Multiple sequence alignment - TraesCS3D01G007100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G007100 chr3D 100.000 2423 0 0 1 2423 2463258 2460836 0.000000e+00 4475.0
1 TraesCS3D01G007100 chr3D 82.061 825 78 39 832 1630 2526395 2525615 7.300000e-180 640.0
2 TraesCS3D01G007100 chr3D 92.333 300 21 2 300 598 2530818 2530520 2.230000e-115 425.0
3 TraesCS3D01G007100 chr3D 76.102 703 105 38 820 1495 2469752 2469086 2.340000e-80 309.0
4 TraesCS3D01G007100 chr3D 95.570 158 4 2 649 806 2530525 2530371 1.440000e-62 250.0
5 TraesCS3D01G007100 chr3D 78.231 147 14 12 1978 2117 2519594 2519459 7.180000e-11 78.7
6 TraesCS3D01G007100 chr3A 87.904 835 59 18 826 1630 1593048 1593870 0.000000e+00 944.0
7 TraesCS3D01G007100 chr3A 89.306 533 34 8 279 802 1572427 1572945 0.000000e+00 647.0
8 TraesCS3D01G007100 chr3A 82.380 664 59 17 1769 2423 1594274 1594888 2.130000e-145 525.0
9 TraesCS3D01G007100 chr3A 84.771 545 46 14 1050 1583 1574635 1575153 1.660000e-141 512.0
10 TraesCS3D01G007100 chr3A 92.417 211 9 3 592 801 1590643 1590847 6.550000e-76 294.0
11 TraesCS3D01G007100 chr3A 77.617 554 74 34 992 1513 1514213 1514748 8.470000e-75 291.0
12 TraesCS3D01G007100 chr3A 86.667 105 5 2 1050 1154 1574541 1574636 9.160000e-20 108.0
13 TraesCS3D01G007100 chr3A 88.608 79 8 1 518 595 1587524 1587602 7.130000e-16 95.3
14 TraesCS3D01G007100 chr3A 100.000 29 0 0 1828 1856 1579296 1579324 1.000000e-03 54.7
15 TraesCS3D01G007100 chrUn 90.297 639 41 8 826 1449 32261993 32262625 0.000000e+00 817.0
16 TraesCS3D01G007100 chrUn 87.482 679 55 9 814 1485 34183664 34184319 0.000000e+00 756.0
17 TraesCS3D01G007100 chrUn 87.538 666 43 11 818 1475 307093316 307093949 0.000000e+00 734.0
18 TraesCS3D01G007100 chrUn 89.805 461 38 5 344 801 427074995 427075449 1.250000e-162 582.0
19 TraesCS3D01G007100 chrUn 91.484 411 26 7 282 690 34174350 34174753 7.570000e-155 556.0
20 TraesCS3D01G007100 chrUn 87.791 344 26 8 254 595 32259408 32259737 2.920000e-104 388.0
21 TraesCS3D01G007100 chrUn 84.069 408 32 11 2028 2423 307094618 307095004 1.770000e-96 363.0
22 TraesCS3D01G007100 chrUn 90.476 231 19 1 1784 2014 477972078 477971851 3.920000e-78 302.0
23 TraesCS3D01G007100 chrUn 95.570 158 4 2 649 806 32259735 32259889 1.440000e-62 250.0
24 TraesCS3D01G007100 chrUn 82.824 262 39 4 1136 1394 34497725 34497467 1.870000e-56 230.0
25 TraesCS3D01G007100 chrUn 93.750 80 3 2 689 768 34183307 34183384 4.230000e-23 119.0
26 TraesCS3D01G007100 chrUn 89.157 83 9 0 1774 1856 307094523 307094605 1.180000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G007100 chr3D 2460836 2463258 2422 True 4475.000000 4475 100.000000 1 2423 1 chr3D.!!$R1 2422
1 TraesCS3D01G007100 chr3D 2525615 2530818 5203 True 438.333333 640 89.988000 300 1630 3 chr3D.!!$R4 1330
2 TraesCS3D01G007100 chr3D 2469086 2469752 666 True 309.000000 309 76.102000 820 1495 1 chr3D.!!$R2 675
3 TraesCS3D01G007100 chr3A 1587524 1594888 7364 False 464.575000 944 87.827250 518 2423 4 chr3A.!!$F4 1905
4 TraesCS3D01G007100 chr3A 1572427 1575153 2726 False 422.333333 647 86.914667 279 1583 3 chr3A.!!$F3 1304
5 TraesCS3D01G007100 chr3A 1514213 1514748 535 False 291.000000 291 77.617000 992 1513 1 chr3A.!!$F1 521
6 TraesCS3D01G007100 chrUn 32259408 32262625 3217 False 485.000000 817 91.219333 254 1449 3 chrUn.!!$F3 1195
7 TraesCS3D01G007100 chrUn 34183307 34184319 1012 False 437.500000 756 90.616000 689 1485 2 chrUn.!!$F4 796
8 TraesCS3D01G007100 chrUn 307093316 307095004 1688 False 400.333333 734 86.921333 818 2423 3 chrUn.!!$F5 1605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.02877 TTGTAGCAAAGCACGTGCAC 59.971 50.0 39.21 27.42 44.74 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 9967 0.034476 CTGCAGCTGAGACAACCTGA 59.966 55.0 20.43 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.866508 TGACCTACTATAATCGCCCAAG 57.133 45.455 0.00 0.00 0.00 3.61
22 23 4.476297 TGACCTACTATAATCGCCCAAGA 58.524 43.478 0.00 0.00 0.00 3.02
23 24 5.084519 TGACCTACTATAATCGCCCAAGAT 58.915 41.667 0.00 0.00 0.00 2.40
24 25 5.542635 TGACCTACTATAATCGCCCAAGATT 59.457 40.000 0.00 0.00 42.77 2.40
25 26 6.038997 ACCTACTATAATCGCCCAAGATTC 57.961 41.667 0.00 0.00 40.83 2.52
26 27 5.780793 ACCTACTATAATCGCCCAAGATTCT 59.219 40.000 0.00 0.00 40.83 2.40
27 28 6.071278 ACCTACTATAATCGCCCAAGATTCTC 60.071 42.308 0.00 0.00 40.83 2.87
28 29 5.153950 ACTATAATCGCCCAAGATTCTCC 57.846 43.478 0.00 0.00 40.83 3.71
29 30 4.593206 ACTATAATCGCCCAAGATTCTCCA 59.407 41.667 0.00 0.00 40.83 3.86
30 31 2.806945 AATCGCCCAAGATTCTCCAA 57.193 45.000 0.00 0.00 36.17 3.53
31 32 2.044123 ATCGCCCAAGATTCTCCAAC 57.956 50.000 0.00 0.00 0.00 3.77
32 33 0.690192 TCGCCCAAGATTCTCCAACA 59.310 50.000 0.00 0.00 0.00 3.33
33 34 1.073125 TCGCCCAAGATTCTCCAACAA 59.927 47.619 0.00 0.00 0.00 2.83
34 35 1.200020 CGCCCAAGATTCTCCAACAAC 59.800 52.381 0.00 0.00 0.00 3.32
35 36 2.519013 GCCCAAGATTCTCCAACAACT 58.481 47.619 0.00 0.00 0.00 3.16
36 37 3.686016 GCCCAAGATTCTCCAACAACTA 58.314 45.455 0.00 0.00 0.00 2.24
37 38 3.440522 GCCCAAGATTCTCCAACAACTAC 59.559 47.826 0.00 0.00 0.00 2.73
38 39 4.651778 CCCAAGATTCTCCAACAACTACA 58.348 43.478 0.00 0.00 0.00 2.74
39 40 4.697352 CCCAAGATTCTCCAACAACTACAG 59.303 45.833 0.00 0.00 0.00 2.74
40 41 4.154918 CCAAGATTCTCCAACAACTACAGC 59.845 45.833 0.00 0.00 0.00 4.40
41 42 4.623932 AGATTCTCCAACAACTACAGCA 57.376 40.909 0.00 0.00 0.00 4.41
42 43 4.319177 AGATTCTCCAACAACTACAGCAC 58.681 43.478 0.00 0.00 0.00 4.40
43 44 2.148916 TCTCCAACAACTACAGCACG 57.851 50.000 0.00 0.00 0.00 5.34
44 45 1.684450 TCTCCAACAACTACAGCACGA 59.316 47.619 0.00 0.00 0.00 4.35
45 46 2.299013 TCTCCAACAACTACAGCACGAT 59.701 45.455 0.00 0.00 0.00 3.73
46 47 2.668457 CTCCAACAACTACAGCACGATC 59.332 50.000 0.00 0.00 0.00 3.69
47 48 1.390123 CCAACAACTACAGCACGATCG 59.610 52.381 14.88 14.88 0.00 3.69
48 49 2.058798 CAACAACTACAGCACGATCGT 58.941 47.619 16.60 16.60 0.00 3.73
49 50 2.433868 ACAACTACAGCACGATCGTT 57.566 45.000 20.14 6.72 0.00 3.85
50 51 2.325761 ACAACTACAGCACGATCGTTC 58.674 47.619 20.14 14.83 0.00 3.95
64 65 5.311016 CGATCGTTCGTTATACATTTGCT 57.689 39.130 7.03 0.00 40.53 3.91
65 66 5.355490 CGATCGTTCGTTATACATTTGCTC 58.645 41.667 7.03 0.00 40.53 4.26
66 67 5.609696 CGATCGTTCGTTATACATTTGCTCC 60.610 44.000 7.03 0.00 40.53 4.70
67 68 4.751060 TCGTTCGTTATACATTTGCTCCT 58.249 39.130 0.00 0.00 0.00 3.69
68 69 4.802039 TCGTTCGTTATACATTTGCTCCTC 59.198 41.667 0.00 0.00 0.00 3.71
69 70 4.804139 CGTTCGTTATACATTTGCTCCTCT 59.196 41.667 0.00 0.00 0.00 3.69
70 71 5.291128 CGTTCGTTATACATTTGCTCCTCTT 59.709 40.000 0.00 0.00 0.00 2.85
71 72 6.183360 CGTTCGTTATACATTTGCTCCTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
72 73 7.527457 GTTCGTTATACATTTGCTCCTCTTTT 58.473 34.615 0.00 0.00 0.00 2.27
73 74 8.662141 GTTCGTTATACATTTGCTCCTCTTTTA 58.338 33.333 0.00 0.00 0.00 1.52
74 75 8.780846 TCGTTATACATTTGCTCCTCTTTTAA 57.219 30.769 0.00 0.00 0.00 1.52
75 76 8.879759 TCGTTATACATTTGCTCCTCTTTTAAG 58.120 33.333 0.00 0.00 0.00 1.85
76 77 7.640240 CGTTATACATTTGCTCCTCTTTTAAGC 59.360 37.037 0.00 0.00 36.56 3.09
77 78 4.790765 ACATTTGCTCCTCTTTTAAGCC 57.209 40.909 0.00 0.00 35.12 4.35
78 79 4.151883 ACATTTGCTCCTCTTTTAAGCCA 58.848 39.130 0.00 0.00 35.12 4.75
79 80 4.774200 ACATTTGCTCCTCTTTTAAGCCAT 59.226 37.500 0.00 0.00 35.12 4.40
80 81 5.105595 ACATTTGCTCCTCTTTTAAGCCATC 60.106 40.000 0.00 0.00 35.12 3.51
81 82 3.719268 TGCTCCTCTTTTAAGCCATCA 57.281 42.857 0.00 0.00 35.12 3.07
82 83 4.032960 TGCTCCTCTTTTAAGCCATCAA 57.967 40.909 0.00 0.00 35.12 2.57
83 84 4.603131 TGCTCCTCTTTTAAGCCATCAAT 58.397 39.130 0.00 0.00 35.12 2.57
84 85 5.754782 TGCTCCTCTTTTAAGCCATCAATA 58.245 37.500 0.00 0.00 35.12 1.90
85 86 5.824624 TGCTCCTCTTTTAAGCCATCAATAG 59.175 40.000 0.00 0.00 35.12 1.73
86 87 5.278218 GCTCCTCTTTTAAGCCATCAATAGC 60.278 44.000 0.00 0.00 0.00 2.97
87 88 4.816385 TCCTCTTTTAAGCCATCAATAGCG 59.184 41.667 0.00 0.00 0.00 4.26
88 89 4.576463 CCTCTTTTAAGCCATCAATAGCGT 59.424 41.667 0.00 0.00 0.00 5.07
89 90 5.758296 CCTCTTTTAAGCCATCAATAGCGTA 59.242 40.000 0.00 0.00 0.00 4.42
90 91 6.260050 CCTCTTTTAAGCCATCAATAGCGTAA 59.740 38.462 0.00 0.00 32.34 3.18
91 92 7.011828 TCTTTTAAGCCATCAATAGCGTAAC 57.988 36.000 0.00 0.00 33.63 2.50
92 93 6.596106 TCTTTTAAGCCATCAATAGCGTAACA 59.404 34.615 0.00 0.00 33.63 2.41
93 94 5.984233 TTAAGCCATCAATAGCGTAACAG 57.016 39.130 0.00 0.00 29.81 3.16
94 95 2.213499 AGCCATCAATAGCGTAACAGC 58.787 47.619 0.00 0.00 37.41 4.40
95 96 1.264288 GCCATCAATAGCGTAACAGCC 59.736 52.381 0.00 0.00 38.01 4.85
96 97 1.873591 CCATCAATAGCGTAACAGCCC 59.126 52.381 0.00 0.00 38.01 5.19
97 98 1.873591 CATCAATAGCGTAACAGCCCC 59.126 52.381 0.00 0.00 38.01 5.80
98 99 0.906066 TCAATAGCGTAACAGCCCCA 59.094 50.000 0.00 0.00 38.01 4.96
99 100 1.279558 TCAATAGCGTAACAGCCCCAA 59.720 47.619 0.00 0.00 38.01 4.12
100 101 1.670811 CAATAGCGTAACAGCCCCAAG 59.329 52.381 0.00 0.00 38.01 3.61
101 102 1.200519 ATAGCGTAACAGCCCCAAGA 58.799 50.000 0.00 0.00 38.01 3.02
102 103 1.200519 TAGCGTAACAGCCCCAAGAT 58.799 50.000 0.00 0.00 38.01 2.40
103 104 1.200519 AGCGTAACAGCCCCAAGATA 58.799 50.000 0.00 0.00 38.01 1.98
104 105 1.134491 AGCGTAACAGCCCCAAGATAC 60.134 52.381 0.00 0.00 38.01 2.24
105 106 1.949465 CGTAACAGCCCCAAGATACC 58.051 55.000 0.00 0.00 0.00 2.73
106 107 1.208535 CGTAACAGCCCCAAGATACCA 59.791 52.381 0.00 0.00 0.00 3.25
107 108 2.355310 CGTAACAGCCCCAAGATACCAA 60.355 50.000 0.00 0.00 0.00 3.67
108 109 2.990740 AACAGCCCCAAGATACCAAA 57.009 45.000 0.00 0.00 0.00 3.28
109 110 2.514458 ACAGCCCCAAGATACCAAAG 57.486 50.000 0.00 0.00 0.00 2.77
110 111 1.992557 ACAGCCCCAAGATACCAAAGA 59.007 47.619 0.00 0.00 0.00 2.52
111 112 2.582636 ACAGCCCCAAGATACCAAAGAT 59.417 45.455 0.00 0.00 0.00 2.40
112 113 3.217626 CAGCCCCAAGATACCAAAGATC 58.782 50.000 0.00 0.00 0.00 2.75
113 114 3.117738 CAGCCCCAAGATACCAAAGATCT 60.118 47.826 0.00 0.00 35.08 2.75
114 115 3.137360 AGCCCCAAGATACCAAAGATCTC 59.863 47.826 0.00 0.00 32.33 2.75
115 116 3.748989 GCCCCAAGATACCAAAGATCTCC 60.749 52.174 0.00 0.00 32.33 3.71
116 117 3.718956 CCCCAAGATACCAAAGATCTCCT 59.281 47.826 0.00 0.00 32.33 3.69
117 118 4.907875 CCCCAAGATACCAAAGATCTCCTA 59.092 45.833 0.00 0.00 32.33 2.94
118 119 5.369699 CCCCAAGATACCAAAGATCTCCTAA 59.630 44.000 0.00 0.00 32.33 2.69
119 120 6.465035 CCCCAAGATACCAAAGATCTCCTAAG 60.465 46.154 0.00 0.00 32.33 2.18
120 121 6.100424 CCCAAGATACCAAAGATCTCCTAAGT 59.900 42.308 0.00 0.00 32.33 2.24
121 122 7.213678 CCAAGATACCAAAGATCTCCTAAGTC 58.786 42.308 0.00 0.00 32.33 3.01
122 123 6.642707 AGATACCAAAGATCTCCTAAGTCG 57.357 41.667 0.00 0.00 0.00 4.18
123 124 6.366340 AGATACCAAAGATCTCCTAAGTCGA 58.634 40.000 0.00 0.00 0.00 4.20
124 125 7.007723 AGATACCAAAGATCTCCTAAGTCGAT 58.992 38.462 0.00 0.00 0.00 3.59
125 126 5.269505 ACCAAAGATCTCCTAAGTCGATG 57.730 43.478 0.00 0.00 0.00 3.84
126 127 4.100189 ACCAAAGATCTCCTAAGTCGATGG 59.900 45.833 0.00 0.00 0.00 3.51
127 128 4.100189 CCAAAGATCTCCTAAGTCGATGGT 59.900 45.833 0.00 0.00 0.00 3.55
128 129 5.285651 CAAAGATCTCCTAAGTCGATGGTC 58.714 45.833 0.00 0.00 0.00 4.02
129 130 4.447138 AGATCTCCTAAGTCGATGGTCT 57.553 45.455 0.00 0.00 0.00 3.85
130 131 5.570205 AGATCTCCTAAGTCGATGGTCTA 57.430 43.478 0.00 0.00 0.00 2.59
131 132 5.942961 AGATCTCCTAAGTCGATGGTCTAA 58.057 41.667 0.00 0.00 0.00 2.10
132 133 5.766174 AGATCTCCTAAGTCGATGGTCTAAC 59.234 44.000 0.00 0.00 0.00 2.34
133 134 5.113446 TCTCCTAAGTCGATGGTCTAACT 57.887 43.478 0.00 0.00 0.00 2.24
134 135 5.124645 TCTCCTAAGTCGATGGTCTAACTC 58.875 45.833 0.00 0.00 0.00 3.01
135 136 4.205587 TCCTAAGTCGATGGTCTAACTCC 58.794 47.826 0.00 0.00 0.00 3.85
136 137 4.079901 TCCTAAGTCGATGGTCTAACTCCT 60.080 45.833 0.00 0.00 0.00 3.69
137 138 4.645588 CCTAAGTCGATGGTCTAACTCCTT 59.354 45.833 0.00 0.00 0.00 3.36
138 139 5.127356 CCTAAGTCGATGGTCTAACTCCTTT 59.873 44.000 0.00 0.00 0.00 3.11
139 140 5.485209 AAGTCGATGGTCTAACTCCTTTT 57.515 39.130 0.00 0.00 0.00 2.27
140 141 5.074584 AGTCGATGGTCTAACTCCTTTTC 57.925 43.478 0.00 0.00 0.00 2.29
141 142 4.527038 AGTCGATGGTCTAACTCCTTTTCA 59.473 41.667 0.00 0.00 0.00 2.69
142 143 4.626172 GTCGATGGTCTAACTCCTTTTCAC 59.374 45.833 0.00 0.00 0.00 3.18
143 144 4.282449 TCGATGGTCTAACTCCTTTTCACA 59.718 41.667 0.00 0.00 0.00 3.58
144 145 5.046591 TCGATGGTCTAACTCCTTTTCACAT 60.047 40.000 0.00 0.00 0.00 3.21
145 146 6.153851 TCGATGGTCTAACTCCTTTTCACATA 59.846 38.462 0.00 0.00 0.00 2.29
146 147 6.477033 CGATGGTCTAACTCCTTTTCACATAG 59.523 42.308 0.00 0.00 0.00 2.23
147 148 5.488341 TGGTCTAACTCCTTTTCACATAGC 58.512 41.667 0.00 0.00 0.00 2.97
148 149 4.876679 GGTCTAACTCCTTTTCACATAGCC 59.123 45.833 0.00 0.00 0.00 3.93
149 150 5.338463 GGTCTAACTCCTTTTCACATAGCCT 60.338 44.000 0.00 0.00 0.00 4.58
150 151 6.174049 GTCTAACTCCTTTTCACATAGCCTT 58.826 40.000 0.00 0.00 0.00 4.35
151 152 6.092807 GTCTAACTCCTTTTCACATAGCCTTG 59.907 42.308 0.00 0.00 0.00 3.61
152 153 4.373156 ACTCCTTTTCACATAGCCTTGT 57.627 40.909 0.00 0.00 0.00 3.16
153 154 5.499004 ACTCCTTTTCACATAGCCTTGTA 57.501 39.130 0.00 0.00 0.00 2.41
154 155 5.491982 ACTCCTTTTCACATAGCCTTGTAG 58.508 41.667 0.00 0.00 0.00 2.74
155 156 4.261801 TCCTTTTCACATAGCCTTGTAGC 58.738 43.478 0.00 0.00 0.00 3.58
156 157 4.009675 CCTTTTCACATAGCCTTGTAGCA 58.990 43.478 0.00 0.00 34.23 3.49
157 158 4.458989 CCTTTTCACATAGCCTTGTAGCAA 59.541 41.667 0.00 0.00 34.23 3.91
158 159 5.048083 CCTTTTCACATAGCCTTGTAGCAAA 60.048 40.000 0.00 0.00 34.23 3.68
159 160 5.627499 TTTCACATAGCCTTGTAGCAAAG 57.373 39.130 0.00 0.00 34.23 2.77
160 161 3.009723 TCACATAGCCTTGTAGCAAAGC 58.990 45.455 0.00 0.00 34.23 3.51
161 162 2.749076 CACATAGCCTTGTAGCAAAGCA 59.251 45.455 5.43 0.00 34.23 3.91
162 163 2.749621 ACATAGCCTTGTAGCAAAGCAC 59.250 45.455 5.43 0.00 34.23 4.40
163 164 1.438651 TAGCCTTGTAGCAAAGCACG 58.561 50.000 5.43 0.00 34.23 5.34
164 165 0.535102 AGCCTTGTAGCAAAGCACGT 60.535 50.000 5.43 0.00 34.23 4.49
165 166 0.385974 GCCTTGTAGCAAAGCACGTG 60.386 55.000 12.28 12.28 0.00 4.49
166 167 0.385974 CCTTGTAGCAAAGCACGTGC 60.386 55.000 32.79 32.79 42.55 5.34
167 168 0.307453 CTTGTAGCAAAGCACGTGCA 59.693 50.000 39.21 17.54 44.74 4.57
168 169 0.028770 TTGTAGCAAAGCACGTGCAC 59.971 50.000 39.21 27.42 44.74 4.57
169 170 1.082104 GTAGCAAAGCACGTGCACC 60.082 57.895 39.21 23.75 44.74 5.01
170 171 1.227823 TAGCAAAGCACGTGCACCT 60.228 52.632 39.21 28.39 44.74 4.00
171 172 0.817634 TAGCAAAGCACGTGCACCTT 60.818 50.000 39.21 26.05 44.74 3.50
172 173 1.945662 GCAAAGCACGTGCACCTTG 60.946 57.895 39.21 33.84 45.16 3.61
173 174 1.945662 CAAAGCACGTGCACCTTGC 60.946 57.895 39.21 24.17 45.16 4.01
175 176 0.817634 AAAGCACGTGCACCTTGCTA 60.818 50.000 39.21 0.00 45.93 3.49
176 177 1.230635 AAGCACGTGCACCTTGCTAG 61.231 55.000 39.21 11.67 45.93 3.42
177 178 1.961277 GCACGTGCACCTTGCTAGT 60.961 57.895 34.52 7.96 45.31 2.57
178 179 0.669318 GCACGTGCACCTTGCTAGTA 60.669 55.000 34.52 0.00 45.31 1.82
179 180 1.790755 CACGTGCACCTTGCTAGTAA 58.209 50.000 12.15 0.00 45.31 2.24
180 181 2.346803 CACGTGCACCTTGCTAGTAAT 58.653 47.619 12.15 0.00 45.31 1.89
181 182 3.517602 CACGTGCACCTTGCTAGTAATA 58.482 45.455 12.15 0.00 45.31 0.98
182 183 3.930229 CACGTGCACCTTGCTAGTAATAA 59.070 43.478 12.15 0.00 45.31 1.40
183 184 4.570772 CACGTGCACCTTGCTAGTAATAAT 59.429 41.667 12.15 0.00 45.31 1.28
184 185 5.751509 CACGTGCACCTTGCTAGTAATAATA 59.248 40.000 12.15 0.00 45.31 0.98
185 186 6.256975 CACGTGCACCTTGCTAGTAATAATAA 59.743 38.462 12.15 0.00 45.31 1.40
186 187 6.819649 ACGTGCACCTTGCTAGTAATAATAAA 59.180 34.615 12.15 0.00 45.31 1.40
187 188 7.011109 ACGTGCACCTTGCTAGTAATAATAAAG 59.989 37.037 12.15 0.00 45.31 1.85
188 189 7.132863 GTGCACCTTGCTAGTAATAATAAAGC 58.867 38.462 5.22 0.00 45.31 3.51
189 190 7.012421 GTGCACCTTGCTAGTAATAATAAAGCT 59.988 37.037 5.22 0.00 45.31 3.74
190 191 8.208224 TGCACCTTGCTAGTAATAATAAAGCTA 58.792 33.333 0.00 0.00 45.31 3.32
191 192 9.052759 GCACCTTGCTAGTAATAATAAAGCTAA 57.947 33.333 0.00 0.00 40.96 3.09
197 198 9.542462 TGCTAGTAATAATAAAGCTAACACTGG 57.458 33.333 0.00 0.00 34.28 4.00
198 199 9.760077 GCTAGTAATAATAAAGCTAACACTGGA 57.240 33.333 0.00 0.00 0.00 3.86
210 211 7.631717 AGCTAACACTGGAAGAAATAATTCC 57.368 36.000 0.00 0.00 45.45 3.01
211 212 6.603599 AGCTAACACTGGAAGAAATAATTCCC 59.396 38.462 2.45 0.00 44.76 3.97
212 213 6.603599 GCTAACACTGGAAGAAATAATTCCCT 59.396 38.462 2.45 0.00 44.76 4.20
213 214 7.122799 GCTAACACTGGAAGAAATAATTCCCTT 59.877 37.037 2.45 0.00 44.76 3.95
214 215 6.840780 ACACTGGAAGAAATAATTCCCTTG 57.159 37.500 2.45 2.58 44.76 3.61
215 216 6.552008 ACACTGGAAGAAATAATTCCCTTGA 58.448 36.000 2.45 0.00 44.76 3.02
216 217 7.184862 ACACTGGAAGAAATAATTCCCTTGAT 58.815 34.615 2.45 0.00 44.76 2.57
217 218 7.123247 ACACTGGAAGAAATAATTCCCTTGATG 59.877 37.037 2.45 0.00 44.76 3.07
218 219 6.097412 ACTGGAAGAAATAATTCCCTTGATGC 59.903 38.462 2.45 0.00 44.76 3.91
219 220 6.197168 TGGAAGAAATAATTCCCTTGATGCT 58.803 36.000 2.45 0.00 44.76 3.79
220 221 7.353525 TGGAAGAAATAATTCCCTTGATGCTA 58.646 34.615 2.45 0.00 44.76 3.49
221 222 8.006564 TGGAAGAAATAATTCCCTTGATGCTAT 58.993 33.333 2.45 0.00 44.76 2.97
222 223 8.302438 GGAAGAAATAATTCCCTTGATGCTATG 58.698 37.037 0.00 0.00 40.37 2.23
223 224 8.773033 AAGAAATAATTCCCTTGATGCTATGT 57.227 30.769 0.00 0.00 36.12 2.29
224 225 9.866655 AAGAAATAATTCCCTTGATGCTATGTA 57.133 29.630 0.00 0.00 36.12 2.29
225 226 9.866655 AGAAATAATTCCCTTGATGCTATGTAA 57.133 29.630 0.00 0.00 36.12 2.41
249 250 8.974060 AATAGTTGTTTCATCCCAATATACGT 57.026 30.769 0.00 0.00 0.00 3.57
250 251 6.677781 AGTTGTTTCATCCCAATATACGTG 57.322 37.500 0.00 0.00 0.00 4.49
251 252 6.177610 AGTTGTTTCATCCCAATATACGTGT 58.822 36.000 0.00 0.00 0.00 4.49
252 253 6.315393 AGTTGTTTCATCCCAATATACGTGTC 59.685 38.462 0.00 0.00 0.00 3.67
257 258 2.025898 TCCCAATATACGTGTCGCTGA 58.974 47.619 0.00 0.00 0.00 4.26
259 260 3.069016 TCCCAATATACGTGTCGCTGATT 59.931 43.478 0.00 0.00 0.00 2.57
267 268 6.656314 ATACGTGTCGCTGATTTATTTTGA 57.344 33.333 0.00 0.00 0.00 2.69
270 271 5.015733 CGTGTCGCTGATTTATTTTGAGAC 58.984 41.667 0.00 0.00 0.00 3.36
271 272 5.015733 GTGTCGCTGATTTATTTTGAGACG 58.984 41.667 0.00 0.00 31.79 4.18
272 273 4.092821 TGTCGCTGATTTATTTTGAGACGG 59.907 41.667 0.00 0.00 31.79 4.79
280 281 5.502089 TTTATTTTGAGACGGGGGAGTAA 57.498 39.130 0.00 0.00 0.00 2.24
285 286 3.897657 TGAGACGGGGGAGTAATATCT 57.102 47.619 0.00 0.00 0.00 1.98
290 291 2.368875 ACGGGGGAGTAATATCTTGCAG 59.631 50.000 0.00 0.00 0.00 4.41
312 313 3.434319 CCGTTGCCAGCGCTGATT 61.434 61.111 38.06 0.00 35.36 2.57
317 319 2.224079 CGTTGCCAGCGCTGATTAATAT 59.776 45.455 38.06 0.00 35.36 1.28
371 373 1.274703 GGTCCAGGAGGCCAAGATCA 61.275 60.000 5.01 0.00 33.06 2.92
475 485 1.003116 CAGCTGAAGTGAAGTGTGTGC 60.003 52.381 8.42 0.00 0.00 4.57
480 490 2.288666 GAAGTGAAGTGTGTGCCTTGA 58.711 47.619 0.00 0.00 0.00 3.02
489 499 0.734942 GTGTGCCTTGACATGCATGC 60.735 55.000 26.53 18.59 40.07 4.06
498 508 2.438975 CATGCATGCCGGGACAGT 60.439 61.111 14.93 0.00 0.00 3.55
512 522 4.138487 GGGACAGTCCGAGTCATAATTT 57.862 45.455 13.80 0.00 37.43 1.82
542 552 1.021390 AGGACGTACGAACCGACGAT 61.021 55.000 24.41 5.79 41.60 3.73
556 566 1.579361 CGACGATGACACAACTGATCG 59.421 52.381 0.00 0.00 42.66 3.69
594 3649 4.217118 GCATCTCCTTTTGGCCATGTATAG 59.783 45.833 6.09 2.04 40.12 1.31
624 3679 5.222079 TGTTATGTGCCGACATATGGTAT 57.778 39.130 7.80 0.00 43.22 2.73
626 3681 6.160684 TGTTATGTGCCGACATATGGTATAC 58.839 40.000 7.80 0.00 43.22 1.47
627 3682 4.882842 ATGTGCCGACATATGGTATACA 57.117 40.909 7.80 6.16 41.27 2.29
628 3683 4.882842 TGTGCCGACATATGGTATACAT 57.117 40.909 7.80 0.00 43.68 2.29
629 3684 5.222079 TGTGCCGACATATGGTATACATT 57.778 39.130 7.80 0.00 41.03 2.71
630 3685 5.234752 TGTGCCGACATATGGTATACATTC 58.765 41.667 7.80 0.00 41.03 2.67
686 3741 9.936759 AGAGGACAAAAAGAGAAGACTTATAAG 57.063 33.333 11.05 11.05 0.00 1.73
687 3742 9.713713 GAGGACAAAAAGAGAAGACTTATAAGT 57.286 33.333 18.05 18.05 43.16 2.24
816 8269 3.788227 ACATCATAATATGTGGGGCGT 57.212 42.857 0.00 0.00 38.65 5.68
829 8282 3.656045 GGCGTTGGACGTTGGTGG 61.656 66.667 2.27 0.00 44.73 4.61
949 8434 2.972713 TGAAAGCCACTACAGGAGAAGT 59.027 45.455 0.00 0.00 0.00 3.01
1048 8533 0.331954 TTCGCTAGACCTGTCCCTCT 59.668 55.000 0.00 0.00 0.00 3.69
1088 8573 4.033776 ACCACCATCAGCACCCCG 62.034 66.667 0.00 0.00 0.00 5.73
1097 8582 2.041265 AGCACCCCGATCCTCCTT 59.959 61.111 0.00 0.00 0.00 3.36
1297 8803 0.669077 CCTCTACCTCCAATCCGACG 59.331 60.000 0.00 0.00 0.00 5.12
1474 9064 8.798859 TTATCTTCAATCTTCTTTTCCTCCTG 57.201 34.615 0.00 0.00 0.00 3.86
1475 9065 6.439636 TCTTCAATCTTCTTTTCCTCCTGA 57.560 37.500 0.00 0.00 0.00 3.86
1503 9096 3.252701 GCTATTAGTCAGCTAGGCGTGTA 59.747 47.826 0.00 0.00 36.07 2.90
1519 9124 3.305094 GCGTGTATGTGCACTAAACGTAT 59.695 43.478 25.88 12.51 37.24 3.06
1540 9145 1.000052 TCACGCATGTTCGTCCTGTAA 60.000 47.619 0.00 0.00 41.21 2.41
1588 9193 3.331718 ACTACCTATGGTCTTCCCCTC 57.668 52.381 0.00 0.00 37.09 4.30
1595 9200 1.758906 GGTCTTCCCCTCTCTCCGG 60.759 68.421 0.00 0.00 0.00 5.14
1596 9201 1.000612 GTCTTCCCCTCTCTCCGGT 59.999 63.158 0.00 0.00 0.00 5.28
1599 9204 0.537653 CTTCCCCTCTCTCCGGTTTC 59.462 60.000 0.00 0.00 0.00 2.78
1603 9208 1.351350 CCCCTCTCTCCGGTTTCTTTT 59.649 52.381 0.00 0.00 0.00 2.27
1702 9396 2.233922 ACTCCGGGATTACTCACAACAG 59.766 50.000 0.00 0.00 0.00 3.16
1704 9398 2.496070 TCCGGGATTACTCACAACAGAG 59.504 50.000 0.00 0.00 41.44 3.35
1721 9415 7.166970 CACAACAGAGTTTGTCTCATTGATTTG 59.833 37.037 14.28 0.00 44.98 2.32
1732 9426 8.538409 TGTCTCATTGATTTGTCGGATATATG 57.462 34.615 0.00 0.00 0.00 1.78
1759 9461 5.220854 CGCAAGAAGAAAGAGAAAAAGTCCA 60.221 40.000 0.00 0.00 43.02 4.02
1772 9659 8.787852 AGAGAAAAAGTCCATGATCAAGTTTAC 58.212 33.333 0.00 0.00 0.00 2.01
1795 9682 5.783100 CAATTTCAATGAAATGGGAACCG 57.217 39.130 20.40 2.27 42.20 4.44
1815 9702 3.865164 CCGGGCTTGCTTTTATCAATTTC 59.135 43.478 0.00 0.00 0.00 2.17
1824 9711 7.418840 TGCTTTTATCAATTTCGTTTGCAAT 57.581 28.000 0.00 0.00 0.00 3.56
1826 9713 8.008844 TGCTTTTATCAATTTCGTTTGCAATTC 58.991 29.630 0.00 0.00 0.00 2.17
1856 9896 3.094484 TGTCCATATTTTCGGCCCTTT 57.906 42.857 0.00 0.00 0.00 3.11
1859 9899 3.028130 TCCATATTTTCGGCCCTTTTCC 58.972 45.455 0.00 0.00 0.00 3.13
1861 9901 1.855295 TATTTTCGGCCCTTTTCCCC 58.145 50.000 0.00 0.00 0.00 4.81
1862 9902 0.178918 ATTTTCGGCCCTTTTCCCCA 60.179 50.000 0.00 0.00 0.00 4.96
1863 9903 1.116536 TTTTCGGCCCTTTTCCCCAC 61.117 55.000 0.00 0.00 0.00 4.61
1864 9904 2.014033 TTTCGGCCCTTTTCCCCACT 62.014 55.000 0.00 0.00 0.00 4.00
1865 9905 1.135068 TTCGGCCCTTTTCCCCACTA 61.135 55.000 0.00 0.00 0.00 2.74
1867 9907 0.841289 CGGCCCTTTTCCCCACTATA 59.159 55.000 0.00 0.00 0.00 1.31
1868 9908 1.476291 CGGCCCTTTTCCCCACTATAC 60.476 57.143 0.00 0.00 0.00 1.47
1869 9909 1.567175 GGCCCTTTTCCCCACTATACA 59.433 52.381 0.00 0.00 0.00 2.29
1870 9910 2.177016 GGCCCTTTTCCCCACTATACAT 59.823 50.000 0.00 0.00 0.00 2.29
1871 9911 3.373767 GGCCCTTTTCCCCACTATACATT 60.374 47.826 0.00 0.00 0.00 2.71
1872 9912 4.141111 GGCCCTTTTCCCCACTATACATTA 60.141 45.833 0.00 0.00 0.00 1.90
1873 9913 5.459094 GGCCCTTTTCCCCACTATACATTAT 60.459 44.000 0.00 0.00 0.00 1.28
1874 9914 5.476945 GCCCTTTTCCCCACTATACATTATG 59.523 44.000 0.00 0.00 0.00 1.90
1875 9915 5.476945 CCCTTTTCCCCACTATACATTATGC 59.523 44.000 0.00 0.00 0.00 3.14
1876 9916 6.068010 CCTTTTCCCCACTATACATTATGCA 58.932 40.000 0.00 0.00 0.00 3.96
1877 9917 6.721208 CCTTTTCCCCACTATACATTATGCAT 59.279 38.462 3.79 3.79 0.00 3.96
1878 9918 7.233348 CCTTTTCCCCACTATACATTATGCATT 59.767 37.037 3.54 0.00 0.00 3.56
1879 9919 8.546083 TTTTCCCCACTATACATTATGCATTT 57.454 30.769 3.54 0.00 0.00 2.32
1880 9920 8.546083 TTTCCCCACTATACATTATGCATTTT 57.454 30.769 3.54 0.00 0.00 1.82
1881 9921 7.759489 TCCCCACTATACATTATGCATTTTC 57.241 36.000 3.54 0.00 0.00 2.29
1882 9922 6.719370 TCCCCACTATACATTATGCATTTTCC 59.281 38.462 3.54 0.00 0.00 3.13
1883 9923 6.721208 CCCCACTATACATTATGCATTTTCCT 59.279 38.462 3.54 0.00 0.00 3.36
1884 9924 7.094205 CCCCACTATACATTATGCATTTTCCTC 60.094 40.741 3.54 0.00 0.00 3.71
1885 9925 7.094205 CCCACTATACATTATGCATTTTCCTCC 60.094 40.741 3.54 0.00 0.00 4.30
1886 9926 7.667219 CCACTATACATTATGCATTTTCCTCCT 59.333 37.037 3.54 0.00 0.00 3.69
1887 9927 9.725019 CACTATACATTATGCATTTTCCTCCTA 57.275 33.333 3.54 0.00 0.00 2.94
1891 9931 7.961326 ACATTATGCATTTTCCTCCTAACTT 57.039 32.000 3.54 0.00 0.00 2.66
1892 9932 8.366359 ACATTATGCATTTTCCTCCTAACTTT 57.634 30.769 3.54 0.00 0.00 2.66
1893 9933 9.474313 ACATTATGCATTTTCCTCCTAACTTTA 57.526 29.630 3.54 0.00 0.00 1.85
1894 9934 9.956720 CATTATGCATTTTCCTCCTAACTTTAG 57.043 33.333 3.54 0.00 0.00 1.85
1895 9935 9.700831 ATTATGCATTTTCCTCCTAACTTTAGT 57.299 29.630 3.54 0.00 0.00 2.24
1896 9936 9.528489 TTATGCATTTTCCTCCTAACTTTAGTT 57.472 29.630 3.54 0.29 41.73 2.24
1897 9937 7.833285 TGCATTTTCCTCCTAACTTTAGTTT 57.167 32.000 0.00 0.00 39.31 2.66
1898 9938 8.927675 TGCATTTTCCTCCTAACTTTAGTTTA 57.072 30.769 0.00 0.00 39.31 2.01
1899 9939 9.528489 TGCATTTTCCTCCTAACTTTAGTTTAT 57.472 29.630 0.00 0.00 39.31 1.40
1918 9958 8.138928 AGTTTATATATATGCACTCAGGAGCA 57.861 34.615 5.44 0.00 42.60 4.26
1920 9960 9.039870 GTTTATATATATGCACTCAGGAGCATC 57.960 37.037 9.85 0.00 44.15 3.91
1921 9961 6.803366 ATATATATGCACTCAGGAGCATCA 57.197 37.500 9.85 1.59 44.15 3.07
1922 9962 3.851458 ATATGCACTCAGGAGCATCAA 57.149 42.857 9.85 0.00 44.15 2.57
1923 9963 2.730934 ATGCACTCAGGAGCATCAAT 57.269 45.000 1.27 0.00 44.15 2.57
1924 9964 2.502142 TGCACTCAGGAGCATCAATT 57.498 45.000 0.00 0.00 36.25 2.32
1925 9965 2.362736 TGCACTCAGGAGCATCAATTC 58.637 47.619 0.00 0.00 36.25 2.17
1926 9966 2.026542 TGCACTCAGGAGCATCAATTCT 60.027 45.455 0.00 0.00 36.25 2.40
1927 9967 3.015327 GCACTCAGGAGCATCAATTCTT 58.985 45.455 0.00 0.00 36.25 2.52
1928 9968 3.065095 GCACTCAGGAGCATCAATTCTTC 59.935 47.826 0.00 0.00 36.25 2.87
1929 9969 4.259356 CACTCAGGAGCATCAATTCTTCA 58.741 43.478 0.00 0.00 36.25 3.02
1930 9970 4.333095 CACTCAGGAGCATCAATTCTTCAG 59.667 45.833 0.00 0.00 36.25 3.02
1931 9971 3.878103 CTCAGGAGCATCAATTCTTCAGG 59.122 47.826 0.00 0.00 36.25 3.86
1932 9972 3.265221 TCAGGAGCATCAATTCTTCAGGT 59.735 43.478 0.00 0.00 36.25 4.00
1933 9973 4.015084 CAGGAGCATCAATTCTTCAGGTT 58.985 43.478 0.00 0.00 36.25 3.50
1934 9974 4.015084 AGGAGCATCAATTCTTCAGGTTG 58.985 43.478 0.00 0.00 36.25 3.77
1935 9975 3.760684 GGAGCATCAATTCTTCAGGTTGT 59.239 43.478 0.00 0.00 36.25 3.32
1936 9976 4.142513 GGAGCATCAATTCTTCAGGTTGTC 60.143 45.833 0.00 0.00 36.25 3.18
1937 9977 4.660168 AGCATCAATTCTTCAGGTTGTCT 58.340 39.130 0.00 0.00 0.00 3.41
1938 9978 4.699257 AGCATCAATTCTTCAGGTTGTCTC 59.301 41.667 0.00 0.00 0.00 3.36
1939 9979 4.456911 GCATCAATTCTTCAGGTTGTCTCA 59.543 41.667 0.00 0.00 0.00 3.27
1940 9980 5.391736 GCATCAATTCTTCAGGTTGTCTCAG 60.392 44.000 0.00 0.00 0.00 3.35
1941 9981 4.067896 TCAATTCTTCAGGTTGTCTCAGC 58.932 43.478 0.00 0.00 0.00 4.26
1942 9982 4.070716 CAATTCTTCAGGTTGTCTCAGCT 58.929 43.478 0.00 0.00 0.00 4.24
1943 9983 2.827800 TCTTCAGGTTGTCTCAGCTG 57.172 50.000 7.63 7.63 42.62 4.24
1944 9984 1.155042 CTTCAGGTTGTCTCAGCTGC 58.845 55.000 9.47 0.00 41.29 5.25
1945 9985 0.469494 TTCAGGTTGTCTCAGCTGCA 59.531 50.000 9.47 0.00 41.29 4.41
1946 9986 0.034476 TCAGGTTGTCTCAGCTGCAG 59.966 55.000 10.11 10.11 41.29 4.41
1947 9987 1.302351 AGGTTGTCTCAGCTGCAGC 60.302 57.895 31.53 31.53 42.49 5.25
1948 9988 1.598962 GGTTGTCTCAGCTGCAGCA 60.599 57.895 38.24 19.64 45.16 4.41
1949 9989 1.168407 GGTTGTCTCAGCTGCAGCAA 61.168 55.000 38.24 24.96 45.16 3.91
1950 9990 0.664761 GTTGTCTCAGCTGCAGCAAA 59.335 50.000 38.24 24.60 45.16 3.68
1951 9991 1.066002 GTTGTCTCAGCTGCAGCAAAA 59.934 47.619 38.24 22.13 45.16 2.44
1952 9992 1.391577 TGTCTCAGCTGCAGCAAAAA 58.608 45.000 38.24 19.30 45.16 1.94
1980 10020 8.797266 AAAATTAGCAAGAAGAAAGTTAACGG 57.203 30.769 0.00 0.00 0.00 4.44
1981 10021 5.934935 TTAGCAAGAAGAAAGTTAACGGG 57.065 39.130 0.00 0.00 0.00 5.28
1982 10022 3.816994 AGCAAGAAGAAAGTTAACGGGT 58.183 40.909 0.00 0.00 0.00 5.28
1983 10023 3.564225 AGCAAGAAGAAAGTTAACGGGTG 59.436 43.478 0.00 0.00 0.00 4.61
1984 10024 3.314357 GCAAGAAGAAAGTTAACGGGTGT 59.686 43.478 0.00 0.00 0.00 4.16
1985 10025 4.512571 GCAAGAAGAAAGTTAACGGGTGTA 59.487 41.667 0.00 0.00 0.00 2.90
1986 10026 5.007921 GCAAGAAGAAAGTTAACGGGTGTAA 59.992 40.000 0.00 0.00 0.00 2.41
1987 10027 6.424683 CAAGAAGAAAGTTAACGGGTGTAAC 58.575 40.000 0.00 0.00 0.00 2.50
1988 10028 5.673514 AGAAGAAAGTTAACGGGTGTAACA 58.326 37.500 0.00 0.00 39.98 2.41
1989 10029 5.756833 AGAAGAAAGTTAACGGGTGTAACAG 59.243 40.000 0.00 0.00 39.98 3.16
1990 10030 5.027293 AGAAAGTTAACGGGTGTAACAGT 57.973 39.130 0.00 0.00 39.98 3.55
1991 10031 5.052481 AGAAAGTTAACGGGTGTAACAGTC 58.948 41.667 0.00 0.00 39.98 3.51
1992 10032 3.017265 AGTTAACGGGTGTAACAGTCG 57.983 47.619 0.00 0.00 39.98 4.18
1993 10033 2.622942 AGTTAACGGGTGTAACAGTCGA 59.377 45.455 0.00 0.00 39.98 4.20
1994 10034 3.068024 AGTTAACGGGTGTAACAGTCGAA 59.932 43.478 0.00 0.00 39.98 3.71
1995 10035 2.825861 AACGGGTGTAACAGTCGAAT 57.174 45.000 0.00 0.00 39.98 3.34
1996 10036 2.074547 ACGGGTGTAACAGTCGAATG 57.925 50.000 11.98 11.98 39.98 2.67
1997 10037 1.614903 ACGGGTGTAACAGTCGAATGA 59.385 47.619 21.18 0.00 39.98 2.57
1998 10038 2.036217 ACGGGTGTAACAGTCGAATGAA 59.964 45.455 21.18 4.13 39.98 2.57
1999 10039 3.061322 CGGGTGTAACAGTCGAATGAAA 58.939 45.455 21.18 3.74 39.98 2.69
2000 10040 3.682858 CGGGTGTAACAGTCGAATGAAAT 59.317 43.478 21.18 7.76 39.98 2.17
2001 10041 4.435518 CGGGTGTAACAGTCGAATGAAATG 60.436 45.833 21.18 0.00 39.98 2.32
2002 10042 4.403453 GGTGTAACAGTCGAATGAAATGC 58.597 43.478 21.18 9.20 39.98 3.56
2003 10043 4.083537 GGTGTAACAGTCGAATGAAATGCA 60.084 41.667 21.18 11.61 39.98 3.96
2004 10044 5.391950 GGTGTAACAGTCGAATGAAATGCAT 60.392 40.000 21.18 0.00 39.98 3.96
2005 10045 5.509272 GTGTAACAGTCGAATGAAATGCATG 59.491 40.000 21.18 0.00 35.01 4.06
2006 10046 3.770263 ACAGTCGAATGAAATGCATGG 57.230 42.857 21.18 0.00 37.28 3.66
2007 10047 2.424601 ACAGTCGAATGAAATGCATGGG 59.575 45.455 21.18 0.00 37.28 4.00
2008 10048 1.406539 AGTCGAATGAAATGCATGGGC 59.593 47.619 0.00 0.00 37.28 5.36
2009 10049 0.746063 TCGAATGAAATGCATGGGCC 59.254 50.000 0.00 0.00 40.13 5.80
2010 10050 0.249573 CGAATGAAATGCATGGGCCC 60.250 55.000 17.59 17.59 40.13 5.80
2011 10051 1.125633 GAATGAAATGCATGGGCCCT 58.874 50.000 25.70 5.48 40.13 5.19
2012 10052 1.487558 GAATGAAATGCATGGGCCCTT 59.512 47.619 25.70 15.22 40.13 3.95
2013 10053 2.475339 ATGAAATGCATGGGCCCTTA 57.525 45.000 25.70 2.97 40.13 2.69
2014 10054 2.244486 TGAAATGCATGGGCCCTTAA 57.756 45.000 25.70 9.08 40.13 1.85
2015 10055 2.109774 TGAAATGCATGGGCCCTTAAG 58.890 47.619 25.70 11.15 40.13 1.85
2016 10056 2.292126 TGAAATGCATGGGCCCTTAAGA 60.292 45.455 25.70 1.02 40.13 2.10
2017 10057 1.780503 AATGCATGGGCCCTTAAGAC 58.219 50.000 25.70 7.10 40.13 3.01
2018 10058 0.929244 ATGCATGGGCCCTTAAGACT 59.071 50.000 25.70 0.00 40.13 3.24
2019 10059 0.704076 TGCATGGGCCCTTAAGACTT 59.296 50.000 25.70 0.00 40.13 3.01
2020 10060 1.077005 TGCATGGGCCCTTAAGACTTT 59.923 47.619 25.70 0.00 40.13 2.66
2021 10061 2.179427 GCATGGGCCCTTAAGACTTTT 58.821 47.619 25.70 0.00 0.00 2.27
2022 10062 2.166459 GCATGGGCCCTTAAGACTTTTC 59.834 50.000 25.70 0.00 0.00 2.29
2023 10063 3.701664 CATGGGCCCTTAAGACTTTTCT 58.298 45.455 25.70 0.00 0.00 2.52
2024 10064 3.434940 TGGGCCCTTAAGACTTTTCTC 57.565 47.619 25.70 0.00 0.00 2.87
2025 10065 2.714250 TGGGCCCTTAAGACTTTTCTCA 59.286 45.455 25.70 0.00 0.00 3.27
2057 10100 7.226720 GGAAAGACTTTTCTTCACATGTACAGA 59.773 37.037 0.00 0.00 41.56 3.41
2061 10104 6.000219 ACTTTTCTTCACATGTACAGAGCAT 59.000 36.000 0.00 0.00 0.00 3.79
2068 10111 4.162888 TCACATGTACAGAGCATGGAATCT 59.837 41.667 0.00 0.00 45.68 2.40
2069 10112 4.510711 CACATGTACAGAGCATGGAATCTC 59.489 45.833 0.00 0.00 45.68 2.75
2127 10170 0.736636 CGTACGACCATCTGTAGCCA 59.263 55.000 10.44 0.00 0.00 4.75
2135 10178 0.529337 CATCTGTAGCCACTGCGGAG 60.529 60.000 0.85 0.85 44.33 4.63
2171 10218 3.516981 TGCTTGCTGTCTATCTGACTC 57.483 47.619 0.00 0.00 45.54 3.36
2245 10293 1.375908 GTCAGTCCGATTGCAGGCA 60.376 57.895 0.00 0.00 0.00 4.75
2246 10294 0.955428 GTCAGTCCGATTGCAGGCAA 60.955 55.000 9.38 9.38 40.47 4.52
2247 10295 0.674581 TCAGTCCGATTGCAGGCAAG 60.675 55.000 12.66 0.00 39.47 4.01
2248 10296 0.674581 CAGTCCGATTGCAGGCAAGA 60.675 55.000 12.66 1.86 39.47 3.02
2249 10297 0.674895 AGTCCGATTGCAGGCAAGAC 60.675 55.000 12.66 13.30 39.47 3.01
2250 10298 0.674895 GTCCGATTGCAGGCAAGACT 60.675 55.000 12.66 0.00 39.47 3.24
2251 10299 0.674581 TCCGATTGCAGGCAAGACTG 60.675 55.000 12.66 0.00 39.47 3.51
2326 10374 6.744537 GCTACTTCAATGTGTCATCATGAAAC 59.255 38.462 0.29 0.29 35.19 2.78
2333 10381 8.075574 TCAATGTGTCATCATGAAACTACAAAC 58.924 33.333 9.48 0.00 35.64 2.93
2342 10390 6.898041 TCATGAAACTACAAACGGAGAATTG 58.102 36.000 0.00 0.00 34.97 2.32
2350 10398 5.461032 ACAAACGGAGAATTGGCATTTTA 57.539 34.783 0.00 0.00 33.63 1.52
2352 10400 6.099341 ACAAACGGAGAATTGGCATTTTATC 58.901 36.000 0.00 0.00 33.63 1.75
2353 10401 4.918810 ACGGAGAATTGGCATTTTATCC 57.081 40.909 12.07 12.07 0.00 2.59
2354 10402 3.315191 ACGGAGAATTGGCATTTTATCCG 59.685 43.478 29.51 29.51 42.86 4.18
2360 10408 2.418368 TGGCATTTTATCCGAGCAGT 57.582 45.000 0.00 0.00 0.00 4.40
2372 10420 3.937814 TCCGAGCAGTGTGAATAATGTT 58.062 40.909 0.00 0.00 0.00 2.71
2377 10425 5.755375 CGAGCAGTGTGAATAATGTTAGGAT 59.245 40.000 0.00 0.00 0.00 3.24
2385 10433 9.035607 GTGTGAATAATGTTAGGATCACTACTG 57.964 37.037 0.00 0.00 38.34 2.74
2388 10436 7.071196 TGAATAATGTTAGGATCACTACTGCCT 59.929 37.037 0.00 0.00 34.56 4.75
2390 10438 5.793030 ATGTTAGGATCACTACTGCCTAC 57.207 43.478 0.00 0.00 33.00 3.18
2391 10439 3.630769 TGTTAGGATCACTACTGCCTACG 59.369 47.826 0.00 0.00 33.00 3.51
2395 10443 2.292845 GGATCACTACTGCCTACGTACC 59.707 54.545 0.00 0.00 0.00 3.34
2401 10451 3.512724 ACTACTGCCTACGTACCACAATT 59.487 43.478 0.00 0.00 0.00 2.32
2413 10463 6.578944 ACGTACCACAATTGATATTCAGCTA 58.421 36.000 13.59 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.476297 TCTTGGGCGATTATAGTAGGTCA 58.524 43.478 0.00 0.00 0.00 4.02
1 2 5.662674 ATCTTGGGCGATTATAGTAGGTC 57.337 43.478 0.00 0.00 0.00 3.85
3 4 6.287589 AGAATCTTGGGCGATTATAGTAGG 57.712 41.667 0.00 0.00 33.96 3.18
4 5 6.071334 TGGAGAATCTTGGGCGATTATAGTAG 60.071 42.308 0.00 0.00 33.96 2.57
5 6 5.778241 TGGAGAATCTTGGGCGATTATAGTA 59.222 40.000 0.00 0.00 33.96 1.82
6 7 4.593206 TGGAGAATCTTGGGCGATTATAGT 59.407 41.667 0.00 0.00 33.96 2.12
7 8 5.152623 TGGAGAATCTTGGGCGATTATAG 57.847 43.478 0.00 0.00 33.96 1.31
8 9 5.163248 TGTTGGAGAATCTTGGGCGATTATA 60.163 40.000 0.00 0.00 33.96 0.98
9 10 4.137543 GTTGGAGAATCTTGGGCGATTAT 58.862 43.478 0.00 0.00 33.96 1.28
10 11 3.054728 TGTTGGAGAATCTTGGGCGATTA 60.055 43.478 0.00 0.00 33.96 1.75
11 12 2.290896 TGTTGGAGAATCTTGGGCGATT 60.291 45.455 0.00 0.00 36.38 3.34
12 13 1.281867 TGTTGGAGAATCTTGGGCGAT 59.718 47.619 0.00 0.00 33.73 4.58
13 14 0.690192 TGTTGGAGAATCTTGGGCGA 59.310 50.000 0.00 0.00 33.73 5.54
14 15 1.200020 GTTGTTGGAGAATCTTGGGCG 59.800 52.381 0.00 0.00 33.73 6.13
15 16 2.519013 AGTTGTTGGAGAATCTTGGGC 58.481 47.619 0.00 0.00 33.73 5.36
16 17 4.651778 TGTAGTTGTTGGAGAATCTTGGG 58.348 43.478 0.00 0.00 33.73 4.12
17 18 4.154918 GCTGTAGTTGTTGGAGAATCTTGG 59.845 45.833 0.00 0.00 33.73 3.61
18 19 4.756642 TGCTGTAGTTGTTGGAGAATCTTG 59.243 41.667 0.00 0.00 33.73 3.02
19 20 4.757149 GTGCTGTAGTTGTTGGAGAATCTT 59.243 41.667 0.00 0.00 33.73 2.40
20 21 4.319177 GTGCTGTAGTTGTTGGAGAATCT 58.681 43.478 0.00 0.00 33.73 2.40
21 22 3.123621 CGTGCTGTAGTTGTTGGAGAATC 59.876 47.826 0.00 0.00 0.00 2.52
22 23 3.067106 CGTGCTGTAGTTGTTGGAGAAT 58.933 45.455 0.00 0.00 0.00 2.40
23 24 2.101750 TCGTGCTGTAGTTGTTGGAGAA 59.898 45.455 0.00 0.00 0.00 2.87
24 25 1.684450 TCGTGCTGTAGTTGTTGGAGA 59.316 47.619 0.00 0.00 0.00 3.71
25 26 2.148916 TCGTGCTGTAGTTGTTGGAG 57.851 50.000 0.00 0.00 0.00 3.86
26 27 2.683968 GATCGTGCTGTAGTTGTTGGA 58.316 47.619 0.00 0.00 0.00 3.53
27 28 1.390123 CGATCGTGCTGTAGTTGTTGG 59.610 52.381 7.03 0.00 0.00 3.77
28 29 2.058798 ACGATCGTGCTGTAGTTGTTG 58.941 47.619 22.06 0.00 0.00 3.33
29 30 2.433868 ACGATCGTGCTGTAGTTGTT 57.566 45.000 22.06 0.00 0.00 2.83
30 31 2.325761 GAACGATCGTGCTGTAGTTGT 58.674 47.619 23.51 0.71 0.00 3.32
31 32 1.317611 CGAACGATCGTGCTGTAGTTG 59.682 52.381 23.51 4.00 44.06 3.16
32 33 1.614385 CGAACGATCGTGCTGTAGTT 58.386 50.000 23.51 2.45 44.06 2.24
33 34 3.307829 CGAACGATCGTGCTGTAGT 57.692 52.632 23.51 3.33 44.06 2.73
43 44 5.462398 AGGAGCAAATGTATAACGAACGATC 59.538 40.000 0.14 0.00 0.00 3.69
44 45 5.357257 AGGAGCAAATGTATAACGAACGAT 58.643 37.500 0.14 0.00 0.00 3.73
45 46 4.751060 AGGAGCAAATGTATAACGAACGA 58.249 39.130 0.14 0.00 0.00 3.85
46 47 4.804139 AGAGGAGCAAATGTATAACGAACG 59.196 41.667 0.00 0.00 0.00 3.95
47 48 6.663944 AAGAGGAGCAAATGTATAACGAAC 57.336 37.500 0.00 0.00 0.00 3.95
48 49 7.681939 AAAAGAGGAGCAAATGTATAACGAA 57.318 32.000 0.00 0.00 0.00 3.85
49 50 8.780846 TTAAAAGAGGAGCAAATGTATAACGA 57.219 30.769 0.00 0.00 0.00 3.85
50 51 7.640240 GCTTAAAAGAGGAGCAAATGTATAACG 59.360 37.037 0.00 0.00 36.45 3.18
51 52 7.915923 GGCTTAAAAGAGGAGCAAATGTATAAC 59.084 37.037 0.00 0.00 38.14 1.89
52 53 7.613801 TGGCTTAAAAGAGGAGCAAATGTATAA 59.386 33.333 0.00 0.00 38.14 0.98
53 54 7.116075 TGGCTTAAAAGAGGAGCAAATGTATA 58.884 34.615 0.00 0.00 38.14 1.47
54 55 5.951747 TGGCTTAAAAGAGGAGCAAATGTAT 59.048 36.000 0.00 0.00 38.14 2.29
55 56 5.321102 TGGCTTAAAAGAGGAGCAAATGTA 58.679 37.500 0.00 0.00 38.14 2.29
56 57 4.151883 TGGCTTAAAAGAGGAGCAAATGT 58.848 39.130 0.00 0.00 38.14 2.71
57 58 4.789012 TGGCTTAAAAGAGGAGCAAATG 57.211 40.909 0.00 0.00 38.14 2.32
58 59 5.018809 TGATGGCTTAAAAGAGGAGCAAAT 58.981 37.500 0.00 0.00 38.14 2.32
59 60 4.406456 TGATGGCTTAAAAGAGGAGCAAA 58.594 39.130 0.00 0.00 38.14 3.68
60 61 4.032960 TGATGGCTTAAAAGAGGAGCAA 57.967 40.909 0.00 0.00 38.14 3.91
61 62 3.719268 TGATGGCTTAAAAGAGGAGCA 57.281 42.857 0.00 0.00 38.14 4.26
62 63 5.278218 GCTATTGATGGCTTAAAAGAGGAGC 60.278 44.000 0.00 0.00 35.71 4.70
63 64 5.049818 CGCTATTGATGGCTTAAAAGAGGAG 60.050 44.000 0.00 0.00 31.46 3.69
64 65 4.816385 CGCTATTGATGGCTTAAAAGAGGA 59.184 41.667 0.00 0.00 31.46 3.71
65 66 4.576463 ACGCTATTGATGGCTTAAAAGAGG 59.424 41.667 0.00 0.00 31.46 3.69
66 67 5.741388 ACGCTATTGATGGCTTAAAAGAG 57.259 39.130 0.00 0.00 31.46 2.85
67 68 6.596106 TGTTACGCTATTGATGGCTTAAAAGA 59.404 34.615 1.00 0.00 31.77 2.52
68 69 6.781138 TGTTACGCTATTGATGGCTTAAAAG 58.219 36.000 1.00 0.00 31.77 2.27
69 70 6.676943 GCTGTTACGCTATTGATGGCTTAAAA 60.677 38.462 1.00 0.00 31.77 1.52
70 71 5.220777 GCTGTTACGCTATTGATGGCTTAAA 60.221 40.000 1.00 0.00 31.77 1.52
71 72 4.272504 GCTGTTACGCTATTGATGGCTTAA 59.727 41.667 0.00 0.00 31.46 1.85
72 73 3.807622 GCTGTTACGCTATTGATGGCTTA 59.192 43.478 0.00 0.00 31.46 3.09
73 74 2.614057 GCTGTTACGCTATTGATGGCTT 59.386 45.455 0.00 0.00 31.46 4.35
74 75 2.213499 GCTGTTACGCTATTGATGGCT 58.787 47.619 0.00 0.00 31.46 4.75
75 76 1.264288 GGCTGTTACGCTATTGATGGC 59.736 52.381 0.20 0.00 0.00 4.40
76 77 1.873591 GGGCTGTTACGCTATTGATGG 59.126 52.381 0.20 0.00 0.00 3.51
77 78 1.873591 GGGGCTGTTACGCTATTGATG 59.126 52.381 0.20 0.00 0.00 3.07
78 79 1.488812 TGGGGCTGTTACGCTATTGAT 59.511 47.619 0.20 0.00 0.00 2.57
79 80 0.906066 TGGGGCTGTTACGCTATTGA 59.094 50.000 0.20 0.00 0.00 2.57
80 81 1.670811 CTTGGGGCTGTTACGCTATTG 59.329 52.381 0.20 0.00 0.00 1.90
81 82 1.557832 TCTTGGGGCTGTTACGCTATT 59.442 47.619 0.20 0.00 0.00 1.73
82 83 1.200519 TCTTGGGGCTGTTACGCTAT 58.799 50.000 0.20 0.00 0.00 2.97
83 84 1.200519 ATCTTGGGGCTGTTACGCTA 58.799 50.000 0.20 0.00 0.00 4.26
84 85 1.134491 GTATCTTGGGGCTGTTACGCT 60.134 52.381 0.20 0.00 0.00 5.07
85 86 1.296727 GTATCTTGGGGCTGTTACGC 58.703 55.000 0.00 0.00 0.00 4.42
86 87 1.208535 TGGTATCTTGGGGCTGTTACG 59.791 52.381 0.00 0.00 0.00 3.18
87 88 3.359695 TTGGTATCTTGGGGCTGTTAC 57.640 47.619 0.00 0.00 0.00 2.50
88 89 3.589735 TCTTTGGTATCTTGGGGCTGTTA 59.410 43.478 0.00 0.00 0.00 2.41
89 90 2.378547 TCTTTGGTATCTTGGGGCTGTT 59.621 45.455 0.00 0.00 0.00 3.16
90 91 1.992557 TCTTTGGTATCTTGGGGCTGT 59.007 47.619 0.00 0.00 0.00 4.40
91 92 2.806945 TCTTTGGTATCTTGGGGCTG 57.193 50.000 0.00 0.00 0.00 4.85
92 93 3.126453 AGATCTTTGGTATCTTGGGGCT 58.874 45.455 0.00 0.00 29.18 5.19
93 94 3.481453 GAGATCTTTGGTATCTTGGGGC 58.519 50.000 0.00 0.00 33.82 5.80
94 95 3.718956 AGGAGATCTTTGGTATCTTGGGG 59.281 47.826 0.00 0.00 33.82 4.96
95 96 6.100424 ACTTAGGAGATCTTTGGTATCTTGGG 59.900 42.308 0.00 0.00 33.82 4.12
96 97 7.130681 ACTTAGGAGATCTTTGGTATCTTGG 57.869 40.000 0.00 0.00 33.82 3.61
97 98 6.920758 CGACTTAGGAGATCTTTGGTATCTTG 59.079 42.308 0.00 0.00 33.82 3.02
98 99 6.834451 TCGACTTAGGAGATCTTTGGTATCTT 59.166 38.462 0.00 0.00 33.82 2.40
99 100 6.366340 TCGACTTAGGAGATCTTTGGTATCT 58.634 40.000 0.00 0.00 36.40 1.98
100 101 6.636562 TCGACTTAGGAGATCTTTGGTATC 57.363 41.667 0.00 0.00 0.00 2.24
101 102 6.015010 CCATCGACTTAGGAGATCTTTGGTAT 60.015 42.308 0.00 0.00 0.00 2.73
102 103 5.302059 CCATCGACTTAGGAGATCTTTGGTA 59.698 44.000 0.00 0.00 0.00 3.25
103 104 4.100189 CCATCGACTTAGGAGATCTTTGGT 59.900 45.833 0.00 0.00 0.00 3.67
104 105 4.100189 ACCATCGACTTAGGAGATCTTTGG 59.900 45.833 0.00 0.00 0.00 3.28
105 106 5.068460 AGACCATCGACTTAGGAGATCTTTG 59.932 44.000 0.00 0.00 0.00 2.77
106 107 5.205056 AGACCATCGACTTAGGAGATCTTT 58.795 41.667 0.00 0.00 0.00 2.52
107 108 4.798882 AGACCATCGACTTAGGAGATCTT 58.201 43.478 0.00 0.00 0.00 2.40
108 109 4.447138 AGACCATCGACTTAGGAGATCT 57.553 45.455 0.00 0.00 0.00 2.75
109 110 5.766174 AGTTAGACCATCGACTTAGGAGATC 59.234 44.000 0.00 0.00 0.00 2.75
110 111 5.697067 AGTTAGACCATCGACTTAGGAGAT 58.303 41.667 0.00 0.00 0.00 2.75
111 112 5.113446 AGTTAGACCATCGACTTAGGAGA 57.887 43.478 0.00 0.00 0.00 3.71
112 113 4.276431 GGAGTTAGACCATCGACTTAGGAG 59.724 50.000 0.00 0.00 0.00 3.69
113 114 4.079901 AGGAGTTAGACCATCGACTTAGGA 60.080 45.833 0.00 0.00 0.00 2.94
114 115 4.208746 AGGAGTTAGACCATCGACTTAGG 58.791 47.826 0.00 0.00 0.00 2.69
115 116 5.838531 AAGGAGTTAGACCATCGACTTAG 57.161 43.478 0.00 0.00 0.00 2.18
116 117 6.209986 TGAAAAGGAGTTAGACCATCGACTTA 59.790 38.462 0.00 0.00 0.00 2.24
117 118 5.011738 TGAAAAGGAGTTAGACCATCGACTT 59.988 40.000 0.00 0.00 0.00 3.01
118 119 4.527038 TGAAAAGGAGTTAGACCATCGACT 59.473 41.667 0.00 0.00 0.00 4.18
119 120 4.626172 GTGAAAAGGAGTTAGACCATCGAC 59.374 45.833 0.00 0.00 0.00 4.20
120 121 4.282449 TGTGAAAAGGAGTTAGACCATCGA 59.718 41.667 0.00 0.00 0.00 3.59
121 122 4.566004 TGTGAAAAGGAGTTAGACCATCG 58.434 43.478 0.00 0.00 0.00 3.84
122 123 6.258947 GCTATGTGAAAAGGAGTTAGACCATC 59.741 42.308 0.00 0.00 0.00 3.51
123 124 6.116126 GCTATGTGAAAAGGAGTTAGACCAT 58.884 40.000 0.00 0.00 0.00 3.55
124 125 5.488341 GCTATGTGAAAAGGAGTTAGACCA 58.512 41.667 0.00 0.00 0.00 4.02
125 126 4.876679 GGCTATGTGAAAAGGAGTTAGACC 59.123 45.833 0.00 0.00 0.00 3.85
126 127 5.735766 AGGCTATGTGAAAAGGAGTTAGAC 58.264 41.667 0.00 0.00 0.00 2.59
127 128 6.173339 CAAGGCTATGTGAAAAGGAGTTAGA 58.827 40.000 0.00 0.00 0.00 2.10
128 129 5.940470 ACAAGGCTATGTGAAAAGGAGTTAG 59.060 40.000 0.00 0.00 30.82 2.34
129 130 5.876357 ACAAGGCTATGTGAAAAGGAGTTA 58.124 37.500 0.00 0.00 30.82 2.24
130 131 4.729868 ACAAGGCTATGTGAAAAGGAGTT 58.270 39.130 0.00 0.00 30.82 3.01
131 132 4.373156 ACAAGGCTATGTGAAAAGGAGT 57.627 40.909 0.00 0.00 30.82 3.85
132 133 4.333926 GCTACAAGGCTATGTGAAAAGGAG 59.666 45.833 11.08 2.54 34.75 3.69
133 134 4.261801 GCTACAAGGCTATGTGAAAAGGA 58.738 43.478 11.08 0.00 34.75 3.36
134 135 4.009675 TGCTACAAGGCTATGTGAAAAGG 58.990 43.478 11.08 0.00 34.75 3.11
135 136 5.627499 TTGCTACAAGGCTATGTGAAAAG 57.373 39.130 11.08 3.88 34.75 2.27
136 137 5.564651 GCTTTGCTACAAGGCTATGTGAAAA 60.565 40.000 7.12 8.04 34.75 2.29
137 138 4.082787 GCTTTGCTACAAGGCTATGTGAAA 60.083 41.667 7.12 7.45 34.75 2.69
138 139 3.440173 GCTTTGCTACAAGGCTATGTGAA 59.560 43.478 7.12 1.79 34.75 3.18
139 140 3.009723 GCTTTGCTACAAGGCTATGTGA 58.990 45.455 7.12 0.00 34.75 3.58
140 141 2.749076 TGCTTTGCTACAAGGCTATGTG 59.251 45.455 14.33 0.00 34.75 3.21
141 142 2.749621 GTGCTTTGCTACAAGGCTATGT 59.250 45.455 14.33 7.34 37.32 2.29
142 143 2.223112 CGTGCTTTGCTACAAGGCTATG 60.223 50.000 14.33 4.53 0.00 2.23
143 144 2.009774 CGTGCTTTGCTACAAGGCTAT 58.990 47.619 14.33 0.00 0.00 2.97
144 145 1.270625 ACGTGCTTTGCTACAAGGCTA 60.271 47.619 14.33 0.54 0.00 3.93
145 146 0.535102 ACGTGCTTTGCTACAAGGCT 60.535 50.000 14.33 0.00 0.00 4.58
146 147 0.385974 CACGTGCTTTGCTACAAGGC 60.386 55.000 0.82 7.41 0.00 4.35
147 148 0.385974 GCACGTGCTTTGCTACAAGG 60.386 55.000 32.55 0.00 37.00 3.61
148 149 0.307453 TGCACGTGCTTTGCTACAAG 59.693 50.000 37.59 0.00 40.86 3.16
149 150 0.028770 GTGCACGTGCTTTGCTACAA 59.971 50.000 37.59 14.52 40.86 2.41
150 151 1.646540 GTGCACGTGCTTTGCTACA 59.353 52.632 37.59 15.28 40.86 2.74
151 152 1.082104 GGTGCACGTGCTTTGCTAC 60.082 57.895 37.59 26.28 40.86 3.58
152 153 0.817634 AAGGTGCACGTGCTTTGCTA 60.818 50.000 37.59 16.84 40.86 3.49
153 154 2.120909 AAGGTGCACGTGCTTTGCT 61.121 52.632 37.59 17.75 40.86 3.91
154 155 1.945662 CAAGGTGCACGTGCTTTGC 60.946 57.895 37.59 24.32 42.66 3.68
155 156 4.307258 CAAGGTGCACGTGCTTTG 57.693 55.556 37.59 30.92 42.66 2.77
165 166 7.497925 AGCTTTATTATTACTAGCAAGGTGC 57.502 36.000 0.00 0.00 45.46 5.01
171 172 9.542462 CCAGTGTTAGCTTTATTATTACTAGCA 57.458 33.333 0.00 0.00 34.37 3.49
172 173 9.760077 TCCAGTGTTAGCTTTATTATTACTAGC 57.240 33.333 0.00 0.00 0.00 3.42
184 185 8.523658 GGAATTATTTCTTCCAGTGTTAGCTTT 58.476 33.333 0.00 0.00 41.55 3.51
185 186 7.122799 GGGAATTATTTCTTCCAGTGTTAGCTT 59.877 37.037 0.00 0.00 43.34 3.74
186 187 6.603599 GGGAATTATTTCTTCCAGTGTTAGCT 59.396 38.462 4.62 0.00 43.34 3.32
187 188 6.603599 AGGGAATTATTTCTTCCAGTGTTAGC 59.396 38.462 4.62 0.00 43.34 3.09
188 189 8.462016 CAAGGGAATTATTTCTTCCAGTGTTAG 58.538 37.037 4.62 0.00 43.34 2.34
189 190 8.167392 TCAAGGGAATTATTTCTTCCAGTGTTA 58.833 33.333 4.62 0.00 43.34 2.41
190 191 7.010160 TCAAGGGAATTATTTCTTCCAGTGTT 58.990 34.615 4.62 0.00 43.34 3.32
191 192 6.552008 TCAAGGGAATTATTTCTTCCAGTGT 58.448 36.000 4.62 0.00 43.34 3.55
192 193 7.486647 CATCAAGGGAATTATTTCTTCCAGTG 58.513 38.462 4.62 2.22 43.34 3.66
193 194 6.097412 GCATCAAGGGAATTATTTCTTCCAGT 59.903 38.462 4.62 0.00 43.34 4.00
194 195 6.323225 AGCATCAAGGGAATTATTTCTTCCAG 59.677 38.462 4.62 0.00 43.34 3.86
195 196 6.197168 AGCATCAAGGGAATTATTTCTTCCA 58.803 36.000 4.62 0.00 43.34 3.53
196 197 6.721704 AGCATCAAGGGAATTATTTCTTCC 57.278 37.500 0.00 0.00 41.26 3.46
197 198 8.854117 ACATAGCATCAAGGGAATTATTTCTTC 58.146 33.333 0.00 0.00 32.16 2.87
198 199 8.773033 ACATAGCATCAAGGGAATTATTTCTT 57.227 30.769 0.00 0.00 32.16 2.52
199 200 9.866655 TTACATAGCATCAAGGGAATTATTTCT 57.133 29.630 0.00 0.00 32.16 2.52
205 206 9.071276 CAACTATTACATAGCATCAAGGGAATT 57.929 33.333 0.00 0.00 36.30 2.17
206 207 8.220559 ACAACTATTACATAGCATCAAGGGAAT 58.779 33.333 0.00 0.00 36.30 3.01
207 208 7.573710 ACAACTATTACATAGCATCAAGGGAA 58.426 34.615 0.00 0.00 36.30 3.97
208 209 7.136822 ACAACTATTACATAGCATCAAGGGA 57.863 36.000 0.00 0.00 36.30 4.20
209 210 7.807977 AACAACTATTACATAGCATCAAGGG 57.192 36.000 0.00 0.00 36.30 3.95
210 211 8.892723 TGAAACAACTATTACATAGCATCAAGG 58.107 33.333 0.00 0.00 36.30 3.61
213 214 9.056005 GGATGAAACAACTATTACATAGCATCA 57.944 33.333 0.00 0.00 36.30 3.07
214 215 8.507249 GGGATGAAACAACTATTACATAGCATC 58.493 37.037 0.00 0.00 36.30 3.91
215 216 7.998383 TGGGATGAAACAACTATTACATAGCAT 59.002 33.333 0.00 0.00 36.30 3.79
216 217 7.342581 TGGGATGAAACAACTATTACATAGCA 58.657 34.615 0.00 0.00 36.30 3.49
217 218 7.801716 TGGGATGAAACAACTATTACATAGC 57.198 36.000 0.00 0.00 36.30 2.97
224 225 8.836413 CACGTATATTGGGATGAAACAACTATT 58.164 33.333 0.00 0.00 0.00 1.73
225 226 7.990886 ACACGTATATTGGGATGAAACAACTAT 59.009 33.333 0.00 0.00 0.00 2.12
226 227 7.332557 ACACGTATATTGGGATGAAACAACTA 58.667 34.615 0.00 0.00 0.00 2.24
227 228 6.177610 ACACGTATATTGGGATGAAACAACT 58.822 36.000 0.00 0.00 0.00 3.16
228 229 6.431198 ACACGTATATTGGGATGAAACAAC 57.569 37.500 0.00 0.00 0.00 3.32
229 230 5.292345 CGACACGTATATTGGGATGAAACAA 59.708 40.000 0.00 0.00 0.00 2.83
230 231 4.806775 CGACACGTATATTGGGATGAAACA 59.193 41.667 0.00 0.00 0.00 2.83
231 232 4.318546 GCGACACGTATATTGGGATGAAAC 60.319 45.833 0.00 0.00 0.00 2.78
232 233 3.805422 GCGACACGTATATTGGGATGAAA 59.195 43.478 0.00 0.00 0.00 2.69
233 234 3.069016 AGCGACACGTATATTGGGATGAA 59.931 43.478 0.00 0.00 0.00 2.57
234 235 2.626266 AGCGACACGTATATTGGGATGA 59.374 45.455 0.00 0.00 0.00 2.92
235 236 2.731451 CAGCGACACGTATATTGGGATG 59.269 50.000 0.00 0.00 0.00 3.51
236 237 2.626266 TCAGCGACACGTATATTGGGAT 59.374 45.455 0.00 0.00 0.00 3.85
237 238 2.025898 TCAGCGACACGTATATTGGGA 58.974 47.619 0.00 0.00 0.00 4.37
238 239 2.502213 TCAGCGACACGTATATTGGG 57.498 50.000 0.00 0.00 0.00 4.12
239 240 6.706055 ATAAATCAGCGACACGTATATTGG 57.294 37.500 0.00 0.00 0.00 3.16
240 241 8.882199 CAAAATAAATCAGCGACACGTATATTG 58.118 33.333 0.00 0.00 0.00 1.90
241 242 8.822855 TCAAAATAAATCAGCGACACGTATATT 58.177 29.630 0.00 0.00 0.00 1.28
242 243 8.360325 TCAAAATAAATCAGCGACACGTATAT 57.640 30.769 0.00 0.00 0.00 0.86
243 244 7.703197 TCTCAAAATAAATCAGCGACACGTATA 59.297 33.333 0.00 0.00 0.00 1.47
244 245 6.533723 TCTCAAAATAAATCAGCGACACGTAT 59.466 34.615 0.00 0.00 0.00 3.06
245 246 5.865013 TCTCAAAATAAATCAGCGACACGTA 59.135 36.000 0.00 0.00 0.00 3.57
246 247 4.688879 TCTCAAAATAAATCAGCGACACGT 59.311 37.500 0.00 0.00 0.00 4.49
247 248 5.015733 GTCTCAAAATAAATCAGCGACACG 58.984 41.667 0.00 0.00 0.00 4.49
248 249 5.015733 CGTCTCAAAATAAATCAGCGACAC 58.984 41.667 0.00 0.00 0.00 3.67
249 250 4.092821 CCGTCTCAAAATAAATCAGCGACA 59.907 41.667 0.00 0.00 0.00 4.35
250 251 4.494199 CCCGTCTCAAAATAAATCAGCGAC 60.494 45.833 0.00 0.00 0.00 5.19
251 252 3.621268 CCCGTCTCAAAATAAATCAGCGA 59.379 43.478 0.00 0.00 0.00 4.93
252 253 3.242739 CCCCGTCTCAAAATAAATCAGCG 60.243 47.826 0.00 0.00 0.00 5.18
257 258 4.586306 ACTCCCCCGTCTCAAAATAAAT 57.414 40.909 0.00 0.00 0.00 1.40
259 260 5.703730 ATTACTCCCCCGTCTCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
267 268 2.633481 GCAAGATATTACTCCCCCGTCT 59.367 50.000 0.00 0.00 0.00 4.18
270 271 2.289694 CCTGCAAGATATTACTCCCCCG 60.290 54.545 0.00 0.00 34.07 5.73
271 272 2.711547 ACCTGCAAGATATTACTCCCCC 59.288 50.000 0.00 0.00 34.07 5.40
272 273 5.338463 GGATACCTGCAAGATATTACTCCCC 60.338 48.000 0.00 0.00 34.07 4.81
280 281 3.403038 GCAACGGATACCTGCAAGATAT 58.597 45.455 0.00 0.00 40.69 1.63
285 286 1.376848 TGGCAACGGATACCTGCAA 59.623 52.632 0.00 0.00 42.32 4.08
312 313 5.787380 CACTGCTGGCTCATCTACATATTA 58.213 41.667 0.00 0.00 0.00 0.98
317 319 0.107993 GCACTGCTGGCTCATCTACA 60.108 55.000 0.00 0.00 0.00 2.74
386 388 9.594478 TTCGAAGAAAAGTACTATGCATCAATA 57.406 29.630 0.19 0.00 45.90 1.90
387 389 8.492673 TTCGAAGAAAAGTACTATGCATCAAT 57.507 30.769 0.19 0.00 45.90 2.57
409 413 6.018098 AGTCTACAGTATACATCGTCCTTTCG 60.018 42.308 5.50 0.00 0.00 3.46
453 463 1.486310 ACACACTTCACTTCAGCTGGA 59.514 47.619 15.13 3.47 0.00 3.86
475 485 2.777972 CCCGGCATGCATGTCAAGG 61.778 63.158 29.36 24.22 31.41 3.61
480 490 2.438975 CTGTCCCGGCATGCATGT 60.439 61.111 26.79 0.00 0.00 3.21
498 508 6.153851 TGACAAGGTCTAAATTATGACTCGGA 59.846 38.462 9.60 0.00 33.15 4.55
512 522 2.079158 CGTACGTCCTGACAAGGTCTA 58.921 52.381 7.22 0.00 44.82 2.59
542 552 1.610038 ACGTACCGATCAGTTGTGTCA 59.390 47.619 0.00 0.00 0.00 3.58
556 566 1.084289 GATGCCTCCACAAACGTACC 58.916 55.000 0.00 0.00 0.00 3.34
594 3649 3.003897 TGTCGGCACATAACAAGAAAACC 59.996 43.478 0.00 0.00 0.00 3.27
626 3681 1.542915 CCAAGGTGCCAAGACAGAATG 59.457 52.381 0.00 0.00 46.00 2.67
627 3682 1.915141 CCAAGGTGCCAAGACAGAAT 58.085 50.000 0.00 0.00 0.00 2.40
628 3683 0.823356 GCCAAGGTGCCAAGACAGAA 60.823 55.000 0.00 0.00 0.00 3.02
629 3684 1.228245 GCCAAGGTGCCAAGACAGA 60.228 57.895 0.00 0.00 0.00 3.41
630 3685 0.036732 TAGCCAAGGTGCCAAGACAG 59.963 55.000 0.00 0.00 0.00 3.51
688 3743 9.175312 GGATCTTCATCAACATCATTAGCATAT 57.825 33.333 0.00 0.00 0.00 1.78
816 8269 3.485346 GAGGGCCACCAACGTCCAA 62.485 63.158 6.18 0.00 40.13 3.53
1032 8517 1.730451 GCGAGAGGGACAGGTCTAGC 61.730 65.000 0.00 0.00 34.83 3.42
1048 8533 3.008517 TCTCATGGGGGCAAGCGA 61.009 61.111 0.00 0.00 0.00 4.93
1088 8573 2.025887 TCAGCCCAAAAGAAGGAGGATC 60.026 50.000 0.00 0.00 0.00 3.36
1097 8582 1.270839 CGTCTCCTTCAGCCCAAAAGA 60.271 52.381 0.00 0.00 0.00 2.52
1358 8867 3.583276 TTCTCGCCGTCGTTGCCAT 62.583 57.895 0.00 0.00 36.96 4.40
1361 8870 4.135493 GCTTCTCGCCGTCGTTGC 62.135 66.667 0.00 0.00 36.96 4.17
1362 8871 2.720758 CTGCTTCTCGCCGTCGTTG 61.721 63.158 0.00 0.00 38.05 4.10
1363 8872 2.214181 ATCTGCTTCTCGCCGTCGTT 62.214 55.000 0.00 0.00 38.05 3.85
1498 9091 5.061187 TGAATACGTTTAGTGCACATACACG 59.939 40.000 21.04 21.75 45.45 4.49
1503 9096 4.577687 CGTGAATACGTTTAGTGCACAT 57.422 40.909 21.04 6.83 44.99 3.21
1519 9124 0.249699 ACAGGACGAACATGCGTGAA 60.250 50.000 14.17 0.00 45.72 3.18
1555 9160 9.705103 AGACCATAGGTAGTAGTATTACAAACA 57.295 33.333 5.32 0.00 35.25 2.83
1563 9168 5.620457 AGGGGAAGACCATAGGTAGTAGTAT 59.380 44.000 0.00 0.00 42.91 2.12
1564 9169 4.986900 AGGGGAAGACCATAGGTAGTAGTA 59.013 45.833 0.00 0.00 42.91 1.82
1565 9170 3.798422 AGGGGAAGACCATAGGTAGTAGT 59.202 47.826 0.00 0.00 42.91 2.73
1566 9171 4.106663 AGAGGGGAAGACCATAGGTAGTAG 59.893 50.000 0.00 0.00 42.91 2.57
1567 9172 4.060192 AGAGGGGAAGACCATAGGTAGTA 58.940 47.826 0.00 0.00 42.91 1.82
1673 9345 4.712829 TGAGTAATCCCGGAGTTGATGTAA 59.287 41.667 0.73 0.00 0.00 2.41
1674 9346 4.098960 GTGAGTAATCCCGGAGTTGATGTA 59.901 45.833 0.73 0.00 0.00 2.29
1681 9375 2.233922 CTGTTGTGAGTAATCCCGGAGT 59.766 50.000 0.73 0.00 0.00 3.85
1686 9380 5.063880 ACAAACTCTGTTGTGAGTAATCCC 58.936 41.667 0.00 0.00 45.49 3.85
1687 9381 5.992217 AGACAAACTCTGTTGTGAGTAATCC 59.008 40.000 0.00 0.00 45.49 3.01
1689 9383 6.582636 TGAGACAAACTCTGTTGTGAGTAAT 58.417 36.000 0.00 0.00 45.49 1.89
1702 9396 5.179368 TCCGACAAATCAATGAGACAAACTC 59.821 40.000 0.00 0.00 45.11 3.01
1704 9398 5.356882 TCCGACAAATCAATGAGACAAAC 57.643 39.130 0.00 0.00 0.00 2.93
1721 9415 5.220381 TCTTCTTGCGAACATATATCCGAC 58.780 41.667 0.00 0.00 0.00 4.79
1732 9426 6.258899 ACTTTTTCTCTTTCTTCTTGCGAAC 58.741 36.000 0.00 0.00 0.00 3.95
1749 9443 7.657336 TGGTAAACTTGATCATGGACTTTTTC 58.343 34.615 12.76 3.11 0.00 2.29
1755 9452 7.601856 TGAAATTGGTAAACTTGATCATGGAC 58.398 34.615 12.76 7.52 0.00 4.02
1772 9659 4.630940 CGGTTCCCATTTCATTGAAATTGG 59.369 41.667 25.71 25.71 42.54 3.16
1788 9675 0.896479 TAAAAGCAAGCCCGGTTCCC 60.896 55.000 0.00 0.00 0.00 3.97
1793 9680 3.525268 AATTGATAAAAGCAAGCCCGG 57.475 42.857 0.00 0.00 0.00 5.73
1795 9682 4.494484 ACGAAATTGATAAAAGCAAGCCC 58.506 39.130 0.00 0.00 0.00 5.19
1824 9711 7.041167 CCGAAAATATGGACATGCAGATAAGAA 60.041 37.037 0.00 0.00 0.00 2.52
1826 9713 6.605849 CCGAAAATATGGACATGCAGATAAG 58.394 40.000 0.00 0.00 0.00 1.73
1856 9896 7.232534 GGAAAATGCATAATGTATAGTGGGGAA 59.767 37.037 0.00 0.00 0.00 3.97
1859 9899 7.094205 GGAGGAAAATGCATAATGTATAGTGGG 60.094 40.741 0.00 0.00 0.00 4.61
1861 9901 8.627208 AGGAGGAAAATGCATAATGTATAGTG 57.373 34.615 0.00 0.00 0.00 2.74
1865 9905 9.646522 AAGTTAGGAGGAAAATGCATAATGTAT 57.353 29.630 0.00 0.00 0.00 2.29
1867 9907 7.961326 AAGTTAGGAGGAAAATGCATAATGT 57.039 32.000 0.00 0.00 0.00 2.71
1868 9908 9.956720 CTAAAGTTAGGAGGAAAATGCATAATG 57.043 33.333 0.00 0.00 0.00 1.90
1869 9909 9.700831 ACTAAAGTTAGGAGGAAAATGCATAAT 57.299 29.630 0.00 0.00 35.08 1.28
1870 9910 9.528489 AACTAAAGTTAGGAGGAAAATGCATAA 57.472 29.630 0.00 0.00 36.32 1.90
1871 9911 9.528489 AAACTAAAGTTAGGAGGAAAATGCATA 57.472 29.630 0.00 0.00 37.25 3.14
1872 9912 8.422577 AAACTAAAGTTAGGAGGAAAATGCAT 57.577 30.769 0.00 0.00 37.25 3.96
1873 9913 7.833285 AAACTAAAGTTAGGAGGAAAATGCA 57.167 32.000 0.00 0.00 37.25 3.96
1892 9932 9.255029 TGCTCCTGAGTGCATATATATAAACTA 57.745 33.333 8.68 0.00 37.57 2.24
1893 9933 8.138928 TGCTCCTGAGTGCATATATATAAACT 57.861 34.615 8.52 8.52 37.57 2.66
1905 9945 2.026542 AGAATTGATGCTCCTGAGTGCA 60.027 45.455 0.22 0.22 45.79 4.57
1906 9946 2.641305 AGAATTGATGCTCCTGAGTGC 58.359 47.619 0.00 0.00 0.00 4.40
1907 9947 4.259356 TGAAGAATTGATGCTCCTGAGTG 58.741 43.478 0.00 0.00 0.00 3.51
1908 9948 4.515361 CTGAAGAATTGATGCTCCTGAGT 58.485 43.478 0.00 0.00 0.00 3.41
1909 9949 3.878103 CCTGAAGAATTGATGCTCCTGAG 59.122 47.826 0.00 0.00 0.00 3.35
1910 9950 3.265221 ACCTGAAGAATTGATGCTCCTGA 59.735 43.478 0.00 0.00 0.00 3.86
1911 9951 3.618351 ACCTGAAGAATTGATGCTCCTG 58.382 45.455 0.00 0.00 0.00 3.86
1912 9952 4.015084 CAACCTGAAGAATTGATGCTCCT 58.985 43.478 0.00 0.00 0.00 3.69
1913 9953 3.760684 ACAACCTGAAGAATTGATGCTCC 59.239 43.478 0.00 0.00 0.00 4.70
1914 9954 4.699257 AGACAACCTGAAGAATTGATGCTC 59.301 41.667 0.00 0.00 0.00 4.26
1915 9955 4.660168 AGACAACCTGAAGAATTGATGCT 58.340 39.130 0.00 0.00 0.00 3.79
1916 9956 4.456911 TGAGACAACCTGAAGAATTGATGC 59.543 41.667 0.00 0.00 0.00 3.91
1917 9957 5.391736 GCTGAGACAACCTGAAGAATTGATG 60.392 44.000 0.00 0.00 0.00 3.07
1918 9958 4.699257 GCTGAGACAACCTGAAGAATTGAT 59.301 41.667 0.00 0.00 0.00 2.57
1919 9959 4.067896 GCTGAGACAACCTGAAGAATTGA 58.932 43.478 0.00 0.00 0.00 2.57
1920 9960 4.070716 AGCTGAGACAACCTGAAGAATTG 58.929 43.478 0.00 0.00 0.00 2.32
1921 9961 4.070716 CAGCTGAGACAACCTGAAGAATT 58.929 43.478 8.42 0.00 0.00 2.17
1922 9962 3.672808 CAGCTGAGACAACCTGAAGAAT 58.327 45.455 8.42 0.00 0.00 2.40
1923 9963 2.808202 GCAGCTGAGACAACCTGAAGAA 60.808 50.000 20.43 0.00 0.00 2.52
1924 9964 1.270518 GCAGCTGAGACAACCTGAAGA 60.271 52.381 20.43 0.00 0.00 2.87
1925 9965 1.155042 GCAGCTGAGACAACCTGAAG 58.845 55.000 20.43 0.00 0.00 3.02
1926 9966 0.469494 TGCAGCTGAGACAACCTGAA 59.531 50.000 20.43 0.00 0.00 3.02
1927 9967 0.034476 CTGCAGCTGAGACAACCTGA 59.966 55.000 20.43 0.00 0.00 3.86
1928 9968 1.575576 GCTGCAGCTGAGACAACCTG 61.576 60.000 31.33 2.80 38.21 4.00
1929 9969 1.302351 GCTGCAGCTGAGACAACCT 60.302 57.895 31.33 0.00 38.21 3.50
1930 9970 1.168407 TTGCTGCAGCTGAGACAACC 61.168 55.000 36.61 6.97 42.66 3.77
1931 9971 0.664761 TTTGCTGCAGCTGAGACAAC 59.335 50.000 36.61 7.74 42.66 3.32
1932 9972 1.391577 TTTTGCTGCAGCTGAGACAA 58.608 45.000 36.61 20.31 42.66 3.18
1933 9973 1.391577 TTTTTGCTGCAGCTGAGACA 58.608 45.000 36.61 15.23 42.66 3.41
1954 9994 9.244799 CCGTTAACTTTCTTCTTGCTAATTTTT 57.755 29.630 3.71 0.00 0.00 1.94
1955 9995 7.865889 CCCGTTAACTTTCTTCTTGCTAATTTT 59.134 33.333 3.71 0.00 0.00 1.82
1956 9996 7.013942 ACCCGTTAACTTTCTTCTTGCTAATTT 59.986 33.333 3.71 0.00 0.00 1.82
1957 9997 6.489022 ACCCGTTAACTTTCTTCTTGCTAATT 59.511 34.615 3.71 0.00 0.00 1.40
1958 9998 6.002082 ACCCGTTAACTTTCTTCTTGCTAAT 58.998 36.000 3.71 0.00 0.00 1.73
1959 9999 5.237779 CACCCGTTAACTTTCTTCTTGCTAA 59.762 40.000 3.71 0.00 0.00 3.09
1960 10000 4.753107 CACCCGTTAACTTTCTTCTTGCTA 59.247 41.667 3.71 0.00 0.00 3.49
1961 10001 3.564225 CACCCGTTAACTTTCTTCTTGCT 59.436 43.478 3.71 0.00 0.00 3.91
1962 10002 3.314357 ACACCCGTTAACTTTCTTCTTGC 59.686 43.478 3.71 0.00 0.00 4.01
1963 10003 6.037391 TGTTACACCCGTTAACTTTCTTCTTG 59.963 38.462 3.71 0.00 0.00 3.02
1964 10004 6.114767 TGTTACACCCGTTAACTTTCTTCTT 58.885 36.000 3.71 0.00 0.00 2.52
1965 10005 5.673514 TGTTACACCCGTTAACTTTCTTCT 58.326 37.500 3.71 0.00 0.00 2.85
1966 10006 5.525012 ACTGTTACACCCGTTAACTTTCTTC 59.475 40.000 3.71 0.00 0.00 2.87
1967 10007 5.430886 ACTGTTACACCCGTTAACTTTCTT 58.569 37.500 3.71 0.00 0.00 2.52
1968 10008 5.027293 ACTGTTACACCCGTTAACTTTCT 57.973 39.130 3.71 0.00 0.00 2.52
1969 10009 4.084900 CGACTGTTACACCCGTTAACTTTC 60.085 45.833 3.71 0.00 0.00 2.62
1970 10010 3.803778 CGACTGTTACACCCGTTAACTTT 59.196 43.478 3.71 0.00 0.00 2.66
1971 10011 3.068024 TCGACTGTTACACCCGTTAACTT 59.932 43.478 3.71 0.00 0.00 2.66
1972 10012 2.622942 TCGACTGTTACACCCGTTAACT 59.377 45.455 3.71 0.00 0.00 2.24
1973 10013 3.011949 TCGACTGTTACACCCGTTAAC 57.988 47.619 0.00 0.00 0.00 2.01
1974 10014 3.724508 TTCGACTGTTACACCCGTTAA 57.275 42.857 0.00 0.00 0.00 2.01
1975 10015 3.255395 TCATTCGACTGTTACACCCGTTA 59.745 43.478 2.44 0.00 0.00 3.18
1976 10016 2.036217 TCATTCGACTGTTACACCCGTT 59.964 45.455 2.44 0.00 0.00 4.44
1977 10017 1.614903 TCATTCGACTGTTACACCCGT 59.385 47.619 2.44 0.00 0.00 5.28
1978 10018 2.357327 TCATTCGACTGTTACACCCG 57.643 50.000 2.44 0.00 0.00 5.28
1979 10019 4.671766 GCATTTCATTCGACTGTTACACCC 60.672 45.833 2.44 0.00 0.00 4.61
1980 10020 4.083537 TGCATTTCATTCGACTGTTACACC 60.084 41.667 2.44 0.00 0.00 4.16
1981 10021 5.029650 TGCATTTCATTCGACTGTTACAC 57.970 39.130 2.44 0.00 0.00 2.90
1982 10022 5.391843 CCATGCATTTCATTCGACTGTTACA 60.392 40.000 0.00 0.00 31.79 2.41
1983 10023 5.030295 CCATGCATTTCATTCGACTGTTAC 58.970 41.667 0.00 0.00 31.79 2.50
1984 10024 4.096231 CCCATGCATTTCATTCGACTGTTA 59.904 41.667 0.00 0.00 31.79 2.41
1985 10025 3.119388 CCCATGCATTTCATTCGACTGTT 60.119 43.478 0.00 0.00 31.79 3.16
1986 10026 2.424601 CCCATGCATTTCATTCGACTGT 59.575 45.455 0.00 0.00 31.79 3.55
1987 10027 2.797087 GCCCATGCATTTCATTCGACTG 60.797 50.000 0.00 0.00 37.47 3.51
1988 10028 1.406539 GCCCATGCATTTCATTCGACT 59.593 47.619 0.00 0.00 37.47 4.18
1989 10029 1.536709 GGCCCATGCATTTCATTCGAC 60.537 52.381 0.00 0.00 40.13 4.20
1990 10030 0.746063 GGCCCATGCATTTCATTCGA 59.254 50.000 0.00 0.00 40.13 3.71
1991 10031 0.249573 GGGCCCATGCATTTCATTCG 60.250 55.000 19.95 0.00 40.13 3.34
1992 10032 1.125633 AGGGCCCATGCATTTCATTC 58.874 50.000 27.56 0.00 40.13 2.67
1993 10033 1.587066 AAGGGCCCATGCATTTCATT 58.413 45.000 27.56 1.34 40.13 2.57
1994 10034 2.475339 TAAGGGCCCATGCATTTCAT 57.525 45.000 27.56 0.00 40.13 2.57
1995 10035 2.109774 CTTAAGGGCCCATGCATTTCA 58.890 47.619 27.56 0.00 40.13 2.69
1996 10036 2.101415 GTCTTAAGGGCCCATGCATTTC 59.899 50.000 27.56 3.21 40.13 2.17
1997 10037 2.110578 GTCTTAAGGGCCCATGCATTT 58.889 47.619 27.56 11.11 40.13 2.32
1998 10038 1.288932 AGTCTTAAGGGCCCATGCATT 59.711 47.619 27.56 11.95 40.13 3.56
1999 10039 0.929244 AGTCTTAAGGGCCCATGCAT 59.071 50.000 27.56 6.93 40.13 3.96
2000 10040 0.704076 AAGTCTTAAGGGCCCATGCA 59.296 50.000 27.56 3.31 40.13 3.96
2001 10041 1.852633 AAAGTCTTAAGGGCCCATGC 58.147 50.000 27.56 7.64 0.00 4.06
2002 10042 3.696548 GAGAAAAGTCTTAAGGGCCCATG 59.303 47.826 27.56 10.87 32.80 3.66
2003 10043 3.333680 TGAGAAAAGTCTTAAGGGCCCAT 59.666 43.478 27.56 16.50 32.80 4.00
2004 10044 2.714250 TGAGAAAAGTCTTAAGGGCCCA 59.286 45.455 27.56 0.00 32.80 5.36
2005 10045 3.434940 TGAGAAAAGTCTTAAGGGCCC 57.565 47.619 16.46 16.46 32.80 5.80
2006 10046 4.589908 TCATGAGAAAAGTCTTAAGGGCC 58.410 43.478 1.85 0.00 32.80 5.80
2007 10047 6.349694 CCTTTCATGAGAAAAGTCTTAAGGGC 60.350 42.308 1.85 0.00 42.78 5.19
2008 10048 6.942576 TCCTTTCATGAGAAAAGTCTTAAGGG 59.057 38.462 13.05 0.00 42.78 3.95
2009 10049 7.986085 TCCTTTCATGAGAAAAGTCTTAAGG 57.014 36.000 1.85 8.55 42.78 2.69
2010 10050 9.890352 CTTTCCTTTCATGAGAAAAGTCTTAAG 57.110 33.333 9.21 0.00 42.78 1.85
2011 10051 9.627123 TCTTTCCTTTCATGAGAAAAGTCTTAA 57.373 29.630 9.21 0.00 42.78 1.85
2012 10052 9.057089 GTCTTTCCTTTCATGAGAAAAGTCTTA 57.943 33.333 9.21 0.00 42.78 2.10
2013 10053 7.777440 AGTCTTTCCTTTCATGAGAAAAGTCTT 59.223 33.333 9.21 0.00 42.78 3.01
2014 10054 7.286313 AGTCTTTCCTTTCATGAGAAAAGTCT 58.714 34.615 9.21 10.46 42.78 3.24
2015 10055 7.503521 AGTCTTTCCTTTCATGAGAAAAGTC 57.496 36.000 9.21 8.95 42.78 3.01
2016 10056 7.888250 AAGTCTTTCCTTTCATGAGAAAAGT 57.112 32.000 9.21 3.12 42.78 2.66
2017 10057 9.242477 GAAAAGTCTTTCCTTTCATGAGAAAAG 57.758 33.333 9.21 10.61 36.95 2.27
2018 10058 8.971073 AGAAAAGTCTTTCCTTTCATGAGAAAA 58.029 29.630 9.21 3.12 41.72 2.29
2019 10059 8.525290 AGAAAAGTCTTTCCTTTCATGAGAAA 57.475 30.769 7.99 7.99 41.72 2.52
2020 10060 8.525290 AAGAAAAGTCTTTCCTTTCATGAGAA 57.475 30.769 0.00 0.00 41.55 2.87
2021 10061 7.775093 TGAAGAAAAGTCTTTCCTTTCATGAGA 59.225 33.333 0.00 0.00 44.42 3.27
2022 10062 7.859875 GTGAAGAAAAGTCTTTCCTTTCATGAG 59.140 37.037 15.97 0.00 44.42 2.90
2023 10063 7.339212 TGTGAAGAAAAGTCTTTCCTTTCATGA 59.661 33.333 15.97 0.00 44.42 3.07
2024 10064 7.483307 TGTGAAGAAAAGTCTTTCCTTTCATG 58.517 34.615 15.97 0.00 44.42 3.07
2025 10065 7.645058 TGTGAAGAAAAGTCTTTCCTTTCAT 57.355 32.000 15.97 0.00 44.42 2.57
2057 10100 4.378774 CAAGAGATTCGAGATTCCATGCT 58.621 43.478 0.00 0.00 0.00 3.79
2061 10104 3.679917 GCACCAAGAGATTCGAGATTCCA 60.680 47.826 0.00 0.00 0.00 3.53
2068 10111 0.391661 GCAGGCACCAAGAGATTCGA 60.392 55.000 0.00 0.00 0.00 3.71
2069 10112 0.674581 TGCAGGCACCAAGAGATTCG 60.675 55.000 0.00 0.00 0.00 3.34
2127 10170 2.341101 CGGTCCAGTACTCCGCAGT 61.341 63.158 8.39 0.00 37.90 4.40
2135 10178 2.384203 GCATCTTGCGGTCCAGTAC 58.616 57.895 0.00 0.00 31.71 2.73
2215 10262 1.264295 GGACTGACGGTTCCCTACTT 58.736 55.000 0.00 0.00 0.00 2.24
2216 10263 0.964358 CGGACTGACGGTTCCCTACT 60.964 60.000 0.00 0.00 0.00 2.57
2230 10278 0.674895 GTCTTGCCTGCAATCGGACT 60.675 55.000 4.84 0.00 35.20 3.85
2245 10293 3.269381 TCCTAATTTGGATGGGCAGTCTT 59.731 43.478 4.36 0.00 0.00 3.01
2246 10294 2.852449 TCCTAATTTGGATGGGCAGTCT 59.148 45.455 4.36 0.00 0.00 3.24
2247 10295 3.297134 TCCTAATTTGGATGGGCAGTC 57.703 47.619 4.36 0.00 0.00 3.51
2248 10296 3.756082 TTCCTAATTTGGATGGGCAGT 57.244 42.857 9.53 0.00 35.83 4.40
2249 10297 5.619132 AAATTCCTAATTTGGATGGGCAG 57.381 39.130 9.53 0.00 39.50 4.85
2279 10327 4.201685 GCGCTATTTTTCACGTCACTGTAT 60.202 41.667 0.00 0.00 0.00 2.29
2280 10328 3.122278 GCGCTATTTTTCACGTCACTGTA 59.878 43.478 0.00 0.00 0.00 2.74
2282 10330 2.157668 AGCGCTATTTTTCACGTCACTG 59.842 45.455 8.99 0.00 0.00 3.66
2284 10332 2.875080 AGCGCTATTTTTCACGTCAC 57.125 45.000 8.99 0.00 0.00 3.67
2286 10334 4.090930 TGAAGTAGCGCTATTTTTCACGTC 59.909 41.667 23.81 17.31 0.00 4.34
2326 10374 4.701956 AATGCCAATTCTCCGTTTGTAG 57.298 40.909 0.00 0.00 0.00 2.74
2333 10381 3.563808 TCGGATAAAATGCCAATTCTCCG 59.436 43.478 11.66 11.66 40.30 4.63
2342 10390 2.017049 ACACTGCTCGGATAAAATGCC 58.983 47.619 0.00 0.00 0.00 4.40
2350 10398 4.142609 ACATTATTCACACTGCTCGGAT 57.857 40.909 0.00 0.00 0.00 4.18
2352 10400 4.271049 CCTAACATTATTCACACTGCTCGG 59.729 45.833 0.00 0.00 0.00 4.63
2353 10401 5.109210 TCCTAACATTATTCACACTGCTCG 58.891 41.667 0.00 0.00 0.00 5.03
2354 10402 6.763135 TGATCCTAACATTATTCACACTGCTC 59.237 38.462 0.00 0.00 0.00 4.26
2360 10408 7.710907 GCAGTAGTGATCCTAACATTATTCACA 59.289 37.037 0.42 0.00 36.74 3.58
2372 10420 3.572632 ACGTAGGCAGTAGTGATCCTA 57.427 47.619 0.42 0.77 0.00 2.94
2377 10425 2.086869 GTGGTACGTAGGCAGTAGTGA 58.913 52.381 0.42 0.00 0.00 3.41
2385 10433 5.756347 TGAATATCAATTGTGGTACGTAGGC 59.244 40.000 5.13 0.00 0.00 3.93
2388 10436 6.578944 AGCTGAATATCAATTGTGGTACGTA 58.421 36.000 5.13 0.00 0.00 3.57
2390 10438 5.991328 AGCTGAATATCAATTGTGGTACG 57.009 39.130 5.13 0.00 0.00 3.67
2391 10439 7.715249 TCCTTAGCTGAATATCAATTGTGGTAC 59.285 37.037 5.13 0.00 0.00 3.34
2395 10443 8.680903 AGTTTCCTTAGCTGAATATCAATTGTG 58.319 33.333 5.13 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.