 0.00 1.28
3071 3432 4.173594 TCATCATCTCCCTGCCTGAATAT 58.826 43.478 0.00 0.00 0.00 1.28
3072 3433 3.590714 TCATCATCTCCCTGCCTGAATA 58.409 45.455 0.00 0.00 0.00 1.75
3073 3434 2.415624 TCATCATCTCCCTGCCTGAAT 58.584 47.619 0.00 0.00 0.00 2.57
3074 3435 1.883678 TCATCATCTCCCTGCCTGAA 58.116 50.000 0.00 0.00 0.00 3.02
3093 3454 4.569761 ACGCGTGAGAACTATACATCAT 57.430 40.909 12.93 0.00 0.00 2.45
3095 3456 5.093169 AGTACGCGTGAGAACTATACATC 57.907 43.478 24.59 0.00 0.00 3.06
3096 3457 5.333952 GCTAGTACGCGTGAGAACTATACAT 60.334 44.000 24.59 0.00 0.00 2.29
3097 3458 4.025396 GCTAGTACGCGTGAGAACTATACA 60.025 45.833 24.59 0.83 0.00 2.29
3098 3459 4.025396 TGCTAGTACGCGTGAGAACTATAC 60.025 45.833 24.59 15.58 0.00 1.47
3112 3473 9.478019 CAAAGAAGATAAAATTGTGCTAGTACG 57.522 33.333 6.48 0.00 0.00 3.67
3129 3490 7.114754 TCAGCCTTCATGAATACAAAGAAGAT 58.885 34.615 8.96 0.00 40.91 2.40
3130 3491 6.475504 TCAGCCTTCATGAATACAAAGAAGA 58.524 36.000 8.96 0.00 40.91 2.87
3161 3525 9.901172 AAGACGGGAGATAAAATTTAAGTACAT 57.099 29.630 0.00 0.00 0.00 2.29
3162 3526 9.374838 GAAGACGGGAGATAAAATTTAAGTACA 57.625 33.333 0.00 0.00 0.00 2.90
3163 3527 9.374838 TGAAGACGGGAGATAAAATTTAAGTAC 57.625 33.333 0.00 0.00 0.00 2.73
3164 3528 9.947433 TTGAAGACGGGAGATAAAATTTAAGTA 57.053 29.630 0.00 0.00 0.00 2.24
3165 3529 8.727910 GTTGAAGACGGGAGATAAAATTTAAGT 58.272 33.333 0.00 0.00 0.00 2.24
3166 3530 8.726988 TGTTGAAGACGGGAGATAAAATTTAAG 58.273 33.333 0.00 0.00 0.00 1.85
3167 3531 8.624367 TGTTGAAGACGGGAGATAAAATTTAA 57.376 30.769 0.00 0.00 0.00 1.52
3168 3532 8.624367 TTGTTGAAGACGGGAGATAAAATTTA 57.376 30.769 0.00 0.00 0.00 1.40
3169 3533 7.519032 TTGTTGAAGACGGGAGATAAAATTT 57.481 32.000 0.00 0.00 0.00 1.82
3170 3534 7.447238 TCTTTGTTGAAGACGGGAGATAAAATT 59.553 33.333 0.00 0.00 39.44 1.82
3171 3535 6.940298 TCTTTGTTGAAGACGGGAGATAAAAT 59.060 34.615 0.00 0.00 39.44 1.82
3172 3536 6.292923 TCTTTGTTGAAGACGGGAGATAAAA 58.707 36.000 0.00 0.00 39.44 1.52
3173 3537 5.860611 TCTTTGTTGAAGACGGGAGATAAA 58.139 37.500 0.00 0.00 39.44 1.40
3174 3538 5.477607 TCTTTGTTGAAGACGGGAGATAA 57.522 39.130 0.00 0.00 39.44 1.75
3175 3539 5.186992 TGATCTTTGTTGAAGACGGGAGATA 59.813 40.000 0.00 0.00 46.66 1.98
3176 3540 4.020218 TGATCTTTGTTGAAGACGGGAGAT 60.020 41.667 0.00 0.00 46.66 2.75
3177 3541 3.323691 TGATCTTTGTTGAAGACGGGAGA 59.676 43.478 0.00 0.00 46.66 3.71
3178 3542 3.664107 TGATCTTTGTTGAAGACGGGAG 58.336 45.455 0.00 0.00 46.66 4.30
3179 3543 3.762407 TGATCTTTGTTGAAGACGGGA 57.238 42.857 0.00 0.00 46.66 5.14
3180 3544 4.256920 AGATGATCTTTGTTGAAGACGGG 58.743 43.478 0.00 0.00 46.66 5.28
3181 3545 4.331168 GGAGATGATCTTTGTTGAAGACGG 59.669 45.833 0.00 0.00 46.66 4.79
3182 3546 5.174395 AGGAGATGATCTTTGTTGAAGACG 58.826 41.667 0.00 0.00 46.66 4.18
3183 3547 6.840075 CAAGGAGATGATCTTTGTTGAAGAC 58.160 40.000 0.00 0.00 46.66 3.01
3192 3556 6.432472 GGTCTTGAAACAAGGAGATGATCTTT 59.568 38.462 10.84 0.00 0.00 2.52
3193 3557 5.942826 GGTCTTGAAACAAGGAGATGATCTT 59.057 40.000 10.84 0.00 0.00 2.40
3194 3558 5.495640 GGTCTTGAAACAAGGAGATGATCT 58.504 41.667 10.84 0.00 0.00 2.75
3195 3559 4.331168 CGGTCTTGAAACAAGGAGATGATC 59.669 45.833 10.84 0.00 0.00 2.92
3196 3560 4.256920 CGGTCTTGAAACAAGGAGATGAT 58.743 43.478 10.84 0.00 0.00 2.45
3197 3561 3.071023 ACGGTCTTGAAACAAGGAGATGA 59.929 43.478 10.84 0.00 0.00 2.92
3198 3562 3.403038 ACGGTCTTGAAACAAGGAGATG 58.597 45.455 10.84 1.82 0.00 2.90
3199 3563 3.557264 GGACGGTCTTGAAACAAGGAGAT 60.557 47.826 8.23 0.00 0.00 2.75
3200 3564 2.224209 GGACGGTCTTGAAACAAGGAGA 60.224 50.000 8.23 0.00 0.00 3.71
3201 3565 2.143925 GGACGGTCTTGAAACAAGGAG 58.856 52.381 8.23 6.12 0.00 3.69
3202 3566 1.766496 AGGACGGTCTTGAAACAAGGA 59.234 47.619 8.23 0.00 0.00 3.36
3203 3567 1.873591 CAGGACGGTCTTGAAACAAGG 59.126 52.381 14.44 0.00 0.00 3.61
3204 3568 1.264288 GCAGGACGGTCTTGAAACAAG 59.736 52.381 22.61 5.29 0.00 3.16
3205 3569 1.305201 GCAGGACGGTCTTGAAACAA 58.695 50.000 22.61 0.00 0.00 2.83
3206 3570 0.534203 GGCAGGACGGTCTTGAAACA 60.534 55.000 22.61 0.00 0.00 2.83
3207 3571 1.235281 GGGCAGGACGGTCTTGAAAC 61.235 60.000 22.61 11.73 0.00 2.78
3208 3572 1.072505 GGGCAGGACGGTCTTGAAA 59.927 57.895 22.61 0.00 0.00 2.69
3209 3573 2.144078 TGGGCAGGACGGTCTTGAA 61.144 57.895 22.61 5.67 0.00 2.69
3210 3574 2.525629 TGGGCAGGACGGTCTTGA 60.526 61.111 22.61 0.39 0.00 3.02
3211 3575 2.358737 GTGGGCAGGACGGTCTTG 60.359 66.667 15.19 15.19 0.00 3.02
3212 3576 2.847234 TGTGGGCAGGACGGTCTT 60.847 61.111 8.23 0.00 0.00 3.01
3213 3577 3.626924 GTGTGGGCAGGACGGTCT 61.627 66.667 8.23 0.00 0.00 3.85
3214 3578 3.883744 CTGTGTGGGCAGGACGGTC 62.884 68.421 0.00 0.00 33.11 4.79
3215 3579 3.941188 CTGTGTGGGCAGGACGGT 61.941 66.667 0.00 0.00 33.11 4.83
3218 3582 4.269523 TGGCTGTGTGGGCAGGAC 62.270 66.667 0.00 0.00 36.85 3.85
3222 3586 3.480679 CTGTCTGGCTGTGTGGGCA 62.481 63.158 0.00 0.00 39.84 5.36
3223 3587 2.670934 CTGTCTGGCTGTGTGGGC 60.671 66.667 0.00 0.00 0.00 5.36
3224 3588 2.033141 CCTGTCTGGCTGTGTGGG 59.967 66.667 0.00 0.00 0.00 4.61
3233 3597 2.457366 AAAGTACTTCGCCTGTCTGG 57.543 50.000 8.95 0.00 39.35 3.86
3234 3598 3.654414 AGAAAAGTACTTCGCCTGTCTG 58.346 45.455 8.95 0.00 0.00 3.51
3235 3599 3.321111 TGAGAAAAGTACTTCGCCTGTCT 59.679 43.478 8.95 5.28 0.00 3.41
3236 3600 3.429207 GTGAGAAAAGTACTTCGCCTGTC 59.571 47.826 8.95 3.34 0.00 3.51
3237 3601 3.391049 GTGAGAAAAGTACTTCGCCTGT 58.609 45.455 8.95 0.00 0.00 4.00
3238 3602 2.408704 CGTGAGAAAAGTACTTCGCCTG 59.591 50.000 8.95 0.00 0.00 4.85
3239 3603 2.035576 ACGTGAGAAAAGTACTTCGCCT 59.964 45.455 8.95 6.34 0.00 5.52
3240 3604 2.401351 ACGTGAGAAAAGTACTTCGCC 58.599 47.619 8.95 1.35 0.00 5.54
3241 3605 4.448363 AAACGTGAGAAAAGTACTTCGC 57.552 40.909 8.95 4.11 0.00 4.70
3242 3606 5.459762 TGGTAAACGTGAGAAAAGTACTTCG 59.540 40.000 8.95 9.43 0.00 3.79
3243 3607 6.833342 TGGTAAACGTGAGAAAAGTACTTC 57.167 37.500 8.95 0.00 0.00 3.01
3244 3608 7.797038 ATTGGTAAACGTGAGAAAAGTACTT 57.203 32.000 1.12 1.12 0.00 2.24
3245 3609 7.797038 AATTGGTAAACGTGAGAAAAGTACT 57.203 32.000 0.00 0.00 0.00 2.73
3246 3610 9.373750 GTTAATTGGTAAACGTGAGAAAAGTAC 57.626 33.333 0.00 0.00 0.00 2.73
3247 3611 9.328845 AGTTAATTGGTAAACGTGAGAAAAGTA 57.671 29.630 0.00 0.00 0.00 2.24
3248 3612 8.217131 AGTTAATTGGTAAACGTGAGAAAAGT 57.783 30.769 0.00 0.00 0.00 2.66
3249 3613 9.166126 GAAGTTAATTGGTAAACGTGAGAAAAG 57.834 33.333 0.00 0.00 0.00 2.27
3250 3614 7.851963 CGAAGTTAATTGGTAAACGTGAGAAAA 59.148 33.333 0.00 0.00 0.00 2.29
3251 3615 7.346695 CGAAGTTAATTGGTAAACGTGAGAAA 58.653 34.615 0.00 0.00 0.00 2.52
3252 3616 6.564499 GCGAAGTTAATTGGTAAACGTGAGAA 60.564 38.462 0.00 0.00 0.00 2.87
3253 3617 5.107375 GCGAAGTTAATTGGTAAACGTGAGA 60.107 40.000 0.00 0.00 0.00 3.27
3254 3618 5.077424 GCGAAGTTAATTGGTAAACGTGAG 58.923 41.667 0.00 0.00 0.00 3.51
3255 3619 4.083908 GGCGAAGTTAATTGGTAAACGTGA 60.084 41.667 0.00 0.00 0.00 4.35
3256 3620 4.153256 GGCGAAGTTAATTGGTAAACGTG 58.847 43.478 0.00 0.00 0.00 4.49
3257 3621 3.120580 CGGCGAAGTTAATTGGTAAACGT 60.121 43.478 0.00 0.00 0.00 3.99
3258 3622 3.409949 CGGCGAAGTTAATTGGTAAACG 58.590 45.455 0.00 0.00 0.00 3.60
3259 3623 3.436359 TCCGGCGAAGTTAATTGGTAAAC 59.564 43.478 9.30 0.00 0.00 2.01
3260 3624 3.672808 TCCGGCGAAGTTAATTGGTAAA 58.327 40.909 9.30 0.00 0.00 2.01
3261 3625 3.264104 CTCCGGCGAAGTTAATTGGTAA 58.736 45.455 9.30 0.00 0.00 2.85
3262 3626 2.419021 CCTCCGGCGAAGTTAATTGGTA 60.419 50.000 9.30 0.00 0.00 3.25
3263 3627 1.677820 CCTCCGGCGAAGTTAATTGGT 60.678 52.381 9.30 0.00 0.00 3.67
3264 3628 1.014352 CCTCCGGCGAAGTTAATTGG 58.986 55.000 9.30 0.00 0.00 3.16
3265 3629 1.014352 CCCTCCGGCGAAGTTAATTG 58.986 55.000 9.30 0.00 0.00 2.32
3266 3630 0.906775 TCCCTCCGGCGAAGTTAATT 59.093 50.000 9.30 0.00 0.00 1.40
3267 3631 0.906775 TTCCCTCCGGCGAAGTTAAT 59.093 50.000 9.30 0.00 0.00 1.40
3268 3632 0.248289 CTTCCCTCCGGCGAAGTTAA 59.752 55.000 9.30 0.00 32.51 2.01
3269 3633 1.610554 CCTTCCCTCCGGCGAAGTTA 61.611 60.000 9.30 0.00 34.85 2.24
3270 3634 2.663196 CTTCCCTCCGGCGAAGTT 59.337 61.111 9.30 0.00 32.51 2.66
3271 3635 3.391382 CCTTCCCTCCGGCGAAGT 61.391 66.667 9.30 0.00 34.85 3.01
3272 3636 3.075005 TCCTTCCCTCCGGCGAAG 61.075 66.667 9.30 15.15 36.13 3.79
3273 3637 3.387947 GTCCTTCCCTCCGGCGAA 61.388 66.667 9.30 0.00 0.00 4.70
3276 3640 3.090532 ATGGTCCTTCCCTCCGGC 61.091 66.667 0.00 0.00 34.77 6.13
3277 3641 0.105658 TAGATGGTCCTTCCCTCCGG 60.106 60.000 0.00 0.00 32.34 5.14
3278 3642 1.896465 GATAGATGGTCCTTCCCTCCG 59.104 57.143 1.13 0.00 32.34 4.63
3279 3643 3.268034 AGATAGATGGTCCTTCCCTCC 57.732 52.381 1.13 0.00 32.34 4.30
3280 3644 4.775253 CCTAAGATAGATGGTCCTTCCCTC 59.225 50.000 1.13 0.00 34.77 4.30
3281 3645 4.451460 CCCTAAGATAGATGGTCCTTCCCT 60.451 50.000 1.13 0.00 34.77 4.20
3282 3646 3.841255 CCCTAAGATAGATGGTCCTTCCC 59.159 52.174 1.13 0.00 34.77 3.97
3283 3647 4.494591 ACCCTAAGATAGATGGTCCTTCC 58.505 47.826 1.13 0.00 0.00 3.46
3284 3648 5.221742 CCAACCCTAAGATAGATGGTCCTTC 60.222 48.000 0.00 0.00 0.00 3.46
3285 3649 4.660771 CCAACCCTAAGATAGATGGTCCTT 59.339 45.833 0.00 0.00 0.00 3.36
3286 3650 4.235372 CCAACCCTAAGATAGATGGTCCT 58.765 47.826 0.00 0.00 0.00 3.85
3287 3651 3.328050 CCCAACCCTAAGATAGATGGTCC 59.672 52.174 0.00 0.00 0.00 4.46
3288 3652 3.328050 CCCCAACCCTAAGATAGATGGTC 59.672 52.174 0.00 0.00 0.00 4.02
3289 3653 3.050564 TCCCCAACCCTAAGATAGATGGT 60.051 47.826 0.00 0.00 0.00 3.55
3290 3654 3.584848 CTCCCCAACCCTAAGATAGATGG 59.415 52.174 0.00 0.00 0.00 3.51
3291 3655 3.584848 CCTCCCCAACCCTAAGATAGATG 59.415 52.174 0.00 0.00 0.00 2.90
3292 3656 3.475174 TCCTCCCCAACCCTAAGATAGAT 59.525 47.826 0.00 0.00 0.00 1.98
3293 3657 2.869689 TCCTCCCCAACCCTAAGATAGA 59.130 50.000 0.00 0.00 0.00 1.98
3294 3658 3.346146 TCCTCCCCAACCCTAAGATAG 57.654 52.381 0.00 0.00 0.00 2.08
3295 3659 3.276578 TCTTCCTCCCCAACCCTAAGATA 59.723 47.826 0.00 0.00 0.00 1.98
3296 3660 2.047296 TCTTCCTCCCCAACCCTAAGAT 59.953 50.000 0.00 0.00 0.00 2.40
3297 3661 1.439543 TCTTCCTCCCCAACCCTAAGA 59.560 52.381 0.00 0.00 0.00 2.10
3298 3662 1.966845 TCTTCCTCCCCAACCCTAAG 58.033 55.000 0.00 0.00 0.00 2.18
3299 3663 1.990327 GTTCTTCCTCCCCAACCCTAA 59.010 52.381 0.00 0.00 0.00 2.69
3300 3664 1.665137 GTTCTTCCTCCCCAACCCTA 58.335 55.000 0.00 0.00 0.00 3.53
3301 3665 1.489560 CGTTCTTCCTCCCCAACCCT 61.490 60.000 0.00 0.00 0.00 4.34
3302 3666 1.002502 CGTTCTTCCTCCCCAACCC 60.003 63.158 0.00 0.00 0.00 4.11
3303 3667 1.002502 CCGTTCTTCCTCCCCAACC 60.003 63.158 0.00 0.00 0.00 3.77
3304 3668 1.674651 GCCGTTCTTCCTCCCCAAC 60.675 63.158 0.00 0.00 0.00 3.77
3305 3669 2.754375 GCCGTTCTTCCTCCCCAA 59.246 61.111 0.00 0.00 0.00 4.12
3306 3670 3.702048 CGCCGTTCTTCCTCCCCA 61.702 66.667 0.00 0.00 0.00 4.96
3307 3671 4.468689 CCGCCGTTCTTCCTCCCC 62.469 72.222 0.00 0.00 0.00 4.81
3322 3686 4.025401 GAACTTGCACCACCGCCG 62.025 66.667 0.00 0.00 0.00 6.46
3323 3687 4.025401 CGAACTTGCACCACCGCC 62.025 66.667 0.00 0.00 0.00 6.13
3324 3688 4.683334 GCGAACTTGCACCACCGC 62.683 66.667 6.91 6.91 35.91 5.68
3325 3689 4.025401 GGCGAACTTGCACCACCG 62.025 66.667 0.00 0.00 36.28 4.94
3326 3690 4.025401 CGGCGAACTTGCACCACC 62.025 66.667 0.00 0.00 36.28 4.61
3327 3691 4.025401 CCGGCGAACTTGCACCAC 62.025 66.667 9.30 0.00 36.28 4.16
3328 3692 4.243008 TCCGGCGAACTTGCACCA 62.243 61.111 9.30 0.00 36.28 4.17
3329 3693 3.423154 CTCCGGCGAACTTGCACC 61.423 66.667 9.30 0.00 36.28 5.01
3330 3694 1.503818 TTTCTCCGGCGAACTTGCAC 61.504 55.000 9.30 0.00 36.28 4.57
3331 3695 0.816018 TTTTCTCCGGCGAACTTGCA 60.816 50.000 9.30 0.00 36.28 4.08
3332 3696 0.521735 ATTTTCTCCGGCGAACTTGC 59.478 50.000 9.30 0.00 0.00 4.01
3333 3697 2.076863 AGATTTTCTCCGGCGAACTTG 58.923 47.619 9.30 0.00 0.00 3.16
3334 3698 2.347731 GAGATTTTCTCCGGCGAACTT 58.652 47.619 9.30 0.00 37.55 2.66
3335 3699 2.011540 GAGATTTTCTCCGGCGAACT 57.988 50.000 9.30 0.52 37.55 3.01
3344 3708 1.943340 GGCACGGATGGAGATTTTCTC 59.057 52.381 0.00 0.00 42.66 2.87
3345 3709 2.044123 GGCACGGATGGAGATTTTCT 57.956 50.000 0.00 0.00 0.00 2.52
3786 4150 2.690497 TCTCCTAGATTGCTTCTCCGTG 59.310 50.000 0.00 0.00 35.79 4.94
3787 4151 3.019799 TCTCCTAGATTGCTTCTCCGT 57.980 47.619 0.00 0.00 35.79 4.69
3788 4152 4.599047 AATCTCCTAGATTGCTTCTCCG 57.401 45.455 1.44 0.00 42.90 4.63
3797 4161 9.835389 CAGATTTCTTCTTCAATCTCCTAGATT 57.165 33.333 0.00 0.00 37.78 2.40
3798 4162 8.991275 ACAGATTTCTTCTTCAATCTCCTAGAT 58.009 33.333 0.00 0.00 37.60 1.98
3799 4163 8.256605 CACAGATTTCTTCTTCAATCTCCTAGA 58.743 37.037 0.00 0.00 37.60 2.43
3800 4164 7.011295 GCACAGATTTCTTCTTCAATCTCCTAG 59.989 40.741 0.00 0.00 37.60 3.02
3801 4165 6.820656 GCACAGATTTCTTCTTCAATCTCCTA 59.179 38.462 0.00 0.00 37.60 2.94
3802 4166 5.647225 GCACAGATTTCTTCTTCAATCTCCT 59.353 40.000 0.00 0.00 37.60 3.69
3803 4167 5.163673 GGCACAGATTTCTTCTTCAATCTCC 60.164 44.000 0.00 0.00 37.60 3.71
3804 4168 5.447010 CGGCACAGATTTCTTCTTCAATCTC 60.447 44.000 0.00 0.00 37.60 2.75
3805 4169 4.394300 CGGCACAGATTTCTTCTTCAATCT 59.606 41.667 0.00 0.00 39.83 2.40
3806 4170 4.154918 ACGGCACAGATTTCTTCTTCAATC 59.845 41.667 0.00 0.00 29.93 2.67
3807 4171 4.074970 ACGGCACAGATTTCTTCTTCAAT 58.925 39.130 0.00 0.00 29.93 2.57
3808 4172 3.476552 ACGGCACAGATTTCTTCTTCAA 58.523 40.909 0.00 0.00 29.93 2.69
3809 4173 3.126001 ACGGCACAGATTTCTTCTTCA 57.874 42.857 0.00 0.00 29.93 3.02
3810 4174 3.498397 TGAACGGCACAGATTTCTTCTTC 59.502 43.478 0.00 0.00 29.93 2.87
3811 4175 3.476552 TGAACGGCACAGATTTCTTCTT 58.523 40.909 0.00 0.00 29.93 2.52
3812 4176 3.126001 TGAACGGCACAGATTTCTTCT 57.874 42.857 0.00 0.00 33.90 2.85
3813 4177 4.425577 AATGAACGGCACAGATTTCTTC 57.574 40.909 0.00 0.00 0.00 2.87
3814 4178 4.613622 CGAAATGAACGGCACAGATTTCTT 60.614 41.667 0.00 0.00 0.00 2.52
3815 4179 3.120199 CGAAATGAACGGCACAGATTTCT 60.120 43.478 0.00 0.00 0.00 2.52
3816 4180 3.163594 CGAAATGAACGGCACAGATTTC 58.836 45.455 0.00 0.00 0.00 2.17
3817 4181 2.668279 GCGAAATGAACGGCACAGATTT 60.668 45.455 0.00 0.00 0.00 2.17
3818 4182 1.135689 GCGAAATGAACGGCACAGATT 60.136 47.619 0.00 0.00 0.00 2.40
3819 4183 0.447801 GCGAAATGAACGGCACAGAT 59.552 50.000 0.00 0.00 0.00 2.90
3820 4184 0.882484 TGCGAAATGAACGGCACAGA 60.882 50.000 0.00 0.00 0.00 3.41
3821 4185 0.168788 ATGCGAAATGAACGGCACAG 59.831 50.000 0.00 0.00 0.00 3.66
3822 4186 0.167908 GATGCGAAATGAACGGCACA 59.832 50.000 0.00 0.00 0.00 4.57
3823 4187 0.523335 GGATGCGAAATGAACGGCAC 60.523 55.000 0.00 0.00 0.00 5.01
3824 4188 0.957888 TGGATGCGAAATGAACGGCA 60.958 50.000 0.00 0.00 0.00 5.69
3825 4189 0.170116 TTGGATGCGAAATGAACGGC 59.830 50.000 0.00 0.00 0.00 5.68
3826 4190 2.453080 CATTGGATGCGAAATGAACGG 58.547 47.619 0.00 0.00 36.13 4.44
3827 4191 2.453080 CCATTGGATGCGAAATGAACG 58.547 47.619 0.00 0.00 36.13 3.95
3828 4192 2.159198 AGCCATTGGATGCGAAATGAAC 60.159 45.455 6.95 0.00 36.13 3.18
3829 4193 2.101783 AGCCATTGGATGCGAAATGAA 58.898 42.857 6.95 0.00 36.13 2.57
3830 4194 1.406180 CAGCCATTGGATGCGAAATGA 59.594 47.619 8.21 0.00 36.13 2.57
3831 4195 1.406180 TCAGCCATTGGATGCGAAATG 59.594 47.619 16.17 0.00 39.19 2.32
3832 4196 1.679680 CTCAGCCATTGGATGCGAAAT 59.320 47.619 16.17 0.00 39.19 2.17
3833 4197 1.097232 CTCAGCCATTGGATGCGAAA 58.903 50.000 16.17 0.00 39.19 3.46
3834 4198 0.252761 TCTCAGCCATTGGATGCGAA 59.747 50.000 16.17 1.14 39.19 4.70
3835 4199 0.252761 TTCTCAGCCATTGGATGCGA 59.747 50.000 16.17 12.76 39.19 5.10
3836 4200 1.097232 TTTCTCAGCCATTGGATGCG 58.903 50.000 16.17 10.39 39.19 4.73
3837 4201 3.714391 GATTTTCTCAGCCATTGGATGC 58.286 45.455 16.17 0.00 39.19 3.91
3838 4202 3.628942 TCGATTTTCTCAGCCATTGGATG 59.371 43.478 14.87 14.87 40.92 3.51
3839 4203 3.629398 GTCGATTTTCTCAGCCATTGGAT 59.371 43.478 6.95 0.00 0.00 3.41
3840 4204 3.009723 GTCGATTTTCTCAGCCATTGGA 58.990 45.455 6.95 0.00 0.00 3.53
3841 4205 2.223112 CGTCGATTTTCTCAGCCATTGG 60.223 50.000 0.00 0.00 0.00 3.16
3842 4206 2.223112 CCGTCGATTTTCTCAGCCATTG 60.223 50.000 0.00 0.00 0.00 2.82
3843 4207 2.009774 CCGTCGATTTTCTCAGCCATT 58.990 47.619 0.00 0.00 0.00 3.16
3844 4208 1.207089 TCCGTCGATTTTCTCAGCCAT 59.793 47.619 0.00 0.00 0.00 4.40
3845 4209 0.606096 TCCGTCGATTTTCTCAGCCA 59.394 50.000 0.00 0.00 0.00 4.75
3846 4210 1.000145 GTCCGTCGATTTTCTCAGCC 59.000 55.000 0.00 0.00 0.00 4.85
3847 4211 1.000145 GGTCCGTCGATTTTCTCAGC 59.000 55.000 0.00 0.00 0.00 4.26
3848 4212 1.204941 AGGGTCCGTCGATTTTCTCAG 59.795 52.381 0.00 0.00 0.00 3.35
3849 4213 1.263356 AGGGTCCGTCGATTTTCTCA 58.737 50.000 0.00 0.00 0.00 3.27
3850 4214 3.515330 TTAGGGTCCGTCGATTTTCTC 57.485 47.619 0.00 0.00 0.00 2.87
3851 4215 4.482952 AATTAGGGTCCGTCGATTTTCT 57.517 40.909 0.00 0.00 0.00 2.52
3852 4216 4.393990 ACAAATTAGGGTCCGTCGATTTTC 59.606 41.667 0.00 0.00 0.00 2.29
3853 4217 4.329392 ACAAATTAGGGTCCGTCGATTTT 58.671 39.130 0.00 0.00 0.00 1.82
3854 4218 3.946606 ACAAATTAGGGTCCGTCGATTT 58.053 40.909 0.00 0.00 0.00 2.17
3855 4219 3.622166 ACAAATTAGGGTCCGTCGATT 57.378 42.857 0.00 0.00 0.00 3.34
3856 4220 3.622166 AACAAATTAGGGTCCGTCGAT 57.378 42.857 0.00 0.00 0.00 3.59
3857 4221 3.405823 AAACAAATTAGGGTCCGTCGA 57.594 42.857 0.00 0.00 0.00 4.20
3858 4222 4.492791 AAAAACAAATTAGGGTCCGTCG 57.507 40.909 0.00 0.00 0.00 5.12
3876 4240 5.245075 AGGAACAAGGTTGTCAGTTGAAAAA 59.755 36.000 0.00 0.00 41.31 1.94
3877 4241 4.770010 AGGAACAAGGTTGTCAGTTGAAAA 59.230 37.500 0.00 0.00 41.31 2.29
3878 4242 4.340617 AGGAACAAGGTTGTCAGTTGAAA 58.659 39.130 0.00 0.00 41.31 2.69
3879 4243 3.963129 AGGAACAAGGTTGTCAGTTGAA 58.037 40.909 0.00 0.00 41.31 2.69
3880 4244 3.644966 AGGAACAAGGTTGTCAGTTGA 57.355 42.857 0.00 0.00 41.31 3.18
3881 4245 4.672409 GAAAGGAACAAGGTTGTCAGTTG 58.328 43.478 0.00 0.00 41.31 3.16
3882 4246 3.377172 CGAAAGGAACAAGGTTGTCAGTT 59.623 43.478 0.00 0.00 41.31 3.16
3883 4247 2.943033 CGAAAGGAACAAGGTTGTCAGT 59.057 45.455 0.00 0.00 41.31 3.41
3884 4248 2.943033 ACGAAAGGAACAAGGTTGTCAG 59.057 45.455 0.00 0.00 41.31 3.51
3885 4249 2.680841 CACGAAAGGAACAAGGTTGTCA 59.319 45.455 0.00 0.00 41.31 3.58
3886 4250 2.681344 ACACGAAAGGAACAAGGTTGTC 59.319 45.455 0.00 0.00 41.31 3.18
3887 4251 2.681344 GACACGAAAGGAACAAGGTTGT 59.319 45.455 0.00 0.00 44.72 3.32
3888 4252 2.680841 TGACACGAAAGGAACAAGGTTG 59.319 45.455 0.00 0.00 0.00 3.77
3889 4253 2.943033 CTGACACGAAAGGAACAAGGTT 59.057 45.455 0.00 0.00 0.00 3.50
3890 4254 2.561569 CTGACACGAAAGGAACAAGGT 58.438 47.619 0.00 0.00 0.00 3.50
3891 4255 1.264288 GCTGACACGAAAGGAACAAGG 59.736 52.381 0.00 0.00 0.00 3.61
3892 4256 1.070577 CGCTGACACGAAAGGAACAAG 60.071 52.381 0.00 0.00 34.06 3.16
3893 4257 0.934496 CGCTGACACGAAAGGAACAA 59.066 50.000 0.00 0.00 34.06 2.83
3894 4258 0.103390 TCGCTGACACGAAAGGAACA 59.897 50.000 0.00 0.00 39.54 3.18
3895 4259 0.507358 GTCGCTGACACGAAAGGAAC 59.493 55.000 0.00 0.00 44.93 3.62
3896 4260 0.599204 GGTCGCTGACACGAAAGGAA 60.599 55.000 10.14 0.00 44.93 3.36
3897 4261 1.006571 GGTCGCTGACACGAAAGGA 60.007 57.895 10.14 0.00 44.93 3.36
3898 4262 0.670546 ATGGTCGCTGACACGAAAGG 60.671 55.000 10.14 0.00 44.93 3.11
3899 4263 1.990799 TATGGTCGCTGACACGAAAG 58.009 50.000 10.14 0.00 44.93 2.62
3900 4264 2.267426 CATATGGTCGCTGACACGAAA 58.733 47.619 10.14 0.00 44.93 3.46
3901 4265 1.921243 CATATGGTCGCTGACACGAA 58.079 50.000 10.14 0.00 44.93 3.85
3902 4266 0.527600 GCATATGGTCGCTGACACGA 60.528 55.000 4.56 0.00 40.36 4.35
3903 4267 0.805711 TGCATATGGTCGCTGACACG 60.806 55.000 4.56 0.00 33.68 4.49
3904 4268 1.262417 CATGCATATGGTCGCTGACAC 59.738 52.381 0.00 2.13 33.68 3.67
3905 4269 1.134431 ACATGCATATGGTCGCTGACA 60.134 47.619 0.00 0.00 38.66 3.58
3906 4270 1.262417 CACATGCATATGGTCGCTGAC 59.738 52.381 0.00 0.79 38.66 3.51
3907 4271 1.585297 CACATGCATATGGTCGCTGA 58.415 50.000 0.00 0.00 38.66 4.26
3908 4272 0.040692 GCACATGCATATGGTCGCTG 60.041 55.000 7.16 0.00 41.59 5.18
3909 4273 2.324215 GCACATGCATATGGTCGCT 58.676 52.632 7.16 0.00 41.59 4.93
3910 4274 4.929198 GCACATGCATATGGTCGC 57.071 55.556 7.16 1.46 41.59 5.19
3922 4286 4.824537 TGTAACATGTACAAGGTTGCACAT 59.175 37.500 21.84 3.16 43.91 3.21
3923 4287 4.200092 TGTAACATGTACAAGGTTGCACA 58.800 39.130 21.84 16.87 38.67 4.57
3924 4288 4.822036 TGTAACATGTACAAGGTTGCAC 57.178 40.909 21.84 15.18 33.29 4.57
3925 4289 5.590663 TCTTTGTAACATGTACAAGGTTGCA 59.409 36.000 21.84 21.84 38.47 4.08
3926 4290 6.067263 TCTTTGTAACATGTACAAGGTTGC 57.933 37.500 20.42 19.41 38.47 4.17
3927 4291 6.582295 GCATCTTTGTAACATGTACAAGGTTG 59.418 38.462 20.42 21.13 38.47 3.77
3928 4292 6.264292 TGCATCTTTGTAACATGTACAAGGTT 59.736 34.615 19.63 17.16 38.47 3.50
3929 4293 5.767665 TGCATCTTTGTAACATGTACAAGGT 59.232 36.000 19.63 0.00 38.47 3.50
3930 4294 6.252967 TGCATCTTTGTAACATGTACAAGG 57.747 37.500 16.82 16.82 38.47 3.61
3931 4295 7.307694 ACATGCATCTTTGTAACATGTACAAG 58.692 34.615 15.60 0.00 46.95 3.16
3932 4296 7.213216 ACATGCATCTTTGTAACATGTACAA 57.787 32.000 0.00 7.71 46.95 2.41
3933 4297 6.816134 ACATGCATCTTTGTAACATGTACA 57.184 33.333 0.00 0.00 46.95 2.90
3937 4301 6.806120 CATCACATGCATCTTTGTAACATG 57.194 37.500 0.00 0.00 42.92 3.21
3952 4316 5.827666 TGCAAGATTCTTATGCATCACATG 58.172 37.500 0.19 0.00 44.52 3.21
3969 4333 9.791820 CAAGATTGTTGAATATTGTATGCAAGA 57.208 29.630 1.90 0.00 36.45 3.02
3978 4342 8.291740 TGACACAGACAAGATTGTTGAATATTG 58.708 33.333 0.00 0.00 43.52 1.90
3979 4343 8.394971 TGACACAGACAAGATTGTTGAATATT 57.605 30.769 0.00 0.00 42.43 1.28
3980 4344 7.663081 ACTGACACAGACAAGATTGTTGAATAT 59.337 33.333 5.76 0.00 42.43 1.28
3981 4345 6.992123 ACTGACACAGACAAGATTGTTGAATA 59.008 34.615 5.76 0.00 42.43 1.75
3982 4346 5.824624 ACTGACACAGACAAGATTGTTGAAT 59.175 36.000 5.76 0.00 42.43 2.57
3983 4347 5.065090 CACTGACACAGACAAGATTGTTGAA 59.935 40.000 5.76 0.00 42.43 2.69
3984 4348 4.571984 CACTGACACAGACAAGATTGTTGA 59.428 41.667 5.76 0.00 42.43 3.18
3985 4349 4.787563 GCACTGACACAGACAAGATTGTTG 60.788 45.833 5.76 3.61 42.43 3.33
3986 4350 3.313526 GCACTGACACAGACAAGATTGTT 59.686 43.478 5.76 0.00 42.43 2.83
3987 4351 2.874701 GCACTGACACAGACAAGATTGT 59.125 45.455 5.76 0.00 45.65 2.71
3988 4352 2.225019 GGCACTGACACAGACAAGATTG 59.775 50.000 5.76 0.00 35.18 2.67
3989 4353 2.158769 TGGCACTGACACAGACAAGATT 60.159 45.455 5.76 0.00 35.18 2.40
3990 4354 1.417517 TGGCACTGACACAGACAAGAT 59.582 47.619 5.76 0.00 35.18 2.40
3991 4355 0.829990 TGGCACTGACACAGACAAGA 59.170 50.000 5.76 0.00 35.18 3.02
3992 4356 1.600957 CTTGGCACTGACACAGACAAG 59.399 52.381 5.76 11.55 36.21 3.16
3993 4357 1.065491 ACTTGGCACTGACACAGACAA 60.065 47.619 5.76 6.86 35.18 3.18
3994 4358 0.541392 ACTTGGCACTGACACAGACA 59.459 50.000 5.76 0.00 35.18 3.41
3995 4359 0.940126 CACTTGGCACTGACACAGAC 59.060 55.000 5.76 0.00 35.18 3.51
3996 4360 0.541392 ACACTTGGCACTGACACAGA 59.459 50.000 5.76 0.00 35.18 3.41
3997 4361 0.659427 CACACTTGGCACTGACACAG 59.341 55.000 0.00 0.00 37.52 3.66
3998 4362 0.747644 CCACACTTGGCACTGACACA 60.748 55.000 0.00 0.00 35.56 3.72
3999 4363 1.447317 CCCACACTTGGCACTGACAC 61.447 60.000 0.00 0.00 42.35 3.67
4000 4364 1.152984 CCCACACTTGGCACTGACA 60.153 57.895 0.00 0.00 42.35 3.58
4001 4365 0.107831 TACCCACACTTGGCACTGAC 59.892 55.000 0.00 0.00 42.35 3.51
4002 4366 1.064003 ATACCCACACTTGGCACTGA 58.936 50.000 0.00 0.00 42.35 3.41
4003 4367 1.167851 CATACCCACACTTGGCACTG 58.832 55.000 0.00 0.00 42.35 3.66
4004 4368 0.609131 GCATACCCACACTTGGCACT 60.609 55.000 0.00 0.00 42.35 4.40
4005 4369 0.893270 TGCATACCCACACTTGGCAC 60.893 55.000 0.00 0.00 42.35 5.01
4006 4370 0.039472 ATGCATACCCACACTTGGCA 59.961 50.000 0.00 0.00 42.35 4.92
4007 4371 0.740737 GATGCATACCCACACTTGGC 59.259 55.000 0.00 0.00 42.35 4.52
4008 4372 2.127271 TGATGCATACCCACACTTGG 57.873 50.000 0.00 0.00 43.50 3.61
4009 4373 3.444742 ACATTGATGCATACCCACACTTG 59.555 43.478 0.00 0.00 0.00 3.16
4010 4374 3.700538 ACATTGATGCATACCCACACTT 58.299 40.909 0.00 0.00 0.00 3.16
4011 4375 3.370840 ACATTGATGCATACCCACACT 57.629 42.857 0.00 0.00 0.00 3.55
4012 4376 8.737168 ATATATACATTGATGCATACCCACAC 57.263 34.615 0.00 0.00 0.00 3.82
4033 4397 8.512956 GCTCGTTTACTCTCACTGGATAATATA 58.487 37.037 0.00 0.00 0.00 0.86
4034 4398 7.231722 AGCTCGTTTACTCTCACTGGATAATAT 59.768 37.037 0.00 0.00 0.00 1.28
4035 4399 6.546403 AGCTCGTTTACTCTCACTGGATAATA 59.454 38.462 0.00 0.00 0.00 0.98
4036 4400 5.361285 AGCTCGTTTACTCTCACTGGATAAT 59.639 40.000 0.00 0.00 0.00 1.28
4037 4401 4.705507 AGCTCGTTTACTCTCACTGGATAA 59.294 41.667 0.00 0.00 0.00 1.75
4038 4402 4.270834 AGCTCGTTTACTCTCACTGGATA 58.729 43.478 0.00 0.00 0.00 2.59
4039 4403 3.093057 AGCTCGTTTACTCTCACTGGAT 58.907 45.455 0.00 0.00 0.00 3.41
4040 4404 2.515854 AGCTCGTTTACTCTCACTGGA 58.484 47.619 0.00 0.00 0.00 3.86
4041 4405 3.427773 GGTAGCTCGTTTACTCTCACTGG 60.428 52.174 0.00 0.00 0.00 4.00
4042 4406 3.190744 TGGTAGCTCGTTTACTCTCACTG 59.809 47.826 0.00 0.00 0.00 3.66
4043 4407 3.418995 TGGTAGCTCGTTTACTCTCACT 58.581 45.455 0.00 0.00 0.00 3.41
4044 4408 3.844577 TGGTAGCTCGTTTACTCTCAC 57.155 47.619 0.00 0.00 0.00 3.51
4045 4409 4.438336 CGATTGGTAGCTCGTTTACTCTCA 60.438 45.833 0.00 0.00 0.00 3.27
4046 4410 4.036352 CGATTGGTAGCTCGTTTACTCTC 58.964 47.826 0.00 0.00 0.00 3.20
4047 4411 3.693085 TCGATTGGTAGCTCGTTTACTCT 59.307 43.478 0.00 0.00 36.33 3.24
4048 4412 4.025015 TCGATTGGTAGCTCGTTTACTC 57.975 45.455 0.00 0.00 36.33 2.59
4049 4413 4.650754 ATCGATTGGTAGCTCGTTTACT 57.349 40.909 0.00 0.00 36.33 2.24
4050 4414 5.107951 GCTTATCGATTGGTAGCTCGTTTAC 60.108 44.000 1.71 0.00 36.33 2.01
4051 4415 4.980434 GCTTATCGATTGGTAGCTCGTTTA 59.020 41.667 1.71 0.00 36.33 2.01
4052 4416 3.802685 GCTTATCGATTGGTAGCTCGTTT 59.197 43.478 1.71 0.00 36.33 3.60
4053 4417 3.068307 AGCTTATCGATTGGTAGCTCGTT 59.932 43.478 1.71 0.00 37.64 3.85
4054 4418 2.623889 AGCTTATCGATTGGTAGCTCGT 59.376 45.455 1.71 0.00 37.64 4.18
4055 4419 2.983136 CAGCTTATCGATTGGTAGCTCG 59.017 50.000 16.30 10.93 40.01 5.03
4056 4420 3.243907 ACCAGCTTATCGATTGGTAGCTC 60.244 47.826 16.18 0.00 41.92 4.09
4057 4421 2.700897 ACCAGCTTATCGATTGGTAGCT 59.299 45.455 16.18 15.21 41.92 3.32
4058 4422 3.060602 GACCAGCTTATCGATTGGTAGC 58.939 50.000 17.40 14.08 43.65 3.58
4059 4423 3.555168 GGGACCAGCTTATCGATTGGTAG 60.555 52.174 17.40 6.79 43.65 3.18
4060 4424 2.367567 GGGACCAGCTTATCGATTGGTA 59.632 50.000 17.40 0.00 43.65 3.25
4061 4425 1.141053 GGGACCAGCTTATCGATTGGT 59.859 52.381 17.40 17.40 46.14 3.67
4062 4426 1.417890 AGGGACCAGCTTATCGATTGG 59.582 52.381 11.52 11.52 36.76 3.16
4063 4427 2.103094 TGAGGGACCAGCTTATCGATTG 59.897 50.000 1.71 0.00 0.00 2.67
4064 4428 2.366916 CTGAGGGACCAGCTTATCGATT 59.633 50.000 1.71 0.00 0.00 3.34
4065 4429 1.967066 CTGAGGGACCAGCTTATCGAT 59.033 52.381 2.16 2.16 0.00 3.59
4066 4430 1.063942 TCTGAGGGACCAGCTTATCGA 60.064 52.381 0.00 0.00 34.28 3.59
4067 4431 1.403814 TCTGAGGGACCAGCTTATCG 58.596 55.000 0.00 0.00 34.28 2.92
4068 4432 2.968574 TCATCTGAGGGACCAGCTTATC 59.031 50.000 0.00 0.00 34.28 1.75
4069 4433 3.051940 TCATCTGAGGGACCAGCTTAT 57.948 47.619 0.00 0.00 34.28 1.73
4070 4434 2.550277 TCATCTGAGGGACCAGCTTA 57.450 50.000 0.00 0.00 34.28 3.09
4071 4435 1.661463 TTCATCTGAGGGACCAGCTT 58.339 50.000 0.00 0.00 34.28 3.74
4072 4436 3.406442 TTCATCTGAGGGACCAGCT 57.594 52.632 0.00 0.00 34.28 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.