Multiple sequence alignment - TraesCS3D01G007900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G007900 chr3D 100.000 2357 0 0 1 2357 2748638 2750994 0.000000e+00 4353
1 TraesCS3D01G007900 chr3D 80.318 818 112 27 658 1457 2688630 2689416 7.310000e-160 573
2 TraesCS3D01G007900 chr3D 87.895 190 18 3 165 351 2719356 2719543 3.940000e-53 219
3 TraesCS3D01G007900 chr3D 81.538 195 19 11 146 328 2686447 2686636 6.790000e-31 145
4 TraesCS3D01G007900 chrUn 88.752 1058 65 23 917 1929 32042553 32041505 0.000000e+00 1245
5 TraesCS3D01G007900 chrUn 93.002 443 19 2 1927 2357 32041108 32040666 9.190000e-179 636
6 TraesCS3D01G007900 chrUn 80.588 340 36 19 658 990 318993468 318993152 3.920000e-58 235
7 TraesCS3D01G007900 chrUn 80.727 275 26 15 81 351 63656734 63656483 3.090000e-44 189
8 TraesCS3D01G007900 chrUn 80.727 275 26 15 81 351 317286302 317286553 3.090000e-44 189
9 TraesCS3D01G007900 chr3B 88.739 444 16 3 1924 2357 3098016 3098435 1.620000e-141 512
10 TraesCS3D01G007900 chr3B 89.362 188 18 2 165 351 3073759 3073573 3.920000e-58 235
11 TraesCS3D01G007900 chr3B 85.625 160 16 6 176 328 3081944 3081785 6.740000e-36 161
12 TraesCS3D01G007900 chr3B 88.889 126 10 3 2141 2263 3066807 3066683 4.060000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G007900 chr3D 2748638 2750994 2356 False 4353.0 4353 100.000 1 2357 1 chr3D.!!$F2 2356
1 TraesCS3D01G007900 chr3D 2686447 2689416 2969 False 359.0 573 80.928 146 1457 2 chr3D.!!$F3 1311
2 TraesCS3D01G007900 chrUn 32040666 32042553 1887 True 940.5 1245 90.877 917 2357 2 chrUn.!!$R3 1440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.032515 TCGATGCCCTCTAACCCTGA 60.033 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 3616 0.449388 GCCATCAGGTGAAAGCTTCG 59.551 55.0 0.0 0.0 46.63 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.690913 AATGCGTATAGTATTATAGTAGGTCCA 57.309 33.333 0.00 0.00 33.32 4.02
54 55 9.863650 ATGCGTATAGTATTATAGTAGGTCCAT 57.136 33.333 0.00 0.00 0.00 3.41
67 68 5.505173 GTAGGTCCATAACGTACTTAGCA 57.495 43.478 0.00 0.00 43.01 3.49
68 69 4.382345 AGGTCCATAACGTACTTAGCAC 57.618 45.455 0.00 0.00 0.00 4.40
69 70 3.765511 AGGTCCATAACGTACTTAGCACA 59.234 43.478 0.00 0.00 0.00 4.57
70 71 4.404715 AGGTCCATAACGTACTTAGCACAT 59.595 41.667 0.00 0.00 0.00 3.21
71 72 4.506654 GGTCCATAACGTACTTAGCACATG 59.493 45.833 0.00 0.00 0.00 3.21
72 73 5.345702 GTCCATAACGTACTTAGCACATGA 58.654 41.667 0.00 0.00 0.00 3.07
73 74 5.983720 GTCCATAACGTACTTAGCACATGAT 59.016 40.000 0.00 0.00 0.00 2.45
74 75 6.144080 GTCCATAACGTACTTAGCACATGATC 59.856 42.308 0.00 0.00 0.00 2.92
75 76 5.983118 CCATAACGTACTTAGCACATGATCA 59.017 40.000 0.00 0.00 0.00 2.92
76 77 6.074302 CCATAACGTACTTAGCACATGATCAC 60.074 42.308 0.00 0.00 0.00 3.06
77 78 4.720649 ACGTACTTAGCACATGATCACT 57.279 40.909 0.00 0.00 0.00 3.41
78 79 4.673441 ACGTACTTAGCACATGATCACTC 58.327 43.478 0.00 0.00 0.00 3.51
79 80 4.399618 ACGTACTTAGCACATGATCACTCT 59.600 41.667 0.00 0.00 0.00 3.24
80 81 4.973051 CGTACTTAGCACATGATCACTCTC 59.027 45.833 0.00 0.00 0.00 3.20
81 82 5.220951 CGTACTTAGCACATGATCACTCTCT 60.221 44.000 0.00 0.00 0.00 3.10
82 83 6.017852 CGTACTTAGCACATGATCACTCTCTA 60.018 42.308 0.00 0.00 0.00 2.43
83 84 6.142818 ACTTAGCACATGATCACTCTCTAC 57.857 41.667 0.00 0.00 0.00 2.59
84 85 5.068460 ACTTAGCACATGATCACTCTCTACC 59.932 44.000 0.00 0.00 0.00 3.18
85 86 3.369175 AGCACATGATCACTCTCTACCA 58.631 45.455 0.00 0.00 0.00 3.25
86 87 3.771479 AGCACATGATCACTCTCTACCAA 59.229 43.478 0.00 0.00 0.00 3.67
87 88 4.223700 AGCACATGATCACTCTCTACCAAA 59.776 41.667 0.00 0.00 0.00 3.28
88 89 4.331168 GCACATGATCACTCTCTACCAAAC 59.669 45.833 0.00 0.00 0.00 2.93
89 90 5.728471 CACATGATCACTCTCTACCAAACT 58.272 41.667 0.00 0.00 0.00 2.66
90 91 5.809562 CACATGATCACTCTCTACCAAACTC 59.190 44.000 0.00 0.00 0.00 3.01
91 92 5.481824 ACATGATCACTCTCTACCAAACTCA 59.518 40.000 0.00 0.00 0.00 3.41
92 93 6.155910 ACATGATCACTCTCTACCAAACTCAT 59.844 38.462 0.00 0.00 0.00 2.90
93 94 5.970592 TGATCACTCTCTACCAAACTCATG 58.029 41.667 0.00 0.00 0.00 3.07
94 95 4.193826 TCACTCTCTACCAAACTCATGC 57.806 45.455 0.00 0.00 0.00 4.06
95 96 3.578282 TCACTCTCTACCAAACTCATGCA 59.422 43.478 0.00 0.00 0.00 3.96
96 97 3.931468 CACTCTCTACCAAACTCATGCAG 59.069 47.826 0.00 0.00 0.00 4.41
97 98 2.935201 CTCTCTACCAAACTCATGCAGC 59.065 50.000 0.00 0.00 0.00 5.25
98 99 2.302733 TCTCTACCAAACTCATGCAGCA 59.697 45.455 0.00 0.00 0.00 4.41
99 100 3.054875 TCTCTACCAAACTCATGCAGCAT 60.055 43.478 0.52 0.52 0.00 3.79
100 101 3.273434 TCTACCAAACTCATGCAGCATC 58.727 45.455 4.38 0.00 0.00 3.91
101 102 1.913778 ACCAAACTCATGCAGCATCA 58.086 45.000 4.38 0.00 0.00 3.07
102 103 1.542915 ACCAAACTCATGCAGCATCAC 59.457 47.619 4.38 0.00 0.00 3.06
103 104 1.816835 CCAAACTCATGCAGCATCACT 59.183 47.619 4.38 0.00 0.00 3.41
104 105 2.230508 CCAAACTCATGCAGCATCACTT 59.769 45.455 4.38 0.00 0.00 3.16
105 106 3.499048 CAAACTCATGCAGCATCACTTC 58.501 45.455 4.38 0.00 0.00 3.01
106 107 2.484742 ACTCATGCAGCATCACTTCA 57.515 45.000 4.38 0.00 0.00 3.02
107 108 2.082231 ACTCATGCAGCATCACTTCAC 58.918 47.619 4.38 0.00 0.00 3.18
108 109 2.290134 ACTCATGCAGCATCACTTCACT 60.290 45.455 4.38 0.00 0.00 3.41
109 110 2.747989 CTCATGCAGCATCACTTCACTT 59.252 45.455 4.38 0.00 0.00 3.16
110 111 2.745821 TCATGCAGCATCACTTCACTTC 59.254 45.455 4.38 0.00 0.00 3.01
111 112 2.556144 TGCAGCATCACTTCACTTCT 57.444 45.000 0.00 0.00 0.00 2.85
112 113 2.854963 TGCAGCATCACTTCACTTCTT 58.145 42.857 0.00 0.00 0.00 2.52
113 114 3.216800 TGCAGCATCACTTCACTTCTTT 58.783 40.909 0.00 0.00 0.00 2.52
114 115 4.388485 TGCAGCATCACTTCACTTCTTTA 58.612 39.130 0.00 0.00 0.00 1.85
115 116 4.453478 TGCAGCATCACTTCACTTCTTTAG 59.547 41.667 0.00 0.00 0.00 1.85
116 117 4.671250 GCAGCATCACTTCACTTCTTTAGC 60.671 45.833 0.00 0.00 0.00 3.09
117 118 4.006319 AGCATCACTTCACTTCTTTAGCC 58.994 43.478 0.00 0.00 0.00 3.93
118 119 3.753272 GCATCACTTCACTTCTTTAGCCA 59.247 43.478 0.00 0.00 0.00 4.75
119 120 4.397417 GCATCACTTCACTTCTTTAGCCAT 59.603 41.667 0.00 0.00 0.00 4.40
120 121 5.675575 GCATCACTTCACTTCTTTAGCCATG 60.676 44.000 0.00 0.00 0.00 3.66
121 122 5.227569 TCACTTCACTTCTTTAGCCATGA 57.772 39.130 0.00 0.00 0.00 3.07
122 123 5.809001 TCACTTCACTTCTTTAGCCATGAT 58.191 37.500 0.00 0.00 0.00 2.45
123 124 5.877012 TCACTTCACTTCTTTAGCCATGATC 59.123 40.000 0.00 0.00 0.00 2.92
124 125 4.872691 ACTTCACTTCTTTAGCCATGATCG 59.127 41.667 0.00 0.00 0.00 3.69
125 126 4.736126 TCACTTCTTTAGCCATGATCGA 57.264 40.909 0.00 0.00 0.00 3.59
126 127 5.282055 TCACTTCTTTAGCCATGATCGAT 57.718 39.130 0.00 0.00 0.00 3.59
127 128 5.292765 TCACTTCTTTAGCCATGATCGATC 58.707 41.667 18.72 18.72 0.00 3.69
128 129 4.149571 CACTTCTTTAGCCATGATCGATCG 59.850 45.833 20.03 9.36 0.00 3.69
129 130 4.038042 ACTTCTTTAGCCATGATCGATCGA 59.962 41.667 21.86 21.86 0.00 3.59
130 131 4.790765 TCTTTAGCCATGATCGATCGAT 57.209 40.909 29.76 29.76 37.59 3.59
144 145 2.869897 GATCGATCGATGCCCTCTAAC 58.130 52.381 33.86 13.03 34.60 2.34
149 150 0.032515 TCGATGCCCTCTAACCCTGA 60.033 55.000 0.00 0.00 0.00 3.86
162 163 3.324930 CCTGAGCTCACCCTGCCA 61.325 66.667 13.74 0.00 0.00 4.92
164 165 1.302285 CTGAGCTCACCCTGCCATT 59.698 57.895 13.74 0.00 0.00 3.16
165 166 1.001764 TGAGCTCACCCTGCCATTG 60.002 57.895 13.74 0.00 0.00 2.82
168 169 3.136123 CTCACCCTGCCATTGCCG 61.136 66.667 0.00 0.00 36.33 5.69
169 170 3.925630 CTCACCCTGCCATTGCCGT 62.926 63.158 0.00 0.00 36.33 5.68
170 171 2.990967 CACCCTGCCATTGCCGTT 60.991 61.111 0.00 0.00 36.33 4.44
171 172 2.676471 ACCCTGCCATTGCCGTTC 60.676 61.111 0.00 0.00 36.33 3.95
172 173 3.451894 CCCTGCCATTGCCGTTCC 61.452 66.667 0.00 0.00 36.33 3.62
173 174 2.676121 CCTGCCATTGCCGTTCCA 60.676 61.111 0.00 0.00 36.33 3.53
174 175 2.274645 CCTGCCATTGCCGTTCCAA 61.275 57.895 0.00 0.00 36.33 3.53
179 180 0.808755 CCATTGCCGTTCCAACCTAC 59.191 55.000 0.00 0.00 0.00 3.18
208 209 3.746436 TGGCTGGCCATGGCTCAT 61.746 61.111 34.70 0.00 41.89 2.90
221 222 4.559063 CTCATGGGGAGCAGGGCG 62.559 72.222 0.00 0.00 36.69 6.13
252 259 0.388907 GTTCGCCGTTAGTGCCACTA 60.389 55.000 0.00 0.00 0.00 2.74
271 280 7.066887 TGCCACTAACAATAACTAATGTGGATG 59.933 37.037 12.26 0.00 44.40 3.51
272 281 7.468631 GCCACTAACAATAACTAATGTGGATGG 60.469 40.741 12.26 0.00 44.40 3.51
282 291 1.229131 ATGTGGATGGCTCCCAGATT 58.771 50.000 3.30 0.00 41.29 2.40
308 317 4.678840 GCAAGTGGCATATTTCCTTTCCTG 60.679 45.833 0.00 0.00 43.97 3.86
311 320 2.670939 GGCATATTTCCTTTCCTGCCT 58.329 47.619 4.19 0.00 44.47 4.75
312 321 2.625314 GGCATATTTCCTTTCCTGCCTC 59.375 50.000 4.19 0.00 44.47 4.70
313 322 2.291741 GCATATTTCCTTTCCTGCCTCG 59.708 50.000 0.00 0.00 0.00 4.63
314 323 2.038387 TATTTCCTTTCCTGCCTCGC 57.962 50.000 0.00 0.00 0.00 5.03
315 324 0.329596 ATTTCCTTTCCTGCCTCGCT 59.670 50.000 0.00 0.00 0.00 4.93
317 326 2.124942 CCTTTCCTGCCTCGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
318 327 2.664081 CCTTTCCTGCCTCGCTCCT 61.664 63.158 0.00 0.00 0.00 3.69
319 328 1.153469 CTTTCCTGCCTCGCTCCTC 60.153 63.158 0.00 0.00 0.00 3.71
321 330 3.905153 TTCCTGCCTCGCTCCTCCA 62.905 63.158 0.00 0.00 0.00 3.86
327 347 2.300152 CTGCCTCGCTCCTCCATATAAA 59.700 50.000 0.00 0.00 0.00 1.40
336 356 4.287067 GCTCCTCCATATAAACCTCCATCA 59.713 45.833 0.00 0.00 0.00 3.07
337 357 5.045286 GCTCCTCCATATAAACCTCCATCAT 60.045 44.000 0.00 0.00 0.00 2.45
338 358 6.627087 TCCTCCATATAAACCTCCATCATC 57.373 41.667 0.00 0.00 0.00 2.92
345 365 3.278668 AAACCTCCATCATCAGAGCTG 57.721 47.619 0.00 0.00 0.00 4.24
351 371 2.694109 TCCATCATCAGAGCTGAGACTG 59.306 50.000 6.34 0.00 43.61 3.51
352 372 2.694109 CCATCATCAGAGCTGAGACTGA 59.306 50.000 10.95 10.95 43.61 3.41
353 373 3.132467 CCATCATCAGAGCTGAGACTGAA 59.868 47.826 12.16 0.63 44.47 3.02
354 374 4.382793 CCATCATCAGAGCTGAGACTGAAA 60.383 45.833 12.16 6.14 44.47 2.69
355 375 5.361427 CATCATCAGAGCTGAGACTGAAAT 58.639 41.667 12.16 7.68 44.47 2.17
356 376 5.008619 TCATCAGAGCTGAGACTGAAATC 57.991 43.478 12.16 0.00 44.47 2.17
365 416 6.757237 AGCTGAGACTGAAATCCATATGTAG 58.243 40.000 1.24 0.00 0.00 2.74
368 419 7.055667 TGAGACTGAAATCCATATGTAGGAC 57.944 40.000 1.24 0.00 38.13 3.85
372 423 6.058183 ACTGAAATCCATATGTAGGACAAGC 58.942 40.000 1.24 0.00 38.13 4.01
373 424 6.126652 ACTGAAATCCATATGTAGGACAAGCT 60.127 38.462 1.24 0.00 38.13 3.74
375 426 7.801104 TGAAATCCATATGTAGGACAAGCTAA 58.199 34.615 1.24 0.00 38.13 3.09
377 428 7.380423 AATCCATATGTAGGACAAGCTAAGT 57.620 36.000 1.24 0.00 38.13 2.24
381 432 4.910458 ATGTAGGACAAGCTAAGTTGGT 57.090 40.909 0.00 0.00 0.00 3.67
382 433 7.418597 CCATATGTAGGACAAGCTAAGTTGGTA 60.419 40.741 1.24 0.00 0.00 3.25
383 434 5.401531 TGTAGGACAAGCTAAGTTGGTAG 57.598 43.478 0.00 0.00 0.00 3.18
384 435 4.836736 TGTAGGACAAGCTAAGTTGGTAGT 59.163 41.667 0.00 0.00 0.00 2.73
385 436 6.012113 TGTAGGACAAGCTAAGTTGGTAGTA 58.988 40.000 0.00 0.00 0.00 1.82
388 439 6.465084 AGGACAAGCTAAGTTGGTAGTAAAG 58.535 40.000 0.00 0.00 0.00 1.85
389 440 6.269307 AGGACAAGCTAAGTTGGTAGTAAAGA 59.731 38.462 0.00 0.00 0.00 2.52
391 442 8.255905 GGACAAGCTAAGTTGGTAGTAAAGATA 58.744 37.037 0.00 0.00 0.00 1.98
395 446 6.670902 AGCTAAGTTGGTAGTAAAGATACCCA 59.329 38.462 0.00 0.00 41.78 4.51
396 447 6.760298 GCTAAGTTGGTAGTAAAGATACCCAC 59.240 42.308 0.00 0.00 41.78 4.61
398 449 6.541934 AGTTGGTAGTAAAGATACCCACTC 57.458 41.667 3.69 0.00 42.59 3.51
399 450 5.126707 AGTTGGTAGTAAAGATACCCACTCG 59.873 44.000 3.69 0.00 42.59 4.18
400 451 4.858850 TGGTAGTAAAGATACCCACTCGA 58.141 43.478 0.00 0.00 41.78 4.04
401 452 5.263599 TGGTAGTAAAGATACCCACTCGAA 58.736 41.667 0.00 0.00 41.78 3.71
403 454 4.367386 AGTAAAGATACCCACTCGAACG 57.633 45.455 0.00 0.00 32.08 3.95
404 455 2.667473 AAAGATACCCACTCGAACGG 57.333 50.000 0.00 0.00 0.00 4.44
405 456 1.843368 AAGATACCCACTCGAACGGA 58.157 50.000 1.30 0.00 0.00 4.69
406 457 1.101331 AGATACCCACTCGAACGGAC 58.899 55.000 1.30 0.00 0.00 4.79
407 458 1.101331 GATACCCACTCGAACGGACT 58.899 55.000 1.30 0.00 0.00 3.85
409 460 1.300971 TACCCACTCGAACGGACTCG 61.301 60.000 1.30 0.00 43.02 4.18
410 461 2.178521 CCACTCGAACGGACTCGG 59.821 66.667 4.35 0.00 41.39 4.63
411 462 2.623915 CCACTCGAACGGACTCGGT 61.624 63.158 4.35 0.00 41.39 4.69
413 464 2.504244 CTCGAACGGACTCGGTGC 60.504 66.667 4.35 0.00 41.39 5.01
445 1022 4.838152 CGCGCCAGTGCCACCTAT 62.838 66.667 0.00 0.00 0.00 2.57
446 1023 2.504032 GCGCCAGTGCCACCTATA 59.496 61.111 0.00 0.00 0.00 1.31
447 1024 1.071471 GCGCCAGTGCCACCTATAT 59.929 57.895 0.00 0.00 0.00 0.86
448 1025 1.230635 GCGCCAGTGCCACCTATATG 61.231 60.000 0.00 0.00 0.00 1.78
449 1026 0.603707 CGCCAGTGCCACCTATATGG 60.604 60.000 0.00 0.00 43.26 2.74
450 1027 0.250901 GCCAGTGCCACCTATATGGG 60.251 60.000 3.06 3.06 40.43 4.00
451 1028 1.140312 CCAGTGCCACCTATATGGGT 58.860 55.000 4.64 4.64 40.43 4.51
467 1044 9.712305 CCTATATGGGTGTCTAAAAAGTATCTG 57.288 37.037 0.00 0.00 0.00 2.90
471 1048 6.833041 TGGGTGTCTAAAAAGTATCTGAACA 58.167 36.000 0.00 0.00 0.00 3.18
473 1050 6.708949 GGGTGTCTAAAAAGTATCTGAACACA 59.291 38.462 0.00 0.00 0.00 3.72
474 1051 7.307811 GGGTGTCTAAAAAGTATCTGAACACAC 60.308 40.741 0.00 0.00 0.00 3.82
476 1053 8.276325 GTGTCTAAAAAGTATCTGAACACACTG 58.724 37.037 0.00 0.00 0.00 3.66
477 1054 8.201464 TGTCTAAAAAGTATCTGAACACACTGA 58.799 33.333 0.00 0.00 0.00 3.41
480 1057 3.223423 AGTATCTGAACACACTGAGCG 57.777 47.619 0.00 0.00 0.00 5.03
481 1058 1.656095 GTATCTGAACACACTGAGCGC 59.344 52.381 0.00 0.00 0.00 5.92
483 1060 0.104855 TCTGAACACACTGAGCGCTT 59.895 50.000 13.26 0.00 0.00 4.68
484 1061 0.234106 CTGAACACACTGAGCGCTTG 59.766 55.000 13.26 9.04 0.00 4.01
486 1063 2.754805 GAACACACTGAGCGCTTGCG 62.755 60.000 13.26 10.90 45.69 4.85
487 1064 3.037833 CACACTGAGCGCTTGCGA 61.038 61.111 19.55 0.00 45.69 5.10
488 1065 2.736236 ACACTGAGCGCTTGCGAG 60.736 61.111 19.55 8.27 45.69 5.03
489 1066 2.431430 CACTGAGCGCTTGCGAGA 60.431 61.111 19.55 0.30 45.69 4.04
490 1067 1.808799 CACTGAGCGCTTGCGAGAT 60.809 57.895 19.55 3.38 45.69 2.75
498 1791 1.219124 GCTTGCGAGATGAGGACCA 59.781 57.895 4.70 0.00 0.00 4.02
499 1792 0.391661 GCTTGCGAGATGAGGACCAA 60.392 55.000 4.70 0.00 0.00 3.67
503 1796 1.134699 TGCGAGATGAGGACCAATCAC 60.135 52.381 9.23 3.19 0.00 3.06
506 1799 3.797184 GCGAGATGAGGACCAATCACTAC 60.797 52.174 9.23 0.00 0.00 2.73
509 1802 2.225382 TGAGGACCAATCACTACCGA 57.775 50.000 0.00 0.00 0.00 4.69
513 1806 3.104512 AGGACCAATCACTACCGAATCA 58.895 45.455 0.00 0.00 0.00 2.57
514 1807 3.517901 AGGACCAATCACTACCGAATCAA 59.482 43.478 0.00 0.00 0.00 2.57
515 1808 4.164221 AGGACCAATCACTACCGAATCAAT 59.836 41.667 0.00 0.00 0.00 2.57
516 1809 4.273480 GGACCAATCACTACCGAATCAATG 59.727 45.833 0.00 0.00 0.00 2.82
519 1812 5.065914 CCAATCACTACCGAATCAATGGAT 58.934 41.667 0.00 0.00 34.43 3.41
520 1813 5.180117 CCAATCACTACCGAATCAATGGATC 59.820 44.000 0.00 0.00 31.88 3.36
521 1814 5.551305 ATCACTACCGAATCAATGGATCA 57.449 39.130 0.00 0.00 31.88 2.92
522 1815 5.551305 TCACTACCGAATCAATGGATCAT 57.449 39.130 0.00 0.00 31.88 2.45
523 1816 5.299949 TCACTACCGAATCAATGGATCATG 58.700 41.667 0.00 0.00 31.88 3.07
524 1817 5.059161 CACTACCGAATCAATGGATCATGT 58.941 41.667 0.00 0.00 31.88 3.21
526 1819 3.133691 ACCGAATCAATGGATCATGTCG 58.866 45.455 0.00 0.00 31.88 4.35
528 1821 2.410646 CGAATCAATGGATCATGTCGCG 60.411 50.000 0.00 0.00 31.88 5.87
529 1822 2.245159 ATCAATGGATCATGTCGCGT 57.755 45.000 5.77 0.00 0.00 6.01
530 1823 2.022764 TCAATGGATCATGTCGCGTT 57.977 45.000 5.77 0.00 0.00 4.84
531 1824 1.665169 TCAATGGATCATGTCGCGTTG 59.335 47.619 5.77 2.85 0.00 4.10
532 1825 0.378257 AATGGATCATGTCGCGTTGC 59.622 50.000 5.77 0.00 0.00 4.17
534 1827 0.744057 TGGATCATGTCGCGTTGCAT 60.744 50.000 5.77 6.88 0.00 3.96
536 1829 0.927083 GATCATGTCGCGTTGCATGC 60.927 55.000 24.59 11.82 41.44 4.06
537 1830 1.371337 ATCATGTCGCGTTGCATGCT 61.371 50.000 24.59 17.66 41.44 3.79
539 1832 2.034317 ATGTCGCGTTGCATGCTGA 61.034 52.632 20.33 4.61 0.00 4.26
540 1833 1.576451 ATGTCGCGTTGCATGCTGAA 61.576 50.000 20.33 2.28 0.00 3.02
542 1835 2.872925 CGCGTTGCATGCTGAAGC 60.873 61.111 20.33 18.61 42.50 3.86
560 1853 2.615489 GCAAGAGCTTTCAGCAAGAG 57.385 50.000 0.00 0.00 45.56 2.85
561 1854 1.401278 GCAAGAGCTTTCAGCAAGAGC 60.401 52.381 0.00 0.00 45.56 4.09
563 1856 0.673022 AGAGCTTTCAGCAAGAGCGG 60.673 55.000 0.00 0.00 45.56 5.52
581 2061 1.799917 CGGGCACGTTCGCTCTTTATA 60.800 52.381 0.00 0.00 34.81 0.98
582 2062 2.273557 GGGCACGTTCGCTCTTTATAA 58.726 47.619 0.00 0.00 0.00 0.98
583 2063 2.870411 GGGCACGTTCGCTCTTTATAAT 59.130 45.455 0.00 0.00 0.00 1.28
584 2064 3.311596 GGGCACGTTCGCTCTTTATAATT 59.688 43.478 0.00 0.00 0.00 1.40
588 2068 5.188194 CACGTTCGCTCTTTATAATTTCCG 58.812 41.667 0.00 0.00 0.00 4.30
593 2073 7.269724 CGTTCGCTCTTTATAATTTCCGTTTTT 59.730 33.333 0.00 0.00 0.00 1.94
617 2097 9.613428 TTTTGTCTCCATAGATACTTAACCATG 57.387 33.333 0.00 0.00 33.30 3.66
618 2098 6.759272 TGTCTCCATAGATACTTAACCATGC 58.241 40.000 0.00 0.00 33.30 4.06
619 2099 6.166982 GTCTCCATAGATACTTAACCATGCC 58.833 44.000 0.00 0.00 33.30 4.40
620 2100 5.843969 TCTCCATAGATACTTAACCATGCCA 59.156 40.000 0.00 0.00 0.00 4.92
621 2101 6.501805 TCTCCATAGATACTTAACCATGCCAT 59.498 38.462 0.00 0.00 0.00 4.40
622 2102 6.475504 TCCATAGATACTTAACCATGCCATG 58.524 40.000 0.00 0.00 0.00 3.66
624 2104 3.490348 AGATACTTAACCATGCCATGCC 58.510 45.455 0.00 0.00 0.00 4.40
625 2105 2.065899 TACTTAACCATGCCATGCCC 57.934 50.000 0.00 0.00 0.00 5.36
626 2106 0.687427 ACTTAACCATGCCATGCCCC 60.687 55.000 0.00 0.00 0.00 5.80
628 2108 2.506884 TTAACCATGCCATGCCCCGT 62.507 55.000 0.00 0.00 0.00 5.28
629 2109 2.506884 TAACCATGCCATGCCCCGTT 62.507 55.000 0.00 0.89 0.00 4.44
633 2113 1.453745 ATGCCATGCCCCGTTAGTG 60.454 57.895 0.00 0.00 0.00 2.74
634 2114 2.045340 GCCATGCCCCGTTAGTGT 60.045 61.111 0.00 0.00 0.00 3.55
635 2115 2.406616 GCCATGCCCCGTTAGTGTG 61.407 63.158 0.00 0.00 0.00 3.82
636 2116 1.748879 CCATGCCCCGTTAGTGTGG 60.749 63.158 0.00 0.00 0.00 4.17
637 2117 1.748879 CATGCCCCGTTAGTGTGGG 60.749 63.158 0.00 0.00 45.58 4.61
640 2120 2.674754 CCCCGTTAGTGTGGGCAT 59.325 61.111 0.00 0.00 44.58 4.40
642 2122 0.253610 CCCCGTTAGTGTGGGCATTA 59.746 55.000 0.00 0.00 44.58 1.90
646 2126 1.924524 CGTTAGTGTGGGCATTAGACG 59.075 52.381 0.00 0.00 0.00 4.18
647 2127 1.664151 GTTAGTGTGGGCATTAGACGC 59.336 52.381 0.00 0.00 0.00 5.19
653 2133 2.280186 GGCATTAGACGCCCGGAG 60.280 66.667 0.73 0.00 44.22 4.63
656 2136 0.318784 GCATTAGACGCCCGGAGTAG 60.319 60.000 0.73 0.00 0.00 2.57
664 2341 0.101939 CGCCCGGAGTAGTAACCTTC 59.898 60.000 0.73 0.00 0.00 3.46
669 2346 2.292845 CCGGAGTAGTAACCTTCGATCC 59.707 54.545 0.00 0.00 0.00 3.36
674 2351 1.867363 AGTAACCTTCGATCCAGCCT 58.133 50.000 0.00 0.00 0.00 4.58
677 2354 3.773119 AGTAACCTTCGATCCAGCCTTAA 59.227 43.478 0.00 0.00 0.00 1.85
679 2356 5.601313 AGTAACCTTCGATCCAGCCTTAATA 59.399 40.000 0.00 0.00 0.00 0.98
680 2357 5.568620 AACCTTCGATCCAGCCTTAATAT 57.431 39.130 0.00 0.00 0.00 1.28
681 2358 5.153950 ACCTTCGATCCAGCCTTAATATC 57.846 43.478 0.00 0.00 0.00 1.63
704 2381 6.679542 TCTGGTCTAGTGGGAATATAGTTCA 58.320 40.000 0.00 0.00 0.00 3.18
709 2386 5.839063 TCTAGTGGGAATATAGTTCAGGTGG 59.161 44.000 0.00 0.00 0.00 4.61
710 2387 3.136626 AGTGGGAATATAGTTCAGGTGGC 59.863 47.826 0.00 0.00 0.00 5.01
711 2388 3.136626 GTGGGAATATAGTTCAGGTGGCT 59.863 47.826 0.00 0.00 0.00 4.75
712 2389 3.391296 TGGGAATATAGTTCAGGTGGCTC 59.609 47.826 0.00 0.00 0.00 4.70
746 2423 5.011635 GGCTTTTCCAAGAAAAGAATACCCA 59.988 40.000 26.16 0.00 39.04 4.51
748 2425 7.161404 GCTTTTCCAAGAAAAGAATACCCAAT 58.839 34.615 26.16 0.00 39.04 3.16
749 2426 7.118245 GCTTTTCCAAGAAAAGAATACCCAATG 59.882 37.037 26.16 4.23 39.04 2.82
751 2428 7.847711 TTCCAAGAAAAGAATACCCAATGAA 57.152 32.000 0.00 0.00 0.00 2.57
753 2430 6.210584 TCCAAGAAAAGAATACCCAATGAACC 59.789 38.462 0.00 0.00 0.00 3.62
755 2432 7.256296 CCAAGAAAAGAATACCCAATGAACCTT 60.256 37.037 0.00 0.00 0.00 3.50
795 2474 6.069789 ACATCTTGTAGCCATGATATAGCCAT 60.070 38.462 0.00 0.00 34.63 4.40
796 2475 5.737860 TCTTGTAGCCATGATATAGCCATG 58.262 41.667 0.00 9.68 40.66 3.66
797 2476 5.484998 TCTTGTAGCCATGATATAGCCATGA 59.515 40.000 15.57 0.00 42.89 3.07
798 2477 5.963214 TGTAGCCATGATATAGCCATGAT 57.037 39.130 15.57 8.88 42.89 2.45
799 2478 5.677567 TGTAGCCATGATATAGCCATGATG 58.322 41.667 15.57 0.58 42.89 3.07
800 2479 4.166246 AGCCATGATATAGCCATGATGG 57.834 45.455 7.21 7.21 42.89 3.51
801 2480 3.784202 AGCCATGATATAGCCATGATGGA 59.216 43.478 17.22 0.00 42.89 3.41
803 2482 5.103643 AGCCATGATATAGCCATGATGGATT 60.104 40.000 17.22 4.84 42.89 3.01
804 2483 5.009710 GCCATGATATAGCCATGATGGATTG 59.990 44.000 17.22 2.50 42.89 2.67
807 2486 5.748402 TGATATAGCCATGATGGATTGTCC 58.252 41.667 17.22 0.38 40.96 4.02
809 2488 4.736611 ATAGCCATGATGGATTGTCCTT 57.263 40.909 17.22 0.00 40.96 3.36
810 2489 2.662866 AGCCATGATGGATTGTCCTTG 58.337 47.619 17.22 0.00 40.96 3.61
811 2490 2.024655 AGCCATGATGGATTGTCCTTGT 60.025 45.455 17.22 0.00 40.96 3.16
812 2491 2.100252 GCCATGATGGATTGTCCTTGTG 59.900 50.000 17.22 0.00 40.96 3.33
813 2492 2.691526 CCATGATGGATTGTCCTTGTGG 59.308 50.000 5.27 0.00 40.96 4.17
814 2493 3.623703 CATGATGGATTGTCCTTGTGGA 58.376 45.455 0.00 0.00 37.46 4.02
815 2494 4.212716 CATGATGGATTGTCCTTGTGGAT 58.787 43.478 0.00 0.00 45.29 3.41
816 2495 5.379187 CATGATGGATTGTCCTTGTGGATA 58.621 41.667 0.00 0.00 45.29 2.59
817 2496 4.780815 TGATGGATTGTCCTTGTGGATAC 58.219 43.478 0.00 0.00 45.29 2.24
818 2497 4.227073 TGATGGATTGTCCTTGTGGATACA 59.773 41.667 0.00 0.00 45.29 2.29
819 2498 4.860802 TGGATTGTCCTTGTGGATACAT 57.139 40.909 0.00 0.00 43.73 2.29
820 2499 4.525996 TGGATTGTCCTTGTGGATACATG 58.474 43.478 0.00 0.00 43.73 3.21
821 2500 4.018506 TGGATTGTCCTTGTGGATACATGT 60.019 41.667 2.69 2.69 43.73 3.21
822 2501 4.949856 GGATTGTCCTTGTGGATACATGTT 59.050 41.667 2.30 0.00 45.29 2.71
823 2502 5.066505 GGATTGTCCTTGTGGATACATGTTC 59.933 44.000 2.30 1.40 45.29 3.18
824 2503 7.850027 GGATTGTCCTTGTGGATACATGTTCC 61.850 46.154 2.30 11.57 45.29 3.62
825 2504 9.913041 GGATTGTCCTTGTGGATACATGTTCCT 62.913 44.444 20.58 2.66 45.29 3.36
844 2523 2.022195 CTTAGTAGCTGCCCGTAGACA 58.978 52.381 0.00 0.00 0.00 3.41
848 2527 0.106167 TAGCTGCCCGTAGACAGGAT 60.106 55.000 0.00 0.00 33.19 3.24
890 2574 9.467796 AATTATTATTGGGCTCCTAGATTTAGC 57.532 33.333 0.00 0.00 35.47 3.09
892 2576 6.454223 TTATTGGGCTCCTAGATTTAGCAT 57.546 37.500 0.00 0.00 38.01 3.79
896 2580 3.406764 GGCTCCTAGATTTAGCATGTGG 58.593 50.000 0.00 0.00 38.01 4.17
898 2582 4.455606 GCTCCTAGATTTAGCATGTGGTT 58.544 43.478 0.00 0.00 36.26 3.67
917 2601 1.714541 TTGCTTCCTTTCATGGCCAA 58.285 45.000 10.96 0.00 0.00 4.52
920 2604 1.067354 GCTTCCTTTCATGGCCAACAG 60.067 52.381 10.96 2.59 0.00 3.16
990 2682 1.065854 CCTCGCCTCACCATCTTTTCT 60.066 52.381 0.00 0.00 0.00 2.52
993 2685 2.237143 TCGCCTCACCATCTTTTCTGAT 59.763 45.455 0.00 0.00 0.00 2.90
996 2688 4.635765 CGCCTCACCATCTTTTCTGATAAA 59.364 41.667 0.00 0.00 0.00 1.40
997 2689 5.123820 CGCCTCACCATCTTTTCTGATAAAA 59.876 40.000 0.00 0.00 0.00 1.52
1008 2700 6.664816 TCTTTTCTGATAAAACCATGGATGCT 59.335 34.615 21.47 0.00 0.00 3.79
1030 2722 3.095163 CTCCCCCTGCAGCTCCAT 61.095 66.667 8.66 0.00 0.00 3.41
1032 2724 3.095163 CCCCCTGCAGCTCCATCT 61.095 66.667 8.66 0.00 0.00 2.90
1055 2747 3.897239 CACCTCTAGACCTGTCTCTCAT 58.103 50.000 2.48 0.00 40.93 2.90
1096 2788 0.037447 GGCTGTTCTTCCTTCTGGCT 59.963 55.000 0.00 0.00 0.00 4.75
1101 2793 0.037303 TTCTTCCTTCTGGCTGCTGG 59.963 55.000 0.00 0.00 0.00 4.85
1131 2823 0.909610 GTGGTGGGAGTGGGAGATCA 60.910 60.000 0.00 0.00 0.00 2.92
1269 2961 3.314331 CCTGACCACCCTCGTGCT 61.314 66.667 0.00 0.00 38.79 4.40
1312 3010 3.457234 GCATACCTTGATGATGACGACA 58.543 45.455 0.00 0.00 0.00 4.35
1324 3022 1.947642 GACGACAACGACGGCAAGT 60.948 57.895 0.00 0.00 42.66 3.16
1376 3074 7.937880 GCTTTAATTAGCTCTAGCACATGTGTG 60.938 40.741 26.01 16.37 45.16 3.82
1436 3136 4.268522 GCAATTGCTATACGGTTTGTACG 58.731 43.478 23.21 0.00 35.30 3.67
1465 3165 7.274250 GCTAGTTTCCTGCAATGAGTTAATTTG 59.726 37.037 0.00 0.00 0.00 2.32
1555 3256 5.040635 TGGTTTCGAAAAGCAATGACTTTC 58.959 37.500 13.10 0.00 38.92 2.62
1556 3257 5.040635 GGTTTCGAAAAGCAATGACTTTCA 58.959 37.500 13.10 0.00 38.92 2.69
1559 3260 5.687770 TCGAAAAGCAATGACTTTCATCA 57.312 34.783 7.80 0.00 38.92 3.07
1580 3281 2.537792 CTTTCTGCTGCATGGTGCCG 62.538 60.000 1.31 0.00 44.23 5.69
1607 3308 6.260936 GCCAAAGATCGATAAGGATGAGAAAA 59.739 38.462 0.00 0.00 0.00 2.29
1611 3312 5.986135 AGATCGATAAGGATGAGAAAAACGG 59.014 40.000 0.00 0.00 0.00 4.44
1614 3315 5.579511 TCGATAAGGATGAGAAAAACGGTTC 59.420 40.000 0.00 0.00 0.00 3.62
1615 3316 5.581085 CGATAAGGATGAGAAAAACGGTTCT 59.419 40.000 0.00 0.00 40.62 3.01
1624 3325 6.546972 GAGAAAAACGGTTCTCTTTCTGAT 57.453 37.500 18.67 1.73 46.71 2.90
1766 3502 3.117131 AGGACCTCTTGTGGGAAAAACAT 60.117 43.478 0.00 0.00 0.00 2.71
1813 3549 0.777446 ACCCCTTTATGTGCCACACT 59.223 50.000 0.00 0.00 35.11 3.55
1840 3576 7.701445 ACATGAAGATGTTTAGCTATTTGAGC 58.299 34.615 0.00 0.00 45.39 4.26
1921 3657 0.463654 GTTGCATATGTCTCCGGCCA 60.464 55.000 2.24 0.00 0.00 5.36
1925 3661 1.432514 CATATGTCTCCGGCCATTCG 58.567 55.000 2.24 0.00 0.00 3.34
2017 4161 3.162666 AGTGAATTCCCGTGTACTGAGA 58.837 45.455 2.27 0.00 0.00 3.27
2047 4191 5.886960 AATCTGTTCTGTCATTTAGGTGC 57.113 39.130 0.00 0.00 0.00 5.01
2048 4192 4.350368 TCTGTTCTGTCATTTAGGTGCA 57.650 40.909 0.00 0.00 0.00 4.57
2065 4211 0.458716 GCAGTACCTCTCCGAGCAAC 60.459 60.000 0.00 0.00 0.00 4.17
2068 4214 1.819903 AGTACCTCTCCGAGCAACTTC 59.180 52.381 0.00 0.00 0.00 3.01
2069 4215 1.544691 GTACCTCTCCGAGCAACTTCA 59.455 52.381 0.00 0.00 0.00 3.02
2079 4225 3.181513 CCGAGCAACTTCATTCATGTCTG 60.182 47.826 0.00 0.00 0.00 3.51
2200 4346 5.539955 AGATGAAGCTAACACCAAACCAAAT 59.460 36.000 0.00 0.00 0.00 2.32
2208 4354 2.632512 ACACCAAACCAAATCCCATCAC 59.367 45.455 0.00 0.00 0.00 3.06
2278 4424 4.150627 CAGTCGAATGTACTGTTGAACTGG 59.849 45.833 4.35 0.00 39.61 4.00
2299 4445 3.013921 GGTGGAAACTTGAAGTGTGTCA 58.986 45.455 0.00 0.00 0.00 3.58
2324 4470 1.133668 AGGGCATGGTCTTTATGGCTC 60.134 52.381 10.64 2.79 46.68 4.70
2330 4476 0.106894 GGTCTTTATGGCTCCCTCGG 59.893 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.690913 TGGACCTACTATAATACTATACGCATT 57.309 33.333 0.00 0.00 0.00 3.56
28 29 9.863650 ATGGACCTACTATAATACTATACGCAT 57.136 33.333 0.00 0.00 0.00 4.73
40 41 9.003658 GCTAAGTACGTTATGGACCTACTATAA 57.996 37.037 0.00 0.00 32.18 0.98
41 42 8.156820 TGCTAAGTACGTTATGGACCTACTATA 58.843 37.037 0.00 0.00 32.18 1.31
42 43 7.000472 TGCTAAGTACGTTATGGACCTACTAT 59.000 38.462 0.00 0.00 32.18 2.12
43 44 6.260936 GTGCTAAGTACGTTATGGACCTACTA 59.739 42.308 0.00 0.00 32.18 1.82
44 45 5.067023 GTGCTAAGTACGTTATGGACCTACT 59.933 44.000 0.00 0.00 33.33 2.57
45 46 5.163622 TGTGCTAAGTACGTTATGGACCTAC 60.164 44.000 0.00 0.00 0.00 3.18
46 47 4.949238 TGTGCTAAGTACGTTATGGACCTA 59.051 41.667 0.00 0.00 0.00 3.08
47 48 3.765511 TGTGCTAAGTACGTTATGGACCT 59.234 43.478 0.00 0.00 0.00 3.85
48 49 4.114058 TGTGCTAAGTACGTTATGGACC 57.886 45.455 0.00 0.00 0.00 4.46
49 50 5.345702 TCATGTGCTAAGTACGTTATGGAC 58.654 41.667 0.00 0.00 0.00 4.02
50 51 5.585820 TCATGTGCTAAGTACGTTATGGA 57.414 39.130 0.00 0.00 0.00 3.41
51 52 5.983118 TGATCATGTGCTAAGTACGTTATGG 59.017 40.000 0.00 0.00 0.00 2.74
52 53 6.697455 AGTGATCATGTGCTAAGTACGTTATG 59.303 38.462 0.00 0.00 0.00 1.90
53 54 6.806751 AGTGATCATGTGCTAAGTACGTTAT 58.193 36.000 0.00 0.00 0.00 1.89
54 55 6.095021 AGAGTGATCATGTGCTAAGTACGTTA 59.905 38.462 0.00 0.00 0.00 3.18
55 56 5.073311 AGTGATCATGTGCTAAGTACGTT 57.927 39.130 0.00 0.00 0.00 3.99
56 57 4.399618 AGAGTGATCATGTGCTAAGTACGT 59.600 41.667 0.00 0.00 0.00 3.57
57 58 4.926244 AGAGTGATCATGTGCTAAGTACG 58.074 43.478 0.00 0.00 0.00 3.67
58 59 6.142818 AGAGAGTGATCATGTGCTAAGTAC 57.857 41.667 0.00 0.00 0.00 2.73
59 60 6.263392 GGTAGAGAGTGATCATGTGCTAAGTA 59.737 42.308 0.00 0.00 0.00 2.24
60 61 5.068460 GGTAGAGAGTGATCATGTGCTAAGT 59.932 44.000 0.00 0.00 0.00 2.24
61 62 5.068329 TGGTAGAGAGTGATCATGTGCTAAG 59.932 44.000 0.00 0.00 0.00 2.18
62 63 4.956075 TGGTAGAGAGTGATCATGTGCTAA 59.044 41.667 0.00 0.00 0.00 3.09
63 64 4.536765 TGGTAGAGAGTGATCATGTGCTA 58.463 43.478 0.00 0.00 0.00 3.49
64 65 3.369175 TGGTAGAGAGTGATCATGTGCT 58.631 45.455 0.00 0.00 0.00 4.40
65 66 3.808466 TGGTAGAGAGTGATCATGTGC 57.192 47.619 0.00 0.00 0.00 4.57
66 67 5.728471 AGTTTGGTAGAGAGTGATCATGTG 58.272 41.667 0.00 0.00 0.00 3.21
67 68 5.481824 TGAGTTTGGTAGAGAGTGATCATGT 59.518 40.000 0.00 0.00 0.00 3.21
68 69 5.970592 TGAGTTTGGTAGAGAGTGATCATG 58.029 41.667 0.00 0.00 0.00 3.07
69 70 6.580788 CATGAGTTTGGTAGAGAGTGATCAT 58.419 40.000 0.00 0.00 0.00 2.45
70 71 5.625426 GCATGAGTTTGGTAGAGAGTGATCA 60.625 44.000 0.00 0.00 0.00 2.92
71 72 4.808364 GCATGAGTTTGGTAGAGAGTGATC 59.192 45.833 0.00 0.00 0.00 2.92
72 73 4.223700 TGCATGAGTTTGGTAGAGAGTGAT 59.776 41.667 0.00 0.00 0.00 3.06
73 74 3.578282 TGCATGAGTTTGGTAGAGAGTGA 59.422 43.478 0.00 0.00 0.00 3.41
74 75 3.930336 TGCATGAGTTTGGTAGAGAGTG 58.070 45.455 0.00 0.00 0.00 3.51
75 76 3.618507 GCTGCATGAGTTTGGTAGAGAGT 60.619 47.826 0.00 0.00 0.00 3.24
76 77 2.935201 GCTGCATGAGTTTGGTAGAGAG 59.065 50.000 0.00 0.00 0.00 3.20
77 78 2.302733 TGCTGCATGAGTTTGGTAGAGA 59.697 45.455 0.00 0.00 0.00 3.10
78 79 2.703416 TGCTGCATGAGTTTGGTAGAG 58.297 47.619 0.00 0.00 0.00 2.43
79 80 2.857186 TGCTGCATGAGTTTGGTAGA 57.143 45.000 0.00 0.00 0.00 2.59
80 81 3.011818 TGATGCTGCATGAGTTTGGTAG 58.988 45.455 21.53 0.00 0.00 3.18
81 82 2.749076 GTGATGCTGCATGAGTTTGGTA 59.251 45.455 21.53 0.00 0.00 3.25
82 83 1.542915 GTGATGCTGCATGAGTTTGGT 59.457 47.619 21.53 0.00 0.00 3.67
83 84 1.816835 AGTGATGCTGCATGAGTTTGG 59.183 47.619 21.53 0.00 0.00 3.28
84 85 3.057806 TGAAGTGATGCTGCATGAGTTTG 60.058 43.478 21.53 0.00 0.00 2.93
85 86 3.057736 GTGAAGTGATGCTGCATGAGTTT 60.058 43.478 21.53 9.07 34.71 2.66
86 87 2.486982 GTGAAGTGATGCTGCATGAGTT 59.513 45.455 21.53 20.51 34.71 3.01
87 88 2.082231 GTGAAGTGATGCTGCATGAGT 58.918 47.619 21.53 12.17 34.71 3.41
88 89 2.357075 AGTGAAGTGATGCTGCATGAG 58.643 47.619 21.53 0.00 34.71 2.90
89 90 2.484742 AGTGAAGTGATGCTGCATGA 57.515 45.000 21.53 9.19 34.71 3.07
90 91 2.747989 AGAAGTGAAGTGATGCTGCATG 59.252 45.455 21.53 0.00 34.71 4.06
91 92 3.069079 AGAAGTGAAGTGATGCTGCAT 57.931 42.857 16.20 16.20 34.71 3.96
92 93 2.556144 AGAAGTGAAGTGATGCTGCA 57.444 45.000 4.13 4.13 0.00 4.41
93 94 3.911661 AAAGAAGTGAAGTGATGCTGC 57.088 42.857 0.00 0.00 0.00 5.25
94 95 4.142730 GGCTAAAGAAGTGAAGTGATGCTG 60.143 45.833 0.00 0.00 0.00 4.41
95 96 4.006319 GGCTAAAGAAGTGAAGTGATGCT 58.994 43.478 0.00 0.00 0.00 3.79
96 97 3.753272 TGGCTAAAGAAGTGAAGTGATGC 59.247 43.478 0.00 0.00 0.00 3.91
97 98 5.645067 TCATGGCTAAAGAAGTGAAGTGATG 59.355 40.000 0.00 0.00 0.00 3.07
98 99 5.809001 TCATGGCTAAAGAAGTGAAGTGAT 58.191 37.500 0.00 0.00 0.00 3.06
99 100 5.227569 TCATGGCTAAAGAAGTGAAGTGA 57.772 39.130 0.00 0.00 0.00 3.41
100 101 5.220548 CGATCATGGCTAAAGAAGTGAAGTG 60.221 44.000 0.00 0.00 0.00 3.16
101 102 4.872691 CGATCATGGCTAAAGAAGTGAAGT 59.127 41.667 0.00 0.00 0.00 3.01
102 103 5.111989 TCGATCATGGCTAAAGAAGTGAAG 58.888 41.667 0.00 0.00 0.00 3.02
103 104 5.084818 TCGATCATGGCTAAAGAAGTGAA 57.915 39.130 0.00 0.00 0.00 3.18
104 105 4.736126 TCGATCATGGCTAAAGAAGTGA 57.264 40.909 0.00 0.00 0.00 3.41
105 106 4.149571 CGATCGATCATGGCTAAAGAAGTG 59.850 45.833 24.40 0.00 0.00 3.16
106 107 4.038042 TCGATCGATCATGGCTAAAGAAGT 59.962 41.667 24.40 0.00 0.00 3.01
107 108 4.550422 TCGATCGATCATGGCTAAAGAAG 58.450 43.478 24.40 4.21 0.00 2.85
108 109 4.584327 TCGATCGATCATGGCTAAAGAA 57.416 40.909 24.40 0.00 0.00 2.52
109 110 4.790765 ATCGATCGATCATGGCTAAAGA 57.209 40.909 24.60 10.69 0.00 2.52
124 125 2.416162 GGTTAGAGGGCATCGATCGATC 60.416 54.545 27.20 20.06 31.62 3.69
125 126 1.546476 GGTTAGAGGGCATCGATCGAT 59.454 52.381 24.60 24.60 34.81 3.59
126 127 0.959553 GGTTAGAGGGCATCGATCGA 59.040 55.000 21.86 21.86 0.00 3.59
127 128 0.038159 GGGTTAGAGGGCATCGATCG 60.038 60.000 9.36 9.36 0.00 3.69
128 129 1.001406 CAGGGTTAGAGGGCATCGATC 59.999 57.143 0.00 0.00 0.00 3.69
129 130 1.051812 CAGGGTTAGAGGGCATCGAT 58.948 55.000 0.00 0.00 0.00 3.59
130 131 0.032515 TCAGGGTTAGAGGGCATCGA 60.033 55.000 0.00 0.00 0.00 3.59
131 132 0.390860 CTCAGGGTTAGAGGGCATCG 59.609 60.000 0.00 0.00 0.00 3.84
132 133 0.107643 GCTCAGGGTTAGAGGGCATC 59.892 60.000 0.00 0.00 33.72 3.91
133 134 0.327000 AGCTCAGGGTTAGAGGGCAT 60.327 55.000 0.00 0.00 33.72 4.40
134 135 0.978146 GAGCTCAGGGTTAGAGGGCA 60.978 60.000 9.40 0.00 33.72 5.36
135 136 0.978146 TGAGCTCAGGGTTAGAGGGC 60.978 60.000 13.74 0.00 33.72 5.19
136 137 0.827368 GTGAGCTCAGGGTTAGAGGG 59.173 60.000 18.89 0.00 33.72 4.30
137 138 0.827368 GGTGAGCTCAGGGTTAGAGG 59.173 60.000 18.89 0.00 33.72 3.69
138 139 0.827368 GGGTGAGCTCAGGGTTAGAG 59.173 60.000 18.89 0.00 36.21 2.43
139 140 0.413832 AGGGTGAGCTCAGGGTTAGA 59.586 55.000 18.89 0.00 0.00 2.10
140 141 0.539051 CAGGGTGAGCTCAGGGTTAG 59.461 60.000 18.89 1.39 0.00 2.34
141 142 1.553690 GCAGGGTGAGCTCAGGGTTA 61.554 60.000 18.89 0.00 0.00 2.85
142 143 2.900106 GCAGGGTGAGCTCAGGGTT 61.900 63.158 18.89 0.00 0.00 4.11
143 144 3.325753 GCAGGGTGAGCTCAGGGT 61.326 66.667 18.89 0.57 0.00 4.34
144 145 4.106925 GGCAGGGTGAGCTCAGGG 62.107 72.222 18.89 8.05 0.00 4.45
149 150 2.362120 GCAATGGCAGGGTGAGCT 60.362 61.111 0.00 0.00 40.72 4.09
162 163 0.035739 ACGTAGGTTGGAACGGCAAT 59.964 50.000 0.00 0.00 43.25 3.56
164 165 1.301087 CACGTAGGTTGGAACGGCA 60.301 57.895 0.00 0.00 43.25 5.69
165 166 0.881600 AACACGTAGGTTGGAACGGC 60.882 55.000 0.00 0.00 43.25 5.68
168 169 2.410939 GAGGAACACGTAGGTTGGAAC 58.589 52.381 0.00 0.00 0.00 3.62
169 170 1.345415 GGAGGAACACGTAGGTTGGAA 59.655 52.381 0.00 0.00 0.00 3.53
170 171 0.971386 GGAGGAACACGTAGGTTGGA 59.029 55.000 0.00 0.00 0.00 3.53
171 172 0.389426 CGGAGGAACACGTAGGTTGG 60.389 60.000 0.00 0.00 0.00 3.77
172 173 0.316204 ACGGAGGAACACGTAGGTTG 59.684 55.000 0.00 0.00 41.87 3.77
173 174 0.316204 CACGGAGGAACACGTAGGTT 59.684 55.000 0.00 0.00 41.77 3.50
174 175 1.530013 CCACGGAGGAACACGTAGGT 61.530 60.000 0.00 0.00 41.77 3.08
179 180 2.738521 CAGCCACGGAGGAACACG 60.739 66.667 0.00 0.00 41.22 4.49
215 216 4.025401 GTTCAACACGGCGCCCTG 62.025 66.667 23.46 22.57 0.00 4.45
236 243 4.582760 TTAGTGGCACTAACGGCG 57.417 55.556 30.85 4.80 35.89 6.46
248 255 7.283127 AGCCATCCACATTAGTTATTGTTAGTG 59.717 37.037 0.00 0.00 0.00 2.74
252 259 5.594317 GGAGCCATCCACATTAGTTATTGTT 59.406 40.000 0.00 0.00 45.87 2.83
271 280 2.019984 CACTTGCTAAATCTGGGAGCC 58.980 52.381 0.00 0.00 35.24 4.70
272 281 2.019984 CCACTTGCTAAATCTGGGAGC 58.980 52.381 0.00 0.00 36.72 4.70
282 291 5.127031 GGAAAGGAAATATGCCACTTGCTAA 59.873 40.000 0.00 0.00 42.00 3.09
295 304 1.559682 AGCGAGGCAGGAAAGGAAATA 59.440 47.619 0.00 0.00 0.00 1.40
296 305 0.329596 AGCGAGGCAGGAAAGGAAAT 59.670 50.000 0.00 0.00 0.00 2.17
308 317 2.613223 GGTTTATATGGAGGAGCGAGGC 60.613 54.545 0.00 0.00 0.00 4.70
310 319 3.056465 GGAGGTTTATATGGAGGAGCGAG 60.056 52.174 0.00 0.00 0.00 5.03
311 320 2.897969 GGAGGTTTATATGGAGGAGCGA 59.102 50.000 0.00 0.00 0.00 4.93
312 321 2.632996 TGGAGGTTTATATGGAGGAGCG 59.367 50.000 0.00 0.00 0.00 5.03
313 322 4.287067 TGATGGAGGTTTATATGGAGGAGC 59.713 45.833 0.00 0.00 0.00 4.70
314 323 6.214208 TGATGATGGAGGTTTATATGGAGGAG 59.786 42.308 0.00 0.00 0.00 3.69
315 324 6.090870 TGATGATGGAGGTTTATATGGAGGA 58.909 40.000 0.00 0.00 0.00 3.71
317 326 7.250032 TCTGATGATGGAGGTTTATATGGAG 57.750 40.000 0.00 0.00 0.00 3.86
318 327 6.296087 GCTCTGATGATGGAGGTTTATATGGA 60.296 42.308 0.00 0.00 0.00 3.41
319 328 5.879223 GCTCTGATGATGGAGGTTTATATGG 59.121 44.000 0.00 0.00 0.00 2.74
321 330 6.499699 TCAGCTCTGATGATGGAGGTTTATAT 59.500 38.462 0.00 0.00 38.08 0.86
327 347 2.040939 CTCAGCTCTGATGATGGAGGT 58.959 52.381 0.00 0.00 39.13 3.85
336 356 3.773667 TGGATTTCAGTCTCAGCTCTGAT 59.226 43.478 3.88 0.00 39.85 2.90
337 357 3.168292 TGGATTTCAGTCTCAGCTCTGA 58.832 45.455 0.00 0.00 38.66 3.27
338 358 3.606595 TGGATTTCAGTCTCAGCTCTG 57.393 47.619 0.00 0.00 0.00 3.35
345 365 7.055667 TGTCCTACATATGGATTTCAGTCTC 57.944 40.000 7.80 0.00 35.87 3.36
351 371 7.934120 ACTTAGCTTGTCCTACATATGGATTTC 59.066 37.037 7.80 0.00 35.87 2.17
352 372 7.806180 ACTTAGCTTGTCCTACATATGGATTT 58.194 34.615 7.80 0.00 35.87 2.17
353 373 7.380423 ACTTAGCTTGTCCTACATATGGATT 57.620 36.000 7.80 0.00 35.87 3.01
354 374 7.220030 CAACTTAGCTTGTCCTACATATGGAT 58.780 38.462 7.80 0.00 35.87 3.41
355 375 6.408092 CCAACTTAGCTTGTCCTACATATGGA 60.408 42.308 7.80 0.00 0.00 3.41
356 376 5.760253 CCAACTTAGCTTGTCCTACATATGG 59.240 44.000 7.80 0.00 0.00 2.74
365 416 6.461640 TCTTTACTACCAACTTAGCTTGTCC 58.538 40.000 0.00 0.00 0.00 4.02
368 419 7.494952 GGGTATCTTTACTACCAACTTAGCTTG 59.505 40.741 0.00 0.00 40.41 4.01
372 423 8.075761 AGTGGGTATCTTTACTACCAACTTAG 57.924 38.462 4.09 0.00 46.86 2.18
377 428 5.263599 TCGAGTGGGTATCTTTACTACCAA 58.736 41.667 2.25 0.00 40.41 3.67
381 432 4.336433 CCGTTCGAGTGGGTATCTTTACTA 59.664 45.833 0.00 0.00 0.00 1.82
382 433 3.129988 CCGTTCGAGTGGGTATCTTTACT 59.870 47.826 0.00 0.00 0.00 2.24
383 434 3.129287 TCCGTTCGAGTGGGTATCTTTAC 59.871 47.826 5.31 0.00 0.00 2.01
384 435 3.129287 GTCCGTTCGAGTGGGTATCTTTA 59.871 47.826 5.31 0.00 0.00 1.85
385 436 2.094338 GTCCGTTCGAGTGGGTATCTTT 60.094 50.000 5.31 0.00 0.00 2.52
388 439 1.065251 GAGTCCGTTCGAGTGGGTATC 59.935 57.143 5.31 0.00 0.00 2.24
389 440 1.101331 GAGTCCGTTCGAGTGGGTAT 58.899 55.000 5.31 0.00 0.00 2.73
391 442 2.623915 CGAGTCCGTTCGAGTGGGT 61.624 63.158 5.31 0.00 43.03 4.51
395 446 2.952245 CACCGAGTCCGTTCGAGT 59.048 61.111 3.21 0.00 43.03 4.18
396 447 2.504244 GCACCGAGTCCGTTCGAG 60.504 66.667 3.21 0.00 43.03 4.04
399 450 4.047059 TCCGCACCGAGTCCGTTC 62.047 66.667 0.00 0.00 0.00 3.95
400 451 4.353437 GTCCGCACCGAGTCCGTT 62.353 66.667 0.00 0.00 0.00 4.44
403 454 4.477975 CTCGTCCGCACCGAGTCC 62.478 72.222 8.13 0.00 45.09 3.85
410 461 4.451150 TCATGGGCTCGTCCGCAC 62.451 66.667 0.00 0.00 34.94 5.34
411 462 4.451150 GTCATGGGCTCGTCCGCA 62.451 66.667 0.00 0.00 34.94 5.69
431 1008 0.250901 CCCATATAGGTGGCACTGGC 60.251 60.000 18.45 0.33 37.96 4.85
432 1009 1.140312 ACCCATATAGGTGGCACTGG 58.860 55.000 18.45 16.02 39.24 4.00
444 1021 9.614792 GTTCAGATACTTTTTAGACACCCATAT 57.385 33.333 0.00 0.00 0.00 1.78
445 1022 8.598916 TGTTCAGATACTTTTTAGACACCCATA 58.401 33.333 0.00 0.00 0.00 2.74
446 1023 7.390718 GTGTTCAGATACTTTTTAGACACCCAT 59.609 37.037 0.00 0.00 0.00 4.00
447 1024 6.708949 GTGTTCAGATACTTTTTAGACACCCA 59.291 38.462 0.00 0.00 0.00 4.51
448 1025 6.708949 TGTGTTCAGATACTTTTTAGACACCC 59.291 38.462 0.00 0.00 0.00 4.61
449 1026 7.441458 AGTGTGTTCAGATACTTTTTAGACACC 59.559 37.037 0.00 0.00 31.32 4.16
450 1027 8.276325 CAGTGTGTTCAGATACTTTTTAGACAC 58.724 37.037 0.00 0.00 0.00 3.67
451 1028 8.201464 TCAGTGTGTTCAGATACTTTTTAGACA 58.799 33.333 0.00 0.00 0.00 3.41
452 1029 8.589335 TCAGTGTGTTCAGATACTTTTTAGAC 57.411 34.615 0.00 0.00 0.00 2.59
453 1030 7.385205 GCTCAGTGTGTTCAGATACTTTTTAGA 59.615 37.037 0.00 0.00 0.00 2.10
454 1031 7.513968 GCTCAGTGTGTTCAGATACTTTTTAG 58.486 38.462 0.00 0.00 0.00 1.85
455 1032 6.145534 CGCTCAGTGTGTTCAGATACTTTTTA 59.854 38.462 0.00 0.00 0.00 1.52
457 1034 4.449068 CGCTCAGTGTGTTCAGATACTTTT 59.551 41.667 0.00 0.00 0.00 2.27
459 1036 3.579709 CGCTCAGTGTGTTCAGATACTT 58.420 45.455 0.00 0.00 0.00 2.24
460 1037 2.672478 GCGCTCAGTGTGTTCAGATACT 60.672 50.000 0.00 0.00 0.00 2.12
461 1038 1.656095 GCGCTCAGTGTGTTCAGATAC 59.344 52.381 0.00 0.00 0.00 2.24
463 1040 0.319728 AGCGCTCAGTGTGTTCAGAT 59.680 50.000 2.64 0.00 0.00 2.90
464 1041 0.104855 AAGCGCTCAGTGTGTTCAGA 59.895 50.000 12.06 0.00 0.00 3.27
465 1042 0.234106 CAAGCGCTCAGTGTGTTCAG 59.766 55.000 12.06 0.00 0.00 3.02
467 1044 1.082496 GCAAGCGCTCAGTGTGTTC 60.082 57.895 12.06 0.00 34.30 3.18
468 1045 2.885676 CGCAAGCGCTCAGTGTGTT 61.886 57.895 12.06 0.00 35.30 3.32
471 1048 2.498291 ATCTCGCAAGCGCTCAGTGT 62.498 55.000 12.06 0.00 39.59 3.55
473 1050 1.808799 CATCTCGCAAGCGCTCAGT 60.809 57.895 12.06 0.00 39.59 3.41
474 1051 1.481019 CTCATCTCGCAAGCGCTCAG 61.481 60.000 12.06 8.10 39.59 3.35
476 1053 2.236382 CCTCATCTCGCAAGCGCTC 61.236 63.158 12.06 0.00 39.59 5.03
477 1054 2.202851 CCTCATCTCGCAAGCGCT 60.203 61.111 2.64 2.64 39.59 5.92
480 1057 0.391661 TTGGTCCTCATCTCGCAAGC 60.392 55.000 0.00 0.00 37.18 4.01
481 1058 2.208431 GATTGGTCCTCATCTCGCAAG 58.792 52.381 0.00 0.00 0.00 4.01
483 1060 1.134699 GTGATTGGTCCTCATCTCGCA 60.135 52.381 0.00 0.00 0.00 5.10
484 1061 1.137872 AGTGATTGGTCCTCATCTCGC 59.862 52.381 0.00 0.00 0.00 5.03
486 1063 3.243569 CGGTAGTGATTGGTCCTCATCTC 60.244 52.174 0.00 0.00 0.00 2.75
487 1064 2.695666 CGGTAGTGATTGGTCCTCATCT 59.304 50.000 0.00 0.00 0.00 2.90
488 1065 2.693591 TCGGTAGTGATTGGTCCTCATC 59.306 50.000 0.00 0.00 0.00 2.92
489 1066 2.747177 TCGGTAGTGATTGGTCCTCAT 58.253 47.619 0.00 0.00 0.00 2.90
490 1067 2.225382 TCGGTAGTGATTGGTCCTCA 57.775 50.000 0.00 0.00 0.00 3.86
498 1791 5.928976 TGATCCATTGATTCGGTAGTGATT 58.071 37.500 0.00 0.00 0.00 2.57
499 1792 5.551305 TGATCCATTGATTCGGTAGTGAT 57.449 39.130 0.00 0.00 0.00 3.06
503 1796 4.386954 CGACATGATCCATTGATTCGGTAG 59.613 45.833 0.00 0.00 0.00 3.18
506 1799 2.096069 GCGACATGATCCATTGATTCGG 60.096 50.000 0.00 0.00 31.36 4.30
509 1802 2.564771 ACGCGACATGATCCATTGATT 58.435 42.857 15.93 0.00 0.00 2.57
513 1806 0.378257 GCAACGCGACATGATCCATT 59.622 50.000 15.93 0.00 0.00 3.16
514 1807 0.744057 TGCAACGCGACATGATCCAT 60.744 50.000 15.93 0.00 0.00 3.41
515 1808 0.744057 ATGCAACGCGACATGATCCA 60.744 50.000 15.93 3.00 0.00 3.41
516 1809 0.316442 CATGCAACGCGACATGATCC 60.316 55.000 26.01 7.66 45.23 3.36
519 1812 2.034317 AGCATGCAACGCGACATGA 61.034 52.632 30.79 12.70 45.23 3.07
520 1813 1.866059 CAGCATGCAACGCGACATG 60.866 57.895 25.90 25.90 45.19 3.21
521 1814 1.576451 TTCAGCATGCAACGCGACAT 61.576 50.000 21.98 10.86 34.76 3.06
522 1815 2.173951 CTTCAGCATGCAACGCGACA 62.174 55.000 21.98 8.61 34.76 4.35
523 1816 1.510623 CTTCAGCATGCAACGCGAC 60.511 57.895 21.98 1.62 34.76 5.19
524 1817 2.862436 CTTCAGCATGCAACGCGA 59.138 55.556 21.98 5.08 34.76 5.87
548 1841 1.968017 TGCCCGCTCTTGCTGAAAG 60.968 57.895 0.00 0.00 36.97 2.62
553 1846 4.626081 AACGTGCCCGCTCTTGCT 62.626 61.111 0.00 0.00 37.70 3.91
554 1847 4.090057 GAACGTGCCCGCTCTTGC 62.090 66.667 0.00 0.00 37.70 4.01
561 1854 1.082117 ATAAAGAGCGAACGTGCCCG 61.082 55.000 0.00 0.00 40.83 6.13
563 1856 4.531659 AATTATAAAGAGCGAACGTGCC 57.468 40.909 0.00 0.00 34.65 5.01
565 1858 5.188194 CGGAAATTATAAAGAGCGAACGTG 58.812 41.667 0.00 0.00 0.00 4.49
567 1860 5.385396 ACGGAAATTATAAAGAGCGAACG 57.615 39.130 0.00 0.00 0.00 3.95
568 1861 8.443898 AAAAACGGAAATTATAAAGAGCGAAC 57.556 30.769 0.00 0.00 0.00 3.95
595 2075 6.166982 GGCATGGTTAAGTATCTATGGAGAC 58.833 44.000 0.00 0.00 33.41 3.36
596 2076 5.843969 TGGCATGGTTAAGTATCTATGGAGA 59.156 40.000 0.00 0.00 35.71 3.71
597 2077 6.114187 TGGCATGGTTAAGTATCTATGGAG 57.886 41.667 0.00 0.00 0.00 3.86
598 2078 6.475504 CATGGCATGGTTAAGTATCTATGGA 58.524 40.000 19.80 0.00 0.00 3.41
599 2079 5.124457 GCATGGCATGGTTAAGTATCTATGG 59.876 44.000 27.48 0.00 0.00 2.74
601 2081 5.256474 GGCATGGCATGGTTAAGTATCTAT 58.744 41.667 27.48 0.00 0.00 1.98
602 2082 4.506625 GGGCATGGCATGGTTAAGTATCTA 60.507 45.833 27.48 0.00 0.00 1.98
603 2083 3.490348 GGCATGGCATGGTTAAGTATCT 58.510 45.455 27.48 0.00 0.00 1.98
604 2084 2.558359 GGGCATGGCATGGTTAAGTATC 59.442 50.000 27.48 8.33 0.00 2.24
606 2086 1.410932 GGGGCATGGCATGGTTAAGTA 60.411 52.381 27.48 0.00 0.00 2.24
607 2087 0.687427 GGGGCATGGCATGGTTAAGT 60.687 55.000 27.48 0.00 0.00 2.24
608 2088 1.737355 CGGGGCATGGCATGGTTAAG 61.737 60.000 27.48 2.65 0.00 1.85
611 2091 2.506884 TAACGGGGCATGGCATGGTT 62.507 55.000 27.48 22.66 0.00 3.67
613 2093 2.123939 TAACGGGGCATGGCATGG 60.124 61.111 27.48 13.93 0.00 3.66
614 2094 1.453745 ACTAACGGGGCATGGCATG 60.454 57.895 22.99 22.99 0.00 4.06
615 2095 1.453745 CACTAACGGGGCATGGCAT 60.454 57.895 22.06 6.47 0.00 4.40
617 2097 2.045340 ACACTAACGGGGCATGGC 60.045 61.111 11.56 11.56 0.00 4.40
618 2098 1.748879 CCACACTAACGGGGCATGG 60.749 63.158 0.00 0.00 0.00 3.66
619 2099 1.748879 CCCACACTAACGGGGCATG 60.749 63.158 0.00 0.00 38.95 4.06
620 2100 2.674754 CCCACACTAACGGGGCAT 59.325 61.111 0.00 0.00 38.95 4.40
624 2104 1.208535 TCTAATGCCCACACTAACGGG 59.791 52.381 0.00 0.00 46.15 5.28
625 2105 2.277084 GTCTAATGCCCACACTAACGG 58.723 52.381 0.00 0.00 0.00 4.44
626 2106 1.924524 CGTCTAATGCCCACACTAACG 59.075 52.381 0.00 0.00 0.00 3.18
628 2108 1.406341 GGCGTCTAATGCCCACACTAA 60.406 52.381 0.00 0.00 44.49 2.24
629 2109 0.177141 GGCGTCTAATGCCCACACTA 59.823 55.000 0.00 0.00 44.49 2.74
637 2117 0.318784 CTACTCCGGGCGTCTAATGC 60.319 60.000 0.00 0.00 0.00 3.56
638 2118 1.030457 ACTACTCCGGGCGTCTAATG 58.970 55.000 0.00 0.00 0.00 1.90
639 2119 2.620585 GTTACTACTCCGGGCGTCTAAT 59.379 50.000 0.00 0.00 0.00 1.73
640 2120 2.017049 GTTACTACTCCGGGCGTCTAA 58.983 52.381 0.00 0.00 0.00 2.10
642 2122 1.034292 GGTTACTACTCCGGGCGTCT 61.034 60.000 0.00 0.00 0.00 4.18
646 2126 0.101939 CGAAGGTTACTACTCCGGGC 59.898 60.000 0.00 0.00 0.00 6.13
647 2127 1.755179 TCGAAGGTTACTACTCCGGG 58.245 55.000 0.00 0.00 0.00 5.73
648 2128 2.292845 GGATCGAAGGTTACTACTCCGG 59.707 54.545 0.00 0.00 0.00 5.14
649 2129 2.947652 TGGATCGAAGGTTACTACTCCG 59.052 50.000 0.00 0.00 0.00 4.63
650 2130 3.243468 GCTGGATCGAAGGTTACTACTCC 60.243 52.174 0.00 0.00 0.00 3.85
651 2131 3.243468 GGCTGGATCGAAGGTTACTACTC 60.243 52.174 0.00 0.00 0.00 2.59
653 2133 2.694109 AGGCTGGATCGAAGGTTACTAC 59.306 50.000 0.00 0.00 0.00 2.73
656 2136 2.693267 AAGGCTGGATCGAAGGTTAC 57.307 50.000 0.00 0.00 0.00 2.50
669 2346 5.279708 CCCACTAGACCAGATATTAAGGCTG 60.280 48.000 0.00 0.00 0.00 4.85
677 2354 9.482175 GAACTATATTCCCACTAGACCAGATAT 57.518 37.037 0.00 0.00 0.00 1.63
679 2356 7.306013 TGAACTATATTCCCACTAGACCAGAT 58.694 38.462 0.00 0.00 0.00 2.90
680 2357 6.679542 TGAACTATATTCCCACTAGACCAGA 58.320 40.000 0.00 0.00 0.00 3.86
681 2358 6.015010 CCTGAACTATATTCCCACTAGACCAG 60.015 46.154 0.00 0.00 0.00 4.00
729 2406 6.211384 AGGTTCATTGGGTATTCTTTTCTTGG 59.789 38.462 0.00 0.00 0.00 3.61
738 2415 4.023193 CGCCATAAGGTTCATTGGGTATTC 60.023 45.833 0.00 0.00 37.19 1.75
739 2416 3.888930 CGCCATAAGGTTCATTGGGTATT 59.111 43.478 0.00 0.00 37.19 1.89
741 2418 2.240160 ACGCCATAAGGTTCATTGGGTA 59.760 45.455 0.00 0.00 37.19 3.69
742 2419 1.005450 ACGCCATAAGGTTCATTGGGT 59.995 47.619 0.00 0.00 37.19 4.51
743 2420 1.405105 CACGCCATAAGGTTCATTGGG 59.595 52.381 0.00 0.00 37.19 4.12
746 2423 6.524101 AATTTACACGCCATAAGGTTCATT 57.476 33.333 0.00 0.00 37.19 2.57
748 2425 5.938710 TGTAATTTACACGCCATAAGGTTCA 59.061 36.000 5.14 0.00 33.28 3.18
749 2426 6.425577 TGTAATTTACACGCCATAAGGTTC 57.574 37.500 5.14 0.00 33.28 3.62
751 2428 6.354130 AGATGTAATTTACACGCCATAAGGT 58.646 36.000 11.31 0.00 42.23 3.50
753 2430 7.693952 ACAAGATGTAATTTACACGCCATAAG 58.306 34.615 11.31 0.76 42.23 1.73
755 2432 7.042321 GCTACAAGATGTAATTTACACGCCATA 60.042 37.037 11.31 2.49 42.23 2.74
788 2467 4.141088 ACAAGGACAATCCATCATGGCTAT 60.141 41.667 0.00 0.00 39.61 2.97
807 2486 6.480320 GCTACTAAGGAACATGTATCCACAAG 59.520 42.308 21.54 17.64 39.55 3.16
809 2488 5.661312 AGCTACTAAGGAACATGTATCCACA 59.339 40.000 21.54 11.97 39.55 4.17
810 2489 5.986135 CAGCTACTAAGGAACATGTATCCAC 59.014 44.000 21.54 4.18 39.55 4.02
811 2490 5.453339 GCAGCTACTAAGGAACATGTATCCA 60.453 44.000 21.54 7.80 39.55 3.41
812 2491 4.991687 GCAGCTACTAAGGAACATGTATCC 59.008 45.833 15.33 15.33 37.22 2.59
813 2492 4.991687 GGCAGCTACTAAGGAACATGTATC 59.008 45.833 0.00 0.00 0.00 2.24
814 2493 4.202367 GGGCAGCTACTAAGGAACATGTAT 60.202 45.833 0.00 0.00 0.00 2.29
815 2494 3.134081 GGGCAGCTACTAAGGAACATGTA 59.866 47.826 0.00 0.00 0.00 2.29
816 2495 2.092914 GGGCAGCTACTAAGGAACATGT 60.093 50.000 0.00 0.00 0.00 3.21
817 2496 2.565841 GGGCAGCTACTAAGGAACATG 58.434 52.381 0.00 0.00 0.00 3.21
818 2497 1.139058 CGGGCAGCTACTAAGGAACAT 59.861 52.381 0.00 0.00 0.00 2.71
819 2498 0.535335 CGGGCAGCTACTAAGGAACA 59.465 55.000 0.00 0.00 0.00 3.18
820 2499 0.535797 ACGGGCAGCTACTAAGGAAC 59.464 55.000 0.00 0.00 0.00 3.62
821 2500 2.029623 CTACGGGCAGCTACTAAGGAA 58.970 52.381 0.00 0.00 0.00 3.36
822 2501 1.213678 TCTACGGGCAGCTACTAAGGA 59.786 52.381 0.00 0.00 0.00 3.36
823 2502 1.337387 GTCTACGGGCAGCTACTAAGG 59.663 57.143 0.00 0.00 0.00 2.69
824 2503 2.022195 TGTCTACGGGCAGCTACTAAG 58.978 52.381 0.00 0.00 0.00 2.18
825 2504 2.022195 CTGTCTACGGGCAGCTACTAA 58.978 52.381 0.00 0.00 0.00 2.24
826 2505 1.676746 CTGTCTACGGGCAGCTACTA 58.323 55.000 0.00 0.00 0.00 1.82
827 2506 1.038130 CCTGTCTACGGGCAGCTACT 61.038 60.000 0.00 0.00 35.28 2.57
868 2551 6.454223 TGCTAAATCTAGGAGCCCAATAAT 57.546 37.500 0.00 0.00 35.24 1.28
890 2574 3.731652 TGAAAGGAAGCAAACCACATG 57.268 42.857 0.00 0.00 0.00 3.21
892 2576 2.364970 CCATGAAAGGAAGCAAACCACA 59.635 45.455 0.00 0.00 0.00 4.17
896 2580 1.344114 TGGCCATGAAAGGAAGCAAAC 59.656 47.619 0.00 0.00 0.00 2.93
898 2582 1.344114 GTTGGCCATGAAAGGAAGCAA 59.656 47.619 6.09 0.00 0.00 3.91
917 2601 3.105283 ACGGAGTTTTATAGGGAGCTGT 58.895 45.455 0.00 0.00 37.78 4.40
958 2642 2.659610 GCGAGGAGGTGTGAGCTT 59.340 61.111 0.00 0.00 0.00 3.74
990 2682 3.627123 CGTGAGCATCCATGGTTTTATCA 59.373 43.478 12.58 8.32 38.85 2.15
1027 2719 1.411977 CAGGTCTAGAGGTGCAGATGG 59.588 57.143 0.00 0.00 0.00 3.51
1030 2722 1.356059 AGACAGGTCTAGAGGTGCAGA 59.644 52.381 0.00 0.00 38.35 4.26
1032 2724 1.356059 AGAGACAGGTCTAGAGGTGCA 59.644 52.381 1.20 0.00 40.61 4.57
1035 2727 3.897239 CATGAGAGACAGGTCTAGAGGT 58.103 50.000 1.20 0.00 40.61 3.85
1055 2747 3.731728 GAGACATGGGGGCCAGCA 61.732 66.667 4.39 0.00 36.75 4.41
1122 2814 5.832539 AAGAAAAGAGTCTTGATCTCCCA 57.167 39.130 17.34 0.00 36.48 4.37
1131 2823 5.062528 CAGAAGAGGCAAGAAAAGAGTCTT 58.937 41.667 0.00 0.00 38.41 3.01
1293 2985 4.112634 CGTTGTCGTCATCATCAAGGTAT 58.887 43.478 0.00 0.00 0.00 2.73
1312 3010 1.600485 CTTTTGGTACTTGCCGTCGTT 59.400 47.619 0.00 0.00 0.00 3.85
1324 3022 5.179452 AGGCTAAGATCAAGCTTTTGGTA 57.821 39.130 16.77 0.00 39.97 3.25
1368 3066 1.227999 GCTGTACGGCACACACATGT 61.228 55.000 21.95 0.00 40.80 3.21
1436 3136 2.086869 TCATTGCAGGAAACTAGCAGC 58.913 47.619 0.00 0.00 42.52 5.25
1477 3177 6.283694 GGACAAGTCATCATGCTCATACTAA 58.716 40.000 2.29 0.00 0.00 2.24
1488 3188 1.925255 ACATGGGGGACAAGTCATCAT 59.075 47.619 0.00 0.40 0.00 2.45
1489 3189 1.371467 ACATGGGGGACAAGTCATCA 58.629 50.000 0.00 0.00 0.00 3.07
1490 3190 3.864789 ATACATGGGGGACAAGTCATC 57.135 47.619 0.00 0.00 32.50 2.92
1555 3256 2.688446 ACCATGCAGCAGAAAGATGATG 59.312 45.455 0.00 0.00 39.57 3.07
1556 3257 2.688446 CACCATGCAGCAGAAAGATGAT 59.312 45.455 0.00 0.00 35.00 2.45
1559 3260 0.815734 GCACCATGCAGCAGAAAGAT 59.184 50.000 0.00 0.00 44.26 2.40
1580 3281 4.380531 TCATCCTTATCGATCTTTGGCAC 58.619 43.478 0.00 0.00 0.00 5.01
1586 3287 6.480320 CCGTTTTTCTCATCCTTATCGATCTT 59.520 38.462 0.00 0.00 0.00 2.40
1607 3308 3.508793 TCCGTATCAGAAAGAGAACCGTT 59.491 43.478 0.00 0.00 0.00 4.44
1611 3312 7.382759 GGATATGTTCCGTATCAGAAAGAGAAC 59.617 40.741 5.97 0.00 34.92 3.01
1709 3445 8.503458 ACAATTCAGAGGAAGATCTTTACATG 57.497 34.615 9.87 7.29 36.25 3.21
1787 3523 1.737793 GCACATAAAGGGGTCAGAACG 59.262 52.381 0.00 0.00 0.00 3.95
1813 3549 8.791327 TCAAATAGCTAAACATCTTCATGTCA 57.209 30.769 0.00 0.00 42.89 3.58
1872 3608 4.272504 TCAGGTGAAAGCTTCGTTTGTTAG 59.727 41.667 0.00 0.00 46.63 2.34
1880 3616 0.449388 GCCATCAGGTGAAAGCTTCG 59.551 55.000 0.00 0.00 46.63 3.79
1908 3644 1.116308 TTCGAATGGCCGGAGACATA 58.884 50.000 5.05 0.00 0.00 2.29
1912 3648 0.461870 CATGTTCGAATGGCCGGAGA 60.462 55.000 5.05 0.00 0.00 3.71
1921 3657 4.696877 TGCTCATTTCTGACATGTTCGAAT 59.303 37.500 0.00 0.00 0.00 3.34
1925 3661 5.093457 CACATGCTCATTTCTGACATGTTC 58.907 41.667 0.00 0.00 43.59 3.18
2000 4144 3.118371 GGGAATCTCAGTACACGGGAATT 60.118 47.826 0.00 0.00 0.00 2.17
2017 4161 9.401058 CTAAATGACAGAACAGATTTAGGGAAT 57.599 33.333 0.00 0.00 31.57 3.01
2065 4211 5.181811 TGTTTGCTACCAGACATGAATGAAG 59.818 40.000 0.00 0.48 31.83 3.02
2068 4214 4.216042 TGTGTTTGCTACCAGACATGAATG 59.784 41.667 0.00 0.00 38.21 2.67
2069 4215 4.397420 TGTGTTTGCTACCAGACATGAAT 58.603 39.130 0.00 0.00 38.21 2.57
2104 4250 5.471797 TGCTCTATTGTTGATCCGAAAACAA 59.528 36.000 10.45 10.45 46.90 2.83
2278 4424 3.013921 TGACACACTTCAAGTTTCCACC 58.986 45.455 0.00 0.00 0.00 4.61
2319 4465 0.914417 AATTCCTTCCGAGGGAGCCA 60.914 55.000 0.00 0.00 43.72 4.75
2324 4470 1.407437 CCAGTCAATTCCTTCCGAGGG 60.407 57.143 0.00 0.00 43.72 4.30
2330 4476 5.869579 TCCTATATGCCAGTCAATTCCTTC 58.130 41.667 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.