AutoCloner

Multiple sequence alignment - TraesCS3D01G007700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G007700	chr3D	100.000	2456	0	0	1	2456	2717295	2719750	0.000000e+00	4536
1	TraesCS3D01G007700	chr3D	79.954	878	77	50	878	1702	2747031	2747862	2.760000e-154	555
2	TraesCS3D01G007700	chr3D	76.699	1030	144	56	745	1711	2753190	2754186	3.670000e-133	484
3	TraesCS3D01G007700	chr3D	87.895	190	18	3	2062	2249	2748802	2748988	4.110000e-53	219
4	TraesCS3D01G007700	chr3D	91.667	120	7	2	1188	1307	2469409	2469293	1.950000e-36	163
5	TraesCS3D01G007700	chr3D	91.379	116	7	2	1188	1303	2533154	2533042	3.270000e-34	156
6	TraesCS3D01G007700	chr3D	88.525	122	14	0	1187	1308	2689084	2689205	5.470000e-32	148
7	TraesCS3D01G007700	chr3D	83.088	136	15	4	375	510	2751550	2751677	1.540000e-22	117
8	TraesCS3D01G007700	chr3B	91.692	1625	101	19	848	2456	3074973	3073367	0.000000e+00	2222
9	TraesCS3D01G007700	chr3B	90.066	302	27	3	27	326	3076274	3075974	2.960000e-104	388
10	TraesCS3D01G007700	chr3B	77.778	720	75	35	1039	1702	3100526	3101216	4.990000e-97	364
11	TraesCS3D01G007700	chr3B	78.747	367	31	17	1990	2330	3082010	3081665	4.140000e-48	202
12	TraesCS3D01G007700	chr3B	97.273	110	3	0	745	854	3075303	3075194	1.160000e-43	187
13	TraesCS3D01G007700	chr3B	97.872	94	2	0	429	522	3075826	3075733	1.950000e-36	163
14	TraesCS3D01G007700	chr3B	88.800	125	14	0	1184	1308	3079379	3079255	1.180000e-33	154
15	TraesCS3D01G007700	chrUn	84.056	715	72	19	1765	2454	63656970	63656273	0.000000e+00	651
16	TraesCS3D01G007700	chrUn	84.056	715	72	20	1765	2454	317286066	317286763	0.000000e+00	651
17	TraesCS3D01G007700	chrUn	78.636	660	71	28	1088	1702	32038578	32037944	8.290000e-100	374
18	TraesCS3D01G007700	chrUn	79.450	545	59	31	10	509	63658933	63658397	1.090000e-88	337
19	TraesCS3D01G007700	chrUn	79.450	545	59	31	10	509	317284103	317284639	1.090000e-88	337
20	TraesCS3D01G007700	chrUn	79.450	545	59	31	10	509	372044028	372044564	1.090000e-88	337
21	TraesCS3D01G007700	chrUn	86.702	188	8	5	744	914	63657859	63657672	2.490000e-45	193
22	TraesCS3D01G007700	chrUn	86.702	188	8	5	744	914	317285177	317285364	2.490000e-45	193
23	TraesCS3D01G007700	chrUn	86.702	188	8	5	744	914	372045102	372045289	2.490000e-45	193
24	TraesCS3D01G007700	chrUn	75.731	342	56	20	1366	1682	63657333	63656994	1.970000e-31	147
25	TraesCS3D01G007700	chrUn	75.652	345	57	20	1363	1682	317285700	317286042	1.970000e-31	147

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G007700	chr3D	2717295	2719750	2455	False	4536.000000	4536	100.000000	1	2456	1	chr3D.!!$F2	2455
1	TraesCS3D01G007700	chr3D	2747031	2754186	7155	False	343.750000	555	81.909000	375	2249	4	chr3D.!!$F3	1874
2	TraesCS3D01G007700	chr3B	3073367	3082010	8643	True	552.666667	2222	90.741667	27	2456	6	chr3B.!!$R1	2429
3	TraesCS3D01G007700	chr3B	3100526	3101216	690	False	364.000000	364	77.778000	1039	1702	1	chr3B.!!$F1	663
4	TraesCS3D01G007700	chrUn	32037944	32038578	634	True	374.000000	374	78.636000	1088	1702	1	chrUn.!!$R1	614
5	TraesCS3D01G007700	chrUn	63656273	63658933	2660	True	332.000000	651	81.484750	10	2454	4	chrUn.!!$R2	2444
6	TraesCS3D01G007700	chrUn	317284103	317286763	2660	False	332.000000	651	81.465000	10	2454	4	chrUn.!!$F1	2444
7	TraesCS3D01G007700	chrUn	372044028	372045289	1261	False	265.000000	337	83.076000	10	914	2	chrUn.!!$F2	904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
449	6280	0.105453	ACCTGACAGACACCTGACCT	60.105	55.0	3.32	0.0	43.02	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2129	9717	0.097674	TAGCGCTAACGTCGAAGGTC	59.902	55.0	16.33	0.0	42.83	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	5766	7.176589	AGTCAAAATGTAAAGTTCAAACCCA	57.823	32.000	0.00	0.00	0.00	4.51
69	5780	7.605449	AGTTCAAACCCATGATATTGTTCAAG	58.395	34.615	0.00	0.00	0.00	3.02
75	5786	4.496341	CCCATGATATTGTTCAAGCGACAC	60.496	45.833	0.00	0.00	0.00	3.67
102	5820	1.202817	TCACACGGCGCATAAAGTAGA	59.797	47.619	10.83	0.19	0.00	2.59
105	5823	2.201732	CACGGCGCATAAAGTAGATGT	58.798	47.619	10.83	0.00	0.00	3.06
107	5825	3.063452	CACGGCGCATAAAGTAGATGTTT	59.937	43.478	10.83	0.00	0.00	2.83
159	5877	1.209621	CAGTATCCCCTTTTCCCCGA	58.790	55.000	0.00	0.00	0.00	5.14
165	5883	3.375647	TCCCCTTTTCCCCGATAAAAG	57.624	47.619	8.84	8.84	41.51	2.27
171	5893	2.122783	TTCCCCGATAAAAGCACCAG	57.877	50.000	0.00	0.00	0.00	4.00
196	5918	9.077885	AGATAACACTGAAGCAAGGAAAATAAA	57.922	29.630	0.00	0.00	0.00	1.40
199	5921	8.962884	AACACTGAAGCAAGGAAAATAAAAAT	57.037	26.923	0.00	0.00	0.00	1.82
223	5945	5.048224	TGAACTTGACTAGTAAACGAGGAGG	60.048	44.000	0.00	0.00	35.54	4.30
326	6073	7.549842	CAGGCATTTCCTCTCTATTCATGATAG	59.450	40.741	0.00	1.21	45.52	2.08
328	6075	8.535335	GGCATTTCCTCTCTATTCATGATAGTA	58.465	37.037	0.00	0.00	39.07	1.82
372	6199	4.207224	CGATGGACTATTTGAACGCACTAG	59.793	45.833	0.00	0.00	0.00	2.57
449	6280	0.105453	ACCTGACAGACACCTGACCT	60.105	55.000	3.32	0.00	43.02	3.85
524	6400	2.655090	TGCCTCTTTTCACCATGTCA	57.345	45.000	0.00	0.00	0.00	3.58
525	6401	2.229792	TGCCTCTTTTCACCATGTCAC	58.770	47.619	0.00	0.00	0.00	3.67
526	6402	2.158623	TGCCTCTTTTCACCATGTCACT	60.159	45.455	0.00	0.00	0.00	3.41
527	6403	2.227388	GCCTCTTTTCACCATGTCACTG	59.773	50.000	0.00	0.00	0.00	3.66
530	6406	5.063204	CCTCTTTTCACCATGTCACTGTAA	58.937	41.667	0.00	0.00	0.00	2.41
595	7146	2.354604	GGAAGTCTTTCTCCTGCCTCAG	60.355	54.545	0.00	0.00	33.68	3.35
596	7147	2.022718	AGTCTTTCTCCTGCCTCAGT	57.977	50.000	0.00	0.00	0.00	3.41
604	7155	2.768527	TCTCCTGCCTCAGTAGAAATGG	59.231	50.000	0.00	0.00	0.00	3.16
696	7320	0.525668	CCGTCGACATGGAGCACTAC	60.526	60.000	17.16	0.00	0.00	2.73
699	7323	0.817654	TCGACATGGAGCACTACTGG	59.182	55.000	0.00	0.00	0.00	4.00
700	7324	0.807667	CGACATGGAGCACTACTGGC	60.808	60.000	0.00	0.00	0.00	4.85
702	7326	1.522355	CATGGAGCACTACTGGCCG	60.522	63.158	0.00	0.00	0.00	6.13
703	7327	2.735772	ATGGAGCACTACTGGCCGG	61.736	63.158	11.02	11.02	0.00	6.13
704	7328	3.075005	GGAGCACTACTGGCCGGA	61.075	66.667	21.41	0.00	0.00	5.14
719	7351	3.244770	TGGCCGGAGAACTGTTAAAGATT	60.245	43.478	5.05	0.00	0.00	2.40
724	7356	5.648092	CCGGAGAACTGTTAAAGATTTCCAT	59.352	40.000	0.00	0.00	0.00	3.41
741	7373	4.264373	TCCATATCCTTTTCCCTTTGGG	57.736	45.455	0.00	0.00	46.11	4.12
770	7967	2.890945	TGAGAACTGATGGTCGACAAGA	59.109	45.455	18.91	0.22	0.00	3.02
880	8307	5.621228	GCTTGCAATAATTAATTCGACTCCG	59.379	40.000	3.39	0.00	37.07	4.63
973	8424	0.325272	GGAAGAAGGTGGAGGTGTCC	59.675	60.000	0.00	0.00	44.24	4.02
1013	8464	0.826715	CCTCGGATGGAAGCTTCTCA	59.173	55.000	25.05	20.39	0.00	3.27
1017	8468	1.316651	GGATGGAAGCTTCTCATGCC	58.683	55.000	25.64	21.67	0.00	4.40
1236	8702	1.004560	CTTCCTCAAGTCGCAGGCA	60.005	57.895	0.00	0.00	0.00	4.75
1352	8823	4.974721	CAACCAGCCGGCCACCTT	62.975	66.667	26.15	6.62	34.57	3.50
1353	8824	4.974721	AACCAGCCGGCCACCTTG	62.975	66.667	26.15	14.83	34.57	3.61
1360	8831	4.308458	CGGCCACCTTGACGTCCA	62.308	66.667	14.12	0.00	0.00	4.02
1361	8832	2.351276	GGCCACCTTGACGTCCAT	59.649	61.111	14.12	0.00	0.00	3.41
1364	8835	2.040544	CCACCTTGACGTCCATGCC	61.041	63.158	14.12	0.00	0.00	4.40
1413	8895	0.105593	CCACTAGCAGGCATGACGAT	59.894	55.000	0.62	0.00	0.00	3.73
1610	9165	2.132762	CTACTCGCGTGTTTGACCTTT	58.867	47.619	19.81	0.00	0.00	3.11
1622	9177	4.803088	TGTTTGACCTTTCTGAATTTTGCG	59.197	37.500	0.00	0.00	0.00	4.85
1636	9194	0.882927	TTTGCGCCGAGTAGCTTTGT	60.883	50.000	4.18	0.00	0.00	2.83
1712	9286	7.144000	CCAAACTGTTACTACGTACTCTCTTT	58.856	38.462	0.00	0.00	0.00	2.52
1754	9328	9.015367	TCAGAGAAATAGATAGTATTTCCGGAG	57.985	37.037	3.34	3.61	42.08	4.63
1763	9337	3.219281	AGTATTTCCGGAGAGAGAGAGC	58.781	50.000	3.34	0.00	0.00	4.09
1961	9537	2.978978	TCTGTTGGTCCAGGAGAAATGA	59.021	45.455	0.00	0.00	33.14	2.57
1977	9553	8.383175	AGGAGAAATGAGGTTCAACATAGTAAA	58.617	33.333	0.00	0.00	0.00	2.01
1982	9558	9.739276	AAATGAGGTTCAACATAGTAAAGATGA	57.261	29.630	0.00	0.00	0.00	2.92
2012	9590	5.616270	TCACTCACTACCAAACTAATGCAA	58.384	37.500	0.00	0.00	0.00	4.08
2020	9598	7.601130	CACTACCAAACTAATGCAACAGTACTA	59.399	37.037	0.00	0.00	0.00	1.82
2144	9732	1.066136	GTTGGACCTTCGACGTTAGC	58.934	55.000	0.00	0.00	0.00	3.09
2147	9735	1.154073	GACCTTCGACGTTAGCGCT	60.154	57.895	17.26	17.26	42.83	5.92
2210	9799	1.338020	GGCATATTTCCTTTCCTGCCG	59.662	52.381	0.00	0.00	39.70	5.69
2227	9819	1.461091	CCGCGCTCCTCCCTATAACA	61.461	60.000	5.56	0.00	0.00	2.41
2291	9883	6.166982	GCTAGAGGGTGAAATCCATATGTAC	58.833	44.000	1.24	0.00	0.00	2.90
2326	9918	3.984090	TGGTAGGTATGCAAATATCCCCA	59.016	43.478	0.00	0.00	0.00	4.96
2387	9983	0.313043	GCAAATCCCATCAGGCATCG	59.687	55.000	0.00	0.00	34.51	3.84
2408	10004	6.954487	TCGCCTATATGAGTGTCTAAAGAA	57.046	37.500	0.00	0.00	0.00	2.52
2413	10009	9.509855	GCCTATATGAGTGTCTAAAGAATATCG	57.490	37.037	0.00	0.00	0.00	2.92
2435	10031	0.944386	ACAAATTGAGTCGCGCTTGT	59.056	45.000	5.56	3.43	0.00	3.16
2445	10041	2.892425	GCGCTTGTGAGATCGGGG	60.892	66.667	0.00	0.00	0.00	5.73
2452	10048	3.838271	TGAGATCGGGGCGAGCAC	61.838	66.667	0.00	0.00	45.07	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	6.700081	GGGTTTGAACTTTACATTTTGACTCC	59.300	38.462	0.00	0.00	0.00	3.85
55	5766	4.520743	CGTGTCGCTTGAACAATATCAT	57.479	40.909	0.00	0.00	0.00	2.45
78	5789	0.793861	TTTATGCGCCGTGTGAGAAC	59.206	50.000	4.18	0.00	0.00	3.01
137	5855	2.144450	GGGGAAAAGGGGATACTGGAT	58.856	52.381	0.00	0.00	0.00	3.41
159	5877	6.127897	GCTTCAGTGTTATCTGGTGCTTTTAT	60.128	38.462	0.00	0.00	36.25	1.40
165	5883	2.426522	TGCTTCAGTGTTATCTGGTGC	58.573	47.619	0.00	0.00	36.25	5.01
171	5893	9.691362	TTTTATTTTCCTTGCTTCAGTGTTATC	57.309	29.630	0.00	0.00	0.00	1.75
196	5918	7.439381	TCCTCGTTTACTAGTCAAGTTCATTT	58.561	34.615	0.00	0.00	39.80	2.32
199	5921	5.048224	CCTCCTCGTTTACTAGTCAAGTTCA	60.048	44.000	0.00	0.00	39.80	3.18
212	5934	4.158025	GTCTCATCAGTTCCTCCTCGTTTA	59.842	45.833	0.00	0.00	0.00	2.01
223	5945	6.127591	TGGTTTCTAGCTAGTCTCATCAGTTC	60.128	42.308	20.10	1.05	0.00	3.01
326	6073	5.557388	GCCACGATTAGCAAAACTAGTTAC	58.443	41.667	8.92	1.82	30.79	2.50
328	6075	3.124636	CGCCACGATTAGCAAAACTAGTT	59.875	43.478	1.12	1.12	30.79	2.24
372	6199	0.321122	CTGTGCTCCAGGAAGACACC	60.321	60.000	12.34	0.00	37.54	4.16
392	6223	5.293079	GCAAGACAGTTCAATAGTCCATCTC	59.707	44.000	0.00	0.00	32.82	2.75
393	6224	5.181748	GCAAGACAGTTCAATAGTCCATCT	58.818	41.667	0.00	0.00	32.82	2.90
524	6400	4.486090	CAGACTTACATGCGACTTACAGT	58.514	43.478	0.00	0.00	0.00	3.55
525	6401	3.859961	CCAGACTTACATGCGACTTACAG	59.140	47.826	0.00	0.00	0.00	2.74
526	6402	3.845178	CCAGACTTACATGCGACTTACA	58.155	45.455	0.00	0.00	0.00	2.41
527	6403	2.603560	GCCAGACTTACATGCGACTTAC	59.396	50.000	0.00	0.00	0.00	2.34
530	6406	0.898320	AGCCAGACTTACATGCGACT	59.102	50.000	0.00	0.00	0.00	4.18
595	7146	9.581099	TGAAAAGAAACAAACTTCCATTTCTAC	57.419	29.630	0.00	0.00	39.81	2.59
604	7155	8.935844	AGGTTTTGATGAAAAGAAACAAACTTC	58.064	29.630	0.00	0.00	34.54	3.01
667	7291	0.880278	ATGTCGACGGCCATATGCAC	60.880	55.000	11.62	0.00	43.89	4.57
696	7320	2.076863	CTTTAACAGTTCTCCGGCCAG	58.923	52.381	2.24	0.00	0.00	4.85
699	7323	4.142665	GGAAATCTTTAACAGTTCTCCGGC	60.143	45.833	0.00	0.00	0.00	6.13
700	7324	5.001232	TGGAAATCTTTAACAGTTCTCCGG	58.999	41.667	0.00	0.00	0.00	5.14
702	7326	8.841300	GGATATGGAAATCTTTAACAGTTCTCC	58.159	37.037	0.00	0.00	0.00	3.71
703	7327	9.620259	AGGATATGGAAATCTTTAACAGTTCTC	57.380	33.333	0.00	0.00	0.00	2.87
704	7328	9.981460	AAGGATATGGAAATCTTTAACAGTTCT	57.019	29.630	0.00	0.00	0.00	3.01
741	7373	2.228059	CCATCAGTTCTCATCATGCCC	58.772	52.381	0.00	0.00	0.00	5.36
770	7967	4.910458	AGTGGCTTTGGTAGTAGTGATT	57.090	40.909	0.00	0.00	0.00	2.57
1351	8822	2.358125	CGGTGGCATGGACGTCAA	60.358	61.111	18.91	6.46	0.00	3.18
1352	8823	4.386951	CCGGTGGCATGGACGTCA	62.387	66.667	18.91	3.91	0.00	4.35
1353	8824	4.388499	ACCGGTGGCATGGACGTC	62.388	66.667	6.12	7.13	0.00	4.34
1354	8825	4.697756	CACCGGTGGCATGGACGT	62.698	66.667	27.57	0.00	0.00	4.34
1355	8826	4.386951	TCACCGGTGGCATGGACG	62.387	66.667	33.40	5.52	0.00	4.79
1356	8827	2.746277	GTCACCGGTGGCATGGAC	60.746	66.667	33.65	19.40	34.82	4.02
1357	8828	4.028490	GGTCACCGGTGGCATGGA	62.028	66.667	37.86	14.56	36.81	3.41
1406	8888	0.179127	CTGCTCGTGGTCATCGTCAT	60.179	55.000	0.00	0.00	0.00	3.06
1413	8895	3.871248	CTGCTGCTGCTCGTGGTCA	62.871	63.158	17.00	0.00	40.48	4.02
1529	9069	2.352651	CCACAGATACTTGAATGCACGG	59.647	50.000	0.00	0.00	0.00	4.94
1598	9146	5.276348	CGCAAAATTCAGAAAGGTCAAACAC	60.276	40.000	0.00	0.00	0.00	3.32
1610	9165	1.999735	CTACTCGGCGCAAAATTCAGA	59.000	47.619	10.83	0.00	0.00	3.27
1622	9177	3.749609	TCCTTTTTACAAAGCTACTCGGC	59.250	43.478	0.00	0.00	38.53	5.54
1636	9194	6.167685	TGCGTTATTGAGCTACTCCTTTTTA	58.832	36.000	0.00	0.00	0.00	1.52
1712	9286	8.908786	ATTTCTCTGACAAGTATTTCTGAACA	57.091	30.769	0.00	0.00	0.00	3.18
1754	9328	4.023193	GGCTACAAGATAGTGCTCTCTCTC	60.023	50.000	4.39	0.00	0.00	3.20
1822	9397	2.353803	CCTAGCTAACGACCATATGGGC	60.354	54.545	25.55	22.35	42.05	5.36
1862	9438	2.102252	GACACTTGCTAGATCTGGGAGG	59.898	54.545	5.18	6.85	0.00	4.30
1977	9553	9.739276	TTTGGTAGTGAGTGAAAAATATCATCT	57.261	29.630	0.00	0.00	0.00	2.90
2012	9590	3.762823	GGCTACAGAAGTGGTAGTACTGT	59.237	47.826	5.39	0.00	42.94	3.55
2020	9598	2.159043	CGATCATGGCTACAGAAGTGGT	60.159	50.000	0.00	0.00	0.00	4.16
2121	9709	0.529119	ACGTCGAAGGTCCAACACAC	60.529	55.000	0.00	0.00	0.00	3.82
2125	9713	1.066136	GCTAACGTCGAAGGTCCAAC	58.934	55.000	0.00	0.00	0.00	3.77
2126	9714	0.387622	CGCTAACGTCGAAGGTCCAA	60.388	55.000	0.00	0.00	33.53	3.53
2127	9715	1.210931	CGCTAACGTCGAAGGTCCA	59.789	57.895	0.00	0.00	33.53	4.02
2128	9716	2.157073	GCGCTAACGTCGAAGGTCC	61.157	63.158	0.00	0.00	42.83	4.46
2129	9717	0.097674	TAGCGCTAACGTCGAAGGTC	59.902	55.000	16.33	0.00	42.83	3.85
2130	9718	0.179179	GTAGCGCTAACGTCGAAGGT	60.179	55.000	20.73	0.00	42.83	3.50
2131	9719	0.098376	AGTAGCGCTAACGTCGAAGG	59.902	55.000	20.73	0.00	42.83	3.46
2132	9720	1.454722	GAGTAGCGCTAACGTCGAAG	58.545	55.000	20.73	0.00	42.83	3.79
2176	9764	5.008613	GGAAATATGCCACTTGCTAAATCGA	59.991	40.000	0.00	0.00	42.00	3.59
2177	9765	5.009010	AGGAAATATGCCACTTGCTAAATCG	59.991	40.000	0.00	0.00	42.00	3.34
2210	9799	1.066787	GGATGTTATAGGGAGGAGCGC	60.067	57.143	0.00	0.00	0.00	5.92
2227	9819	3.578978	AGTCTGAGCTCTGATGATGGAT	58.421	45.455	23.99	4.69	0.00	3.41
2258	9850	2.388735	TCACCCTCTAGCCTACACATG	58.611	52.381	0.00	0.00	0.00	3.21
2291	9883	1.338200	ACCTACCAGCTTTGCTTCTCG	60.338	52.381	0.00	0.00	36.40	4.04
2326	9918	4.560108	GCGGGTATCTTTACATACCGACAT	60.560	45.833	0.00	0.00	46.73	3.06
2387	9983	9.509855	CGATATTCTTTAGACACTCATATAGGC	57.490	37.037	0.00	0.00	0.00	3.93
2408	10004	4.782195	GCGCGACTCAATTTGTTTCGATAT	60.782	41.667	12.10	0.00	0.00	1.63
2413	10009	2.316119	AGCGCGACTCAATTTGTTTC	57.684	45.000	12.10	0.00	0.00	2.78
2435	10031	3.838271	GTGCTCGCCCCGATCTCA	61.838	66.667	0.00	0.00	34.61	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.